Citrus Sinensis ID: 019699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEccccccEEEEEEcccccEEEEEcccEEEEcccccHHHHHcHHHHccccccccEEEEEccccHHHHHHHHccccccEEEEEEccHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHEEEEcccccccHHHHHHHHHHccccccccccHHHHHHHccccHHHHHHHcccccccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccEEEEcccccEEEEEEccEEEEEEEccccEEEEEEEcccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHccccccEEEEEEccHHHHHHHHHHcHHHHcccccccEEEEEccHHHHHccccccEEEEEEccccHHHHccHHHHccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcccccccccccHHHHHHHHHccccEcccHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccHHHHcccc
Coil and Loop (DISEMBL)
mgeiscsngisqangadaknvaltgyrkscwyEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDgklqsaevdefiyheslvhpallhhpnpktifimgggegsTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprleLVINDARAELESRKESYDVIigdladpieggpcyklytKSFYEFvvkprlnpegifvtqagpagifshTEVFSCIYNTLRQVFKYVvpysahipsfadtwgwimasdspftlsAEELDMKVKKNikgenryldgktisssSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA
Flexible Loop (DISEMBL)
mgeiscsngisqangadaknvaLTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVnkeafsdprlelVINDARAelesrkesydvIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKnikgenryldgktisssstlsKAVRKSldnetqvytegsarFIYGygsalkqnra
Low Complexity Region (SEG)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA
Disordered region (IsUnstruct)
******************KNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTL********************************************VYTEGSARFIYGYG********
Disordered Region (DISOPRED)
***************************KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYG**********
Disordered Region (DISEMBL)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA
Disordered Region (DISPRO)
*GEISCSNGISQA********ALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q9S7X6	339	Thermospermine synthase A	yes	no	0.985	0.979	0.612	1e-129
Q5SK28	314	Spermidine synthase OS=Th	yes	no	0.836	0.898	0.422	1e-58
Q72K55	314	Spermidine synthase OS=Th	yes	no	0.836	0.898	0.422	1e-58
Q9YE02	314	Probable spermidine synth	yes	no	0.902	0.968	0.391	4e-57
Q975S5	300	Probable spermidine synth	yes	no	0.798	0.896	0.425	1e-56
Q2JQS1	312	Spermidine synthase OS=Sy	yes	no	0.798	0.862	0.386	3e-53
Q2JQ57	312	Spermidine synthase OS=Sy	yes	no	0.863	0.932	0.362	1e-52
Q9HV34	349	Spermidine synthase 2 OS=	yes	no	0.816	0.787	0.383	2e-51
Q4JAZ8	302	Probable spermidine synth	yes	no	0.804	0.897	0.418	4e-51
Q9UXE4	301	Probable spermidine synth	yes	no	0.821	0.920	0.429	6e-50

>sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 204/333 (61%), Positives = 269/333 (80%), Gaps = 1/333 (0%)

Query: 3   EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
           E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct: 6   EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query: 62  LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
           LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct: 66  LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query: 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
           +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct: 126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query: 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
           DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct: 186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query: 242 FKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSST 301
           FKYV  Y+AH+PSFADTWGW+MASD  F +  +E+D ++++ + GE  YL+  +  S++T
Sbjct: 246 FKYVKAYTAHVPSFADTWGWVMASDHEFDVEVDEMDRRIEERVNGELMYLNAPSFVSAAT 305

Query: 302 LSKAVRKSLDNETQVYTEGSARFIYGYGSALKQ 334
           L+K +  +L+ ET+VY+E +ARFI+G+G A + 
Sbjct: 306 LNKTISLALEKETEVYSEENARFIHGHGVAYRH 338

Required for correct xylem specification through regulation of the lifetime of the xylem elements. Prevents premature death of the xylem vessel elements.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 9

>sp|Q5SK28|SPEE_THET8 Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1

 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 183/291 (62%), Gaps = 9/291 (3%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS--PFTLSAEELDMKVK 281
           + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+  P   S   ++ +++
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258

Query: 282 -KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSA 331
            +N+    R+L    + +   L K + ++L+ ET V T+ +  ++   G A
Sbjct: 259 ERNLA--LRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Has broad substrate specificity. Is also active with agmatine and norspermidine. Has lower activity with homospermidine, mitsubishine and thermine.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q72K55|SPEE_THET2 Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1

 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 183/291 (62%), Gaps = 9/291 (3%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80

Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140

Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS--PFTLSAEELDMKVK 281
           + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+  P   S   ++ +++
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258

Query: 282 -KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSA 331
            +N+    R+L    + +   L K + ++L+ ET V T+ +  ++   G A
Sbjct: 259 ERNLA--LRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9YE02|SPEE_AERPE Probable spermidine synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=speE PE=3 SV=2

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 124/317 (39%), Positives = 194/317 (61%), Gaps = 13/317 (4%)

Query: 15  GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVI 74
           G   K+V L    K  W+ E +  +      +  ++  G +R+Q+IA++     GK LV+
Sbjct: 3   GGSEKSVFL----KWSWFLEWLTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVL 58

Query: 75  DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134
           DGK QS+E DEF+YHE+LVHPA++ H +P+ + I+GGGEG+T RE+L+H++VEK VM DI
Sbjct: 59  DGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDI 118

Query: 135 DEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKES-YDVIIGDLADPIEGGPC 192
           DE VV   + +L   ++ AF DPR E+VI+DA   + S+ E+ +DV+I DL DP+E GP 
Sbjct: 119 DETVVNVAREHLREWHRGAFDDPRAEVVIDDAWNYVASKAETGFDVVIADLVDPLEAGPA 178

Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252
            +LY++ +Y  +VK  +NP G+FVTQA    I   TE  + I NT+ +VFK+V  Y  ++
Sbjct: 179 TRLYSEEYYR-MVKDVMNPGGVFVTQA--VSISHLTEYHAIIRNTVARVFKHVESYGVYV 235

Query: 253 PSFADTWGWIMASD--SPFTLSAEE-LDMKVKKNIKG-ENRYLDGKTISSSSTLSKAVRK 308
           PSF   WG+++ASD   P  L      + ++   ++G E R+LD  ++     + K  R+
Sbjct: 236 PSFDSMWGFVVASDDKDPRILGDRGFFETRLSHQLQGAELRFLDYASMLHMLNIPKMYRE 295

Query: 309 SLDNETQVYTEGSARFI 325
           ++  E +  T  +  F+
Sbjct: 296 AIAREKRYATLDNQVFL 312

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q975S5|SPEE_SULTO Probable spermidine synthase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=speE PE=3 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/277 (42%), Positives = 174/277 (62%), Gaps = 8/277 (2%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104
           A+  ++   +T YQ   L++   FGKAL++DGK+QS   DEFIYHE+LVHP LL   NP+
Sbjct: 20  AITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPE 79

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
            I I+GGGEG+T RE+L+HKT++ V M DID  V++F K YL   ++ AF +P+ +LVI 
Sbjct: 80  KILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQEWHQGAFDNPKSKLVIE 139

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           D    ++  KE +D ++ DL DPI+  P   LYTK FYE V   R++  GI      P+ 
Sbjct: 140 DGYKFIKETKEKFDAVVIDLTDPIKDSPSQMLYTKEFYEEV--KRISKWGIVTQATSPS- 196

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD--SPFTLSAEELDMKVK 281
            FS  E FS IYNT++ VFK V     ++P+F   WG++ ASD  +P   S EE++ ++K
Sbjct: 197 -FS-LETFSIIYNTIKHVFKKVSAGITYVPAFDGLWGFVYASDEVNPAEFSKEEINNRIK 254

Query: 282 KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYT 318
           + I G  R+ DG+T  +  ++ K +R+ L+ E ++ T
Sbjct: 255 ERIDGSLRFYDGETHITMFSIPKHIREVLEKENKIST 291

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQS1|SPEE_SYNJA Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 178/287 (62%), Gaps = 18/287 (6%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN-- 102
           A+  IL   +TR+Q++ + +T  +GK L++DG  QS   DEF+YHE+LVHPAL+      
Sbjct: 23  AITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAG 82

Query: 103 --PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
             P+ + I+GG EG+T RE+LR ++VE+VVM DID EVVE C+ +L  +++ +F+DPR E
Sbjct: 83  GIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADPRAE 142

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           +VI DA   L   +  +D I+ DL+DP+E GP Y+L+T+ F+   V+ +L   G FV QA
Sbjct: 143 VVIADALDFLGQTEPIWDAILSDLSDPVEAGPAYRLFTQEFFR-QVRSKLQTAGAFVIQA 201

Query: 220 GPAG---IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFT--LSAE 274
           GP G   ++ HT     I +TL+ VF  V PY+ + P++    G+ +A+  P +     E
Sbjct: 202 GPTGPVELWQHTR----IVHTLKTVFAAVQPYAIYAPTYGGPLGFALAAQDPISSRPEPE 257

Query: 275 ELDMKVKKNI---KGENRYLDGKTISSSSTLSKAVRKSLDNETQVYT 318
           ++D  + +++   +G  R++DG T+     +   +R+++  ET VYT
Sbjct: 258 QVDQILAQHLDPDRGALRFIDGITLLGLYQVPAHLRRAIAAETTVYT 304

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2JQ57|SPEE_SYNJB Spermidine synthase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=speE PE=3 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 183/309 (59%), Gaps = 18/309 (5%)

Query: 23  LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
           ++  R   W +E        + A+  IL   +T +Q++ + +T  FGK L++DG  QS  
Sbjct: 1   MSSPRSFFWVQEYFTPWDYTARAVTRILAYRKTPFQEMLIAETGAFGKGLMLDGHWQSTT 60

Query: 83  VDEFIYHESLVHPALLHHPN----PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138
           VDEF+YHE+LVHPA++        P+ + ++GG EG+T RE+LR ++VE+VVM DID EV
Sbjct: 61  VDEFLYHEALVHPAMVQVVQAGGIPRRVLVLGGAEGATLREVLRWRSVEQVVMVDIDGEV 120

Query: 139 VEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197
           V  C+ +L  +++ +F DPR+E+VI DA   L+     +DVI+ DL+DPIE GP Y+L+T
Sbjct: 121 VAACREHLPEMHQGSFEDPRVEVVIADALDFLQETGPIWDVILSDLSDPIESGPAYRLFT 180

Query: 198 KSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPS 254
           + F+   ++ +L P+G F  QAGP G   +  HT     I  TL+ VF  V PY+ + P+
Sbjct: 181 QEFFR-QIRSKLQPDGAFTIQAGPTGPVELHQHTR----IVRTLKTVFAAVQPYAIYAPT 235

Query: 255 FADTWGWIMASDSPFT--LSAEELDMKVKKNI---KGENRYLDGKTISSSSTLSKAVRKS 309
           +    G+ +A+  P +     E++D  + + +   +G  +++DG T+     +   +R++
Sbjct: 236 YGGPLGFALAAQDPISPRPEPEQIDQILSQQLDPERGALQFIDGITLLGLYQVPAHLRRA 295

Query: 310 LDNETQVYT 318
           +  ET VYT
Sbjct: 296 IAAETVVYT 304

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9HV34|SPEE2_PSEAE Spermidine synthase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=speE2 PE=3 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 171/287 (59%), Gaps = 12/287 (4%)

Query: 41  RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH 100
           ++ + L  +L+ G TR+Q++ + DT  + + L++DG +QSAE DE +YHE LV PA+L H
Sbjct: 43  QYVYRLRRVLYQGRTRWQNVLIADTYNYDRVLMLDGAIQSAESDESLYHELLVQPAMLAH 102

Query: 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLE 159
             P+ + I+GGGEG+T RE+L H +V + VM D+D E+VE C+ +L   ++ AF DPR E
Sbjct: 103 DEPRDVLIIGGGEGATLREVLSHASVRRAVMVDLDRELVELCREHLFQWHQGAFDDPRCE 162

Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
           L+  D RA LE     YDV+I D+ D ++ GP   LYT+ FYE ++  RL P G+   Q 
Sbjct: 163 LLAEDGRAYLERDPSLYDVVIIDVVDMLDNGPAQALYTRQFYE-LLHSRLRPGGVVAVQ- 220

Query: 220 GPAGI-FSHTE--VFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFT--LSAE 274
              G+ FSH++    + +  TLR VF  V  Y A +PSF  +WG+++ASD   T    AE
Sbjct: 221 ---GLEFSHSDDKPHAALARTLRSVFSQVHSYRATVPSFLSSWGFLLASDWLDTNHWQAE 277

Query: 275 ELDMKVKKNIKG-ENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEG 320
           ++D ++++ +      +LDG  + +   + +  R  L     V  +G
Sbjct: 278 DIDRRIERKLGPLWLDHLDGDYLKACFVMDRETRFLLAQPGPVLEDG 324

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q4JAZ8|SPEE_SULAC Probable spermidine synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=speE PE=3 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 165/277 (59%), Gaps = 6/277 (2%)

Query: 45  ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104
           A+  IL    + +Q + L +   FGKAL+IDGK+QS   DEFIYHESLVHP L+   +P+
Sbjct: 20  AIKRILIEERSEFQRVILAELFRFGKALIIDGKIQSTLADEFIYHESLVHPLLISLEDPE 79

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
            I I+GGGEG+T RE LR+K+V KV M DID  V++F K  L   +  +F D R  L+I 
Sbjct: 80  NILILGGGEGATLREALRYKSVRKVTMVDIDPVVIKFAKQNLQEWHMGSFDDSRTNLIIG 139

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           D    ++   E Y+ II DL DPI+  P   LYT  FY   +K  + P G  VTQA    
Sbjct: 140 DGYKFVKETNEKYNAIILDLTDPIQDSPSQLLYTSEFYR-DLKSIITPNGGLVTQATSPS 198

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD--SPFTLSAEELDMKVK 281
            FS  + F+ IY+TL+ VFK V     ++PSF   WG+I ASD  +P  L+  +++ ++K
Sbjct: 199 -FS-LDTFAIIYSTLKTVFKNVSAGITYVPSFDGLWGFIYASDVTNPAHLNRNQINDRIK 256

Query: 282 KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYT 318
           + + G  R+ DG+T      + K +R+ ++NE +V T
Sbjct: 257 ERVTGSLRFYDGETHEMLFRVPKYIREKIENEKRVST 293

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9UXE4|SPEE_SULSO Probable spermidine synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=speE PE=3 SV=1

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/282 (42%), Positives = 168/282 (59%), Gaps = 5/282 (1%)

Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP-K 104
           +  +L   +T YQ + L++   FGK L+IDGK+QS   DE IYHE LVHP LL    P K
Sbjct: 21  IEKVLAEEKTPYQHVTLVEFTRFGKGLIIDGKVQSTLYDEHIYHELLVHPLLLSLTKPPK 80

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
           ++ I+GGGEG+T RE+L++K+VEK VM DIDE+V+EF K YL   ++ AF D R  LVI 
Sbjct: 81  SVLILGGGEGATLREVLKYKSVEKAVMVDIDEKVIEFAKKYLYEWHQGAFEDKRTNLVIT 140

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           D    ++  KE YD II DL DPI+    Y LYTK FYE  ++  LN  G  VTQA    
Sbjct: 141 DGLKFIKETKEKYDAIILDLTDPIKNSTSYMLYTKEFYE-KLREILNERGGIVTQATSPS 199

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKN 283
            FS  EV+  IYNT+++VFK       ++ SF   WG++     P  LS +E+D K+ + 
Sbjct: 200 -FS-LEVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVDSKINER 257

Query: 284 IKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFI 325
           I G+ R+ DG +   S +L K ++      T++ TE    ++
Sbjct: 258 IDGQLRFYDGYSHKISFSLPKNIKSEFQKITKISTEKDPIYV 299

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
225432624	329	PREDICTED: thermospermine synthase ACAUL	0.976	1.0	0.849	1e-169
444436449	334	SPDSY-like protein [Eucalyptus cladocaly	0.988	0.997	0.827	1e-168
224102051	338	predicted protein [Populus trichocarpa]	1.0	0.997	0.846	1e-166
449433323	338	PREDICTED: thermospermine synthase ACAUL	0.997	0.994	0.813	1e-165
118484280	338	unknown [Populus trichocarpa]	1.0	0.997	0.843	1e-165
255551457	336	spermine synthase, putative [Ricinus com	0.991	0.994	0.825	1e-165
356536017	334	PREDICTED: thermospermine synthase ACAUL	0.976	0.985	0.815	1e-161
255648363	334	unknown [Glycine max]	0.976	0.985	0.812	1e-160
359807232	334	uncharacterized protein LOC100801533 [Gl	0.976	0.985	0.809	1e-160
388492066	335	unknown [Lotus japonicus]	0.976	0.982	0.795	1e-158

>gi|225432624|ref|XP_002281882.1| PREDICTED: thermospermine synthase ACAULIS5 [Vitis vinifera] gi|297737031|emb|CBI26232.3| unnamed protein product [Vitis vinifera]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/333 (84%), Positives = 310/333 (93%), Gaps = 4/333 (1%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+ISCSNG    N  + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG T+YQDI
Sbjct: 1   MGDISCSNG----NEVNGKSHSLAGYRKSCWYEEEIEENLRWCFALNSILHTGATQYQDI 56

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALLHHPNPK+IFIMGGGEGSTAREI
Sbjct: 57  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNPKSIFIMGGGEGSTAREI 116

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYLVVN+EAF DPRLELVINDARAELESR+E +DVII
Sbjct: 117 LRHKTVEKVVMCDIDEEVVDFCKSYLVVNREAFCDPRLELVINDARAELESREECFDVII 176

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCY+LYTKSFYE  VKPRL+P GIFVTQAGPAG+FSHTEVFSCI+NTLRQ
Sbjct: 177 GDLADPIEGGPCYQLYTKSFYESTVKPRLSPGGIFVTQAGPAGVFSHTEVFSCIHNTLRQ 236

Query: 241 VFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSS 300
           VFK+VV YSAHIPSFAD WGW+MASDSPF L+AEELD+++K+ IKGENRY+DGKT SS+S
Sbjct: 237 VFKHVVAYSAHIPSFADIWGWVMASDSPFLLNAEELDLRMKQRIKGENRYIDGKTFSSAS 296

Query: 301 TLSKAVRKSLDNETQVYTEGSARFIYGYGSALK 333
           TLSK VR SLDNETQVYTEG+ARFIYG+G+ALK
Sbjct: 297 TLSKVVRTSLDNETQVYTEGTARFIYGHGTALK 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444436449|gb|AGE09592.1| SPDSY-like protein [Eucalyptus cladocalyx]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/336 (82%), Positives = 310/336 (92%), Gaps = 3/336 (0%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           MG+IS SNGIS  NG + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG +++QDI
Sbjct: 1   MGDISVSNGISNGNGVNGKSHSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASQFQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALL+HPNPKT+FIMGGGEGSTAREI
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLYHPNPKTLFIMGGGEGSTAREI 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHK VEKV MCDIDEEVV+FC+SYLVVN+EAF DPRLEL+INDARAELESRKE +DVII
Sbjct: 121 LRHKAVEKVSMCDIDEEVVDFCRSYLVVNREAFCDPRLELIINDARAELESRKECFDVII 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLTHNGIFVTQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSS 300
           VFKYVVPYSAHIPS+ADTWGW+MASD+PF LSAEE D+++K+ IKGENRYLDG+T +S+S
Sbjct: 241 VFKYVVPYSAHIPSYADTWGWVMASDAPFCLSAEEFDLRMKQRIKGENRYLDGRTFASAS 300

Query: 301 TLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNR 336
           TLSKAVR SL+NET VYTEG+ARFIYG+G   +QN+
Sbjct: 301 TLSKAVRTSLENETHVYTEGAARFIYGHG---RQNQ 333

Source: Eucalyptus cladocalyx

Species: Eucalyptus cladocalyx

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102051|ref|XP_002312526.1| predicted protein [Populus trichocarpa] gi|222852346|gb|EEE89893.1| predicted protein [Populus trichocarpa]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 286/338 (84%), Positives = 310/338 (91%), Gaps = 1/338 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSS 299
           QVFKYVVPYSAHIPSFADTWGW+MASD+PFTLSA+ELD ++K+ IKGENRYLDGKT SS+
Sbjct: 241 QVFKYVVPYSAHIPSFADTWGWVMASDTPFTLSADELDSRIKQRIKGENRYLDGKTFSSA 300

Query: 300 STLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA 337
           STLSKAVRKSLDNET VYTEG+ARFIYG+GS  KQN+A
Sbjct: 301 STLSKAVRKSLDNETHVYTEGTARFIYGHGSVQKQNQA 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433323|ref|XP_004134447.1| PREDICTED: thermospermine synthase ACAULIS5-like [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/337 (81%), Positives = 306/337 (90%), Gaps = 1/337 (0%)

Query: 1   MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
           M ++S +N ++  N    K  +L GYRKSCWYEEEIEENLRWSFALNSILHTG ++YQDI
Sbjct: 1   MADVSSANLVNNGNELIEKGHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDI 60

Query: 61  ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
           ALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLHHPNPK+IFIMGGGEGSTARE+
Sbjct: 61  ALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTAREL 120

Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
           LRHKTVEKVVMCDIDEEVV+FCKSYL+VNKEAF DPRLEL+INDARAELE+R E YDVI+
Sbjct: 121 LRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIV 180

Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
           GDLADPIEGGPCYKLYTKSFYE+ VKPRL  +GIF+TQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQ 240

Query: 241 VFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSS 300
           VFKYVVPYSAHIPSFADTWGW+MASD+PF L+A++LD ++K+ I GEN+Y DGKT SS+S
Sbjct: 241 VFKYVVPYSAHIPSFADTWGWVMASDTPFNLNADDLDQRIKQRITGENKYFDGKTFSSAS 300

Query: 301 TLSKAVRKSLDNETQVYTEGSARFIYGYGS-ALKQNR 336
           TLSKAVRKSLDNETQVYTE +ARFIYGYG+ A K N+
Sbjct: 301 TLSKAVRKSLDNETQVYTEETARFIYGYGAEACKLNQ 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484280|gb|ABK94019.1| unknown [Populus trichocarpa]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/338 (84%), Positives = 309/338 (91%), Gaps = 1/338 (0%)

Query: 1   MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
           MGEISCSNGI   NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1   MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61  IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           ILRHKT  KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE  KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADPIEGGPCYKLYTKSFYE  VKP+LN  GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240

Query: 240 QVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSS 299
           QVFKYVVPYSAHIPSFADTWGW+MASD+PFTLSA+E D ++K+ IKGENRYLDGKT SS+
Sbjct: 241 QVFKYVVPYSAHIPSFADTWGWVMASDTPFTLSADESDSRIKQRIKGENRYLDGKTFSSA 300

Query: 300 STLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA 337
           STLSKAVRKSLDNET VYTEG+ARFIYG+GS  KQN+A
Sbjct: 301 STLSKAVRKSLDNETHVYTEGTARFIYGHGSVQKQNQA 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551457|ref|XP_002516774.1| spermine synthase, putative [Ricinus communis] gi|223543862|gb|EEF45388.1| spermine synthase, putative [Ricinus communis]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/339 (82%), Positives = 307/339 (90%), Gaps = 5/339 (1%)

Query: 1   MGEISCSNGISQA-NGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MG+I+CSNGIS   NG + K + +  GYRKSCWYEEEIEENLRW FALNSILHTG ++YQ
Sbjct: 1   MGDIACSNGISNGTNGVNGKGHPSPNGYRKSCWYEEEIEENLRWCFALNSILHTGVSQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAEVDEFIYHE LVHPA+LHH N KTIFIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHECLVHPAILHHSNSKTIFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           EILRH+TVEKVVMCDIDEEVV+FCK+YL VN+EAF DPRLE++INDAR ELESRKE YDV
Sbjct: 121 EILRHRTVEKVVMCDIDEEVVDFCKAYLAVNREAFCDPRLEIIINDARNELESRKECYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPIEGGPCYKLYTKSFYE  VKPRLN  GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIEGGPCYKLYTKSFYELTVKPRLNQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISS 298
           RQVFKYVVPYSAHIPS+ADTWGW+MASDSP  L+A++LD+++K+ IKGENRYLDGKT SS
Sbjct: 241 RQVFKYVVPYSAHIPSYADTWGWVMASDSPLVLNADDLDLRIKQKIKGENRYLDGKTFSS 300

Query: 299 SSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQNRA 337
           +STL KAVRKSLDNET VYTEG+ARFIYG+G   KQ+ A
Sbjct: 301 ASTLCKAVRKSLDNETHVYTEGTARFIYGHG---KQDHA 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536017|ref|XP_003536537.1| PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/331 (81%), Positives = 297/331 (89%), Gaps = 2/331 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISS 298
           RQVFKYVVPYSAHIPS+AD WGW+MASDSP  LSA+ELD++++  IKGENRYLDGKT +S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMASDSPLDLSADELDLRMRHRIKGENRYLDGKTFTS 300

Query: 299 SSTLSKAVRKSLDNETQVYTEGSARFIYGYG 329
           +STLSK VR SLDNET VYTE SARFIYG+G
Sbjct: 301 ASTLSKTVRNSLDNETHVYTEESARFIYGHG 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648363|gb|ACU24632.1| unknown [Glycine max]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/331 (81%), Positives = 296/331 (89%), Gaps = 2/331 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIG LADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGGLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISS 298
           RQVFKYVVPYSAHIPS+AD WGW+MASDSP  LSA+ELD++++  IKGENRYLDGKT +S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMASDSPLDLSADELDLRMRHRIKGENRYLDGKTFTS 300

Query: 299 SSTLSKAVRKSLDNETQVYTEGSARFIYGYG 329
           +STLSK VR SLDNET VYTE SARFIYG+G
Sbjct: 301 ASTLSKTVRNSLDNETHVYTEESARFIYGHG 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807232|ref|NP_001241620.1| uncharacterized protein LOC100801533 [Glycine max] gi|255644595|gb|ACU22800.1| unknown [Glycine max]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 295/331 (89%), Gaps = 2/331 (0%)

Query: 1   MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
           MGEI+  NGIS  N  G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1   MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60

Query: 59  DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
           DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61  DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120

Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
           E+LRHKT++KVVMCDIDEEVV FCKSY VVNKEAF D RLE+VINDAR ELE+R ESYDV
Sbjct: 121 ELLRHKTIDKVVMCDIDEEVVNFCKSYFVVNKEAFRDTRLEVVINDARVELEARDESYDV 180

Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
           IIGDLADPI+GGPCYKLYTKSFYE +VKPRL   GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240

Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISS 298
           RQVFKYVVPYSAHIPS+AD WGW+MASDSP  LSAEELD++++  IKGEN YLDGKT +S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMASDSPLDLSAEELDLRMRHRIKGENGYLDGKTFTS 300

Query: 299 SSTLSKAVRKSLDNETQVYTEGSARFIYGYG 329
           +STLSK VR SLDNET VYTE SARFIYG+G
Sbjct: 301 ASTLSKTVRNSLDNETHVYTEESARFIYGHG 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492066|gb|AFK34099.1| unknown [Lotus japonicus]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/332 (79%), Positives = 295/332 (88%), Gaps = 3/332 (0%)

Query: 1   MGEISCSNGISQA---NGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRY 57
           MGE++ S+GIS     NG + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++Y
Sbjct: 1   MGEVAFSSGISNGSVNNGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQY 60

Query: 58  QDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117
           QDIALLDTKPFGKALVI GKLQSAE DEFIYHE LVHPALLHHPNPK +FIMGGGEGSTA
Sbjct: 61  QDIALLDTKPFGKALVIVGKLQSAETDEFIYHECLVHPALLHHPNPKNVFIMGGGEGSTA 120

Query: 118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177
           RE+LRHKT++KV+MCDIDEE V FCKSYLVVNKEAF D RLE++INDAR ELE+R+E+YD
Sbjct: 121 RELLRHKTIDKVLMCDIDEEAVNFCKSYLVVNKEAFCDLRLEVIINDARGELEAREENYD 180

Query: 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237
           VI+GDLADPI+GGPCYKLYTKSFYEF VKP+L   GIFVTQAGPAGIFSH EVFSCIYNT
Sbjct: 181 VIVGDLADPIDGGPCYKLYTKSFYEFTVKPKLKQGGIFVTQAGPAGIFSHKEVFSCIYNT 240

Query: 238 LRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTIS 297
           LRQVFKYVVPYSAHIPS AD WGW+MASDSP  LSAEELD+++K+ I GENRYLDGKT S
Sbjct: 241 LRQVFKYVVPYSAHIPSHADIWGWVMASDSPIDLSAEELDLRMKQRILGENRYLDGKTFS 300

Query: 298 SSSTLSKAVRKSLDNETQVYTEGSARFIYGYG 329
           SSSTLSK VR SLDNET VYTE +ARFI+G+G
Sbjct: 301 SSSTLSKTVRNSLDNETHVYTEEAARFIHGHG 332

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2180816	339	ACL5 "ACAULIS 5" [Arabidopsis	0.982	0.976	0.614	2.3e-117
TIGR_CMR|CHY_1240	273	CHY_1240 "spermidine synthase"	0.652	0.805	0.382	3.6e-41
UNIPROTKB|P09158	288	speE "SpeE" [Escherichia coli	0.715	0.836	0.378	2.9e-39
TIGR_CMR|BA_5619	275	BA_5619 "spermidine synthase"	0.709	0.869	0.323	2.6e-38
TIGR_CMR|CHY_1621	277	CHY_1621 "spermidine synthase"	0.750	0.913	0.326	3e-37
CGD|CAL0006284	297	SPE3 [Candida albicans (taxid:	0.753	0.855	0.335	2.1e-36
POMBASE|SPBC12C2.07c	298	SPBC12C2.07c "spermidine synth	0.833	0.942	0.305	3.5e-36
DICTYBASE|DDB_G0268630	284	spsA "Spermidine synthase" [Di	0.810	0.961	0.302	5.7e-36
UNIPROTKB|I3LPB8	302	SRM "Uncharacterized protein"	0.818	0.913	0.310	5.7e-36
MGI|MGI:102690	302	Srm "spermidine synthase" [Mus	0.818	0.913	0.306	4e-35

TAIR|locus:2180816 ACL5 "ACAULIS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 204/332 (61%), Positives = 269/332 (81%)

Query:     3 EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
             E+   NG  + + A +    L   ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct:     6 EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65

Query:    62 LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
             LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct:    66 LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125

Query:   122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
             +H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct:   126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185

Query:   182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
             DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct:   186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245

Query:   242 FKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSST 301
             FKYV  Y+AH+PSFADTWGW+MASD  F +  +E+D ++++ + GE  YL+  +  S++T
Sbjct:   246 FKYVKAYTAHVPSFADTWGWVMASDHEFDVEVDEMDRRIEERVNGELMYLNAPSFVSAAT 305

Query:   302 LSKAVRKSLDNETQVYTEGSARFIYGYGSALK 333
             L+K +  +L+ ET+VY+E +ARFI+G+G A +
Sbjct:   306 LNKTISLALEKETEVYSEENARFIHGHGVAYR 337

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016768 "spermine synthase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010487 "thermospermine synthase activity" evidence=IDA

GO:0048759 "vessel member cell differentiation" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009826 "unidimensional cell growth" evidence=IGI

TIGR_CMR|CHY_1240 CHY_1240 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 86/225 (38%), Positives = 140/225 (62%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             WY E+  EN +  + ++ IL+  +T YQ++A+++   FG++L++D  +Q+ E DE++YHE
Sbjct:     2 WYIEKHNENYQVGWRVSDILYQKKTPYQNLAIVEFAEFGRSLILDDAVQTTEKDEYVYHE 61

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              LVHPA   H +P+   I+GGG+G T RE+L+HKT+EKV + +IDEEV++  K +L    
Sbjct:    62 MLVHPAAFTHKSPRRALIIGGGDGGTLREVLKHKTIEKVDLVEIDEEVIKASKQFLPSLS 121

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             E+F+DPR+E++I+D    ++  K  YD+I  D +DP+  GP   LY++ FY  +    L 
Sbjct:   122 ESFNDPRVEVIIDDGIRYVKKVKNYYDLIFVDASDPV--GPAVVLYSEEFYRSLFDA-LT 178

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
              +GI   Q+     +   ++F  I  TLR +F  V    A +PS+
Sbjct:   179 ADGIAAVQSESPNFYP--DIFVKIVTTLRDIFPKVNVALAPVPSY 221

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

UNIPROTKB|P09158 speE "SpeE" [Escherichia coli K-12 (taxid:83333)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 95/251 (37%), Positives = 141/251 (56%)

Query:    28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
             K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct:     4 KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 62

Query:    88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
             YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct:    63 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 122

Query:   148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
               N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct:   123 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEGC-K 179

Query:   207 PRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD---TWGWIM 263
               LNP GIFV Q G   +     + S  +  L   F  V  Y A IP++     T+ W  
Sbjct:   180 RCLNPGGIFVAQNGVCFLQQEEAIDS--HRKLSHYFSDVGFYQAAIPTYYGGIMTFAWAT 237

Query:   264 ASDSPFTLSAE 274
              +D+   LS E
Sbjct:   238 DNDALRHLSTE 248

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;IMP;IDA

TIGR_CMR|BA_5619 BA_5619 "spermidine synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 80/247 (32%), Positives = 142/247 (57%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+  ++   +  +N  LHT +T +Q + +++T+ FG  L++DG + + E DEF+YHE
Sbjct:     4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
              + H  L  HPNP+ + ++GGG+G   RE+L+H +V+K  + +ID +V+E+ K YL    
Sbjct:    64 MVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIA 123

Query:   151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
              A  + R+E+ + D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct:   124 GALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISKA-LK 180

Query:   211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS-- 267
              +GIFV Q      F+  E+ + ++  ++++F     Y+A+IP++ +  W + + S    
Sbjct:   181 EDGIFVAQTDNPW-FT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLWTFTIGSKKHD 238

Query:   268 PFTLSAE 274
             P  +S E
Sbjct:   239 PLEVSEE 245

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1621 CHY_1621 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 85/260 (32%), Positives = 147/260 (56%)

Query:    31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
             W+ E+   N+  +  +   LHT  T +Q++A+++T  FG+ LV+DG +Q+  VDEF+YHE
Sbjct:     4 WFTEKQTPNVGITCKITRTLHTETTPFQELAVIETLQFGRMLVLDGMVQTTVVDEFVYHE 63

Query:    91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
              + H AL  HPNP+ + ++GGG+G T REI++H  V+K V+ +IDE V+E  K YL  + 
Sbjct:    64 MIAHVALNTHPNPEKVMVIGGGDGGTIREIVKHPKVKKAVLVEIDERVIEVSKQYLPEIA 123

Query:   150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                  +P++E+ + D    ++  K  YDVII D  +P+  GP  +L+++ FY+ V +  L
Sbjct:   124 VALMGNPKVEVRVEDGIKHVKEHKGEYDVIIIDSTEPV--GPAVELFSEDFYKNVYES-L 180

Query:   210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSP 268
               +GI V Q      F + ++    +  + + F     Y A +P++ +  W + + S   
Sbjct:   181 KDDGIMVAQTESP--FFNRDIIKNSFTRIGKNFPITRLYFATVPTYPSGVWTFTLGSKKY 238

Query:   269 FTLSAEELDMKVKKNIKGEN 288
               L+ ++ D+ V  + K  N
Sbjct:   239 DPLAVKKEDIFVDPSNKYYN 258

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

CGD|CAL0006284 SPE3 [Candida albicans (taxid:5476)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 92/274 (33%), Positives = 151/274 (55%)

Query:    28 KSCWYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
             K  W+ E I + + W     S  +  +LH  +++YQD+ +  +  +G  LV+D  +Q  E
Sbjct:    11 KDGWFAE-ISDTM-WPGQAMSLKVEKVLHVEKSKYQDVLVFKSTTYGNVLVLDNCIQVTE 68

Query:    83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
              DEF Y E + H AL  HPNPK   ++GGG+G   REIL+H+++E+  +CDIDE V+E  
Sbjct:    69 RDEFSYQEMITHLALNSHPNPKKALVIGGGDGGVLREILKHESIEEAWLCDIDETVIEVS 128

Query:   143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202
             K YL    +++ DPR  + I D    LE  K  +DVII D +DP EG P   L+ K +++
Sbjct:   129 KKYLPNMAKSYDDPRTRVHIGDGFKFLEEYKNQFDVIITDSSDP-EG-PAESLFQKPYFQ 186

Query:   203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWG 260
              ++K  L  +G+  TQA    ++ H ++ S +     ++F  V  Y+   IP++ + + G
Sbjct:   187 -LLKDALTEKGVITTQA--ENMWIHMDIISKLKKDCNEIFP-VAEYAYTMIPTYPSGSIG 242

Query:   261 WIMASDSPFTLSAEEL-----DMKVKKNIKGENR 289
             +++ S  P    ++ +     D  V KN+K  N+
Sbjct:   243 FMVCSKDPNANVSKPIRFDWSDEFVAKNLKYYNK 276

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

POMBASE|SPBC12C2.07c SPBC12C2.07c "spermidine synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 89/291 (30%), Positives = 158/291 (54%)

Query:    28 KSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
             K  W+ E   +      +  +  +L+ G+++YQD+ + +++ +G  LV+DG +Q+ E DE
Sbjct:    12 KDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDE 71

Query:    86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
             F Y E + H AL  HPNPK + ++GGG+G   RE+++H+ VE+ ++CDIDE+V++  K Y
Sbjct:    72 FSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131

Query:   146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
             L      F+ P++++ I D    L+  + ++DVII D +DP   GP   L+ K +++ ++
Sbjct:   132 LPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDP--DGPAEALFQKPYFQ-LL 188

Query:   206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMA 264
                L   G+  TQA    I  H  V S +   ++ VF  V      IP++ + + G+++A
Sbjct:   189 SDALRGGGVITTQAECMWI--HLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVA 246

Query:   265 S-DSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNET 314
             S D+   LS        ++  K   +Y + +  ++S  L    R  +D  T
Sbjct:   247 SKDASIDLSKPLRKWSPEEENK-LCKYYNSEIHAASFVLPTFARDVVDKAT 296

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0015940 "pantothenate biosynthetic process" evidence=ISO

DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 86/284 (30%), Positives = 150/284 (52%)

Query:    31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
             W+ E  E      +S  +  +LH  ++ YQD  +  +K FG  LV+DG +Q+ E DEF Y
Sbjct:     8 WFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAY 67

Query:    89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
              E + H  L  HP+PK + ++GGG+G   RE+++H  VE V +C+ID+ V+E  +++L  
Sbjct:    68 QEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPN 127

Query:   149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
              +  F  P++ L I D    +  RK  +DVII D +DPI  GP   L+ +++YE ++K  
Sbjct:   128 MRVGFDHPKVTLFIGDGMEFMRQRKGEFDVIITDSSDPI--GPAQGLFERAYYE-LLKAA 184

Query:   209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS 267
             L P GI  +Q     ++ H +    +    ++++  V      IPS+   + G+I+ S  
Sbjct:   185 LAPGGIVCSQC--ESMWLHLDTIKGLTTFCKELYPNVEYAYTSIPSYPGGSIGFILCSLG 242

Query:   268 PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311
               T +      ++   ++ + +Y +G+   +S  L +   K L+
Sbjct:   243 GSTKAPIR---EITPEVQSQMQYYNGEVHKASFVLPQFAAKKLN 283

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008295 "spermidine biosynthetic process" evidence=IEA

UNIPROTKB|I3LPB8 SRM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 89/287 (31%), Positives = 157/287 (54%)

Query:    31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
             W+ E   +      S  +  +LH   +RYQDI +  +K +G  LV+DG +Q  E DEF Y
Sbjct:    20 WFHETCSLWPGQALSLQVEQLLHHQRSRYQDILVFRSKSYGNVLVLDGVIQCTERDEFSY 79

Query:    89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
              E + +  L  HPNP+ + I+GGG+G   RE+++H  VE VV C+IDE+V++  K +L  
Sbjct:    80 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPAVESVVQCEIDEDVIQVSKKFLPG 139

Query:   149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
                ++S  +L L + D    ++  ++++DVII D +DP+  GP   L+ +S+Y+ ++K  
Sbjct:   140 MAVSYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQ-LMKTA 196

Query:   209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMASD 266
             L  EGI   Q G    + H ++   +    + +F  VV Y+   IP++ +   G+++ S 
Sbjct:   197 LKEEGILCCQ-GECQ-WLHLDLIKEMRQFCKSLFP-VVDYAYCTIPTYPSGQIGFMLCSK 253

Query:   267 SPFTLSAEELDMKVKKNIKGEN-RYLDGKTISSSSTLSKAVRKSLDN 312
             +P T   E + +  +K ++    RY +     ++  L +  RK+L++
Sbjct:   254 NPSTNFREPVQLLTQKQVEQRQLRYYNSDVHRAAFVLPEFARKALND 300

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

MGI|MGI:102690 Srm "spermidine synthase" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 88/287 (30%), Positives = 157/287 (54%)

Query:    31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
             W+ E   +      S  +  +LH   +RYQDI +  +K +G  LV+DG +Q  E DEF Y
Sbjct:    20 WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 79

Query:    89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
              E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C+IDE+V+E  K +L  
Sbjct:    80 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPG 139

Query:   149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
                 FS  +L L + D    ++  ++++DVII D +DP+  GP   L+ +S+Y+ ++K  
Sbjct:   140 MAVGFSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQ-LMKTA 196

Query:   209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMASD 266
             L  +GI   Q G    + H ++   + +  + +F  VV Y+   IP++ +   G+++ S 
Sbjct:   197 LKEDGILCCQ-GECQ-WLHLDLIKEMRHFCKSLFP-VVDYAYCSIPTYPSGQIGFMLCSK 253

Query:   267 SPFTLSAEELDMKVKKNIKG-ENRYLDGKTISSSSTLSKAVRKSLDN 312
             +P T   E +    +  ++  + +Y +     ++  L +  RK+L++
Sbjct:   254 NPSTNFREPVQQLTQAQVEQMQLKYYNSDMHRAAFVLPEFTRKALND 300

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5SK28	SPEE_THET8	2, ., 5, ., 1, ., 1, 6	0.4226	0.8367	0.8980	yes	no
Q9S7X6	ACL5_ARATH	2, ., 5, ., 1, ., 7, 9	0.6126	0.9851	0.9793	yes	no
B7MNY3	SPEE_ECO81	2, ., 5, ., 1, ., 1, 6	0.3436	0.8249	0.9652	yes	no
A8GJ06	SPEE_SERP5	2, ., 5, ., 1, ., 1, 6	0.3608	0.8189	0.9616	yes	no
B7MBA4	SPEE_ECO45	2, ., 5, ., 1, ., 1, 6	0.3436	0.8249	0.9652	yes	no
A1A7G7	SPEE_ECOK1	2, ., 5, ., 1, ., 1, 6	0.3436	0.8249	0.9652	yes	no
B7UIG9	SPEE_ECO27	2, ., 5, ., 1, ., 1, 6	0.3436	0.8249	0.9652	yes	no
Q72K55	SPEE_THET2	2, ., 5, ., 1, ., 1, 6	0.4226	0.8367	0.8980	yes	no
Q4JAZ8	SPEE_SULAC	2, ., 5, ., 1, ., 1, 6	0.4187	0.8041	0.8973	yes	no
Q1RG70	SPEE_ECOUT	2, ., 5, ., 1, ., 1, 6	0.3436	0.8249	0.9652	yes	no
Q2JQ57	SPEE_SYNJB	2, ., 5, ., 1, ., 1, 6	0.3624	0.8635	0.9326	yes	no
Q9YE02	SPEE_AERPE	2, ., 5, ., 1, ., 1, 6	0.3911	0.9020	0.9681	yes	no
Q9UXE4	SPEE_SULSO	2, ., 5, ., 1, ., 1, 6	0.4290	0.8219	0.9202	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.79	0.991
4th Layer	2.5.1.16	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
PLN02823	336	PLN02823, PLN02823, spermine synthase	0.0
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	3e-91
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	9e-76
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	5e-75
TIGR00417	271	TIGR00417, speE, spermidine synthase	3e-71
PRK03612	521	PRK03612, PRK03612, spermidine synthase; Provision	2e-66
COG4262	508	COG4262, COG4262, Predicted spermidine synthase wi	4e-51
PLN02366	308	PLN02366, PLN02366, spermidine synthase	4e-48
PRK01581	374	PRK01581, speE, spermidine synthase; Validated	3e-36
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-08
PRK04457	262	PRK04457, PRK04457, spermidine synthase; Provision	1e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	5e-07
PRK00536	262	PRK00536, speE, spermidine synthase; Provisional	3e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-05
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	0.002

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score =  629 bits (1625), Expect = 0.0
 Identities = 241/336 (71%), Positives = 283/336 (84%), Gaps = 2/336 (0%)

Query: 1   MGEISCSNGISQANGADAKNVA-LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
             EI   NG S          A  + Y KS WYEEEIE++LRWS+A+NS+LHTG + +QD
Sbjct: 1   AVEIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQD 60

Query: 60  IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
           IAL+DTKPFGK L+IDGK+QSAE DEF+YHESLVHPALLHHPNPKT+FIMGGGEGSTARE
Sbjct: 61  IALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTARE 120

Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
           +LRHKTVEKVVMCDID+EVV+FC+ +L VN+EAF D RLEL+INDARAELE R E +DVI
Sbjct: 121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180

Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
           IGDLADP+EGGPCY+LYTKSFYE +VKP+LNP GIFVTQAGPAGI +H EVFS IYNTLR
Sbjct: 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR 240

Query: 240 QVFKYVVPYSAHIPSFADTWGWIMASDSPF-TLSAEELDMKVKKNIKGENRYLDGKTISS 298
           QVFKYVVPY+AH+PSFADTWGW+MASD PF  LSAEELD ++K+ I GE +YLDG+T SS
Sbjct: 241 QVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSRIKERIDGELKYLDGETFSS 300

Query: 299 SSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQ 334
           +  L+K VR++L NET VYTE +ARFI+G+G+A K 
Sbjct: 301 AFALNKTVRQALANETHVYTEENARFIHGHGTAAKA 336

Length = 336

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score =  273 bits (701), Expect = 3e-91
 Identities = 102/285 (35%), Positives = 159/285 (55%), Gaps = 10/285 (3%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E + +N   SF +  +L+  ++ +Q I + +T  FG+ L +DG + + E DEFIYHE
Sbjct: 5   WFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVN 149
            + H  L  HPNPK + I+GGG+G T RE+L+H +VEK+ + +IDE VVE C+ YL  + 
Sbjct: 65  MMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA 124

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
             A+ DPR+ELVI D    +   + S+DVII D  DP+  GP   L+TK FYE   +  L
Sbjct: 125 GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKR-AL 181

Query: 210 NPEGIFVTQAG-PAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS 267
             +GIFV Q+G P   F   +    ++  L++VF  V PY A IP++ +  W +  AS +
Sbjct: 182 KEDGIFVAQSGSP---FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238

Query: 268 -PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311
                   ++          + RY + +   ++  L + V+ +L 
Sbjct: 239 DDLKFLPLDVIEARFAERGIKTRYYNPELHKAAFALPQFVKDALK 283

Length = 283

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score =  234 bits (598), Expect = 9e-76
 Identities = 106/282 (37%), Positives = 158/282 (56%), Gaps = 8/282 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  +  LR  F +  +L+  ++ YQDI + +++ FGK LV+DG +Q  E DEFIYHE
Sbjct: 5   WFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHE 64

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  LL HPNPK + I+GGG+G T RE+L+H  VE++ M +ID  V+E  + YL    
Sbjct: 65  MLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+E++I+D    L   +E +DVII D  DP+  GP   L+T+ FYE   +  L 
Sbjct: 125 GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV--GPAEALFTEEFYE-GCRRALK 181

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSPF 269
            +GIFV QAG    F   E  +  Y  + +VF  V PY A IP++ +  WG+I+AS +  
Sbjct: 182 EDGIFVAQAG--SPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNK- 238

Query: 270 TLSAEELDMKVKKNIKGE-NRYLDGKTISSSSTLSKAVRKSL 310
               + LD    + +     +Y +     ++  L K ++  L
Sbjct: 239 AHPLKSLDALQARALALLTLKYYNEDIHDAAFALPKNLQDEL 280

Length = 282

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score =  230 bits (589), Expect = 5e-75
 Identities = 92/240 (38%), Positives = 142/240 (59%), Gaps = 8/240 (3%)

Query: 31  WYEEEIEEN--LRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E ++    L   + +  +L+  ++ YQDI + ++K FGK LV+DG++Q  E DEFIY
Sbjct: 2   WFTEILDLWPGLAVEYKVEKVLYEEKSEYQDIEIFESKTFGKILVLDGRVQLTERDEFIY 61

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  L  HPNPK + I+GGG+G   RE+++H +VEK+ + +IDE+V+EF K +L  
Sbjct: 62  HEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPS 121

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               F DPR+++VI D    L+     +DVII D  DP+  GP   L++K FY+ + +  
Sbjct: 122 LAGGFDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTDPV--GPAENLFSKEFYDLLKR-A 178

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSP 268
           L  +G+FVTQA     + H E+   I    ++VF  V+PY   +P++    GW  A  S 
Sbjct: 179 LKEDGVFVTQAE--SPWLHLELIINILKNGKKVFPVVMPYVVPVPTYPS-GGWGFAVCSK 235

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score =  222 bits (567), Expect = 3e-71
 Identities = 95/275 (34%), Positives = 159/275 (57%), Gaps = 6/275 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W+ E  ++N   +  ++ +L+  ++ +QD+ + +T+ FG  LV+DG +Q+ E DEFIYHE
Sbjct: 1   WFTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNPK + ++GGG+G   RE+L+HK+VE   + DIDE+V+E  + YL    
Sbjct: 61  MITHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA 120

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
            ++ DPR++LVI+D    L   + ++DVII D  DP+  GP   L+TK FYE ++K  LN
Sbjct: 121 GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPV--GPAETLFTKEFYE-LLKKALN 177

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSPF 269
           P+GIFV Q+     +   E+   +   L++ F     Y+A IP++ +  W + +AS + +
Sbjct: 178 PDGIFVAQSE--SPWLQLELIIDLKRKLKEAFPITEYYTAAIPTYPSGLWTFTIASKNKY 235

Query: 270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSK 304
                E+     +   G+ +Y +     ++  L K
Sbjct: 236 RPLEVEIRRIKFEAEDGKTKYYNPDIHKAAFVLPK 270

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional

 Score =  217 bits (555), Expect = 2e-66
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIAL---LDTKPFGKALVIDGKLQSAEVDEFI 87
              + IE         + +++  +T YQ I +    + +     L ++G+LQ +  DE+ 
Sbjct: 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYR 282

Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE+LVHPA+     P+ + ++GGG+G   RE+L++  VE+V + D+D  + E  ++   
Sbjct: 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342

Query: 148 V---NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP--IEGGPCYKLYTKSFYE 202
           +   N  A  DPR+ +V +DA   L    E +DVII DL DP     G   KLY+  FY 
Sbjct: 343 LRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALG---KLYSVEFYR 399

Query: 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWI 262
            ++K RL P+G+ V Q+     +   + F  I  TL        PY  ++PSF + WG++
Sbjct: 400 -LLKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGLATTPYHVNVPSFGE-WGFV 455

Query: 263 MASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRK 308
           +A        A   ++ V        R+LD   ++++    K +R+
Sbjct: 456 LAGAGARPPLAVPTELPVP------LRFLDPALLAAAFVFPKDMRR 495

Length = 521

>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

 Score =  176 bits (449), Expect = 4e-51
 Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 20/261 (7%)

Query: 49  ILHTGETRYQDIALLDTKPFGK--ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           I+H  ++ YQ I +      G    L +DG LQ +  DE+ YHESLV+PAL      +++
Sbjct: 237 IIHAIQSPYQRIVVTR---RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSV 293

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVIN 163
            ++GGG+G   RE+L++  VE++ + D+D  ++E      V   +N+ +FSDPR+ +V +
Sbjct: 294 LVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND 353

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           DA   L +  + +DV+I DL DP       +LY+  FY  ++   L   G+ V QAG   
Sbjct: 354 DAFQWLRTAADMFDVVIVDLPDP-STPSIGRLYSVEFYR-LLSRHLAETGLMVVQAGSP- 410

Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEELDMKVKKN 283
            +    VF  I  T++     V PY  H+P+F + WG+I+A+           D +    
Sbjct: 411 -YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGD-------ADFEPPTE 461

Query: 284 IKGENRYLDGKTISSSSTLSK 304
            +   R+LD + + ++     
Sbjct: 462 YRPPTRFLDAEVLHAAFVFGP 482

Length = 508

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score =  163 bits (415), Expect = 4e-48
 Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 7/215 (3%)

Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ +QD+ + ++  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 32  SLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   REI RH +VE++ +C+ID+ V++  K +       F DPR+ L I
Sbjct: 92  PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI 151

Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D    L++  E +YD II D +DP+  GP  +L+ K F+E V +  L P G+  TQA  
Sbjct: 152 GDGVEFLKNAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARA-LRPGGVVCTQA-- 206

Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPY-SAHIPSF 255
             ++ H ++   +    R+ FK  V Y    +P++
Sbjct: 207 ESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTY 241

Length = 308

>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated

 Score =  134 bits (338), Expect = 3e-36
 Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 12/235 (5%)

Query: 47  NSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
           ++ L   ++ YQ+I LL        L +D +LQ + VDE IYHE+LVHP +    +PK +
Sbjct: 97  HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRV 154

Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVIN 163
            I+GGG+G   RE+L+++TV  V + D+D  ++   ++    + +NK AF D R+ + + 
Sbjct: 155 LILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC 214

Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPA 222
           DA+  L S    YDVII D  DP        LYT   +  +    L  +G FV Q+  PA
Sbjct: 215 DAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFARIAT-FLTEDGAFVCQSNSPA 272

Query: 223 GIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTL-SAEEL 276
                  V+  I NT+      V  Y   +PSF   WG+ +A++S + L   E+L
Sbjct: 273 ---DAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLDQIEQL 324

Length = 374

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169
           G G G+ A  +       +V   DI    +E  +        A     +E++  DA    
Sbjct: 6   GCGTGALALALASGP-GARVTGVDISPVALELARK----AAAALLADNVEVLKGDAEELP 60

Query: 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
               ES+DVII D                 F E   +  L P G+ V  
Sbjct: 61  PEADESFDVIISDPP-----LHHLVEDLARFLE-EARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 97  LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP 156
           LL +P P+ I  +G G GS A+ I  +    +    +I+ +V+   +++  +     +  
Sbjct: 61  LLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL---PENGE 117

Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           R E++  D    +   + S DVI+ D  D    G    L T+ F++   +  L+ +GIFV
Sbjct: 118 RFEVIEADGAEYIAVHRHSTDVILVDGFD--GEGIIDALCTQPFFD-DCRNALSSDGIFV 174

Query: 217 T 217
            
Sbjct: 175 V 175

Length = 262

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +   G G G+      R     +VV  ++D E     +  L     A   PR+ +V+
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRL---ALAGLAPRVRVVV 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFY-EFVVK--PRLNPEGIFV 216
            DAR  LE    S+D+++G+   P           +  Y  F+      L P G+ V
Sbjct: 58  GDARELLELPDGSFDLVLGNP--PYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L       F++ E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNKQLL---FKNFLHIE 58

Query: 91  S--LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           S  L H         K + I+ G +   A ++ ++ T   V     DE++++   S+   
Sbjct: 59  SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGD-LADPIEGGPCYKLYTKSFYEFVVKP 207
             E  ++         A+  L+   + YD+II     D  +                +K 
Sbjct: 117 FHEVKNNKNFTH----AKQLLDLDIKKYDLIICLQEPDIHKIDG-------------LKR 159

Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMAS 265
            L  +G+F++ A                  +   F   +P+ A +   ++  G+I AS
Sbjct: 160 MLKEDGVFISVA--KHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNK-GYIYAS 214

Length = 262

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
              +  +G G GS A E+ R     +V   D+  E++E  +     N +    PR+  V 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE----NAKLALGPRITFVQ 57

Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
            DA   L+   E +D +         GG   +L         +   L P G  V  A
Sbjct: 58  GDAPDALDL-LEGFDAVFIGGG----GGDLLELLDA------LASLLKPGGRLVLNA 103

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)

Query: 102 NPKTIFIMGGGEG-STAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
            PK I  +G   G S       L      ++   + DEE  E  +  L    EA  D R+
Sbjct: 59  GPKRILEIGTAIGYSALWMALALPDDG--RLTTIERDEERAEIARENL---AEAGVDDRI 113

Query: 159 ELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           EL++     ++ SR    S+D++  D AD        K     + E  + P L P G+ V
Sbjct: 114 ELLLGGDALDVLSRLLDGSFDLVFID-AD--------KADYPEYLERAL-PLLRPGGLIV 163

Query: 217 T 217
            
Sbjct: 164 A 164

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PLN02823	336	spermine synthase	100.0
PRK00536	262	speE spermidine synthase; Provisional	100.0
PLN02366	308	spermidine synthase	100.0
PRK00811	283	spermidine synthase; Provisional	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	100.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	100.0
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	100.0
PRK03612	521	spermidine synthase; Provisional	100.0
PRK01581	374	speE spermidine synthase; Validated	100.0
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	100.0
COG4262	508	Predicted spermidine synthase with an N-terminal m	100.0
PRK04457	262	spermidine synthase; Provisional	99.97
COG2521	287	Predicted archaeal methyltransferase [General func	99.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.54
KOG2352	482	consensus Predicted spermine/spermidine synthase [	99.47
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.38
COG4123	248	Predicted O-methyltransferase [General function pr	99.38
COG4122	219	Predicted O-methyltransferase [General function pr	99.37
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.37
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.36
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.34
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.34
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.33
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.3
PLN02476	278	O-methyltransferase	99.3
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.29
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.27
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.27
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.26
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.25
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.24
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.24
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.21
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.21
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.21
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.21
COG2890	280	HemK Methylase of polypeptide chain release factor	99.21
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.2
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.19
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.19
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.19
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.18
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.18
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.18
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.18
PRK07402	196	precorrin-6B methylase; Provisional	99.17
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.17
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.17
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.16
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.15
PLN03075	296	nicotianamine synthase; Provisional	99.15
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.15
PLN02672	1082	methionine S-methyltransferase	99.13
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.12
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.12
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.11
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.11
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.09
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.09
PRK14967	223	putative methyltransferase; Provisional	99.09
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.06
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.05
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.05
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.04
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.04
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.04
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.04
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.04
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.03
PLN02244	340	tocopherol O-methyltransferase	99.03
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.03
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.02
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.01
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.01
PRK11207	197	tellurite resistance protein TehB; Provisional	99.0
PRK04266	226	fibrillarin; Provisional	99.0
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.99
TIGR00438	188	rrmJ cell division protein FtsJ.	98.99
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.98
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.98
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.97
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.97
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.97
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.97
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.96
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.95
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.93
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.93
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.92
PRK14968	188	putative methyltransferase; Provisional	98.92
PHA03411	279	putative methyltransferase; Provisional	98.92
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.91
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.91
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.91
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.91
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.9
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.89
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.89
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.88
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.88
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.88
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.87
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.86
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.86
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.85
PHA03412	241	putative methyltransferase; Provisional	98.85
PLN02490	340	MPBQ/MSBQ methyltransferase	98.85
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.84
PRK08317	241	hypothetical protein; Provisional	98.84
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.84
PLN02336	475	phosphoethanolamine N-methyltransferase	98.84
PRK12335	287	tellurite resistance protein TehB; Provisional	98.82
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.81
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.8
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.8
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.79
PRK06922	677	hypothetical protein; Provisional	98.79
PTZ00146	293	fibrillarin; Provisional	98.79
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.78
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.76
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.76
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.75
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.74
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.73
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.72
KOG2899	288	consensus Predicted methyltransferase [General fun	98.71
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.7
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.69
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.69
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.69
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.68
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.68
PLN02336	475	phosphoethanolamine N-methyltransferase	98.67
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.66
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.66
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.66
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.64
TIGR03438	301	probable methyltransferase. This model represents	98.61
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.61
PRK05785	226	hypothetical protein; Provisional	98.61
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.61
KOG3010	261	consensus Methyltransferase [General function pred	98.61
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.61
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.58
KOG4300	252	consensus Predicted methyltransferase [General fun	98.57
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.56
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.55
KOG1271	227	consensus Methyltransferases [General function pre	98.55
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.53
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.52
PRK06202	232	hypothetical protein; Provisional	98.5
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.5
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.5
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.45
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.44
KOG2904	328	consensus Predicted methyltransferase [General fun	98.44
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.41
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.41
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.4
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.37
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.35
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.34
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.3
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.29
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.26
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.24
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.24
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	98.23
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.23
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.21
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.17
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.17
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.17
COG2520	341	Predicted methyltransferase [General function pred	98.16
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.12
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.09
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.09
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.09
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.06
PRK10742	250	putative methyltransferase; Provisional	98.05
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.05
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.03
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.0
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.98
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.97
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.95
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.87
KOG2940	325	consensus Predicted methyltransferase [General fun	97.83
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.8
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.8
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.77
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.77
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.77
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.75
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.75
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.7
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.68
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.67
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.67
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.63
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.59
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.58
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.52
COG4076	252	Predicted RNA methylase [General function predicti	97.51
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.48
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.45
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.45
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.45
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.37
PRK04148	134	hypothetical protein; Provisional	97.34
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.33
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.3
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.29
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.24
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.23
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.2
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.12
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.11
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.09
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.05
KOG2730	263	consensus Methylase [General function prediction o	97.02
KOG2361	264	consensus Predicted methyltransferase [General fun	96.93
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.82
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.79
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.67
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.66
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.65
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.52
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.52
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.51
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.43
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.33
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.26
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.16
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.99
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.94
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.92
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.92
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.9
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.79
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.73
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.7
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.7
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.63
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.57
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.53
COG0286	489	HsdM Type I restriction-modification system methyl	95.52
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.48
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.45
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.35
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	95.33
PF13679	141	Methyltransf_32: Methyltransferase domain	95.26
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	95.25
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.23
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.18
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.09
PRK11524	284	putative methyltransferase; Provisional	94.98
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.79
COG1568	354	Predicted methyltransferases [General function pre	94.6
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.58
PTZ00357	1072	methyltransferase; Provisional	94.55
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	94.55
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.45
KOG3115	249	consensus Methyltransferase-like protein [General	94.4
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.16
COG3897	218	Predicted methyltransferase [General function pred	94.13
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.05
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.99
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.94
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.74
PRK10637	457	cysG siroheme synthase; Provisional	93.73
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.73
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	93.57
PRK13699	227	putative methylase; Provisional	93.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.29
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.23
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.22
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.03
PHA01634	156	hypothetical protein	92.91
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	92.84
COG4121	252	Uncharacterized conserved protein [Function unknow	92.84
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	92.83
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.72
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.69
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.57
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.34
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.31
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.24
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	92.19
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.9
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	91.6
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.57
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.41
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.41
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	91.35
KOG4058	199	consensus Uncharacterized conserved protein [Funct	91.33
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	91.26
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	90.95
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	90.86
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.86
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.78
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.75
PRK06719	157	precorrin-2 dehydrogenase; Validated	90.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.57
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	90.5
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	90.44
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	90.44
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.84
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	89.66
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	89.58
PLN02494	477	adenosylhomocysteinase	89.55
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	89.47
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.25
PRK07340	304	ornithine cyclodeaminase; Validated	88.96
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	88.81
KOG2078	495	consensus tRNA modification enzyme [RNA processing	88.77
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	88.54
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	88.52
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.43
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.36
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	88.3
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.29
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.14
PRK11524	284	putative methyltransferase; Provisional	88.1
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	88.07
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	88.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	87.79
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	87.63
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.37
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	87.3
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	87.13
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.06
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	86.94
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.83
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	86.73
PF03269	177	DUF268: Caenorhabditis protein of unknown function	86.69
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	86.68
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.62
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	86.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	86.56
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	86.53
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	86.4
PRK15116	268	sulfur acceptor protein CsdL; Provisional	86.36
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	86.1
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	86.07
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	86.06
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.98
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	85.93
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	85.87
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.85
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	85.7
PTZ00117	319	malate dehydrogenase; Provisional	85.55
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	85.54
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	85.29
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	85.17
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	85.13
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.04
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.97
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	84.92
PRK09496	453	trkA potassium transporter peripheral membrane com	84.85
PF06690	252	DUF1188: Protein of unknown function (DUF1188); In	84.66
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	84.64
PTZ00082	321	L-lactate dehydrogenase; Provisional	84.59
COG2961	279	ComJ Protein involved in catabolism of external DN	84.56
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.52
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	84.39
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	84.36
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	84.35
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	84.22
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	84.21
PRK08618	325	ornithine cyclodeaminase; Validated	84.1
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	83.95
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	83.95
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	83.91
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	83.76
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	83.75
KOG1501	636	consensus Arginine N-methyltransferase [General fu	83.66
PRK07417	279	arogenate dehydrogenase; Reviewed	83.6
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	83.46
PRK06223	307	malate dehydrogenase; Reviewed	83.35
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	83.18
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	82.76
PLN02740	381	Alcohol dehydrogenase-like	82.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.62
COG4017	254	Uncharacterized protein conserved in archaea [Func	82.51
PRK06141	314	ornithine cyclodeaminase; Validated	82.24
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	82.13
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	81.9
COG1565	370	Uncharacterized conserved protein [Function unknow	81.89
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	81.75
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	81.53
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	81.38
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	81.36
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	81.34
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	81.3
PLN02256	304	arogenate dehydrogenase	81.04
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	80.92
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	80.76
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	80.7
PRK13699	227	putative methylase; Provisional	80.67
PRK06545	359	prephenate dehydrogenase; Validated	80.66
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	80.33
PRK08507	275	prephenate dehydrogenase; Validated	80.07
COG4565	224	CitB Response regulator of citrate/malate metaboli	80.05

>PLN02823 spermine synthase

Probab=100.00  E-value=7.2e-66  Score=493.59  Aligned_cols=330  Identities=73%  Similarity=1.218  Sum_probs=295.4

Q ss_pred             ceeeecCCcccccccccccccC-CccccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccc
Q 019699            3 EISCSNGISQANGADAKNVALT-GYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA   81 (337)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~   81 (337)
                      ||--.||.|........+-++. .+....|++|.+.++.++.++++++|++++|+||+|+|++++.+|++|++||..|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~   82 (336)
T PLN02823          3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA   82 (336)
T ss_pred             ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence            5667788776544333332222 223678999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE
Q 019699           82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV  161 (337)
Q Consensus        82 ~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~  161 (337)
                      +.|++.|||+|+|+|++.|++|++||+||+|+|++++++++|++..+|++||||++|+++||+||+.+.+.++|||++++
T Consensus        83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~  162 (336)
T PLN02823         83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI  162 (336)
T ss_pred             cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence            99999999999999999999999999999999999999999988899999999999999999999876666889999999


Q ss_pred             EccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH-HHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       162 ~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~-~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      ++||++||+...++||+||+|+++|...+|+.+|||.|||+ . ++++|+|||++++|.+++..+.+.+.++.+++++++
T Consensus       163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~  241 (336)
T PLN02823        163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ  241 (336)
T ss_pred             EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence            99999999887889999999999987656777899999998 8 799999999999999876545567889999999999


Q ss_pred             hcCceeEEEeeccccCCceEEEEEecCCCC-CCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCccccc
Q 019699          241 VFKYVVPYSAHIPSFADTWGWIMASDSPFT-LSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTE  319 (337)
Q Consensus       241 vF~~v~~~~~~vP~~~~~~~~~~as~~p~~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~  319 (337)
                      +||+|.+|.+.+|+|++.|+|++||+.|.. ++++.+.+|+.++...++||||+++|+++|+||+++++.|..+.+|+|+
T Consensus       242 vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~~~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~v~t~  321 (336)
T PLN02823        242 VFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSRIKERIDGELKYLDGETFSSAFALNKTVRQALANETHVYTE  321 (336)
T ss_pred             hCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHhhhhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCCceec
Confidence            999999999999999888999999998753 7778888888776556799999999999999999999999999999999


Q ss_pred             CCcccccccccccc
Q 019699          320 GSARFIYGYGSALK  333 (337)
Q Consensus       320 ~~~~~~~~~~~~~~  333 (337)
                      ++|+++.++|.|-|
T Consensus       322 ~~p~~~~~~~~~~~  335 (336)
T PLN02823        322 ENARFIHGHGTAAK  335 (336)
T ss_pred             CCCeeecCcccccC
Confidence            99999999998876

>PRK00536 speE spermidine synthase; Provisional

Probab=100.00  E-value=1.2e-62  Score=455.28  Aligned_cols=258  Identities=18%  Similarity=0.250  Sum_probs=230.2

Q ss_pred             ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEE
Q 019699           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (337)
Q Consensus        30 ~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiI  109 (337)
                      +|++|..+++.+++++++++|++++|+||+|+|+++..|||+|.|| ..|++++|||+|||||+|+||+.|++|+|||+|
T Consensus         1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi   79 (262)
T PRK00536          1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_pred             CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence            5999999999999999999999999999999999999999999999 666799999999999999999999999999999


Q ss_pred             ecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC
Q 019699          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (337)
Q Consensus       110 G~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~  189 (337)
                      |||+|+++||++||+  .+|++||||++|+++||+|||...++++|||+++++    .+.+...++||+||+|++     
T Consensus        80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~-----  148 (262)
T PRK00536         80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE-----  148 (262)
T ss_pred             cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence            999999999999996  499999999999999999999766789999999997    233333478999999964     


Q ss_pred             CCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCC
Q 019699          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPF  269 (337)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~  269 (337)
                            ++.+||+. ++++|+|||++++|+++|  +.+.+.++.+.++++++|+.+.+|.+++|+| +.|+|++||++++
T Consensus       149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~-g~wgf~~aS~~~~  218 (262)
T PRK00536        149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPLRIL-SNKGYIYASFKTH  218 (262)
T ss_pred             ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecCCCc-chhhhheecCCCC
Confidence                  34699998 899999999999999998  6688999999999999999999999999999 5799999999876


Q ss_pred             CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699          270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN  312 (337)
Q Consensus       270 ~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~  312 (337)
                      +.. +.+.+|+..  ...|||||+++|+++|+||++++++|..
T Consensus       219 p~~-~~~~~~~~~--~~~lryy~~~~h~a~F~lP~~v~~~l~~  258 (262)
T PRK00536        219 PLK-DLMLQKIEA--LKSVRYYNEDIHRAAFALPKNLQEVFKD  258 (262)
T ss_pred             Ccc-chhhhhhcc--cCCceeeCHHHHHHHhcCcHHHHHHHHH
Confidence            542 223344332  2459999999999999999999999864

>PLN02366 spermidine synthase

Probab=100.00  E-value=1.6e-59  Score=445.59  Aligned_cols=283  Identities=29%  Similarity=0.551  Sum_probs=248.4

Q ss_pred             ccccceEEee--eccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCC
Q 019699           26 YRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP  103 (337)
Q Consensus        26 ~~~~~w~~e~--~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p  103 (337)
                      +..+.|++|.  .+++.+.+++++++|++++|+||+|.|++++.+|++|+|||.+|++++|++.|||||+|+|++.|++|
T Consensus        13 ~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~p   92 (308)
T PLN02366         13 TVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP   92 (308)
T ss_pred             hhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCC
Confidence            4568999998  45778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEe
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD  182 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D  182 (337)
                      ++||+||||+|++++++++|+++.+|++||||++|+++||+||+.....++|||++++++||++|+++. +++||+||+|
T Consensus        93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D  172 (308)
T PLN02366         93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD  172 (308)
T ss_pred             CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence            999999999999999999998889999999999999999999985444578999999999999999876 5789999999


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc-CceeEEEeeccccC-CceE
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSFA-DTWG  260 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF-~~v~~~~~~vP~~~-~~~~  260 (337)
                      +++|.  +|+..|++.+||+. ++++|+|||++++|.+++  |.+.+.++.+.++++++| +.+..|.+.+|+|+ +.|+
T Consensus       173 ~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~  247 (308)
T PLN02366        173 SSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIG  247 (308)
T ss_pred             CCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceE
Confidence            99987  67789999999999 899999999999999887  778889999999999999 57888889999995 6799


Q ss_pred             EEEEecC-CCC-C-CH-HHHHH-HHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCC
Q 019699          261 WIMASDS-PFT-L-SA-EELDM-KVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE  313 (337)
Q Consensus       261 ~~~as~~-p~~-~-~~-~~l~~-r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~  313 (337)
                      |++||++ +.. + .+ +.... +.+.+...+|||||+++|+++|+||+|++++|+..
T Consensus       248 f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~~  305 (308)
T PLN02366        248 FVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESL  305 (308)
T ss_pred             EEEEECCCccccccccccccchhhhhhcccCCCeEECHHHHHHHhcChHHHHHHHHhc
Confidence            9999997 211 0 00 11111 22223235799999999999999999999998753

>PRK00811 spermidine synthase; Provisional

Probab=100.00  E-value=3.9e-59  Score=439.63  Aligned_cols=278  Identities=37%  Similarity=0.695  Sum_probs=251.0

Q ss_pred             ccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEE
Q 019699           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (337)
Q Consensus        28 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VL  107 (337)
                      ..+||+|..+++.++.++++++|++++|+||+|.|++++++|++|++||..|+++++++.|||+|+|+|++.|++|++||
T Consensus         2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL   81 (283)
T PRK00811          2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL   81 (283)
T ss_pred             CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       108 iIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      +||||+|+++++++++++..+|++||||++++++|+++|+. ..+.+++||++++++||++|++...++||+||+|+++|
T Consensus        82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp  161 (283)
T PRK00811         82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP  161 (283)
T ss_pred             EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence            99999999999999998788999999999999999999974 33445799999999999999988778999999999998


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEEe
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMAS  265 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~as  265 (337)
                      .  +|+..|++.+||+. ++++|+|||++++|.++|  +.+.+.++.+.++++++|++|.+|...+|+| ++.|+|++||
T Consensus       162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as  236 (283)
T PRK00811        162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFAS  236 (283)
T ss_pred             C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEee
Confidence            7  67679999999999 899999999999998877  5567889999999999999999999999999 5679999999


Q ss_pred             cCCC--CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          266 DSPF--TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       266 ~~p~--~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      +.+.  ..+.+.+.+|+.++. .++||||+++|+++|+||+++|++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~yy~~~~h~~~f~lp~~~~~~~~  283 (283)
T PRK00811        237 KNDDLKFLPLDVIEARFAERG-IKTRYYNPELHKAAFALPQFVKDALK  283 (283)
T ss_pred             cCcccccCccccchhhHhhcc-CCCeEECHHHHHHHhcCcHHHHHhhC
Confidence            9532  233455666776542 36999999999999999999999874

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-58  Score=430.33  Aligned_cols=277  Identities=38%  Similarity=0.713  Sum_probs=251.3

Q ss_pred             ccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEE
Q 019699           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (337)
Q Consensus        28 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VL  107 (337)
                      .++|+.|..+++.+..+++++++++++|.||+|.++++..+|++|.+||..|+++++++.||||++|+|++.|++|++||
T Consensus         2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL   81 (282)
T COG0421           2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL   81 (282)
T ss_pred             CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence            57899999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCC
Q 019699          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (337)
Q Consensus       108 iIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~  187 (337)
                      +||||+|+++|++++|.+++++++||||++|+++||+||+.......|||++++++||++|++++.++||+||+|++||.
T Consensus        82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~  161 (282)
T COG0421          82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV  161 (282)
T ss_pred             EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence            99999999999999999999999999999999999999997654445999999999999999998889999999999995


Q ss_pred             CCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEe-
Q 019699          188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMAS-  265 (337)
Q Consensus       188 ~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as-  265 (337)
                        +|+..|||.+||+. |+++|+++|++++|+++|  +.+.+.+..+.+.++.+|+.+.+|...+|+|+ +.|+|+++| 
T Consensus       162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~  236 (282)
T COG0421         162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF  236 (282)
T ss_pred             --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence              89999999999999 899999999999999887  67778899999999999999999999999996 459999999 


Q ss_pred             cCCCCCCH-HHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          266 DSPFTLSA-EELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       266 ~~p~~~~~-~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      +.++++.. +....|...  ...++|||+++|.++|+||+++++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~--~~~~~yy~~~~h~~~f~lp~~~~~~~~  281 (282)
T COG0421         237 NKAHPLKSLDALQARALA--LLTLKYYNEDIHDAAFALPKNLQDELK  281 (282)
T ss_pred             CCCCcccchhHHHHHHhh--hhhhccCcHHHhhhhhcCCcchhhhcc
Confidence            55555432 222222221  246799999999999999999998875

>TIGR00417 speE spermidine synthase

Probab=100.00  E-value=1.4e-53  Score=399.49  Aligned_cols=268  Identities=35%  Similarity=0.694  Sum_probs=240.9

Q ss_pred             eEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEe
Q 019699           31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG  110 (337)
Q Consensus        31 w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG  110 (337)
                      |++|..+++.++.++++++|++++|+||+|.|++++++|++|+|||..|+++.+++.|||+|+|++++.|++|++||+||
T Consensus         1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG   80 (270)
T TIGR00417         1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG   80 (270)
T ss_pred             CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCC
Q 019699          111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG  190 (337)
Q Consensus       111 ~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~  190 (337)
                      +|+|+++++++++.+..++++||+|+++++.|+++|+...+.++++|++++++|+++|+++..++||+||+|.++|.  +
T Consensus        81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~  158 (270)
T TIGR00417        81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G  158 (270)
T ss_pred             CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence            99999999999987778999999999999999999975445577899999999999999887889999999999886  5


Q ss_pred             CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEec-CC
Q 019699          191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASD-SP  268 (337)
Q Consensus       191 p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as~-~p  268 (337)
                      +...|++.+||+. ++++|+|||+++++.++|  +...+.++.+.++++++|+++.+|.+.+|+|+ +.|+|++||+ ..
T Consensus       159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~~~  235 (270)
T TIGR00417       159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKNKY  235 (270)
T ss_pred             cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECCCC
Confidence            6678999999999 899999999999998776  56788899999999999999999999999994 5799999999 33


Q ss_pred             CCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHH
Q 019699          269 FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKA  305 (337)
Q Consensus       269 ~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~  305 (337)
                      .++..+  .+|++++...++||||+++|+++|+||+|
T Consensus       236 ~~~~~~--~~~~~~~~~~~~~~y~~~~h~~~f~lp~~  270 (270)
T TIGR00417       236 DPLEVE--DRRISEFEDGKTKYYNPDIHKAAFVLPKW  270 (270)
T ss_pred             CCCCcc--hhhhhhcccCCCeEECHHHHHHhcCCCCC
Confidence            343322  23455433346999999999999999975

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=100.00  E-value=4.3e-53  Score=390.72  Aligned_cols=234  Identities=46%  Similarity=0.853  Sum_probs=217.0

Q ss_pred             ceEEeeec---cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        30 ~w~~e~~~---~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      +||+|+++   ++.+.+|+++++|++++|+||+|+|++++.+|++|+|||..|+++++++.|||+|+|+|++.|++|++|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V   80 (246)
T PF01564_consen    1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV   80 (246)
T ss_dssp             TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred             CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence            69999998   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC-ceeEEEEeCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD  185 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~d  185 (337)
                      |+||+|+|++++++++|++.++|++|||||.|+++|++||+.....++|||++++++||+.||++..+ +||+||+|+++
T Consensus        81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d  160 (246)
T PF01564_consen   81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD  160 (246)
T ss_dssp             EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred             EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence            99999999999999999888999999999999999999998655557899999999999999999887 99999999999


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC-ceEEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMA  264 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~-~~~~~~a  264 (337)
                      |.  +++..||+.|||+. ++++|+|||++++|.++|  ..+...++.+.++++++|+.|.+|.+++|+|++ .|+|++|
T Consensus       161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~  235 (246)
T PF01564_consen  161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASA  235 (246)
T ss_dssp             TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEE
T ss_pred             CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEE
Confidence            87  56667999999998 899999999999999776  567889999999999999999999999999976 4889999


Q ss_pred             ecCC
Q 019699          265 SDSP  268 (337)
Q Consensus       265 s~~p  268 (337)
                      |+.+
T Consensus       236 s~~~  239 (246)
T PF01564_consen  236 SKDI  239 (246)
T ss_dssp             ESST
T ss_pred             eCCC
Confidence            9986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK03612 spermidine synthase; Provisional

Probab=100.00  E-value=1.1e-49  Score=403.61  Aligned_cols=289  Identities=30%  Similarity=0.530  Sum_probs=249.7

Q ss_pred             ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCC-Cc--eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        30 ~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~-~G--~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      .|..+.........++.++++++++|+||+|.|++++. +|  +.|++||..|+++.|++.|||+++|++++.|++|++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rV  301 (521)
T PRK03612        222 FVLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRV  301 (521)
T ss_pred             HHcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeE
Confidence            35656555555667788999999999999999999876 36  8999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhh--hh-hccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY--LV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~--f~-~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      |+||+|+|.+++++++|+++++|++||||+++++.||++  ++ .+.+.++|||++++++|+++|++..+++||+|++|.
T Consensus       302 L~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~  381 (521)
T PRK03612        302 LVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDL  381 (521)
T ss_pred             EEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeC
Confidence            999999999999999987668999999999999999994  43 344567899999999999999988778999999999


Q ss_pred             CCCCCCCC-CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEE
Q 019699          184 ADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGW  261 (337)
Q Consensus       184 ~dp~~~~p-~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~  261 (337)
                      ++|.  .| ..+++++|||+. ++++|+|||++++|.++|  +.+.+.+.++.++++++ | .+.+|...+|+| +.|+|
T Consensus       382 ~~~~--~~~~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~-g~w~f  454 (521)
T PRK03612        382 PDPS--NPALGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF-GEWGF  454 (521)
T ss_pred             CCCC--CcchhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc-chhHH
Confidence            9876  33 258999999999 899999999999999877  56788899999999999 8 899999999999 48999


Q ss_pred             EEEecCCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCcccccCCccccccccccccc
Q 019699          262 IMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQ  334 (337)
Q Consensus       262 ~~as~~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~~~~~~~~~~~~~~~~  334 (337)
                      ++|||.+.+...+  .   . ....++||||+++|+++|+||++++   .++.+|+|+++|.++.++-++.++
T Consensus       455 ~~as~~~~~~~~~--~---~-~~~~~~~~y~~~~h~~~f~lp~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  518 (521)
T PRK03612        455 VLAGAGARPPLAV--P---T-ELPVPLRFLDPALLAAAFVFPKDMR---RREVEPNTLNNPVLVRYYREEWRE  518 (521)
T ss_pred             HeeeCCCCccccc--c---h-hcccCCcccCHHHHHHHhCCChhhh---hcCcCccccCCcceeHHHHHHHHH
Confidence            9999986543211  1   1 1245799999999999999999999   478999999999999987665443

>PRK01581 speE spermidine synthase; Validated

Probab=100.00  E-value=2.4e-47  Score=364.78  Aligned_cols=259  Identities=33%  Similarity=0.525  Sum_probs=220.5

Q ss_pred             eeecCCc-----ccccccccccccCCcccc---ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcC
Q 019699            5 SCSNGIS-----QANGADAKNVALTGYRKS---CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG   76 (337)
Q Consensus         5 ~~~~~~~-----~~~~~~~~~~~~~~~~~~---~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG   76 (337)
                      +-+.||.     |-|...++||.+-+-..+   .|-  +.+ -..+-..+.++|++++|+||+|.|+++..+  .|+|||
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG  124 (374)
T PRK01581         50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EIS-LKEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK  124 (374)
T ss_pred             eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHH-HHHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence            4456664     456667788876544333   232  111 112223567999999999999999999976  699999


Q ss_pred             ccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh---hccCCC
Q 019699           77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF  153 (337)
Q Consensus        77 ~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~---~~~~~~  153 (337)
                      .+|++++||++|||+|+|+|++.|++|++||+||||+|.+++++++++++.+|++||||++|+++|++++.   .+++.+
T Consensus       125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~  204 (374)
T PRK01581        125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF  204 (374)
T ss_pred             eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence            99999999999999999999999999999999999999999999999888999999999999999998543   345567


Q ss_pred             CCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHH
Q 019699          154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (337)
Q Consensus       154 ~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~  233 (337)
                      ++||++++++||++|++...++||+||+|+++|.. .+...||+.+||+. ++++|+|||++++|.++|  +..+..+..
T Consensus       205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~  280 (374)
T PRK01581        205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS  280 (374)
T ss_pred             CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence            89999999999999998888899999999998863 23578999999999 899999999999998877  556777888


Q ss_pred             HHHHHhhhcCceeEEEeeccccCCceEEEEEecCCCCCC
Q 019699          234 IYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLS  272 (337)
Q Consensus       234 i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~~~~  272 (337)
                      +.++++++|+.+.+|.+.+|+|++.|+|++||+.|..++
T Consensus       281 i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~~~  319 (374)
T PRK01581        281 IGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLD  319 (374)
T ss_pred             HHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccccc
Confidence            999999999999999999999988899999999886654

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.2e-48  Score=352.86  Aligned_cols=282  Identities=28%  Similarity=0.518  Sum_probs=251.4

Q ss_pred             ccCCccccceEEeeec-----cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHH
Q 019699           22 ALTGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA   96 (337)
Q Consensus        22 ~~~~~~~~~w~~e~~~-----~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~   96 (337)
                      +.-+....+||.|...     |+.+++++++++|+.++|.||++.|+++..+|++|.+||..|.+++|++.|+||++|+|
T Consensus        36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~  115 (337)
T KOG1562|consen   36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA  115 (337)
T ss_pred             cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence            4456677899998754     38899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCc
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES  175 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~  175 (337)
                      ++.|++|++||+||+|+|+..|+..+|..++.++.+|||..|++..++|++.....+++|++.+++|||..|++.. .+.
T Consensus       116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~  195 (337)
T KOG1562|consen  116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP  195 (337)
T ss_pred             cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999999997667799999999999999999987 689


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      ||+||+|+.+|.  +|+..+|.+.||+. +++.|++||++++|..+-  |.+.+..++..+..+.+|+.+..-.+.+|||
T Consensus       196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTy  270 (337)
T KOG1562|consen  196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTY  270 (337)
T ss_pred             ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCC
Confidence            999999999998  89999999999998 899999999999998754  8899999999999999999876656789999


Q ss_pred             C-CceEEEEEe-cCCC--------CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699          256 A-DTWGWIMAS-DSPF--------TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN  312 (337)
Q Consensus       256 ~-~~~~~~~as-~~p~--------~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~  312 (337)
                      + +..+|++|| ++|.        +++..+. .++.   ..+|+|||.++|+++|+||.|+++.+..
T Consensus       271 psg~igf~l~s~~~~~~~~~~p~n~i~~~e~-~~l~---~~~L~yyn~e~h~aaf~lPsf~~k~~~~  333 (337)
T KOG1562|consen  271 PSGRIGFMLCSKLKPDGKYKTPGNPITCKEQ-LSLY---EEQLLYYNVEFHSAAFVLPSFAEKWLFY  333 (337)
T ss_pred             ccceEEEEEecccCCCCCccCCCCccCHHHH-Hhhh---hhhhccCCchhceeeeechHHHHHHHHH
Confidence            5 678999999 3431        2322221 2222   2478999999999999999999998753

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=100.00  E-value=2e-45  Score=344.25  Aligned_cols=272  Identities=29%  Similarity=0.513  Sum_probs=239.7

Q ss_pred             chhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH
Q 019699           39 NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR  118 (337)
Q Consensus        39 ~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~  118 (337)
                      ..++.+..++++|..+|+||+|.|.+.++ ...|++||..|.+++||+.|||.++|+++...+..++||++|||+|-.+|
T Consensus       227 ~~eqqlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlR  305 (508)
T COG4262         227 TSEQQLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALR  305 (508)
T ss_pred             hHHHHhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHH
Confidence            34456667899999999999999999876 37899999999999999999999999999888899999999999999999


Q ss_pred             HHHhcCCCcEEEEEECChHHHHHHHhhh---hhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCC
Q 019699          119 EILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL  195 (337)
Q Consensus       119 ~ll~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L  195 (337)
                      |++|++..++|+.||+||+|++.+++..   ..+++++.|||++++++|+.+|++...+.||+||+|.+||.... ...+
T Consensus       306 ellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~rl  384 (508)
T COG4262         306 ELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGRL  384 (508)
T ss_pred             HHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhhh
Confidence            9999988999999999999999999654   35778899999999999999999999999999999999998432 3589


Q ss_pred             chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCCCCCHHH
Q 019699          196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEE  275 (337)
Q Consensus       196 ~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~~~~~~~  275 (337)
                      |+.|||.. ++++|+++|++++|.++|  +..++.+.++.+|+++.--.+.||.+++|+|++ |+|++|++.+..+.+  
T Consensus       385 YS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fep--  458 (508)
T COG4262         385 YSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFEP--  458 (508)
T ss_pred             hhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCCC--
Confidence            99999998 899999999999999998  678999999999999998889999999999976 999999998754421  


Q ss_pred             HHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc-CCCcccccCCcccccc
Q 019699          276 LDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD-NETQVYTEGSARFIYG  327 (337)
Q Consensus       276 l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~-~~~~~~t~~~~~~~~~  327 (337)
                      ..     ....+++|.|.++..++|++.+.    .. .+..++|.|||..+.+
T Consensus       459 ~~-----e~~~~t~FLd~e~~~a~~~fg~d----~prp~vepntL~~p~lV~y  502 (508)
T COG4262         459 PT-----EYRPPTRFLDAEVLHAAFVFGPD----MPRPQVEPNTLDNPSLVEY  502 (508)
T ss_pred             Cc-----ccCcccchhhHHHHHHHHhcCCC----CCCCCCCccccCCHHHHHH
Confidence            00     12468999999999999988765    23 3678999999988764

>PRK04457 spermidine synthase; Provisional

Probab=99.97  E-value=1.6e-28  Score=229.15  Aligned_cols=215  Identities=21%  Similarity=0.333  Sum_probs=172.0

Q ss_pred             EEeecCCCeEEEEEeCCCceEEEEcC-cccccc------CChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhc
Q 019699           51 HTGETRYQDIALLDTKPFGKALVIDG-KLQSAE------VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH  123 (337)
Q Consensus        51 ~~~~s~~q~I~V~~~~~~G~~L~lDG-~~q~~~------~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~  123 (337)
                      ...++.|+.|.|+|... .|+|.+|+ ..|+..      ...+.|+++|+ ..+..+++|++||+||+|+|.++++++++
T Consensus        10 ~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~-~~l~~~~~~~~vL~IG~G~G~l~~~l~~~   87 (262)
T PRK04457         10 RPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMM-GFLLFNPRPQHILQIGLGGGSLAKFIYTY   87 (262)
T ss_pred             ccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHH-HHHhcCCCCCEEEEECCCHhHHHHHHHHh
Confidence            34567899999999987 49999998 477753      23468999886 35556788999999999999999999998


Q ss_pred             CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          124 KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       124 ~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      .+..+|++||+||+++++|+++|..+.   .++|++++++|+++|++...++||+|++|.++..  +++..+++.+||+.
T Consensus        88 ~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~  162 (262)
T PRK04457         88 LPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD  162 (262)
T ss_pred             CCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH
Confidence            888899999999999999999987542   3689999999999999887789999999998654  44468899999999


Q ss_pred             HhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEec-CCCCCCHHHHHHHHH
Q 019699          204 VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD-SPFTLSAEELDMKVK  281 (337)
Q Consensus       204 ~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~-~p~~~~~~~l~~r~~  281 (337)
                       ++++|+|||++++|.     +...+.+..++++++++|+++.. .  +|.....|.+++|++ .|...+...+.+|.+
T Consensus       163 -~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~~~-~--~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~  232 (262)
T PRK04457        163 -CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGRVL-E--LPAESHGNVAVFAFKSAPKELRWDKLRKRAK  232 (262)
T ss_pred             -HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCcEE-E--EecCCCccEEEEEECCCCCCcCHHHHHHHHH
Confidence             899999999999986     23344567888999999996432 2  233344577888987 464555577777755

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.70  E-value=2.6e-16  Score=141.07  Aligned_cols=170  Identities=22%  Similarity=0.289  Sum_probs=140.9

Q ss_pred             eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc
Q 019699           70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN  149 (337)
Q Consensus        70 ~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~  149 (337)
                      -++.+||..|.......++..++..+.+.-..+..+||+.++|-|.++.+.++. +..+|..||-||.|+++|+-+ |+.
T Consensus       102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS  179 (287)
T COG2521         102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS  179 (287)
T ss_pred             CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence            578999999987777778899988877766667899999999999999999996 456999999999999999876 443


Q ss_pred             cCCCCCCCeEEEEccHHHHHhhcC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCc-CCC
Q 019699          150 KEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH  227 (337)
Q Consensus       150 ~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~-~~~  227 (337)
                      .+ +.+++++++.+|+.+++++.+ ++||+||.|++--.   .+.+||+.+||++ +.+.|++||-+.-..+.|+. ...
T Consensus       180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG  254 (287)
T COG2521         180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG  254 (287)
T ss_pred             cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence            33 345689999999999999865 66999999997432   2358999999999 89999999999888887763 334


Q ss_pred             hhHHHHHHHHHhhh-cCcee
Q 019699          228 TEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       228 ~~~~~~i~~~l~~v-F~~v~  246 (337)
                      .+..+.+.+.|+++ |..|.
T Consensus       255 ~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         255 LDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             CChhHHHHHHHHhcCceeee
Confidence            56778899999998 65443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.54  E-value=1.9e-14  Score=115.96  Aligned_cols=109  Identities=20%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ..+||+||||+|.++.+++++.+..+|++||+||++++.|++.+....   ..+|++++.+|+ .+.....++||+|+++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            578999999999999999996567899999999999999999984322   358999999999 5555556789999998


Q ss_pred             C-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      . ....  .+ ..-...++++. ++++|+|||+++++.
T Consensus        78 ~~~~~~--~~-~~~~~~~~l~~-~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHF--LL-PLDERRRVLER-IRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGG--CC-HHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCcccc--cc-chhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            7 3211  11 01123568898 899999999999863

...

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=99.47  E-value=8e-14  Score=137.12  Aligned_cols=170  Identities=18%  Similarity=0.219  Sum_probs=136.6

Q ss_pred             hHHHHHHh-HHHhc------CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE
Q 019699           87 IYHESLVH-PALLH------HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE  159 (337)
Q Consensus        87 ~Y~e~l~~-~~l~~------~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~  159 (337)
                      .||.+|.. .+|..      +....++|++|.|+|.++..+..+.+..++++|||||.+++.|++||...+    +.|.+
T Consensus       273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~  348 (482)
T KOG2352|consen  273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK  348 (482)
T ss_pred             chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence            58887753 23332      234678999999999999999988888999999999999999999998764    34899


Q ss_pred             EEEccHHHHHhhc------CCceeEEEEeCCCCCC---CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhH
Q 019699          160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV  230 (337)
Q Consensus       160 v~~~D~~~~l~~~------~~~yDvIi~D~~dp~~---~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~  230 (337)
                      +++.||.+|++++      ...||+++.|...+..   ..|+..+...+|++. ++..|.|.|++++|..++    +...
T Consensus       349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r----~~~~  423 (482)
T KOG2352|consen  349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTR----NSSF  423 (482)
T ss_pred             hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecC----Ccch
Confidence            9999999999875      3579999999864332   235567888999999 899999999999997543    5566


Q ss_pred             HHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCC
Q 019699          231 FSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPF  269 (337)
Q Consensus       231 ~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~  269 (337)
                      ..++...|+++||....+...    ++.|-+++|...|.
T Consensus       424 ~~~~~~~l~~vf~~l~~~~~~----~~~N~il~~~~~~~  458 (482)
T KOG2352|consen  424 KDEVLMNLAKVFPQLYHHQLE----EDVNEILIGQMPPK  458 (482)
T ss_pred             hHHHHHhhhhhhHHHhhhhcc----CCCceeEEeecChh
Confidence            778899999999997655432    46788899987764

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.45  E-value=6.1e-13  Score=108.10  Aligned_cols=110  Identities=26%  Similarity=0.369  Sum_probs=85.3

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEEEe
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD  182 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi~D  182 (337)
                      .+||++|+|+|.++..++++. ..+++++|+||..++++++.++...   -+++++++.+|..++.+. ..++||+|+.|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            589999999999999999986 6899999999999999999987643   246899999999998743 35889999999


Q ss_pred             CCCCCCC-C-CCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          183 LADPIEG-G-PCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       183 ~~dp~~~-~-p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++..... . ....-...+|++. +.++|+|||++++-
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFI  114 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEE
Confidence            9743210 0 1111234689998 89999999998875

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.38  E-value=1.4e-12  Score=113.99  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=93.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ..++||++|||+|.++..++++.+..+|+++|+++..++.+++++..+.  ++  .++++..|..+.+.  .++||+|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~--~~--~v~~~~~d~~~~~~--~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG--LE--NVEVVQSDLFEALP--DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT--CT--TEEEEESSTTTTCC--TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--cc--cccccccccccccc--ccceeEEEE
Confidence            6789999999999999999998877789999999999999999988653  22  29999999877665  578999999


Q ss_pred             eCCCCCCCCCC-cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       182 D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ++|-..  +.. ......+|++. ++++|+|||.+.+-....   ..   .+   +.+++.|..+...
T Consensus       105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~---~~---~~l~~~f~~~~~~  160 (170)
T PF05175_consen  105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LG---YE---RLLKELFGDVEVV  160 (170)
T ss_dssp             ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SC---HH---HHHHHHHS--EEE
T ss_pred             ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CC---hH---HHHHHhcCCEEEE
Confidence            987332  221 11234788998 799999999875433211   11   11   2378888876653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.38  E-value=2.6e-11  Score=111.45  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=106.9

Q ss_pred             HHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh
Q 019699           91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (337)
Q Consensus        91 ~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~  170 (337)
                      .+........+..++|||||+|.|.++..++++.+..+|++|||++++.+.|++....+.   -.+|++++.+|.-+|.+
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~  109 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLK  109 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhh
Confidence            333334444455899999999999999999998666899999999999999999987653   25799999999999987


Q ss_pred             hcC-CceeEEEEeCCCCC-CCC--CC---------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHH
Q 019699          171 SRK-ESYDVIIGDLADPI-EGG--PC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT  237 (337)
Q Consensus       171 ~~~-~~yDvIi~D~~dp~-~~~--p~---------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~  237 (337)
                      ... .+||+|+++++.-. ...  +.         ..+.-.++.+. ++++|+|+|.+++-       ..++.+.++...
T Consensus       110 ~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~  181 (248)
T COG4123         110 ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIEL  181 (248)
T ss_pred             cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHH
Confidence            755 45999999997211 011  10         02333678887 89999999998864       245677788899


Q ss_pred             Hhhh
Q 019699          238 LRQV  241 (337)
Q Consensus       238 l~~v  241 (337)
                      +++.
T Consensus       182 l~~~  185 (248)
T COG4123         182 LKSY  185 (248)
T ss_pred             HHhc
Confidence            9984

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.37  E-value=8.6e-12  Score=112.87  Aligned_cols=106  Identities=25%  Similarity=0.340  Sum_probs=89.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhh-cCCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~-~~~~y  176 (337)
                      ...+++||+||.+.|..+.+++..-+ ..+++.+|+|++.++.|+++|....   -+++++++. +|+.+.+.+ ..+.|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~f  133 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSF  133 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCc
Confidence            35899999999999999999988644 7799999999999999999997543   256799999 699999986 56899


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||+|+.-+.         ..+||+. +-++|+|||++++.
T Consensus       134 DliFIDadK~~---------yp~~le~-~~~lLr~GGliv~D  165 (219)
T COG4122         134 DLVFIDADKAD---------YPEYLER-ALPLLRPGGLIVAD  165 (219)
T ss_pred             cEEEEeCChhh---------CHHHHHH-HHHHhCCCcEEEEe
Confidence            99999985322         2589998 78999999999874

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.37  E-value=2.4e-11  Score=108.02  Aligned_cols=157  Identities=15%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             hHHHHHHhHHHh--cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           87 IYHESLVHPALL--HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        87 ~Y~e~l~~~~l~--~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      .+++.++....+  ..+++.+||+||||+|..+..+++..+..+|++||+++.+++.|++......  +  ++++++.+|
T Consensus        28 ~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l--~~i~~~~~d  103 (187)
T PRK00107         28 LWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--L--KNVTVVHGR  103 (187)
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--C--CCEEEEecc
Confidence            455555432222  1245789999999999999998876667899999999999999999876542  2  349999999


Q ss_pred             HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCc
Q 019699          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY  244 (337)
Q Consensus       165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~  244 (337)
                      +.++-.  .++||+|+++...    .      -.+|++. +.+.|+|||.+++..+..    ....+.++...+.  -.-
T Consensus       104 ~~~~~~--~~~fDlV~~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~~--~~~  164 (187)
T PRK00107        104 AEEFGQ--EEKFDVVTSRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKALG--GKV  164 (187)
T ss_pred             HhhCCC--CCCccEEEEcccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhcC--ceE
Confidence            987533  5789999997531    1      1468887 799999999998875421    2222332222221  111


Q ss_pred             eeEEEeeccccCCceEEEEEec
Q 019699          245 VVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       245 v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      ...|...+|...+.--|++-.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~  186 (187)
T PRK00107        165 EEVIELTLPGLDGERHLVIIRK  186 (187)
T ss_pred             eeeEEEecCCCCCcEEEEEEec
Confidence            2334556777755555555544

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.36  E-value=5.5e-12  Score=113.63  Aligned_cols=105  Identities=22%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      .+|++||+||++.|..+..+++. ++..+|+.+|+|++..+.|+++|....  + +.|++++.+|+.+++.+.     .+
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~-~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--L-DDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--G-GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--C-CCcEEEEEeccHhhHHHHHhccCCC
Confidence            58899999999999999999975 456899999999999999999997532  2 469999999999988752     25


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||+||+|+.-.        - -.++|.. +.++|++||++++.
T Consensus       121 ~fD~VFiDa~K~--------~-y~~y~~~-~~~ll~~ggvii~D  154 (205)
T PF01596_consen  121 QFDFVFIDADKR--------N-YLEYFEK-ALPLLRPGGVIIAD  154 (205)
T ss_dssp             SEEEEEEESTGG--------G-HHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ceeEEEEccccc--------c-hhhHHHH-HhhhccCCeEEEEc
Confidence            799999998521        1 2468887 67899999999885

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.34  E-value=3.4e-11  Score=108.25  Aligned_cols=129  Identities=17%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDvI  179 (337)
                      +..+||+||||+|..+..+++..+..+|++||+++.+++.|++.+....    -++++++.+|+.+.+..  .+++||+|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V  115 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI  115 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence            5689999999999999999887666789999999999999999875432    26799999999444442  35789999


Q ss_pred             EEeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      ++..++|+...+.  ..+....|++. +.++|+|||++++...      ....+..+.+.+++.
T Consensus       116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~  172 (202)
T PRK00121        116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE  172 (202)
T ss_pred             EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence            9987766521111  11234789998 8999999999988642      345566666666653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.34  E-value=3e-11  Score=107.77  Aligned_cols=130  Identities=13%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDv  178 (337)
                      ....++|+||||+|.++..+++..+..++++||+++++++.|++......    -++++++.+|+.+++...  .+.+|.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence            34568999999999999999987777899999999999999998765431    248999999998876442  358999


Q ss_pred             EEEeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          179 IIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       179 Ii~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      |+++.++|+.....  ..+...+|++. +.+.|+|||.+.+.+.      ....+..+...+.+.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN  148 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence            99999988732110  23555789998 8999999999988753      334455555565554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.33  E-value=2.9e-11  Score=111.22  Aligned_cols=104  Identities=21%  Similarity=0.269  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      ..+++||+||+|+|..+..+++. ++..+|+++|+|++.++.|++++....  + +.+++++.+|+.+.+.+.     .+
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l-~~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--V-DHKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHhCCCCC
Confidence            56899999999999988888775 456799999999999999999987543  2 368999999999988652     36


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +||+|++|...+.        | .++|+. +.+.|+|||++++
T Consensus       144 ~fD~VfiDa~k~~--------y-~~~~~~-~~~ll~~GG~ii~  176 (234)
T PLN02781        144 EFDFAFVDADKPN--------Y-VHFHEQ-LLKLVKVGGIIAF  176 (234)
T ss_pred             CCCEEEECCCHHH--------H-HHHHHH-HHHhcCCCeEEEE
Confidence            8999999975321        1 267887 7899999999886

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.30  E-value=1.9e-10  Score=113.17  Aligned_cols=191  Identities=16%  Similarity=0.190  Sum_probs=119.2

Q ss_pred             cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEEC
Q 019699           55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI  134 (337)
Q Consensus        55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEi  134 (337)
                      -|.|+|.=.... +|.-+.++-......++    +|.++...+...++..+|||||||+|.++..+++..+..+|+++|+
T Consensus       209 ePlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDi  283 (423)
T PRK14966        209 EPVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDI  283 (423)
T ss_pred             CCceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEEC
Confidence            467777665443 47777777655554444    3444332222223456999999999999999887766789999999


Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCCC----------CCCcCCc----hHH
Q 019699          135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKLY----TKS  199 (337)
Q Consensus       135 d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~~----------~p~~~L~----t~e  199 (337)
                      |+++++.|+++....     ..+++++.+|..+......++||+|++|++. +...          .|...|+    ..+
T Consensus       284 S~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~  358 (423)
T PRK14966        284 SPPALETARKNAADL-----GARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLS  358 (423)
T ss_pred             CHHHHHHHHHHHHHc-----CCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHH
Confidence            999999999987643     2379999999865422123579999999973 1100          1111122    123


Q ss_pred             HHHHH---hccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEec
Q 019699          200 FYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       200 f~~~~---~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      ||+.+   +.++|+|||.+++..+.    .+.+   .+.+.+++. |..+..+    ..+.+...++++.+
T Consensus       359 ~yr~Ii~~a~~~LkpgG~lilEiG~----~Q~e---~V~~ll~~~Gf~~v~v~----kDl~G~dR~v~~~~  418 (423)
T PRK14966        359 CIRTLAQGAPDRLAEGGFLLLEHGF----DQGA---AVRGVLAENGFSGVETL----PDLAGLDRVTLGKY  418 (423)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECc----cHHH---HHHHHHHHCCCcEEEEE----EcCCCCcEEEEEEE
Confidence            44441   46899999999887642    2333   334444432 5544332    33444455666654

>PLN02476 O-methyltransferase

Probab=99.30  E-value=7.4e-11  Score=110.67  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----C
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----K  173 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~  173 (337)
                      ...+++||+||+|+|..+.++++. ++..+|+.+|+|++..+.|+++|....  + .++++++.+|+.++|++.     .
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l-~~~I~li~GdA~e~L~~l~~~~~~  192 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--V-SHKVNVKHGLAAESLKSMIQNGEG  192 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhcccC
Confidence            356899999999999999998874 345689999999999999999997542  2 369999999999998653     3


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++||+||+|+..+.         -.++|+. +.++|+|||++++.
T Consensus       193 ~~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D  227 (278)
T PLN02476        193 SSYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence            58999999985321         2478887 78999999999875

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.29  E-value=6e-11  Score=104.94  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+++||+||||+|.++..++...+..+|++||+++++++.+++......    -++++++.+|+.++.  ..++||+|++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence            4789999999999999988776666899999999999999998765432    246999999998852  3478999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +...    .      -.++++. +.+.|+|||++++..+
T Consensus       116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKG  143 (181)
T ss_pred             hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcC
Confidence            8621    1      1367787 7899999999998764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.27  E-value=4.5e-11  Score=97.45  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=84.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||+|.|..+.+++++.+..+|+++|+++.+++.+++++....    -++++++.+|+...+....++||+|+
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~   93 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF   93 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence            44579999999999999999987666899999999999999999876432    35789999998765544456899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++....       .  ..++++. +.+.|+|||.++++.
T Consensus        94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA  122 (124)
T ss_pred             ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence            975311       1  2478888 899999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.27  E-value=3.3e-10  Score=111.74  Aligned_cols=116  Identities=24%  Similarity=0.285  Sum_probs=86.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      .++++||++|+|+|+++..++.. +..+|++||+|+..++.|++++..++  ++..+++++.+|+++++++.   .++||
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            35789999999999998877664 46799999999999999999998763  33358999999999998652   46899


Q ss_pred             EEEEeCCCCCCCCCCcCCch-----HHHHHHHhccccCCCceEEEeCCCC
Q 019699          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t-----~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +||+|++.-.. .. ..+++     .++++. +.++|+|||++++-+.+.
T Consensus       296 lVilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        296 VIVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             EEEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC
Confidence            99999974211 11 11211     234455 578999999988765443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.26  E-value=2.6e-10  Score=100.91  Aligned_cols=124  Identities=15%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++..+||+||||+|.++..+++..+..+|+++|+++.+++.|++++....    -++++++.+|+...+   .++||+|
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v  101 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAI  101 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEE
Confidence            456789999999999999999987667899999999999999999876432    246999999975433   3579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~  246 (337)
                      +++....       .  ..++++. +.+.|+|||.++++...      .+....+.+.+++. |..+.
T Consensus       102 ~~~~~~~-------~--~~~~l~~-~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        102 FIGGSGG-------N--LTAIIDW-SLAHLHPGGRLVLTFIL------LENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             EECCCcc-------C--HHHHHHH-HHHhcCCCeEEEEEEec------HhhHHHHHHHHHHCCCCcce
Confidence            9875311       1  2467887 78999999999886421      22234555566554 44333

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.25  E-value=2.6e-11  Score=103.59  Aligned_cols=107  Identities=21%  Similarity=0.297  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecchhHHHHHHH-hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      .+..+||++|||+|.++..++ +..+..++++||+++++++.|++.+....    -++++++.+|..+ +... .++||+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~   76 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDI   76 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeE
Confidence            356899999999999999999 55667899999999999999999876432    2489999999988 6532 278999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+++..-..      .-....+++. +.+.|+++|++++..
T Consensus        77 I~~~~~l~~------~~~~~~~l~~-~~~~lk~~G~~i~~~  110 (152)
T PF13847_consen   77 IISNGVLHH------FPDPEKVLKN-IIRLLKPGGILIISD  110 (152)
T ss_dssp             EEEESTGGG------TSHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEcCchhh------ccCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            999965321      1112468888 799999999998764

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.24  E-value=2e-10  Score=108.59  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=103.4

Q ss_pred             CCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH---hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEE
Q 019699           56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL---LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC  132 (337)
Q Consensus        56 ~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l---~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~V  132 (337)
                      |-|+|.-...- +|..+.++.......++    .+.++.-.+   +....+.+||++|||+|.++..++++.+..+|+++
T Consensus        77 Pl~yi~g~~~f-~g~~f~v~~~vlipr~~----te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~av  151 (284)
T TIGR03533        77 PVAYLTNEAWF-AGLEFYVDERVLIPRSP----IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAV  151 (284)
T ss_pred             cHHHHcCCCee-cCcEEEECCCCccCCCc----hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEE
Confidence            56666543322 36667777655444333    222221111   11234679999999999999999988767799999


Q ss_pred             ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCC-CC----------CCCcCC------
Q 019699          133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EG----------GPCYKL------  195 (337)
Q Consensus       133 Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~-~~----------~p~~~L------  195 (337)
                      |+|+.+++.|+++...+.  + +.+++++.+|..+.+.  .++||+|++|++.-. ..          .|...|      
T Consensus       152 Dis~~al~~A~~n~~~~~--~-~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dG  226 (284)
T TIGR03533       152 DISPDALAVAEINIERHG--L-EDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDG  226 (284)
T ss_pred             ECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcH
Confidence            999999999999976542  1 3589999999877653  357999999986211 00          011111      


Q ss_pred             --chHHHHHHHhccccCCCceEEEeCC
Q 019699          196 --YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       196 --~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                        +.+.+++. +.++|+|||.+++..+
T Consensus       227 l~~~~~il~~-a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       227 LDLVRRILAE-AADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence              12456776 6889999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.24  E-value=5e-10  Score=104.59  Aligned_cols=113  Identities=20%  Similarity=0.333  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|||+|.++..++++.+..+++++|+++.+++.|++++...    ...+++++.+|..+.+.  .++||+|+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv  180 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV  180 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence            4567999999999999999999877789999999999999999987611    24689999999855432  36899999


Q ss_pred             EeCCCCCC------------CCCCcCCch--------HHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIE------------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~------------~~p~~~L~t--------~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ++++.-..            ..|...++.        ..+++. +.+.|+|||.+++..+
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIG  239 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence            99862110            011111221        446666 5799999999998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.21  E-value=4e-10  Score=106.48  Aligned_cols=155  Identities=19%  Similarity=0.287  Sum_probs=103.2

Q ss_pred             cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH--h-cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEE
Q 019699           55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--L-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM  131 (337)
Q Consensus        55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l--~-~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~  131 (337)
                      -|.|+|.=... -+|+-+.++-......++    +|.++...+  + ......+||++|||+|.++..++++.+..+|++
T Consensus        69 ~pl~yi~g~~~-f~g~~f~v~~~vliPr~e----te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~a  143 (284)
T TIGR00536        69 VPVAYLLGSKE-FYGLEFFVNEHVLIPRPE----TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIA  143 (284)
T ss_pred             CCHHHHhCcce-EcCeEEEECCCCcCCCCc----cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEE
Confidence            45666643322 247777777665554443    222222222  1 122226999999999999999998876779999


Q ss_pred             EECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC-----------CCCcCC-----
Q 019699          132 CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG-----------GPCYKL-----  195 (337)
Q Consensus       132 VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~-----------~p~~~L-----  195 (337)
                      +|++++.++.|+++...+.  + ..+++++.+|..+.+.  .++||+|++|++.-...           .|...|     
T Consensus       144 vDis~~al~~a~~n~~~~~--~-~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d  218 (284)
T TIGR00536       144 VDISPDALAVAEENAEKNQ--L-EHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD  218 (284)
T ss_pred             EECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc
Confidence            9999999999999876442  1 3479999999876543  23799999998621110           111111     


Q ss_pred             ---chHHHHHHHhccccCCCceEEEeCC
Q 019699          196 ---YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       196 ---~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                         +-+.+++. +.+.|+|||++++..+
T Consensus       219 gl~~~~~ii~~-a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       219 GLNILRQIIEL-APDYLKPNGFLVCEIG  245 (284)
T ss_pred             HHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence               22456666 6789999999999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.21  E-value=8e-10  Score=98.85  Aligned_cols=130  Identities=18%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ......+||++|+|+|.++.++++. .+..+|+++|+++.+++.+++++..+.  . ..+++++.+|+.+++.....+||
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~-~~~v~~~~~d~~~~l~~~~~~~D  113 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--V-LNNIVLIKGEAPEILFTINEKFD  113 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCCeEEEEechhhhHhhcCCCCC
Confidence            3356689999999999999998875 345689999999999999999876432  1 35789999999888766557899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                      .|+++....   .      -.++++. +.++|+|||.+++...      ..+.+..+.+.+++. | .+..+
T Consensus       114 ~V~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g~-~~~~~  168 (198)
T PRK00377        114 RIFIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENIGF-NLEIT  168 (198)
T ss_pred             EEEECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHcCC-CeEEE
Confidence            999965211   1      1467887 7899999999987642      344566777777654 4 44433

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.21  E-value=4.5e-10  Score=107.33  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=103.5

Q ss_pred             cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhH--HHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEE
Q 019699           55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHP--ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC  132 (337)
Q Consensus        55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~--~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~V  132 (337)
                      -|.|+|.=...- +|..+.++-.+....++.   .+.+...  ..+....+.+||++|||+|.++..++++.+..+|+++
T Consensus        88 ~Pl~yi~g~~~F-~g~~f~v~~~vlipr~~t---e~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~av  163 (307)
T PRK11805         88 IPAAYLTNEAWF-CGLEFYVDERVLVPRSPI---AELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAV  163 (307)
T ss_pred             ccHHHHcCcceE-cCcEEEECCCCcCCCCch---HHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEE
Confidence            366666543322 366677776554443331   1111111  1111122378999999999999999988777899999


Q ss_pred             ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC----------CCCCcCCc-----
Q 019699          133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY-----  196 (337)
Q Consensus       133 Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~----------~~p~~~L~-----  196 (337)
                      |+|+.+++.|+++...+.  + ..+++++.+|..+.+.  .++||+|++|++. +..          ..|...|+     
T Consensus       164 Dis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dG  238 (307)
T PRK11805        164 DISPDALAVAEINIERHG--L-EDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDG  238 (307)
T ss_pred             eCCHHHHHHHHHHHHHhC--C-CCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCch
Confidence            999999999999986542  1 3579999999887663  3579999999862 110          01211121     


Q ss_pred             ---hHHHHHHHhccccCCCceEEEeCC
Q 019699          197 ---TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       197 ---t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                         .+.+++. +.++|+|||.+++..+
T Consensus       239 l~~~~~i~~~-a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        239 LDLVRRILAE-APDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence               2456776 6889999999999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.21  E-value=5.5e-10  Score=113.52  Aligned_cols=155  Identities=20%  Similarity=0.324  Sum_probs=108.4

Q ss_pred             cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhc--------------------------CCCCCeEEE
Q 019699           55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH--------------------------HPNPKTIFI  108 (337)
Q Consensus        55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~--------------------------~~~p~~VLi  108 (337)
                      -|.|+|.=...- +|+-+.+|-.+....++    +|.|+...+-.                          ..++.+||+
T Consensus        70 ePlqYI~G~~~F-~g~~f~V~~~VLIPRpe----TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD  144 (506)
T PRK01544         70 EPIAYITGVKEF-YSREFIVNKHVLIPRSD----TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE  144 (506)
T ss_pred             CCHHHHhCcCEE-cCcEEEeCCCcccCCCc----HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence            466776654333 58889999888887666    55554433211                          113568999


Q ss_pred             EecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CC
Q 019699          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PI  187 (337)
Q Consensus       109 IG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~  187 (337)
                      ||||+|.++..+++..+..+|+++|+|+.+++.|+++...+.  + +.+++++.+|..+.+.  .++||+|+++++. +.
T Consensus       145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l-~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~  219 (506)
T PRK01544        145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--V-TDRIQIIHSNWFENIE--KQKFDFIVSNPPYISH  219 (506)
T ss_pred             ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--C-ccceeeeecchhhhCc--CCCccEEEECCCCCCc
Confidence            999999999999877667899999999999999999875432  1 3589999999876653  3579999999862 11


Q ss_pred             CC-----------CCCcCCc----hHHHH----HHHhccccCCCceEEEeCC
Q 019699          188 EG-----------GPCYKLY----TKSFY----EFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       188 ~~-----------~p~~~L~----t~ef~----~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ..           .|...|+    ..++|    +. +.+.|+|||.+++..+
T Consensus       220 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig  270 (506)
T PRK01544        220 SEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG  270 (506)
T ss_pred             hhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence            00           1211233    22344    45 5689999999998764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=6.2e-10  Score=105.02  Aligned_cols=153  Identities=22%  Similarity=0.281  Sum_probs=104.0

Q ss_pred             ecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH--hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEE
Q 019699           54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM  131 (337)
Q Consensus        54 ~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l--~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~  131 (337)
                      .-|-|+|.-... .+|..+.++-.+.....|    +|.++...+  ..+... +||+||+|+|.++..++++.+..+|++
T Consensus        66 ~~P~~yi~g~~~-f~gl~~~v~~~vliPr~d----Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a  139 (280)
T COG2890          66 GEPVAYILGSAE-FGGLRFKVDEGVLIPRPD----TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIA  139 (280)
T ss_pred             CCCHhHhhccCe-ecceeeeeCCCceecCCc----hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEE
Confidence            334555554322 246778888777777677    444433222  112222 899999999999999999988889999


Q ss_pred             EECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC---C-------CCCcCC-----
Q 019699          132 CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE---G-------GPCYKL-----  195 (337)
Q Consensus       132 VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~---~-------~p~~~L-----  195 (337)
                      +||++..+++|+++...+.  +  .++.++.+|..+-+   .++||+|++++|- |..   .       .|...|     
T Consensus       140 ~Dis~~Al~~A~~Na~~~~--l--~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d  212 (280)
T COG2890         140 VDISPDALALARENAERNG--L--VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD  212 (280)
T ss_pred             EECCHHHHHHHHHHHHHcC--C--ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence            9999999999999987653  1  45666666654443   4599999999982 221   0       111011     


Q ss_pred             ---chHHHHHHHhccccCCCceEEEeCC
Q 019699          196 ---YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       196 ---~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                         ..+.|... +.+.|+|+|++++..+
T Consensus       213 Gl~~~~~i~~~-a~~~l~~~g~l~le~g  239 (280)
T COG2890         213 GLEVYRRILGE-APDILKPGGVLILEIG  239 (280)
T ss_pred             HHHHHHHHHHh-hHHHcCCCcEEEEEEC
Confidence               22456666 6899999999999875

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.20  E-value=8.5e-10  Score=101.38  Aligned_cols=113  Identities=17%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||++|||+|..+..+++..+..+++++|+++.+++.|++.+....    -++++++.+|+.+.+.  .++||+|+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~--~~~fD~Vi  159 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPLP--GGKFDLIV  159 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccCc--CCceeEEE
Confidence            45679999999999999999987667799999999999999999876432    2479999999877542  47899999


Q ss_pred             EeCCCCCCCCC---CcC---------C--------chHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGP---CYK---------L--------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p---~~~---------L--------~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++-.....+   ...         +        .-..|++. +.+.|+|||.+++..+
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG  218 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence            99862210000   000         0        01357777 7899999999998753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.1e-10  Score=109.65  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ..+|||+|||.|.++..+++..|..++++||+|...++.||+++..+.  .  ++.+++..|..+-+.   ++||.||++
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~--~--~~~~v~~s~~~~~v~---~kfd~IisN  231 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG--V--ENTEVWASNLYEPVE---GKFDLIISN  231 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC--C--CccEEEEeccccccc---ccccEEEeC
Confidence            459999999999999999999889999999999999999999987653  1  222788888765554   489999999


Q ss_pred             CCCCCCCCCC-cCCchHHHHHHHhccccCCCceE--EEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          183 LADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIF--VTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       183 ~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvl--v~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ++-..  |.. .+-...++++. ++++|++||-|  |+|.. +          .....|+++|.+|...
T Consensus       232 PPfh~--G~~v~~~~~~~~i~~-A~~~L~~gGeL~iVan~~-l----------~y~~~L~~~Fg~v~~l  286 (300)
T COG2813         232 PPFHA--GKAVVHSLAQEIIAA-AARHLKPGGELWIVANRH-L----------PYEKKLKELFGNVEVL  286 (300)
T ss_pred             CCccC--CcchhHHHHHHHHHH-HHHhhccCCEEEEEEcCC-C----------ChHHHHHHhcCCEEEE
Confidence            98543  321 12234589998 89999999965  45522 1          1235788899987654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.19  E-value=6e-10  Score=97.85  Aligned_cols=129  Identities=24%  Similarity=0.242  Sum_probs=102.8

Q ss_pred             HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH
Q 019699           90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (337)
Q Consensus        90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l  169 (337)
                      ++++ +..+...+...+++||+|+|+++.+++...+..+|+++|-|++.++..+++....    .-++++++.+|+-+.|
T Consensus        23 Ral~-ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L   97 (187)
T COG2242          23 RALT-LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHH-HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhh
Confidence            4444 2334445567999999999999999997778899999999999999999987643    3589999999999999


Q ss_pred             hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      .+.+ ++|.||+...-.          -.+.++. +..+|+|||.+++|..      ..+....+++.+++.
T Consensus        98 ~~~~-~~daiFIGGg~~----------i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~  151 (187)
T COG2242          98 PDLP-SPDAIFIGGGGN----------IEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQL  151 (187)
T ss_pred             cCCC-CCCEEEECCCCC----------HHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHc
Confidence            8765 899999986521          1366777 7899999999999963      445666677777766

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.4e-10  Score=104.55  Aligned_cols=126  Identities=22%  Similarity=0.337  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .....+||+.|.|+|.++..++.. .+..+|+.+|++++..+.|++++...  .+ ..++++..+|..+....  +.||+
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l-~d~v~~~~~Dv~~~~~~--~~vDa  166 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GL-GDRVTLKLGDVREGIDE--EDVDA  166 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cc-ccceEEEeccccccccc--cccCE
Confidence            356789999999999999999964 45689999999999999999998754  23 34599999999988754  48999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                      |++|.++||           ++.+. ++++|+|||.+++.+  |    .-++.+.++..|++. |-+...+
T Consensus       167 v~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P----~veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         167 VFLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--P----TVEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             EEEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--C----CHHHHHHHHHHHHhcCccchhhh
Confidence            999999988           56677 799999999999874  3    346777888888888 6655444

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.19  E-value=2.5e-10  Score=111.70  Aligned_cols=131  Identities=18%  Similarity=0.228  Sum_probs=94.9

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ..+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...+.  ..+||+|+++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~--~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE--PFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC--CCCEEEEEEC
Confidence            46999999999999999998877789999999999999999988654210 12478999999876542  3579999999


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      ++.......... ....+++. ++++|+|||.+.+-..     .+.    .....|++.|..+..
T Consensus       306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~n-----r~l----~y~~~L~~~fg~~~~  359 (378)
T PRK15001        306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVAN-----RHL----DYFHKLKKIFGNCTT  359 (378)
T ss_pred             cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEe-----cCc----CHHHHHHHHcCCceE
Confidence            874331001111 23578888 7999999998776532     111    123567778887654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.18  E-value=5.5e-10  Score=108.21  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=92.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ...+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++.+..+.     -..+++.+|+...+   .++||+|++
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs  267 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS  267 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence            4568999999999999999988777799999999999999999887542     23577888886543   468999999


Q ss_pred             eCCCCCCCCCCc-CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          182 DLADPIEGGPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       182 D~~dp~~~~p~~-~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      +++-..  +... .-...+|++. +.++|+|||.+.+-...   +..   +   -..+.+.|+.+...
T Consensus       268 NPPFH~--g~~~~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l~---y---~~~l~~~Fg~~~~l  323 (342)
T PRK09489        268 NPPFHD--GIQTSLDAAQTLIRG-AVRHLNSGGELRIVANA---FLP---Y---PDLLDETFGSHEVL  323 (342)
T ss_pred             CCCccC--CccccHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CCC---h---HHHHHHHcCCeEEE
Confidence            986433  2111 1123689998 89999999987553321   111   1   13566778877544

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.18  E-value=5.1e-10  Score=109.35  Aligned_cols=130  Identities=16%  Similarity=0.182  Sum_probs=101.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI  179 (337)
                      .....+|+||||+|..+..+++..+...+++||+++.+++.|.+......    -++++++.+|+..++... .+++|.|
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEE
Confidence            34568999999999999999988778899999999999999988765431    257999999998775432 4789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      ++..++||...+...+...+|++. ++++|+|||.+.+.+.      +.+.+..+...+.+.
T Consensus       197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~  251 (390)
T PRK14121        197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL  251 (390)
T ss_pred             EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence            999999984333235677899998 8999999999988753      344555555555443

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.18  E-value=7.6e-10  Score=108.37  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=90.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv  178 (337)
                      +.++||.+-+=+|+.+..++.- +..+||.||++...++.|++++.+++  ++..+.+++.+|+++|++..   +++||+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            4899999999999999998874 56799999999999999999999874  55678999999999999875   359999


Q ss_pred             EEEeCCCCCCCCCCcCCch--H---HHHHHHhccccCCCceEEEeCCCC
Q 019699          179 IIGDLADPIEGGPCYKLYT--K---SFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t--~---ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ||+|+|.-.. ++ ..++.  +   +.... +.++|+|||++++-+.+.
T Consensus       294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence            9999984322 22 12222  2   23343 468999999998766543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.18  E-value=9.5e-11  Score=104.53  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=97.5

Q ss_pred             HHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699           89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus        89 ~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      .+.+.++|+   ..+.+|.+||||.|..+..++++.|...|+++|-|++|++.|++.+         |++++..+|.+.|
T Consensus        20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w   87 (257)
T COG4106          20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW   87 (257)
T ss_pred             HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence            466777666   4788999999999999999999999999999999999999998864         6788999999998


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHH
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l  238 (337)
                      -  .....|+|+.++.-.|  -| .|   .+.|.. +-..|+|||++.+|.  |+ ..+...+..+..+.
T Consensus        88 ~--p~~~~dllfaNAvlqW--lp-dH---~~ll~r-L~~~L~Pgg~LAVQm--Pd-N~depsH~~mr~~A  145 (257)
T COG4106          88 K--PEQPTDLLFANAVLQW--LP-DH---PELLPR-LVSQLAPGGVLAVQM--PD-NLDEPSHRLMRETA  145 (257)
T ss_pred             C--CCCccchhhhhhhhhh--cc-cc---HHHHHH-HHHhhCCCceEEEEC--CC-ccCchhHHHHHHHH
Confidence            3  3467999999998666  33 22   245566 578999999999997  32 23334444444443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.17  E-value=8.4e-10  Score=98.43  Aligned_cols=104  Identities=21%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||++|||+|.++.++++..+..+|++||+|+++++.+++++....    -++++++.+|+.+.+......+|.|+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence            45679999999999999999876556899999999999999999876432    24799999999776544445678888


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...     +     -.++++. +.++|+|||.+++..
T Consensus       115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~  142 (196)
T PRK07402        115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA  142 (196)
T ss_pred             EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence            87421     1     1467887 789999999999875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.17  E-value=1.8e-10  Score=106.98  Aligned_cols=100  Identities=18%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...+.+||+||||+|.+++.+++..+..+|+++|+++.+++.|++.           +++++.+|+.++.  ..++||+|
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v   93 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVV   93 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEE
Confidence            3567899999999999999999876667999999999999999762           4778999987763  24689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-.+  -+    -...+++. +.++|+|||.+++..
T Consensus        94 ~~~~~l~~--~~----d~~~~l~~-~~~~LkpgG~l~~~~  126 (255)
T PRK14103         94 VSNAALQW--VP----EHADLLVR-WVDELAPGSWIAVQV  126 (255)
T ss_pred             EEehhhhh--CC----CHHHHHHH-HHHhCCCCcEEEEEc
Confidence            99876433  11    12567888 799999999998874

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.17  E-value=8.1e-10  Score=102.63  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi  180 (337)
                      .+.+||++|||+|.++..+++..+..+|++||+|+.+++.|++++..+       +++++.+|..+++.. ..++||+|+
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEE
Confidence            346899999999999999988766679999999999999999987643       147899998887643 235799999


Q ss_pred             EeCCC-CCCC-----------CCCcCCc--------hHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLAD-PIEG-----------GPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~d-p~~~-----------~p~~~L~--------t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++- |...           .|...|+        -+.+++. +.+.|+|||.+++-.+
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETS  217 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            99972 2110           1111111        2456666 6799999999988653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.16  E-value=2.4e-10  Score=106.03  Aligned_cols=101  Identities=18%  Similarity=0.296  Sum_probs=82.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..+..+|++||+++.+++.|++.+         ++++++.+|+..+..  .++||+|+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v~   98 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQP--PQALDLIF   98 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccCC--CCCccEEE
Confidence            4578999999999999999998766789999999999999999863         467899999887642  36899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++..-.+.  +    -...+++. +.++|+|||.++++.
T Consensus        99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~  130 (258)
T PRK01683         99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM  130 (258)
T ss_pred             EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence            98764431  1    12578888 799999999999875

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.15  E-value=2.5e-10  Score=105.61  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc------
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------  172 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~------  172 (337)
                      ..++++||+||.+.|..+..+++- ++..+|+.+|+|++..+.|+++|....  + ..+++++.+|+.+.|.+.      
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~  153 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKY  153 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhcccc
Confidence            357899999999999999888764 456799999999999999999997542  2 479999999999998763      


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .++||+||+|+.-        ..| .++|+. +.++|++||++++.
T Consensus       154 ~~~fD~iFiDadK--------~~Y-~~y~~~-~l~ll~~GGviv~D  189 (247)
T PLN02589        154 HGTFDFIFVDADK--------DNY-INYHKR-LIDLVKVGGVIGYD  189 (247)
T ss_pred             CCcccEEEecCCH--------HHh-HHHHHH-HHHhcCCCeEEEEc
Confidence            3689999999752        122 478887 78999999999874

>PLN03075 nicotianamine synthase; Provisional

Probab=99.15  E-value=9.1e-10  Score=103.99  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCCCeEEEEecchhHHH-H-HHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTA-R-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~-~-~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..|++||+||+|.|.+. . .+.++.+..+++.+|+|++.++.||+++.... .+ .+|++++.+|+.+.... .++||+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~-gL-~~rV~F~~~Da~~~~~~-l~~FDl  198 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDP-DL-SKRMFFHTADVMDVTES-LKEYDV  198 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhcc-Cc-cCCcEEEECchhhcccc-cCCcCE
Confidence            37899999999977443 3 33346778899999999999999999985311 11 47899999999885322 367999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC-CcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA-GIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD  257 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p-~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~  257 (337)
                      |++++-..+..     -.-.+.++. +.++|+|||++++....- ..+..+....   ..++ -|..   +...-|+-+-
T Consensus       199 VF~~ALi~~dk-----~~k~~vL~~-l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~---~~~~-gf~~---~~~~~P~~~v  265 (296)
T PLN03075        199 VFLAALVGMDK-----EEKVKVIEH-LGKHMAPGALLMLRSAHGARAFLYPVVDP---CDLR-GFEV---LSVFHPTDEV  265 (296)
T ss_pred             EEEeccccccc-----ccHHHHHHH-HHHhcCCCcEEEEecccchHhhcCCCCCh---hhCC-CeEE---EEEECCCCCc
Confidence            99996433210     112578888 799999999999986311 0001111000   1122 3332   3333455334


Q ss_pred             ceEEEEEecCCC
Q 019699          258 TWGWIMASDSPF  269 (337)
Q Consensus       258 ~~~~~~as~~p~  269 (337)
                      .|.++++.|...
T Consensus       266 ~Nsvi~~r~~~~  277 (296)
T PLN03075        266 INSVIIARKPGG  277 (296)
T ss_pred             eeeEEEEEeecC
Confidence            578999998654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.15  E-value=4.6e-10  Score=104.23  Aligned_cols=106  Identities=22%  Similarity=0.344  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||++|||+|..+..+++.  ..+|++||+++++++.|++......   ..++++++.+|..+......++||+|+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            56789999999999999999986  3689999999999999999875431   246899999999876444457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-.....|      ..+++. +.+.|+|||++++.
T Consensus       118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~  148 (255)
T PRK11036        118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM  148 (255)
T ss_pred             ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence            87542211112      467888 79999999998764

>PLN02672 methionine S-methyltransferase

Probab=99.13  E-value=2.3e-09  Score=116.18  Aligned_cols=172  Identities=17%  Similarity=0.143  Sum_probs=111.8

Q ss_pred             ceEEEEcCccccccCChhhHHHHHHhHHHhcCC----CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699           69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHP----NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (337)
Q Consensus        69 G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~----~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~  144 (337)
                      |..|.++-.+.....+    +|.++.. +-.++    .+++||+||||+|.++..+++..+..+|++|||++++++.|++
T Consensus        86 ~l~~~V~p~VLIPRpe----TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~  160 (1082)
T PLN02672         86 KLTMMEIPSIFIPEDW----SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI  160 (1082)
T ss_pred             CCceeeCCCcccCchh----HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            5556666666666554    4444432 22232    2468999999999999999987766799999999999999999


Q ss_pred             hhhhccCC------------CCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC-----------CC---------C
Q 019699          145 YLVVNKEA------------FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GG---------P  191 (337)
Q Consensus       145 ~f~~~~~~------------~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~-----------~~---------p  191 (337)
                      +...+...            ....|++++.+|..+.+.....+||+|+++++- +..           ..         |
T Consensus       161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p  240 (1082)
T PLN02672        161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN  240 (1082)
T ss_pred             HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence            98653210            012489999999988875433479999999982 110           01         1


Q ss_pred             CcCCch-------HHHHHHH---hccccCCCceEEEeCCCCCcCCChhHHH-HHHHHHhhhcCceeEEEee
Q 019699          192 CYKLYT-------KSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKYVVPYSAH  251 (337)
Q Consensus       192 ~~~L~t-------~ef~~~~---~~~~L~p~Gvlv~~~~~p~~~~~~~~~~-~i~~~l~~vF~~v~~~~~~  251 (337)
                      ...|+.       .+||+.+   +.++|+|||.++++.+.    .+.+.+. .+.+.  .-|..+..|...
T Consensus       241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~----~q~~~v~~~l~~~--~gf~~~~~~~~~  305 (1082)
T PLN02672        241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG----RPGQAVCERLFER--RGFRITKLWQTK  305 (1082)
T ss_pred             cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc----cHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence            122322       2344442   45799999999999862    2333333 23332  237777766543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.12  E-value=4.3e-10  Score=104.06  Aligned_cols=107  Identities=17%  Similarity=0.292  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHh--cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ++..+||+||||+|..+..+++  ..+..++++||+++.+++.|++.+....   ...+++++.+|..+..   ...||+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~  128 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM  128 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence            5668999999999999988877  3456899999999999999999876432   1358999999986542   245999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++...-... .+   -....+++. +.+.|+|||.+++.
T Consensus       129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~  163 (247)
T PRK15451        129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS  163 (247)
T ss_pred             EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            9887542210 01   112468888 89999999998875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.12  E-value=1.7e-09  Score=94.96  Aligned_cols=108  Identities=17%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||++|||+|.++..+++..+  +|+++|+++++++.+++++..+     ..+++++.+|..+..   .++||+|+
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~---~~~fD~Vi   87 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV---RGKFDVIL   87 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc---CCcccEEE
Confidence            4567899999999999999998643  8999999999999999988653     246888999976654   35899999


Q ss_pred             EeCCCCCCCCCC---------------cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~---------------~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++++........               .......|++. +.++|+|||.+++..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQ  140 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEE
Confidence            998632110000               00113568888 799999999887754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.11  E-value=5.2e-09  Score=97.04  Aligned_cols=161  Identities=16%  Similarity=0.154  Sum_probs=100.7

Q ss_pred             eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc
Q 019699           70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN  149 (337)
Q Consensus        70 ~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~  149 (337)
                      ..+.+|-.+.+.... +.-+.++.+.-......+++||++|||+|.++..+.+. +..+|+++|+|+.+++.|++++..+
T Consensus        88 ~~i~i~p~~afgtg~-h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~  165 (250)
T PRK00517         88 INIELDPGMAFGTGT-HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELN  165 (250)
T ss_pred             EEEEECCCCccCCCC-CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence            456777655443322 12223332211111346789999999999999887775 3457999999999999999988654


Q ss_pred             cCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChh
Q 019699          150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE  229 (337)
Q Consensus       150 ~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~  229 (337)
                      .  . ..++.+..+|.         +||+|+++....       .  -..+++. +.++|+|||.+++...      ...
T Consensus       166 ~--~-~~~~~~~~~~~---------~fD~Vvani~~~-------~--~~~l~~~-~~~~LkpgG~lilsgi------~~~  217 (250)
T PRK00517        166 G--V-ELNVYLPQGDL---------KADVIVANILAN-------P--LLELAPD-LARLLKPGGRLILSGI------LEE  217 (250)
T ss_pred             C--C-CceEEEccCCC---------CcCEEEEcCcHH-------H--HHHHHHH-HHHhcCCCcEEEEEEC------cHh
Confidence            2  1 23444444432         799999876421       1  1356777 7899999999998642      122


Q ss_pred             HHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEec
Q 019699          230 VFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       230 ~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      ....+.+.+++. |.......      .+.|..+++.|
T Consensus       218 ~~~~v~~~l~~~Gf~~~~~~~------~~~W~~~~~~~  249 (250)
T PRK00517        218 QADEVLEAYEEAGFTLDEVLE------RGEWVALVGKK  249 (250)
T ss_pred             hHHHHHHHHHHCCCEEEEEEE------eCCEEEEEEEe
Confidence            344566667665 54433222      24587776654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.11  E-value=8.7e-10  Score=116.27  Aligned_cols=116  Identities=16%  Similarity=0.188  Sum_probs=88.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||++|+|+|+++..+++. +..+|++||+++..++.|++++..++  ++..+++++.+|+.+|++...++||+||
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIi  613 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIF  613 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence            35789999999999999999986 46689999999999999999997763  3335899999999999976667899999


Q ss_pred             EeCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++.-.........+     -.+.++. +.++|+|||++++.+.
T Consensus       614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        614 IDPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNN  657 (702)
T ss_pred             ECCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeC
Confidence            9987321100000111     1345565 5789999999987654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.10  E-value=5.2e-09  Score=93.96  Aligned_cols=146  Identities=14%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             eEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHH
Q 019699           59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV  138 (337)
Q Consensus        59 ~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~v  138 (337)
                      .+.|+.....|+-|..-.........+..+..++..+  ....+..+||++|+|+|.++.+++... ..+|++||+|+..
T Consensus        12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l--~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a   88 (199)
T PRK10909         12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWL--APVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAV   88 (199)
T ss_pred             CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHH--hhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHH
Confidence            3667666656776654111101101112222222221  111345799999999999999876654 5799999999999


Q ss_pred             HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhc--cccCCCceEE
Q 019699          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFV  216 (337)
Q Consensus       139 i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~--~~L~p~Gvlv  216 (337)
                      ++.+++++..+.    -.+++++.+|+.+++....+.||+|++|++...  +    + ..+.++. +.  ..|+|+|+++
T Consensus        89 ~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv~  156 (199)
T PRK10909         89 AQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALIY  156 (199)
T ss_pred             HHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEEE
Confidence            999999987653    137999999999988654457999999997321  2    1 2233343 33  4589999998


Q ss_pred             EeC
Q 019699          217 TQA  219 (337)
Q Consensus       217 ~~~  219 (337)
                      +..
T Consensus       157 ve~  159 (199)
T PRK10909        157 VES  159 (199)
T ss_pred             EEe
Confidence            875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.09  E-value=2e-09  Score=98.05  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||+||||+|.++..++++. +..+|+++|+++.+++.|++.+...    .-++++++.+|+.++. -..++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V  118 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV  118 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence            456899999999999999998763 5579999999999999999887532    1357999999987642 234789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+    ...++++. +.+.|+|||.+++..
T Consensus       119 ~~~~~l~~--~~----~~~~~l~~-~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       119 TIGFGLRN--VP----DYMQVLRE-MYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEeccccc--CC----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence            98764322  11    12467887 789999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.09  E-value=1.8e-10  Score=89.01  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=73.3

Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      |+||+|+|..+..++++ +..+++++|+++++++.+++...       ..+++++.+|..++ .-.+++||+|++...-.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence            89999999999999998 57899999999999999999764       24566999997765 33468999999886532


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +.      ---..++++ ++|.|+|||.+++
T Consensus        72 ~~------~~~~~~l~e-~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HL------EDPEAALRE-IYRVLKPGGRLVI   95 (95)
T ss_dssp             GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred             ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence            20      123578888 8999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.09  E-value=4.1e-09  Score=95.95  Aligned_cols=109  Identities=15%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||++|||+|.++..+++. +..+|+++|+|+.+++.+++++...+     .+++++.+|..+++.  .++||+|+
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi  106 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV  106 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence            34579999999999999998886 34599999999999999999876432     358899999877653  36899999


Q ss_pred             EeCCCCCCC-------CCCc--------CCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEG-------GPCY--------KLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~-------~p~~--------~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++.....       ++..        ...-..|++. +.+.|++||.+++-
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~  158 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLV  158 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            997522100       0000        0012457777 78999999998864

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.06  E-value=2.4e-09  Score=98.99  Aligned_cols=145  Identities=19%  Similarity=0.233  Sum_probs=100.4

Q ss_pred             hhhHHHHHHhHH-HhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE
Q 019699           85 EFIYHESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI  162 (337)
Q Consensus        85 e~~Y~e~l~~~~-l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~  162 (337)
                      .-+|..-+..+. .+-..+..+||+.|.|+|+++..+++. .+..+|...|+.++-.+.|+++|....   -+.++++++
T Consensus        22 QIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~   98 (247)
T PF08704_consen   22 QIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHH   98 (247)
T ss_dssp             ----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEE
T ss_pred             ceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEe
Confidence            345655443332 333467789999999999999999874 456799999999999999999997653   246899999


Q ss_pred             ccHHH--HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc-CCCceEEEeCCCCCcCCChhHHHHHHHHHh
Q 019699          163 NDARA--ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (337)
Q Consensus       163 ~D~~~--~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L-~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~  239 (337)
                      .|..+  |-......+|.||+|.++||.           .... +.++| ++||.+++.+  |    ..++....+..|+
T Consensus        99 ~Dv~~~g~~~~~~~~~DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P----~ieQv~~~~~~L~  160 (247)
T PF08704_consen   99 RDVCEEGFDEELESDFDAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--P----CIEQVQKTVEALR  160 (247)
T ss_dssp             S-GGCG--STT-TTSEEEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--S----SHHHHHHHHHHHH
T ss_pred             cceecccccccccCcccEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--C----CHHHHHHHHHHHH
Confidence            99853  422334789999999999983           2344 67899 8999999874  3    3567777788888


Q ss_pred             hh-cCceeEEEe
Q 019699          240 QV-FKYVVPYSA  250 (337)
Q Consensus       240 ~v-F~~v~~~~~  250 (337)
                      +. |.++..+.+
T Consensus       161 ~~gf~~i~~~Ev  172 (247)
T PF08704_consen  161 EHGFTDIETVEV  172 (247)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCeeeEEEEE
Confidence            74 777655543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.06  E-value=1.2e-09  Score=99.00  Aligned_cols=103  Identities=22%  Similarity=0.212  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||+||||+|..+..+++..+ ..+|++||+++++++.|++++....    -++++++.+|+.+.+.. ...||+
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~  149 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWEP-LAPYDR  149 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCcc-cCCCCE
Confidence            35668999999999999998887643 3579999999999999999886542    25799999999765432 368999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++...+.  .|          +. +.+.|+|||.+++..+
T Consensus       150 Ii~~~~~~~--~~----------~~-~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       150 IYVTAAGPK--IP----------EA-LIDQLKEGGILVMPVG  178 (215)
T ss_pred             EEEcCCccc--cc----------HH-HHHhcCcCcEEEEEEc
Confidence            999865322  11          23 4678999999988653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.05  E-value=3.8e-09  Score=97.03  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +.++.+||+||||+|-++..+.+..+..+|+++|+++.|++.|++......    ...++++.+||.+ |.-.+++||+|
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~v  123 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAV  123 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEE
Confidence            347899999999999999999998777899999999999999999875321    1229999999865 45557899999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+...-.+-..      -...+++ +.|+|+|||.+++.-
T Consensus       124 t~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle  156 (238)
T COG2226         124 TISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE  156 (238)
T ss_pred             EeeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence            98865222111      2457788 789999999877653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.8e-09  Score=96.78  Aligned_cols=103  Identities=25%  Similarity=0.294  Sum_probs=82.9

Q ss_pred             hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        98 ~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      +...+..+||+||+|+|..+.-+++.  +.+|+.||++++..+.|++++....    -.++.++++||..-... ...||
T Consensus        68 L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD  140 (209)
T COG2518          68 LELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYD  140 (209)
T ss_pred             hCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcC
Confidence            33456789999999999999888876  3599999999999999999987542    34599999999877654 36799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .|++.+.-+.  -|.          . +.+.|++||++++-.+
T Consensus       141 ~I~Vtaaa~~--vP~----------~-Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         141 RIIVTAAAPE--VPE----------A-LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEEeeccCC--CCH----------H-HHHhcccCCEEEEEEc
Confidence            9999987654  341          1 4568999999999876

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.04  E-value=6e-10  Score=88.58  Aligned_cols=96  Identities=24%  Similarity=0.428  Sum_probs=70.5

Q ss_pred             EEEEecchhHHHHHHHhcC---CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ||++|||+|..++.+++..   +..++++||+|+++++.+++.+...     .++++++.+|+.++ ....++||+|++-
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence            7999999999999999864   2379999999999999999987542     35899999999874 4456799999993


Q ss_pred             -C-CCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699          183 -L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (337)
Q Consensus       183 -~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G  213 (337)
                       . ....  .+   ---..+++. +.++|+|||
T Consensus        75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHL--SP---EELEALLRR-IARLLRPGG  101 (101)
T ss_dssp             TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred             CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence             3 1111  10   012568888 789999998

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.04  E-value=6.2e-09  Score=104.32  Aligned_cols=116  Identities=23%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||++|+|.|+.+..++++. +..+|+++|+++..++.+++++...+  .  .+++++.+|+.++.....++||+
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~~fD~  323 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG--L--TNIETKALDARKVHEKFAEKFDK  323 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C--CeEEEEeCCcccccchhcccCCE
Confidence            3456799999999999999988863 45799999999999999999886432  2  34999999998765433468999


Q ss_pred             EEEeCCCCCCC----CCCcC-------C-----chHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEG----GPCYK-------L-----YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~----~p~~~-------L-----~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++|++-...+    .|...       +     ...++++. +.+.|+|||.++..+.
T Consensus       324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystc  380 (444)
T PRK14902        324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTC  380 (444)
T ss_pred             EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcC
Confidence            99998621100    11100       0     12467887 7899999999987653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.04  E-value=8.4e-10  Score=101.44  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+|||+|||+|.++..++++. +..+|+++|+++.|++.|++......    ..+++++.+|+.+. .-.+++||+
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~  119 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDA  119 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeE
Confidence            3567899999999999999999873 45799999999999999999876432    24899999998763 334589999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++-..-..  -+    --...+++ +.|+|+|||.+++-
T Consensus       120 v~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il  152 (233)
T PF01209_consen  120 VTCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL  152 (233)
T ss_dssp             EEEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence            998763211  11    12457888 79999999987754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.04  E-value=1.7e-09  Score=101.08  Aligned_cols=109  Identities=14%  Similarity=0.016  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +++.+||+||||+|.++..++++. +..+|++||+++++++.|++....... ...++++++.+|+.+. .-.+++||+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V  149 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI  149 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence            456899999999999999888763 446999999999999999876542110 1235899999998653 2234689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-..  .+    -...++++ +.++|+|||.+++-
T Consensus       150 ~~~~~l~~--~~----d~~~~l~e-i~rvLkpGG~l~i~  181 (261)
T PLN02233        150 TMGYGLRN--VV----DRLKAMQE-MYRVLKPGSRVSIL  181 (261)
T ss_pred             EEeccccc--CC----CHHHHHHH-HHHHcCcCcEEEEE
Confidence            98654222  11    12578898 89999999988664

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.04  E-value=1e-08  Score=97.07  Aligned_cols=122  Identities=21%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...++||++|||+|.++..+++. +..+|++||+|+.+++.|++++..+.   -..++.+..+|....   ..++||+|+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~~---~~~~fDlVv  230 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQP---IEGKADVIV  230 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecccccc---cCCCceEEE
Confidence            45689999999999999888876 45799999999999999999987543   134677777763222   246899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      ++....       .  -.+++.. +.+.|+|||.+++..-      .......+.+.+++.|..+
T Consensus       231 an~~~~-------~--l~~ll~~-~~~~LkpgG~li~sgi------~~~~~~~v~~~~~~~f~~~  279 (288)
T TIGR00406       231 ANILAE-------V--IKELYPQ-FSRLVKPGGWLILSGI------LETQAQSVCDAYEQGFTVV  279 (288)
T ss_pred             EecCHH-------H--HHHHHHH-HHHHcCCCcEEEEEeC------cHhHHHHHHHHHHccCcee
Confidence            986411       1  1467787 7899999999987531      1233456666666656543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.03  E-value=1.7e-09  Score=97.31  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||+||||+|..+..+++.. ...+|+++|+++++++.|++++....  + ..+++++.+|+.+.+.. ..+||+|
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~-~~~v~~~~~d~~~~~~~-~~~fD~I  146 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--Y-WGVVEVYHGDGKRGLEK-HAPFDAI  146 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEECCcccCCcc-CCCccEE
Confidence            345799999999999998887753 24689999999999999999886432  1 24799999999876543 3689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++...+.       +     .+. +.+.|+|||.+++..
T Consensus       147 i~~~~~~~-------~-----~~~-l~~~L~~gG~lvi~~  173 (205)
T PRK13944        147 IVTAAAST-------I-----PSA-LVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEccCcch-------h-----hHH-HHHhcCcCcEEEEEE
Confidence            99975321       1     123 467899999998864

>PLN02244 tocopherol O-methyltransferase

Probab=99.03  E-value=1.4e-09  Score=105.45  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++.. ..+|++||+++.+++.|++......   ..++++++.+|+.+. .-..++||+|+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~  191 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW  191 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence            456899999999999999999865 4699999999999999998764321   135799999998663 22357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +......  .+    -...+++. +.++|+|||.+++.
T Consensus       192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~  222 (340)
T PLN02244        192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIV  222 (340)
T ss_pred             ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            8543211  11    13578898 79999999988874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.03  E-value=2.1e-09  Score=97.42  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+++||+||||+|.++..+++..+..+++++|+++.+++.+++.+.        ++++++.+|..+.. ...++||+|+
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi  103 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV  103 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence            45689999999999999999988767789999999999999988653        47889999987643 2346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.+...      ...+++. +++.|+|||.+++..
T Consensus       104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST  135 (240)
T ss_pred             EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence            9875333111      2468888 799999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00740 methyltransferase, putative

Probab=99.02  E-value=3e-09  Score=97.71  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ++..+||+||||+|..+..++++  .+..++++||+++.+++.|++.+....   ...+++++.+|..++-   ...+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~  125 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM  125 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence            45679999999999999998875  246899999999999999999875321   2357999999987652   245898


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++...-+.  .+.  --...+++. +.++|+|||.+++..
T Consensus       126 v~~~~~l~~--~~~--~~~~~~l~~-i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       126 VILNFTLQF--LPP--EDRIALLTK-IYEGLNPNGVLVLSE  161 (239)
T ss_pred             Eeeecchhh--CCH--HHHHHHHHH-HHHhcCCCeEEEEee
Confidence            887654222  110  012578898 899999999988763

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=2.1e-09  Score=97.30  Aligned_cols=102  Identities=25%  Similarity=0.278  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||+||+|+|..+..+++.. +..+|++||+++++++.|++.+....    -.+++++.+|+..... ....||+|
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I  149 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI  149 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence            466899999999999998887763 34699999999999999999886432    2579999999876443 23689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +++..-+.  .|          +. +.+.|+|||.+++..+
T Consensus       150 ~~~~~~~~--~~----------~~-l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        150 YVTAAGPD--IP----------KP-LIEQLKDGGIMVIPVG  177 (212)
T ss_pred             EECCCccc--ch----------HH-HHHhhCCCcEEEEEEc
Confidence            99865321  11          23 4567999999988653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.01  E-value=1.2e-09  Score=99.09  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      ++||+||||+|..+..++++.+..+++++|+++++++.+++.+....   -+++++++.+|..+..  ..++||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence            58999999999999999987666799999999999999999875421   2468999999975431  246899999754


Q ss_pred             CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .-..  .+  .  ...+++. +++.|+|||.+++..
T Consensus        76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence            3211  01  1  2578998 899999999988753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.00  E-value=2.7e-09  Score=95.42  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=78.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|||.|..+..++++  ..+|+++|+++.+++.+++......    -++++++..|..++-  ..++||+|+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~  100 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFIL  100 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEE
Confidence            35689999999999999999986  3689999999999999998765432    245888999976542  246799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +...-... .+   -....+++. ++++|+|||.+++
T Consensus       101 ~~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~  132 (197)
T PRK11207        101 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI  132 (197)
T ss_pred             EecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence            87542210 11   113578888 8999999998543

>PRK04266 fibrillarin; Provisional

Probab=99.00  E-value=1.3e-08  Score=93.16  Aligned_cols=132  Identities=15%  Similarity=0.151  Sum_probs=88.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--hhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~~~~~~yD  177 (337)
                      ..+..+||++|||+|.++..+++..+..+|+++|+++.+++.+++....      .+++.++.+|+....  ....++||
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence            3456799999999999999998875456899999999999876655321      257899999986421  11235699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC--CCCCcC-CChhHHHHHHHHHhhh-cCcee
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGIF-SHTEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~--~~p~~~-~~~~~~~~i~~~l~~v-F~~v~  246 (337)
                      +|++|..+|+  .      ...+++. +++.|+|||.+++..  .+.... ...+.++...+.+++. |..+.
T Consensus       144 ~i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~  207 (226)
T PRK04266        144 VIYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE  207 (226)
T ss_pred             EEEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence            9999976543  1      1235677 788999999988731  111101 1123344555677765 66544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.99  E-value=1.6e-09  Score=95.98  Aligned_cols=110  Identities=19%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      -+..+|||+-+|+|.++.|++.+ +..+|+.||.|+..++..++++....   ...+.+++.+|+..++.+.   ..+||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence            46789999999999999999997 57899999999999999999987432   1237999999999988654   68999


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~~  220 (337)
                      +|++|+|-..      .++-.+.++.+. ...|+++|++++...
T Consensus       117 iIflDPPY~~------~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  117 IIFLDPPYAK------GLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEEE--STTS------CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEEECCCccc------chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            9999986432      121234445411 378999999999863

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.99  E-value=6.6e-09  Score=92.06  Aligned_cols=127  Identities=20%  Similarity=0.261  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-----Hh-h-c
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE-S-R  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-----l~-~-~  172 (337)
                      ++..+||+||||+|+++..+++.. +..+|+++|+++..        .       .++++++.+|..+.     +. . .
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence            566899999999999998888764 45689999999854        1       14577887786432     11 1 2


Q ss_pred             CCceeEEEEeCCCCCCCCCC-cCCc----hHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~-~~L~----t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      .++||+|++|.+.+....+. .++.    ...+++. +.+.|+|||.+++...      ..+.+..++..++..|..+..
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~------~~~~~~~~l~~l~~~~~~~~~  168 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVF------QGEEIDEYLNELRKLFEKVKV  168 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------cCccHHHHHHHHHhhhceEEE
Confidence            46799999987522110110 1111    1467887 7899999999998642      223345677888878876655


Q ss_pred             EE
Q 019699          248 YS  249 (337)
Q Consensus       248 ~~  249 (337)
                      +.
T Consensus       169 ~~  170 (188)
T TIGR00438       169 TK  170 (188)
T ss_pred             eC
Confidence            43

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.98  E-value=4.8e-09  Score=93.87  Aligned_cols=126  Identities=18%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEEEEe
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi~D  182 (337)
                      -+|+||||.|..+.++++..|...+.+||+....+..+.+.....    .-+++.++.+||..++...  +++.|-|.+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            789999999999999999888899999999999998887776543    2479999999999988653  4799999999


Q ss_pred             CCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       183 ~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      -+|||-...  -..|.+.+|++. +.++|+|||.+.+.+.      ..+.+..+.+.+.+.
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES  149 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence            999983211  136899999998 8999999999988753      456677777777764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.98  E-value=5.5e-09  Score=98.52  Aligned_cols=124  Identities=16%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      .+.++||++-+=+|+++..+++ .+..+|+.||++...++.+++++..++  ++..+++++.+|+++|+++  ..++||+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            4578999999999999998887 457799999999999999999998874  4457899999999999875  3579999


Q ss_pred             EEEeCCCCCCCCCCcCCchHH---HHHHHhccccCCCceEEEeCCCCCcCCChhHHHH
Q 019699          179 IIGDLADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC  233 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~e---f~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~  233 (337)
                      ||+|+|.-.. +. ..+ .+.   ..+. +.+.|+|||++++-+.++.  ...+.+.+
T Consensus       199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~  250 (286)
T PF10672_consen  199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLE  250 (286)
T ss_dssp             EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHH
T ss_pred             EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHH
Confidence            9999984221 11 111 222   3444 4689999999887665552  34444433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.97  E-value=4.4e-08  Score=91.64  Aligned_cols=135  Identities=15%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.+||++|+|.|+.+..+++.. +...|+++|+++..++.+++++....    -.+++++..|+..+.. ..+.||+|
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~V  144 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAI  144 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEE
Confidence            445789999999999998887753 23589999999999999999986542    2469999999987643 23569999


Q ss_pred             EEeCCCCCC----CCCCc-------CC-----chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          180 IGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       180 i~D~~dp~~----~~p~~-------~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      ++|++-...    ..|..       .+     ...++++. +.+.|+|||+++..+.+    ..++.-..+++.+.+.++
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs----~~~~Ene~vv~~~l~~~~  219 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCS----LEPEENEAVVDYLLEKRP  219 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC----CChHHHHHHHHHHHHhCC
Confidence            999872211    01110       00     23457777 68899999999866533    234444556666666666


Q ss_pred             ce
Q 019699          244 YV  245 (337)
Q Consensus       244 ~v  245 (337)
                      ..
T Consensus       220 ~~  221 (264)
T TIGR00446       220 DV  221 (264)
T ss_pred             Cc
Confidence            53

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.97  E-value=3.1e-09  Score=102.11  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +..+||+||||+|..+..+++.  ..+|++||+++++++.|+++.....   ...+++++.+|+.++- ...++||+|++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~  204 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS  204 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence            3468999999999999888764  4689999999999999998864321   1358999999987653 23578999998


Q ss_pred             eCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      -.. .... .      -.+|++. ++++|+|||.+++..
T Consensus       205 ~~vLeHv~-d------~~~~L~~-l~r~LkPGG~liist  235 (322)
T PLN02396        205 LEVIEHVA-N------PAEFCKS-LSALTIPNGATVLST  235 (322)
T ss_pred             hhHHHhcC-C------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            543 2221 1      2478998 899999999998875

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=1.6e-10  Score=91.37  Aligned_cols=99  Identities=19%  Similarity=0.196  Sum_probs=60.0

Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      |+||||+|.++..++++.+..+++++|+++.+++.|++.+..... ....++++...|..+.  ...++||+|++-..-.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence            799999999999999987789999999999999988888764320 0011333333332221  1125899999876533


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceE
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIF  215 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvl  215 (337)
                      +.      -...++++. +++.|+|||+|
T Consensus        78 ~l------~~~~~~l~~-~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HL------EDIEAVLRN-IYRLLKPGGIL   99 (99)
T ss_dssp             --------S-HHHHHHH-HTTT-TSS-EE
T ss_pred             hh------hhHHHHHHH-HHHHcCCCCCC
Confidence            21      123588998 89999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=7.7e-09  Score=91.25  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=87.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCc--eeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~--yDv  178 (337)
                      -+..++||+-+|+|+++.|++.+ +..+++.||.|.+.+.+.+++.....   ...+.+++..|+..+|+....+  ||+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccE
Confidence            46789999999999999999997 57899999999999999999976432   1478999999999999887666  999


Q ss_pred             EEEeCCCCCCCCCCcCCc--hHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~--t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++|+|...      .+.  ........-...|+|+|++++...
T Consensus       118 VflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         118 VFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             EEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            999997543      233  222222101578999999999864

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.96  E-value=3.2e-09  Score=99.78  Aligned_cols=106  Identities=20%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+..+||+||||.|+++..+++++ ..+|++|.++++-.+.+++......  + ..++++..+|.+++    +.+||.|
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l-~~~v~v~~~D~~~~----~~~fD~I  131 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--L-EDRVEVRLQDYRDL----PGKFDRI  131 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--S-SSTEEEEES-GGG-------S-SEE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--C-CCceEEEEeecccc----CCCCCEE
Confidence            3567899999999999999999987 4689999999999999999876432  2 36899999997654    3489998


Q ss_pred             EEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++=- ....  ++   -.-..||+. +.+.|+|||.++++.
T Consensus       132 vSi~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  132 VSIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EEESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred             EEEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            8753 2221  11   123589998 899999999999885

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.95  E-value=6.5e-09  Score=96.07  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||+||||+|.++..+.+.  ..+++++|+++.+++.|++...         ..+++.+|+... .-..++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~  108 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAW  108 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEE
Confidence            35689999999999999888775  3789999999999999988642         235778887653 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.+...      ..++++. +.+.|+|||.+++..
T Consensus       109 s~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        109 SNLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT  140 (251)
T ss_pred             ECchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence            9876443111      2467888 799999999998764

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.93  E-value=5.1e-09  Score=97.92  Aligned_cols=107  Identities=20%  Similarity=0.250  Sum_probs=79.9

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+..+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+..      .++++++.+|+.+. .-..++||+
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~  120 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDM  120 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEE
Confidence            33566899999999999999888765 46899999999999999987542      36899999997642 112468999


Q ss_pred             EEEe-CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D-~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++- .....   +..  -...+++. +.+.|+|||.+++..
T Consensus       121 V~s~~~l~h~---~~~--d~~~~l~~-i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        121 IYSRDAILHL---SYA--DKKKLFEK-CYKWLKPNGILLITD  156 (263)
T ss_pred             EEEhhhHHhC---CHH--HHHHHHHH-HHHHcCCCcEEEEEE
Confidence            9983 32221   100  12468888 799999999998753

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.93  E-value=7.2e-09  Score=93.71  Aligned_cols=127  Identities=22%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--H----hh-c
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----ES-R  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l----~~-~  172 (337)
                      .+..+||+||||+|.++..+++.. +..+|++||+++.           .    ..++++++.+|+.+.  +    .. .
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            456799999999999999998874 3468999999981           0    125689999998763  1    11 2


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCC-----chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      .+.||+|++|....+...+....     ...+.++. +.+.|+|||.+++-.     + ..+.+..++..++..|..+..
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV  187 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence            46899999997422211111000     12457787 789999999998853     1 223456677888889998876


Q ss_pred             EE
Q 019699          248 YS  249 (337)
Q Consensus       248 ~~  249 (337)
                      +.
T Consensus       188 ~K  189 (209)
T PRK11188        188 RK  189 (209)
T ss_pred             EC
Confidence            54

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.92  E-value=4.3e-09  Score=95.72  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ..++|||||||+|.++..+++..  .+|+++|++++.|+.|+.+-....     =.++.......+... ..++||+|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~-~~~~FDvV~c  130 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLAS-AGGQFDVVTC  130 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHh-cCCCccEEEE
Confidence            56899999999999999998863  899999999999999999865432     124455555555443 3489999987


Q ss_pred             eC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      -= -.+. ..|      ..|.+. |.++++|||++++..
T Consensus       131 mEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST  161 (243)
T COG2227         131 MEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST  161 (243)
T ss_pred             hhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence            52 2221 012      358888 799999999998764

>PRK14968 putative methyltransferase; Provisional

Probab=98.92  E-value=2.5e-08  Score=87.38  Aligned_cols=111  Identities=21%  Similarity=0.235  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.++||++|||+|.++..+++.  ..+++++|+++++++.+++.+....  ..+.+++++.+|..+.+.  .++||+|+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL   95 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence            46678999999999999999987  4789999999999999999876432  223338899999876543  24799999


Q ss_pred             EeCCCCCCCCCCc----------------CCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCY----------------KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~----------------~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++++.... .+..                ......|++. +.++|+|+|.+++..
T Consensus        96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~  148 (188)
T PRK14968         96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQ  148 (188)
T ss_pred             ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEE
Confidence            98752110 1100                0112457888 789999999887765

>PHA03411 putative methyltransferase; Provisional

Probab=98.92  E-value=1.6e-08  Score=94.49  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=80.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ...+||++|||+|.++..++++.+..+|++||+|+.+++.|++.+         ++++++.+|++++..  .++||+|++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs  132 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS  132 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence            357999999999999998888654579999999999999998853         468899999998863  368999999


Q ss_pred             eCCCCCCCCCC--cC--Cc-----------hHHHHHHHhccccCCCceEEE-eCCCC
Q 019699          182 DLADPIEGGPC--YK--LY-----------TKSFYEFVVKPRLNPEGIFVT-QAGPA  222 (337)
Q Consensus       182 D~~dp~~~~p~--~~--L~-----------t~ef~~~~~~~~L~p~Gvlv~-~~~~p  222 (337)
                      +++-... .+.  ..  -+           -..|+.. +...|+|+|.+.+ ..+.|
T Consensus       133 NPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~yss~~  187 (279)
T PHA03411        133 NPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFAYSGRP  187 (279)
T ss_pred             cCCcccc-CchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEEEeccc
Confidence            9973221 000  01  11           2467777 6889999996543 33434

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.91  E-value=2e-08  Score=89.47  Aligned_cols=107  Identities=18%  Similarity=0.087  Sum_probs=81.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv  178 (337)
                      ..++||++++|+|.++.+++.+. ..+|++||+|+..++.+++++..+.  + ..+++++.+|+.++++..   ...||+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~--~-~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLK--S-GEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhC--C-cccEEEEehhHHHHHHHhhccCCCceE
Confidence            46899999999999999999974 5689999999999999999987653  1 247999999999988642   234899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~  219 (337)
                      |+.|++...      .+ ..+.+..+. ...|+++|++++..
T Consensus       125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence            999987432      11 233344311 35799999999875

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=3.2e-08  Score=98.80  Aligned_cols=136  Identities=16%  Similarity=0.110  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||++|+|.|+.+..++... +..+|+++|+++..++.+++++...+    -.+++++.+|+..+-....++||.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~  310 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDR  310 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCE
Confidence            3456799999999999998888763 35689999999999999999876432    235899999998764333467999


Q ss_pred             EEEeCCCCCCCCCC----cC-----------C--chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          179 IIGDLADPIEGGPC----YK-----------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       179 Ii~D~~dp~~~~p~----~~-----------L--~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      |++|++-... |..    ..           +  ...+.+.. +.+.|+|||.++..+.+.    .++....+++.+-+.
T Consensus       311 Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~----~~eEne~vv~~fl~~  384 (431)
T PRK14903        311 ILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV----TKEENTEVVKRFVYE  384 (431)
T ss_pred             EEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC----ChhhCHHHHHHHHHh
Confidence            9999873211 110    00           0  23556777 689999999988765432    333344455544444


Q ss_pred             cCce
Q 019699          242 FKYV  245 (337)
Q Consensus       242 F~~v  245 (337)
                      +|..
T Consensus       385 ~~~~  388 (431)
T PRK14903        385 QKDA  388 (431)
T ss_pred             CCCc
Confidence            5554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=4.7e-08  Score=97.59  Aligned_cols=115  Identities=20%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ..+..+||++|+|+|+.+..+++..+..+|+++|+++..++.+++++...+     -+++++.+|+.+.... ..++||.
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCE
Confidence            345679999999999999999987544699999999999999999886532     2468999999764321 2367999


Q ss_pred             EEEeCCCCCC----CCCCcCC------------chHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIE----GGPCYKL------------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~----~~p~~~L------------~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++|++-...    ..|....            ...++++. +.+.|+|||.++..+.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystc  373 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATC  373 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeC
Confidence            9999973210    0111000            11357887 7899999999987654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.91  E-value=4.6e-09  Score=94.97  Aligned_cols=114  Identities=23%  Similarity=0.281  Sum_probs=79.9

Q ss_pred             hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      ..+..++-++   ...+..+||+||+|+|..+.-+++.- +..+|+.||+++.+++.|++.+....    -.+++++.+|
T Consensus        59 ~~~a~~l~~L---~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gd  131 (209)
T PF01135_consen   59 SMVARMLEAL---DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGD  131 (209)
T ss_dssp             HHHHHHHHHT---TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-
T ss_pred             HHHHHHHHHH---hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcc
Confidence            3455555432   23566899999999999988777652 34579999999999999999987532    3489999999


Q ss_pred             HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +..-+.. ...||.|++...-+.  -|      ..     +.+.|++||++++-.+
T Consensus       132 g~~g~~~-~apfD~I~v~~a~~~--ip------~~-----l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  132 GSEGWPE-EAPFDRIIVTAAVPE--IP------EA-----LLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GGGTTGG-G-SEEEEEESSBBSS----------HH-----HHHTEEEEEEEEEEES
T ss_pred             hhhcccc-CCCcCEEEEeeccch--HH------HH-----HHHhcCCCcEEEEEEc
Confidence            9876544 357999999986432  23      12     3456999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.90  E-value=1.1e-08  Score=96.91  Aligned_cols=135  Identities=19%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.++||++|||+|.++..+++. +..+|+++||||..++.|+++...|+  .. .++++..  ..+.   ...+||+|+
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~--~~-~~~~v~~--~~~~---~~~~~dlvv  230 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG--VE-DRIEVSL--SEDL---VEGKFDLVV  230 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT---T-TCEEESC--TSCT---CCS-EEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC--CC-eeEEEEE--eccc---ccccCCEEE
Confidence            45689999999999999999986 57899999999999999999988764  22 3666531  1111   238899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG  260 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~  260 (337)
                      .+...+       .|  .+.... +.++|+|||.+++..     ... +....+.+.+++-|..+..-      ..+.|.
T Consensus       231 ANI~~~-------vL--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~g~~~~~~~------~~~~W~  288 (295)
T PF06325_consen  231 ANILAD-------VL--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQGFELVEER------EEGEWV  288 (295)
T ss_dssp             EES-HH-------HH--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHTTEEEEEEE------EETTEE
T ss_pred             ECCCHH-------HH--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHCCCEEEEEE------EECCEE
Confidence            998621       11  244555 678999999999853     222 23456666665533322211      135688


Q ss_pred             EEEEec
Q 019699          261 WIMASD  266 (337)
Q Consensus       261 ~~~as~  266 (337)
                      -+++.|
T Consensus       289 ~l~~~K  294 (295)
T PF06325_consen  289 ALVFKK  294 (295)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.90  E-value=3.3e-08  Score=87.67  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        98 ~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      +..+.-.++|++|||.|.++..|+.+.  .+++++|+++..++.||+.+..      -++++++..|.-++.  ..++||
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FD  108 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFD  108 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EE
T ss_pred             cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCee
Confidence            345566899999999999999999874  6899999999999999998753      278999999987775  357899


Q ss_pred             EEEEeCCCCCCCCCCcCCch----HHHHHHHhccccCCCceEEEeCCCC---CcCCChhHHHHHHHHHhhhcCceeEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPA---GIFSHTEVFSCIYNTLRQVFKYVVPYSA  250 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~~p---~~~~~~~~~~~i~~~l~~vF~~v~~~~~  250 (337)
                      +|++.--       ...|..    ..+.+. +.++|+|||.+++-.-..   ..|.+..-.+.+...|.+.|..|.-...
T Consensus       109 LIV~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~  180 (201)
T PF05401_consen  109 LIVLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC  180 (201)
T ss_dssp             EEEEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred             EEEEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence            9998732       122222    235666 678999999998732100   0144555567788888888888766554


Q ss_pred             e
Q 019699          251 H  251 (337)
Q Consensus       251 ~  251 (337)
                      .
T Consensus       181 ~  181 (201)
T PF05401_consen  181 R  181 (201)
T ss_dssp             E
T ss_pred             c
Confidence            3

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.89  E-value=1.5e-08  Score=94.75  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ....+||+||+|+|..+..+++.. +..+|++||+++.+++.|+++.....    -++++++.+|..+ +....+.||+|
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~-l~~~~~~fD~V  150 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEA-LPVADNSVDVI  150 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhh-CCCCCCceeEE
Confidence            456899999999998887776653 34589999999999999999865431    2588999999754 33234689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +++..-..  .+    -....++. +.+.|+|||.+++.
T Consensus       151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~  182 (272)
T PRK11873        151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS  182 (272)
T ss_pred             EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence            98864222  11    12467888 79999999998874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.89  E-value=1e-08  Score=91.54  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||++|||+|..+..++++  ..+|+++|+++.+++.+++......     -++++...|...+  ..+++||+|+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~~~~fD~I~   99 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--ALNEDYDFIF   99 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cccCCCCEEE
Confidence            35689999999999999999986  3689999999999999988764321     1367777776432  1236799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      +...-..  .+  .-...++++. ++++|+|||.++
T Consensus       100 ~~~~~~~--~~--~~~~~~~l~~-~~~~LkpgG~ll  130 (195)
T TIGR00477       100 STVVFMF--LQ--AGRVPEIIAN-MQAHTRPGGYNL  130 (195)
T ss_pred             Eeccccc--CC--HHHHHHHHHH-HHHHhCCCcEEE
Confidence            8754221  11  0123468888 799999999744

Part of a tellurite-reducing operon tehA and tehB

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=7.1e-08  Score=96.48  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~  175 (337)
                      ..+..+||++|+|.|+.+..+++.. +..+|+++|+++..++.+++++...+    -.+++++.+|+.++...   ..++
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~  325 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGY  325 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhccccccccccc
Confidence            3456899999999999999888753 34689999999999999999886432    13599999999876421   2368


Q ss_pred             eeEEEEeCCC-CCC---CCCCcC--C----------chHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLAD-PIE---GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~d-p~~---~~p~~~--L----------~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||.|++|++- ...   ..|...  .          ...++++. +.+.|+|||.++..+
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvyst  384 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYAT  384 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            9999999872 110   011100  0          02567888 789999999988665

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=4.1e-08  Score=98.45  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||++|+|+|+.+..++++. ...+|+++|+++..++.+++++...+  +  .+++++.+|+..+..  ..+||+|
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~--~~v~~~~~Da~~~~~--~~~fD~V  322 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG--I--TIIETIEGDARSFSP--EEQPDAI  322 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC--C--CeEEEEeCccccccc--CCCCCEE
Confidence            455799999999999888877653 34589999999999999999886432  2  368999999988752  4679999


Q ss_pred             EEeCCCCCCC----CCCc--CC----------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          180 IGDLADPIEG----GPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       180 i~D~~dp~~~----~p~~--~L----------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      ++|++-...+    .|..  .+          ...++++. +.+.|+|||+++..+.+.    .++.-..+++.+-+..+
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~----~~~Ene~~v~~~l~~~~  397 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI----EPEENELQIEAFLQRHP  397 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhHHHHHHHHHHhCC
Confidence            9998621110    1110  11          12357887 789999999999876543    23333444444444444


Q ss_pred             c
Q 019699          244 Y  244 (337)
Q Consensus       244 ~  244 (337)
                      .
T Consensus       398 ~  398 (445)
T PRK14904        398 E  398 (445)
T ss_pred             C
Confidence            3

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.9e-08  Score=94.96  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++|||+|||+|.++..+++. +..+|.++||||..+++|+++...|...   +..+.-..+......  .++||+|+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~---~~~~~~~~~~~~~~~--~~~~DvIV  234 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVE---LLVQAKGFLLLEVPE--NGPFDVIV  234 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCc---hhhhcccccchhhcc--cCcccEEE
Confidence            47899999999999999999986 5789999999999999999998876421   122333333333332  26899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh-hcCceeEEEeeccccCCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPYSAHIPSFADTW  259 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~-vF~~v~~~~~~vP~~~~~~  259 (337)
                      .+.-.    .|.     ..+... ++++|+|||.+++..     ... +....+...+.+ -|..+....      .+.|
T Consensus       235 ANILA----~vl-----~~La~~-~~~~lkpgg~lIlSG-----Il~-~q~~~V~~a~~~~gf~v~~~~~------~~eW  292 (300)
T COG2264         235 ANILA----EVL-----VELAPD-IKRLLKPGGRLILSG-----ILE-DQAESVAEAYEQAGFEVVEVLE------REEW  292 (300)
T ss_pred             ehhhH----HHH-----HHHHHH-HHHHcCCCceEEEEe-----ehH-hHHHHHHHHHHhCCCeEeEEEe------cCCE
Confidence            99741    221     255666 688999999998764     222 235566677743 466544322      2457


Q ss_pred             EEEEEe
Q 019699          260 GWIMAS  265 (337)
Q Consensus       260 ~~~~as  265 (337)
                      .-+.+-
T Consensus       293 ~~i~~k  298 (300)
T COG2264         293 VAIVGK  298 (300)
T ss_pred             EEEEEE
Confidence            655443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.87  E-value=1.8e-08  Score=91.48  Aligned_cols=108  Identities=19%  Similarity=0.138  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||+||||+|..+..++++.+ ..+++++|+++.+++.+++.+....   .+++++++.+|..+.. ...+.||+
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~  124 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDA  124 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccE
Confidence            34568999999999999999988754 5899999999999999999875421   2467899999987643 23468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++...-..  .+    ...++++. +.+.|+|||.+++-
T Consensus       125 I~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~li~~  157 (239)
T PRK00216        125 VTIAFGLRN--VP----DIDKALRE-MYRVLKPGGRLVIL  157 (239)
T ss_pred             EEEeccccc--CC----CHHHHHHH-HHHhccCCcEEEEE
Confidence            988654221  11    13578888 79999999987653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.86  E-value=2.4e-08  Score=89.73  Aligned_cols=105  Identities=19%  Similarity=0.154  Sum_probs=81.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+.+||++|||.|..+..+++..+. .+++++|+++.+++.+++.+.      ..++++++.+|..+.. ...++||+
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~-~~~~~~D~  109 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALP-FEDNSFDA  109 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCC-CCCCcEEE
Confidence            446789999999999999999887654 589999999999999998765      1467899999987753 23468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++......  .+    ....+++. +++.|+|||.+++.
T Consensus       110 i~~~~~~~~--~~----~~~~~l~~-~~~~L~~gG~l~~~  142 (223)
T TIGR01934       110 VTIAFGLRN--VT----DIQKALRE-MYRVLKPGGRLVIL  142 (223)
T ss_pred             EEEeeeeCC--cc----cHHHHHHH-HHHHcCCCcEEEEE
Confidence            988654221  11    13468888 79999999988764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.86  E-value=2.1e-08  Score=87.31  Aligned_cols=102  Identities=17%  Similarity=0.223  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||+|.|.++.+++++  ..++++||+|+.+++.+++.+..      .++++++.+|+.++... ...||+|+
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~~-~~~~d~vi   82 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDLP-KLQPYKVV   82 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCcc-ccCCCEEE
Confidence            44578999999999999999987  47899999999999999988742      36899999999887432 24699999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~~  220 (337)
                      +|++-.        ..+ +.+..++.. .+.++|++++|..
T Consensus        83 ~n~Py~--------~~~-~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       83 GNLPYN--------IST-PILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             ECCCcc--------cHH-HHHHHHHhcCCCcceEEEEEEHH
Confidence            997532        222 333332432 3558999999864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.85  E-value=2.2e-08  Score=96.52  Aligned_cols=111  Identities=21%  Similarity=0.054  Sum_probs=82.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||++|||+|+++.+++..  ..+++++|+|+.+++.|++++....    -+.++++.+|+.+. ....+.||+|+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv  253 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA  253 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence            45678999999999999987764  4789999999999999999876432    12388999998763 33357899999


Q ss_pred             EeCCCCCCCCCCcCC---chHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++-..........   .-.++++. +++.|+|||.+++..
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV  294 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence            998743321111111   13578888 799999999888765

This family is found exclusively in the Archaea.

>PHA03412 putative methyltransferase; Provisional

Probab=98.85  E-value=2.4e-08  Score=91.40  Aligned_cols=103  Identities=12%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC---CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+||++|+|+|.++..+++..   +..+|++||||+.+++.|+++.         ++++++.+|...+.  ...+||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence            46799999999999999888752   2468999999999999999763         35789999987643  2468999


Q ss_pred             EEEeCCCCCCCCC------CcCCchHHHHHHHhccccCCCceEEE
Q 019699          179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       179 Ii~D~~dp~~~~p------~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ||++++-......      ...+....|++. +.+ |.+.|.+++
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~-Ll~~G~~IL  160 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQ-IARQGTFII  160 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHH-HHH-HcCCCEEEe
Confidence            9999983211100      012344567777 566 555555554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.85  E-value=1.9e-08  Score=97.13  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||||+|.++..++++.+..+++++|+++++++.|++...       .++++++.+|+.+. .-..+.||+|+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVI  183 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYV  183 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEE
Confidence            34579999999999999888887556799999999999999998653       24688999998653 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  .+    -....+++ +.+.|+|||.+++-
T Consensus       184 s~~~L~~--~~----d~~~~L~e-~~rvLkPGG~LvIi  214 (340)
T PLN02490        184 SAGSIEY--WP----DPQRGIKE-AYRVLKIGGKACLI  214 (340)
T ss_pred             EcChhhh--CC----CHHHHHHH-HHHhcCCCcEEEEE
Confidence            8653221  11    12357788 79999999998763

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.84  E-value=1.7e-08  Score=94.56  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+..+||+||||.|+++..+++++ ..+|++|.++++..+.+++-+...+  + ..+++++..|-+++    .++||-|
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l-~~~v~v~l~d~rd~----~e~fDrI  141 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--L-EDNVEVRLQDYRDF----EEPFDRI  141 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--C-CcccEEEecccccc----cccccee
Confidence            4677999999999999999999988 5799999999999999999765432  2 25899999997665    3459999


Q ss_pred             EEe-CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D-~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++= .+...  ++   =.-..||+. +++.|+|||.+++++
T Consensus       142 vSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~  176 (283)
T COG2230         142 VSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS  176 (283)
T ss_pred             eehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence            874 34333  22   123579998 899999999999886

>PRK08317 hypothetical protein; Provisional

Probab=98.84  E-value=2.7e-08  Score=89.99  Aligned_cols=106  Identities=23%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+.+||++|||+|..+..++++. +..+++++|+++..++.+++....     ..++++++.+|....- -..++||+
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~   90 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDA   90 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceE
Confidence            3566899999999999999998875 567999999999999999987322     2467899999876532 23468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++...-.....      ...+++. +.++|+|||.+++.
T Consensus        91 v~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~  123 (241)
T PRK08317         91 VRSDRVLQHLED------PARALAE-IARVLRPGGRVVVL  123 (241)
T ss_pred             EEEechhhccCC------HHHHHHH-HHHHhcCCcEEEEE
Confidence            998764221101      2467888 79999999988764

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.84  E-value=3.1e-08  Score=76.08  Aligned_cols=103  Identities=23%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~  184 (337)
                      +++++|+|.|..+..+++ ....+++++|+++..++.+++.....    ..++.+++.+|..++......+||+|+++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence            589999999999999988 45689999999999999998532211    2468999999998886534578999999876


Q ss_pred             CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       185 dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ....     .-....+++. +.+.|+++|.+++.
T Consensus        76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence            3210     1133567777 78899999998764

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.84  E-value=2.7e-08  Score=100.38  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..++++. ..+|+++|+++.+++.|++....     ...+++++.+|..... -..++||+|+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~  337 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY  337 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence            456799999999999999988876 46899999999999999886532     1357999999976532 1246899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  -+    -...+++. +++.|+|||.+++..
T Consensus       338 s~~~l~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~  369 (475)
T PLN02336        338 SRDTILH--IQ----DKPALFRS-FFKWLKPGGKVLISD  369 (475)
T ss_pred             ECCcccc--cC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            8644211  01    12478888 899999999988753

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.82  E-value=2.3e-08  Score=94.64  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|..+..+++.  ..+|++||+++.+++.+++.....     .-++++...|....-  .+++||+|+
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~~~~fD~I~  189 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--IQEEYDFIL  189 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--ccCCccEEE
Confidence            45679999999999999999885  368999999999999999876543     236888888875532  257899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +...-... .+  . ....+++. +.++|+|||.+++
T Consensus       190 ~~~vl~~l-~~--~-~~~~~l~~-~~~~LkpgG~~l~  221 (287)
T PRK12335        190 STVVLMFL-NR--E-RIPAIIKN-MQEHTNPGGYNLI  221 (287)
T ss_pred             EcchhhhC-CH--H-HHHHHHHH-HHHhcCCCcEEEE
Confidence            87642210 00  0 12467888 7999999998544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.81  E-value=2.7e-08  Score=89.75  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .....+||+||+|+|..+..+++..  .++++||+++++++.|++++....    -.+++++.+|+.+.+.. .++||+|
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~fD~I  148 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWPA-YAPFDRI  148 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCCc-CCCcCEE
Confidence            3456899999999999988776653  489999999999999999886432    24589999998654332 3689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +++...+.       +     -+. +.+.|+|||.+++..+
T Consensus       149 ~~~~~~~~-------~-----~~~-l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPE-------I-----PRA-LLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchh-------h-----hHH-HHHhcCCCcEEEEEEc
Confidence            99864221       1     133 4678999999988754

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.80  E-value=9e-08  Score=87.52  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=94.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi  180 (337)
                      ..-+|+||+|.|....++++..|...+.+||+-..++..|.+......    -++++++..||.+++...  +++.|-|.
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            357999999999999999999888999999999999998888765431    238999999999998774  34899999


Q ss_pred             EeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.-+|||--...  ..|...+|++. +++.|+|||.+-+.+
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT  164 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT  164 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence            999999932211  35899999998 899999999998875

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.80  E-value=1.6e-07  Score=93.79  Aligned_cols=137  Identities=20%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDv  178 (337)
                      ..+..+||++|+|.|+.+..+++..+..+|+++|+++..++.+++++...+  +. -++++..+|+..... ...++||.
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDR  312 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCE
Confidence            345689999999999999999886555799999999999999999886432  11 234446667653221 12467999


Q ss_pred             EEEeCCC-CCC---CCCCcC--C----------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          179 IIGDLAD-PIE---GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       179 Ii~D~~d-p~~---~~p~~~--L----------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      |++|++- ...   ..|...  .          ...++++. +.+.|+|||.++..+.+-    .++.-..+++.+-+.+
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~----~~~Ene~~v~~~l~~~  387 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV----LPEENSEQIKAFLQEH  387 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhCHHHHHHHHHhC
Confidence            9999862 210   011100  0          12568888 789999999999776432    2333334445544455


Q ss_pred             Cc
Q 019699          243 KY  244 (337)
Q Consensus       243 ~~  244 (337)
                      |.
T Consensus       388 ~~  389 (426)
T TIGR00563       388 PD  389 (426)
T ss_pred             CC
Confidence            54

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.79  E-value=4.6e-08  Score=94.02  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||+||+|+|.++..+++..+ ..+|++||+++++++.|++.+....    -++++++.+|+.+.+... ..||+|
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~~-~~fD~I  153 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPEF-APYDVI  153 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhccccc-CCccEE
Confidence            4567999999999999999888654 2479999999999999999876432    257999999988765433 579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++...+.            .... +.+.|+|||.+++..
T Consensus       154 i~~~g~~~------------ip~~-~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        154 FVTVGVDE------------VPET-WFTQLKEGGRVIVPI  180 (322)
T ss_pred             EECCchHH------------hHHH-HHHhcCCCCEEEEEe
Confidence            99854221            1122 356899999988764

>PRK06922 hypothetical protein; Provisional

Probab=98.79  E-value=4.1e-08  Score=101.12  Aligned_cols=112  Identities=21%  Similarity=0.166  Sum_probs=82.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvIi  180 (337)
                      .+.+||+||||+|..+..+++..+..+++++|+++.+++.|++.....     ..+++++.+|+.+.-. -.+++||+|+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence            568999999999999988888767789999999999999999875432     3578889999876321 1346899999


Q ss_pred             EeCCCCC-------CCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPI-------EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~-------~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-++       .......-....+++. +.++|+|||.+++..
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D  537 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD  537 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            8753211       0000001123578888 799999999998864

>PTZ00146 fibrillarin; Provisional

Probab=98.79  E-value=1.9e-07  Score=88.05  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~yD  177 (337)
                      .+..+||++|||+|.++..+++.- +..+|.+||+++++.+-..+...      ..+++..+.+|++.-  .....+.+|
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD  204 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD  204 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence            455799999999999999999874 24589999999875533222111      125788999998642  111235799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--C-hhHHHHHHHHHhhh-cCceeEEEeecc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--H-TEVFSCIYNTLRQV-FKYVVPYSAHIP  253 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~-~~~~~~i~~~l~~v-F~~v~~~~~~vP  253 (337)
                      +|++|...|+  .      ...+..+ +++.|+|+|.|++-+.......  . .+.+++-.+.|++. |..+...  .++
T Consensus       205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v--~L~  273 (293)
T PTZ00146        205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL--TLE  273 (293)
T ss_pred             EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE--ecC
Confidence            9999996543  1      1234455 6889999999887432111111  1 22344445778877 8765543  345


Q ss_pred             ccCCceEEEEEecCC
Q 019699          254 SFADTWGWIMASDSP  268 (337)
Q Consensus       254 ~~~~~~~~~~as~~p  268 (337)
                      .|.....++++..++
T Consensus       274 Py~~~h~~v~~~~~~  288 (293)
T PTZ00146        274 PFERDHAVVIGVYRP  288 (293)
T ss_pred             CccCCcEEEEEEEcC
Confidence            554445566665443

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.78  E-value=1.9e-07  Score=84.46  Aligned_cols=149  Identities=17%  Similarity=0.215  Sum_probs=104.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      -+|+++|+||.-+|..+..++. .++..+|+++|+|++..+++.++.....   -+.+++++++++.+-|.+.     .+
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence            4789999999999988765554 4778899999999999999977655432   3578999999998877552     57


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC----C---CCCcCCChhHHHHH---HHHHhhhcCc
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----G---PAGIFSHTEVFSCI---YNTLRQVFKY  244 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~----~---~p~~~~~~~~~~~i---~~~l~~vF~~  244 (337)
                      +||.+|+|..-        ..|. .+|.. +-+.|++||++++.-    |   .|. ......-..+   ++.-+.....
T Consensus       149 tfDfaFvDadK--------~nY~-~y~e~-~l~Llr~GGvi~~DNvl~~G~v~~p~-~~~~~~~~~~r~~~~~n~~l~~D  217 (237)
T KOG1663|consen  149 TFDFAFVDADK--------DNYS-NYYER-LLRLLRVGGVIVVDNVLWPGVVADPD-VNTPVRGRSIREALNLNKKLARD  217 (237)
T ss_pred             ceeEEEEccch--------HHHH-HHHHH-HHhhcccccEEEEeccccCCcccCcc-cCCCcchhhhhhhhhhhhHhccC
Confidence            89999999752        3344 78888 678999999998742    2   221 1111111222   2444455666


Q ss_pred             eeEEEeeccccCCceEEEEEec
Q 019699          245 VVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       245 v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      .+.|...+|.++|   ..+|.+
T Consensus       218 ~rV~~s~~~igdG---~~i~~k  236 (237)
T KOG1663|consen  218 PRVYISLLPIGDG---ITICRK  236 (237)
T ss_pred             cceeeEeeeccCc---eeeecc
Confidence            7777777787655   345544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.76  E-value=5.8e-08  Score=88.58  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=80.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ...+||+||||+|.++..+.+.  ..+++++|+++.+++.+++.+...     ..+++++..|..++.....++||+|++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEHPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhcCCCccEEEE
Confidence            4679999999999999988885  368999999999999999887543     235788889988876555578999998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ...-..  .+    ...++++. +.+.|+|||.+++..
T Consensus       121 ~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~v~~  151 (233)
T PRK05134        121 MEMLEH--VP----DPASFVRA-CAKLVKPGGLVFFST  151 (233)
T ss_pred             hhHhhc--cC----CHHHHHHH-HHHHcCCCcEEEEEe
Confidence            653221  11    12467787 799999999988764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.76  E-value=4.9e-08  Score=96.06  Aligned_cols=101  Identities=23%  Similarity=0.373  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..++++.+ .+|+++|+++++++.|++...       +..+++...|..+.    .++||+|+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv  233 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV  233 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence            4567999999999999999998764 689999999999999998753       12478888887653    46899998


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +-.. ...  +.   -.-..+++. +.++|+|||.++++.
T Consensus       234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~  267 (383)
T PRK11705        234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT  267 (383)
T ss_pred             EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            7542 211  11   112478898 899999999998864

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.75  E-value=7.7e-08  Score=92.58  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+++||+||||+|..+..+++.. ...|++||+++.++..++..-....   .+++++++.+|..+. .. .++||+|+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~  194 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF  194 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence            356899999999999999999874 4579999999988864332111110   146899999987654 32 57899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-..-.....      ...+++. +++.|+|||.+++.
T Consensus       195 s~~vl~H~~d------p~~~L~~-l~~~LkpGG~lvl~  225 (322)
T PRK15068        195 SMGVLYHRRS------PLDHLKQ-LKDQLVPGGELVLE  225 (322)
T ss_pred             ECChhhccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence            8543111011      2468888 89999999999875

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.74  E-value=6e-08  Score=92.44  Aligned_cols=106  Identities=12%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++.+++++.|..+++++|+ |.+++.++++.....   -.+|++++.+|..+.  .. ..+|+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~--~~-~~~D~v~  220 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE--SY-PEADAVL  220 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC--CC-CCCCEEE
Confidence            4558999999999999999999877789999998 789999998875432   246899999997642  12 3479987


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-... .+   -.....++. +.+.|+|||.+++.
T Consensus       221 ~~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~  253 (306)
T TIGR02716       221 FCRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL  253 (306)
T ss_pred             eEhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence            65431110 11   112457888 79999999988765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.73  E-value=6.2e-08  Score=90.86  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC---cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV---EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~---~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ....+||+||||+|..+..+++..+.   .+++++|+++.+++.|++..         +++++.++|+.+. .-..++||
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD  153 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLD  153 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCcee
Confidence            34578999999999999998875332   37999999999999998742         5678899997653 22347899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++-..      |       .+++. ++++|+|||.+++-.
T Consensus       154 ~I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~  181 (272)
T PRK11088        154 AIIRIYA------P-------CKAEE-LARVVKPGGIVITVT  181 (272)
T ss_pred             EEEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence            9996432      2       12355 678899999998764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.72  E-value=9.3e-08  Score=86.46  Aligned_cols=106  Identities=19%  Similarity=0.164  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||+||||+|.++..+++..  .+++++|+++.+++.+++.+....    ..++++..+|+.++.....++||+|+
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~  117 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVT  117 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence            347899999999999999888753  469999999999999998876431    12688999999888655457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.....      ...+++. +.+.|++||.+++..
T Consensus       118 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       118 CMEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST  149 (224)
T ss_pred             ehhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence            8643211111      2467888 799999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=8.3e-08  Score=87.19  Aligned_cols=110  Identities=19%  Similarity=0.299  Sum_probs=79.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC---C--------------------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE---A--------------------------  152 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~---~--------------------------  152 (337)
                      .++.+|+|||-.|.++..++++++...|.+||||+..|+.|+++......   .                          
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            57899999999999999999999889999999999999999998654210   0                          


Q ss_pred             ---------CCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC---CCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          153 ---------FSDPRLELVINDARAELESRKESYDVIIGDLADPIEG---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       153 ---------~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~---~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                               +...+..+-..   +||.....+||+|++=+-.-|-.   +- ..|  ..||+. +.++|.|||+|++.
T Consensus       138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD-~GL--~~ff~k-is~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGD-DGL--RRFFRK-ISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeEeccccc-HHH--HHHHHH-HHHhhCcCcEEEEc
Confidence                     00011112222   34444457899999876533310   00 122  579999 89999999999986

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.70  E-value=1.9e-07  Score=89.61  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+.+||++|||+|.++..++++  ..+|++||+++.+++.|+++...++    -++++++.+|+.++.....++||+|++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            4689999999999999999985  3789999999999999999876542    257999999999987644457999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      |++..   +.     ..+..+. + ..++|++++.+-+.+
T Consensus       247 dPPr~---G~-----~~~~~~~-l-~~~~~~~ivyvsc~p  276 (315)
T PRK03522        247 NPPRR---GI-----GKELCDY-L-SQMAPRFILYSSCNA  276 (315)
T ss_pred             CCCCC---Cc-----cHHHHHH-H-HHcCCCeEEEEECCc
Confidence            97621   21     1233343 3 347788888776643

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.69  E-value=1.2e-07  Score=93.17  Aligned_cols=100  Identities=23%  Similarity=0.278  Sum_probs=81.3

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      .+||++++|+|..+..+++..+..+|+++|+|+..++.+++++..+.    -.+++++.+|+..++.. .++||+|++|+
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP  133 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP  133 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence            58999999999999998876556799999999999999999987653    23567999999998864 46799999998


Q ss_pred             CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      + .   .+      .+|++. +-+.++++|++.+-+
T Consensus       134 ~-G---s~------~~~l~~-al~~~~~~gilyvSA  158 (382)
T PRK04338        134 F-G---SP------APFLDS-AIRSVKRGGLLCVTA  158 (382)
T ss_pred             C-C---Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence            6 1   22      367776 457789999988753

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.69  E-value=2.1e-07  Score=93.32  Aligned_cols=103  Identities=15%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      .+..+||++|||+|.++..+++..  .+|++||+++.+++.|++++..+.    -.+++++.+|+.+++..   ..++||
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD  369 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFD  369 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCC
Confidence            345799999999999999998863  689999999999999999876542    24699999999887743   235799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++|++-.   +.      .+..+. +. .|++++++.+.++
T Consensus       370 ~Vi~dPPr~---g~------~~~~~~-l~-~~~~~~ivyvSCn  401 (443)
T PRK13168        370 KVLLDPPRA---GA------AEVMQA-LA-KLGPKRIVYVSCN  401 (443)
T ss_pred             EEEECcCCc---Ch------HHHHHH-HH-hcCCCeEEEEEeC
Confidence            999998632   21      244455 44 3799998888764

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.69  E-value=1.7e-08  Score=92.76  Aligned_cols=102  Identities=19%  Similarity=0.334  Sum_probs=74.3

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCC---CeEEEEccHHHHHhhcCCceeEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~---rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++||++|||+|.+...+++..  ++|+++|+.+++|++|+++-... ..++.+   |+++...|+..    ..++||+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence            4789999999999999999863  89999999999999999993221 111111   56666666543    34569999


Q ss_pred             EEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-= ..+.. .|      .+|.+. +.++|+|+|.+++-.
T Consensus       163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEeee
Confidence            8753 22221 22      588887 899999999988753

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.68  E-value=1.3e-07  Score=85.14  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+++.+||+||||+|..+..+.+..+..++++||+++++++.|++++         ++++++.+|+.+.  ...++||+|
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V  109 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV  109 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence            45678999999999999999988755679999999999999999864         3567888887762  235789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhcccc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRL  209 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L  209 (337)
                      ++...-... .| .  .-..+++. +.+.+
T Consensus       110 ~~~~vL~hl-~p-~--~~~~~l~e-l~r~~  134 (204)
T TIGR03587       110 LTKGVLIHI-NP-D--NLPTAYRE-LYRCS  134 (204)
T ss_pred             EECChhhhC-CH-H--HHHHHHHH-HHhhc
Confidence            987642110 11 1  12356676 56666

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.68  E-value=4.9e-07  Score=90.32  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      .+..+||++|||.|.++..+++.  ..+|++||+++.+++.|++++..+.    -.+++++.+|+.+++...   ..+||
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence            44579999999999999999886  3689999999999999999987542    257999999999887542   35799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++|++..   +.     ..++++. +. .|+|++++.+.+
T Consensus       365 ~vi~dPPr~---G~-----~~~~l~~-l~-~l~~~~ivyvsc  396 (431)
T TIGR00479       365 VLLLDPPRK---GC-----AAEVLRT-II-ELKPERIVYVSC  396 (431)
T ss_pred             EEEECcCCC---CC-----CHHHHHH-HH-hcCCCEEEEEcC
Confidence            999998631   21     2466665 44 488999876654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.67  E-value=9.3e-08  Score=96.48  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~~~yDvI  179 (337)
                      .+.++||+||||+|..+..++++.  .+|++||+++.+++.+++....      .++++++.+|+... +.-..++||+|
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEE
Confidence            345799999999999999999863  6899999999999987763221      36789999998642 22234789999


Q ss_pred             EEeCCCCCCCCCCcCCc---hHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~---t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-.       ++.   ..++++. +++.|+|||.+++.
T Consensus       108 ~~~~~l~-------~l~~~~~~~~l~~-~~r~Lk~gG~l~~~  141 (475)
T PLN02336        108 FSNWLLM-------YLSDKEVENLAER-MVKWLKVGGYIFFR  141 (475)
T ss_pred             ehhhhHH-------hCCHHHHHHHHHH-HHHhcCCCeEEEEE
Confidence            9986422       222   2578888 79999999999874

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.67  E-value=3.9e-07  Score=89.50  Aligned_cols=102  Identities=10%  Similarity=0.136  Sum_probs=80.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+++||++|||+|.++.+++..  ..+|++||+|+..++.|+++...+.    -++++++.+|+.+++....++||+|++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            4579999999999999999864  3789999999999999999986543    137999999999988654356999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++..   |.     ..++.+. +. .++|++++.+.+
T Consensus       307 DPPr~---G~-----~~~~l~~-l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       307 NPPRR---GI-----GKELCDY-LS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCCC---CC-----cHHHHHH-HH-hcCCCeEEEEEe
Confidence            98631   21     2456665 43 589999888765

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00452 methyltransferase, putative

Probab=98.66  E-value=1.9e-07  Score=89.43  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHH---HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a---~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .+.++||+||||+|..+..+++.. ...|++||+++.++..+   +++..      .++++.+...|..+. .. ..+||
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l-p~-~~~FD  190 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL-HE-LYAFD  190 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-CC-CCCcC
Confidence            456899999999999998888764 46899999999988653   33321      246788888876543 22 35799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++...-.....|      .++++. +++.|+|||.+++..
T Consensus       191 ~V~s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet  225 (314)
T TIGR00452       191 TVFSMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET  225 (314)
T ss_pred             EEEEcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence            99987542211112      468888 899999999998763

Known examples to date are restricted to the proteobacteria.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.66  E-value=2.6e-07  Score=84.70  Aligned_cols=108  Identities=22%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC------cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~------~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~  174 (337)
                      .+..++|+++||+|-++..+++|-+.      .+|+++||+|.++..+++.-.. ..-..++++.++.+||.+. .-.+.
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence            44579999999999999999998655      7999999999999999987522 1223467899999998653 34457


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .||...+...--.  -+  +  -..-++. +.|.|||||.+.+
T Consensus       177 s~D~yTiafGIRN--~t--h--~~k~l~E-AYRVLKpGGrf~c  212 (296)
T KOG1540|consen  177 SFDAYTIAFGIRN--VT--H--IQKALRE-AYRVLKPGGRFSC  212 (296)
T ss_pred             cceeEEEecceec--CC--C--HHHHHHH-HHHhcCCCcEEEE
Confidence            8998877643111  01  1  1245666 7899999998864

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.66  E-value=1.7e-07  Score=91.77  Aligned_cols=101  Identities=22%  Similarity=0.196  Sum_probs=84.8

Q ss_pred             CCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +.+|||+.+|+|..+.++++. .+..+|+++|+|+..++.++++...+.    -.+++++.+|+..++....++||+|++
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            358999999999999999987 356899999999999999999987763    236899999999999876678999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++.    .|      .+|++. +-+.++++|++.+-
T Consensus       121 DPfG----s~------~~fld~-al~~~~~~glL~vT  146 (374)
T TIGR00308       121 DPFG----TP------APFVDS-AIQASAERGLLLVT  146 (374)
T ss_pred             CCCC----Cc------HHHHHH-HHHhcccCCEEEEE
Confidence            9852    22      268887 67889999988776

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.64  E-value=6e-08  Score=87.35  Aligned_cols=102  Identities=23%  Similarity=0.318  Sum_probs=71.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe-EEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv-~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...++|++|+|-|.++..++.+. ..+|++||..+..++.|++++...     .+++ +++..-..+|.. ...+||+|-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~v~~~~~~gLQ~f~P-~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-----NPRVGEFYCVGLQDFTP-EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-----GCCEEEEEES-GGG-----TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-----CCCcceEEecCHhhccC-CCCcEeEEE
Confidence            45899999999999999887654 589999999999999999987642     2455 455554455543 346899999


Q ss_pred             EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-..-       .+|..   .+|++. |++.|+|+|++++-
T Consensus       128 ~QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK  160 (218)
T PF05891_consen  128 IQWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK  160 (218)
T ss_dssp             EES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ehHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence            98642       35544   468999 79999999999984

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03438 probable methyltransferase

Probab=98.61  E-value=3.2e-07  Score=87.48  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC----c
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~----~  175 (337)
                      +.+.+||++|||+|..++.+++... ..++++||+++++++.|++.+...   +..-+++.+.+|..+.+.-...    .
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~  138 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR  138 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence            4568999999999999999998743 468999999999999998876531   1123466688998764422211    2


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..+++++++-...  +  .--...|++. ++++|+|||.+++-.
T Consensus       139 ~~~~~~gs~~~~~--~--~~e~~~~L~~-i~~~L~pgG~~lig~  177 (301)
T TIGR03438       139 RLGFFPGSTIGNF--T--PEEAVAFLRR-IRQLLGPGGGLLIGV  177 (301)
T ss_pred             eEEEEecccccCC--C--HHHHHHHHHH-HHHhcCCCCEEEEec
Confidence            3345555432210  1  1113468998 899999999998754

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.61  E-value=1.3e-07  Score=80.35  Aligned_cols=96  Identities=23%  Similarity=0.248  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.++||+||||.|.+++.+.+..  .+++++|+++.+++.  ..            +.....+... .....++||+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i   82 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI   82 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence            4678899999999999999997653  499999999999988  11            1111111111 12235789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  -+    .-..+++. ++++|+|||.+++..
T Consensus        83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~  115 (161)
T PF13489_consen   83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD  115 (161)
T ss_dssp             EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred             hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence            99864221  11    23578898 899999999998875

...

>PRK05785 hypothetical protein; Provisional

Probab=98.61  E-value=5.6e-07  Score=82.34  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|.+++.+.+.. ..+|++||+++++++.|++.            ...+.+|+.+ +.-.+++||+|+
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~-lp~~d~sfD~v~  115 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEA-LPFRDKSFDVVM  115 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhh-CCCCCCCEEEEE
Confidence            347899999999999999998875 46899999999999999863            1245677754 333458899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G  213 (337)
                      +...-...  +    -....+++ ++++|+|.+
T Consensus       116 ~~~~l~~~--~----d~~~~l~e-~~RvLkp~~  141 (226)
T PRK05785        116 SSFALHAS--D----NIEKVIAE-FTRVSRKQV  141 (226)
T ss_pred             ecChhhcc--C----CHHHHHHH-HHHHhcCce
Confidence            97642211  1    12467787 789999943

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=4.6e-07  Score=79.72  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -+.+.|+|+|||+|.++..++.. +..+|.+||+||+.+++++++....     ..+++++++|..++    ..++|.+|
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi  113 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI  113 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence            45678999999999999888765 5689999999999999999987642     36899999997665    47899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++...  . ..+ -.++|+.. +.+.-  +.++.+.
T Consensus       114 mNPPFG~--~-~rh-aDr~Fl~~-Ale~s--~vVYsiH  144 (198)
T COG2263         114 MNPPFGS--Q-RRH-ADRPFLLK-ALEIS--DVVYSIH  144 (198)
T ss_pred             ECCCCcc--c-ccc-CCHHHHHH-HHHhh--heEEEee
Confidence            9997433  1 123 56788876 43322  4555554

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.61  E-value=8.4e-08  Score=87.17  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ++.-+-++++|+|+|.+++-++.|+  ++|+++|+++.++++|+++++..-   .+-..++...|...++.. +++-|+|
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g~-e~SVDlI  104 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLGG-EESVDLI  104 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccCC-Ccceeee
Confidence            4555689999999999999999996  789999999999999999986431   233344555555555532 5889999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc-eEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G-vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      ++--.-+|-       --.+||+. +++.|+++| +++++...-.....++...-+++...+-.|
T Consensus       105 ~~Aqa~HWF-------dle~fy~~-~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p  161 (261)
T KOG3010|consen  105 TAAQAVHWF-------DLERFYKE-AYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLP  161 (261)
T ss_pred             hhhhhHHhh-------chHHHHHH-HHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCc
Confidence            987554441       23589998 899999877 777765321112234444444444444444

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.61  E-value=1.8e-07  Score=84.82  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=74.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--------CCCCCCCeEEEEccHHHHHhhc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~d~rv~v~~~D~~~~l~~~  172 (337)
                      ++..+||++|||.|.-+..++++  .-+|++||+++..++.+.+......        ......+++++++|..++-...
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999986  3689999999999997543211100        0112457999999987763322


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .++||.|+--..-..  -| .. ....+++. +.+.|+|||.+++
T Consensus       111 ~~~fD~i~D~~~~~~--l~-~~-~R~~~~~~-l~~lLkpgG~~ll  150 (213)
T TIGR03840       111 LGPVDAVYDRAALIA--LP-EE-MRQRYAAH-LLALLPPGARQLL  150 (213)
T ss_pred             CCCcCEEEechhhcc--CC-HH-HHHHHHHH-HHHHcCCCCeEEE
Confidence            357998875433111  11 11 13457887 8999999996443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.58  E-value=5.4e-07  Score=81.58  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...++||+||||+|.++..+++.  ..+|+++|+++++++.|++.+....   ...++++..+|+.+.    .++||+|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii  124 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV  124 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence            45789999999999999999885  3589999999999999999876431   124799999997653    27899998


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +-.. ...   +...  -...++. +.+.+++++++.+
T Consensus       125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence            7432 211   1011  1346676 6777777666554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.57  E-value=1.8e-07  Score=83.26  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE-EEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~-v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....||++|||+|.--...- ..+..+||++|-++.|-+.+.+-+...    ..+++. ++++||++..+-.+.+||+|+
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence            34578999999998776532 236889999999999999999887654    246777 999999887655678999998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .-.--      +..---.+-+++ +++.|+|||++++--
T Consensus       151 ~TlvL------CSve~~~k~L~e-~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  151 CTLVL------CSVEDPVKQLNE-VRRLLRPGGRIIFIE  182 (252)
T ss_pred             EEEEE------eccCCHHHHHHH-HHHhcCCCcEEEEEe
Confidence            87631      111112466778 799999999887653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.56  E-value=3.3e-06  Score=82.56  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc----------
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----------  172 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~----------  172 (337)
                      +.+||+++||+|.++..+++.  ..+|++||+++.+++.|+++...++    -.+++++.+|+.++++..          
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence            357999999999999988875  3689999999999999999886653    247999999999988642          


Q ss_pred             -----CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       173 -----~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                           ..+||+|++|++.   .|.     ..+..+. +   +++++++.+.+.
T Consensus       281 ~~~~~~~~~D~v~lDPPR---~G~-----~~~~l~~-l---~~~~~ivyvSC~  321 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPR---AGL-----DDETLKL-V---QAYERILYISCN  321 (362)
T ss_pred             cccccCCCCCEEEECCCC---CCC-----cHHHHHH-H---HccCCEEEEEeC
Confidence                 1259999999873   132     2344454 3   347888877653

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.55  E-value=3.8e-06  Score=81.93  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=76.0

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---------C
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K  173 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---------~  173 (337)
                      +.+||++|||+|.++..+++..  .+|++||+++++++.|+++...+.    -.+++++.+|+.+++...         .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence            4579999999999999888764  589999999999999999987653    246999999999988641         1


Q ss_pred             ------CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       174 ------~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                            .+||+|++|++.   .|.     ..+..+. +   +++++++.+.+.
T Consensus       272 ~~~~~~~~~d~v~lDPPR---~G~-----~~~~l~~-l---~~~~~ivYvsC~  312 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPR---AGL-----DPDTCKL-V---QAYERILYISCN  312 (353)
T ss_pred             ccccccCCCCEEEECCCC---CCC-----cHHHHHH-H---HcCCcEEEEEcC
Confidence                  248999999873   132     2344444 3   347888887753

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.55  E-value=5.9e-07  Score=78.55  Aligned_cols=111  Identities=21%  Similarity=0.370  Sum_probs=73.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +..+||++|+|.|.++..+++..=...+++||-+++.+++|+.--...+  + +..+++...|...- ....++||+|+-
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~-~n~I~f~q~DI~~~-~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--F-SNEIRFQQLDITDP-DFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--C-CcceeEEEeeccCC-cccccceeEEee
Confidence            3449999999999999999986323459999999999999876543322  2 23488888887542 223467777753


Q ss_pred             eCC-CCCC---CCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~-dp~~---~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      -.+ |...   .++-..+  .-++.. +.+.|+|||++++-+
T Consensus       143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItS  181 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITS  181 (227)
T ss_pred             cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEe
Confidence            222 1110   1222222  234454 789999999999875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.53  E-value=1.2e-06  Score=79.40  Aligned_cols=74  Identities=20%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..++++.  .+++++|+++.+++.|++.+....   ...+++++.+|. ..   ..+.||+|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~~---~~~~fD~v~  132 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-ES---LLGRFDTVV  132 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-hh---ccCCcCEEE
Confidence            456899999999999999998864  469999999999999999876432   125889999992 22   346799998


Q ss_pred             EeC
Q 019699          181 GDL  183 (337)
Q Consensus       181 ~D~  183 (337)
                      +..
T Consensus       133 ~~~  135 (230)
T PRK07580        133 CLD  135 (230)
T ss_pred             Ecc
Confidence            754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.52  E-value=4.3e-07  Score=80.94  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +.++.++|+||||.|.-+..+++.  .-.|++||+++..++.+++.....     +=.++....|..++-  .+++||+|
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I   98 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFI   98 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEE
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEE
Confidence            456899999999999999999997  368999999999999887754332     223888888865542  24689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-..  -+ ..+ -...++. +++.++|||++++.
T Consensus        99 ~st~v~~f--L~-~~~-~~~i~~~-m~~~~~pGG~~li~  132 (192)
T PF03848_consen   99 VSTVVFMF--LQ-REL-RPQIIEN-MKAATKPGGYNLIV  132 (192)
T ss_dssp             EEESSGGG--S--GGG-HHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EEEEEecc--CC-HHH-HHHHHHH-HHhhcCCcEEEEEE
Confidence            98643211  11 112 2457787 79999999987764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK06202 hypothetical protein; Provisional

Probab=98.50  E-value=6.4e-07  Score=81.89  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      .++.+||+||||+|.++..++++    .+..+|++||+++++++.|++...       .+++++...|+... ...+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-------~~~~~~~~~~~~~l-~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-------RPGVTFRQAVSDEL-VAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-------cCCCeEEEEecccc-cccCCCc
Confidence            56789999999999998888753    234589999999999999988643       23456666654332 2245789


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|++...-..  -+..  ...++++. +.+.++  |.++++
T Consensus       131 D~V~~~~~lhh--~~d~--~~~~~l~~-~~r~~~--~~~~i~  165 (232)
T PRK06202        131 DVVTSNHFLHH--LDDA--EVVRLLAD-SAALAR--RLVLHN  165 (232)
T ss_pred             cEEEECCeeec--CChH--HHHHHHHH-HHHhcC--eeEEEe
Confidence            99999864221  1100  12468888 787777  445555

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.50  E-value=4.8e-07  Score=82.40  Aligned_cols=107  Identities=12%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--------CCCCCCCeEEEEccHHHHHhhc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~d~rv~v~~~D~~~~l~~~  172 (337)
                      ++..+||++|||.|.-+..++++  ..+|++||+++..++.+.+.-....        ......+++++.+|..++-...
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            45579999999999999999986  3689999999999997643211110        0123578999999998774333


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCce
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv  214 (337)
                      ...||.|+--..-..  -| .. ....+++. +.+.|+|||.
T Consensus       114 ~~~fd~v~D~~~~~~--l~-~~-~R~~~~~~-l~~lL~pgG~  150 (218)
T PRK13255        114 LADVDAVYDRAALIA--LP-EE-MRERYVQQ-LAALLPAGCR  150 (218)
T ss_pred             CCCeeEEEehHhHhh--CC-HH-HHHHHHHH-HHHHcCCCCe
Confidence            357999884332110  11 11 13568888 8999999985

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.50  E-value=3.1e-07  Score=86.03  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             CCCeEEEEecchhH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhhhh-h-----------------ccCCC-
Q 019699          102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-V-----------------NKEAF-  153 (337)
Q Consensus       102 ~p~~VLiIG~G~G~----~~~~ll~~~~-----~~~v~~VEid~~vi~~a~~~f~-~-----------------~~~~~-  153 (337)
                      .+.+|+++|||+|.    ++..++++.+     ..+|+++|||+.+++.|++-.- .                 ..+.+ 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4445554422     3689999999999999998421 0                 00000 


Q ss_pred             ----CCCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          154 ----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       154 ----~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                          -..++++...|..+.- ...++||+|++--. ...  .   .-.....++. +.++|+|||.+++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~---~~~~~~~l~~-l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--D---EPTQRKLLNR-FAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--C---HHHHHHHHHH-HHHHhCCCeEEEEEC
Confidence                0136788888876531 12478999998422 111  0   0112468888 799999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.45  E-value=3.7e-07  Score=81.96  Aligned_cols=100  Identities=25%  Similarity=0.405  Sum_probs=74.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+...||++.+|-|.++..++++...+.|.++|++|..++..+++...++  + +.++.++.+|+++++.  ...+|.|+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v-~~~i~~~~~D~~~~~~--~~~~drvi  174 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--V-ENRIEVINGDAREFLP--EGKFDRVI  174 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--C-CCeEEEEcCCHHHhcC--ccccCEEE
Confidence            56789999999999999999997777899999999999999999988774  2 4689999999999987  57899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      ++.+..          +.+|+.. +.++++++|++.
T Consensus       175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih  199 (200)
T PF02475_consen  175 MNLPES----------SLEFLDA-ALSLLKEGGIIH  199 (200)
T ss_dssp             E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred             ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence            998631          2367776 678899999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.44  E-value=5.1e-07  Score=82.96  Aligned_cols=97  Identities=23%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +..++||+||||.|..+.++++.+|..++++.|+ |.|++.+++          .+|++++.+|.+   ...+. +|+|+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~  163 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL  163 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence            4568999999999999999999888999999999 999999988          379999999975   44455 99999


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCC--ceEEEe
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQ  218 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~--Gvlv~~  218 (337)
                      +--. ..+  .+   =-....+++ +++.|+||  |.+++.
T Consensus       164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLII  198 (241)
T ss_dssp             EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEE
T ss_pred             eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEE
Confidence            8654 222  11   112457888 79999988  977765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=2.2e-06  Score=79.31  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE----ccHHHHHhhcCCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELESRKES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~----~D~~~~l~~~~~~  175 (337)
                      |-.+..+|++|||+|+++..+++.-+..+|++||.++..+.+|.++.....   -..++.+++    +|...-.+...++
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~  222 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK  222 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence            456678999999999999999987778899999999999999999876432   135777774    4443333333488


Q ss_pred             eeEEEEeCCC-CCCC-----------CCCcCCc--------hHHHHHHHhccccCCCceEEEeCC
Q 019699          176 YDVIIGDLAD-PIEG-----------GPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       176 yDvIi~D~~d-p~~~-----------~p~~~L~--------t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|+|+++++. +..+           .|...|.        -..++.. +.|+|.|||.+.++..
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence            9999999972 1111           1111111        1235665 6899999999998864

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.41  E-value=8.3e-06  Score=82.22  Aligned_cols=134  Identities=17%  Similarity=0.173  Sum_probs=94.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.+|||+|+|.|+=+..++... ....|+++|+++.=++..++++...+    -.++.+...|+..+-......||.|
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I  187 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI  187 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence            456899999999999988888753 34589999999999999999876432    3568999999987755556789999


Q ss_pred             EEeCCCCCCCCCCc----C-------------CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          180 IGDLADPIEGGPCY----K-------------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       180 i~D~~dp~~~~p~~----~-------------L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      ++|++-... |...    .             -...+.+.. +.++|+|||++|-.+.+    ..++.-+.+++.+-+-+
T Consensus       188 LvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT----~~~eENE~vV~~~L~~~  261 (470)
T PRK11933        188 LLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT----LNREENQAVCLWLKETY  261 (470)
T ss_pred             EEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC----CCHHHHHHHHHHHHHHC
Confidence            999983211 1110    0             112567777 67899999999755432    24555556666555455


Q ss_pred             Cc
Q 019699          243 KY  244 (337)
Q Consensus       243 ~~  244 (337)
                      +.
T Consensus       262 ~~  263 (470)
T PRK11933        262 PD  263 (470)
T ss_pred             CC
Confidence            54

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.41  E-value=9.9e-07  Score=78.14  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      .++..|||+||||+|.++..+.+.. ..+..+||||++-+..|.+           ..+.++.+|.-+-|... +++||.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~-----------rGv~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA-----------RGVSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH-----------cCCCEEECCHHHhHhhCCCCCccE
Confidence            3567899999999999999888865 5789999999998888765           35789999999888764 588999


Q ss_pred             EEEeCC
Q 019699          179 IIGDLA  184 (337)
Q Consensus       179 Ii~D~~  184 (337)
                      ||+.-+
T Consensus        79 VIlsqt   84 (193)
T PF07021_consen   79 VILSQT   84 (193)
T ss_pred             EehHhH
Confidence            998865

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.41  E-value=2.8e-06  Score=80.82  Aligned_cols=102  Identities=20%  Similarity=0.295  Sum_probs=74.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||+|.|.++..+++.  ..+|++||+|+.+++.+++.+....   ..++++++.+|+.++-   -..||+|+
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv  106 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV  106 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence            45578999999999999999986  3689999999999999999875431   1468999999997752   24689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~  219 (337)
                      .+++...        .+...++. +.. ..-...++++|-
T Consensus       107 aNlPY~I--------stpil~~l-l~~~~~~~~~vlm~Qk  137 (294)
T PTZ00338        107 ANVPYQI--------SSPLVFKL-LAHRPLFRCAVLMFQK  137 (294)
T ss_pred             ecCCccc--------CcHHHHHH-HhcCCCCceeeeeehH
Confidence            9886432        23445554 432 222356777763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.40  E-value=7.1e-06  Score=83.68  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=96.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI  179 (337)
                      .+..-+|+||||.|..+.++++..|...+.+||+....+..+.+.....    +-.++.++.+|+..+.... +++.|.|
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence            3456799999999999999998878899999999999877665543321    1257888988876554443 4779999


Q ss_pred             EEeCCCCCCCC--CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          180 IGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       180 i~D~~dp~~~~--p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      ++..+|||-..  .-..+.+.+|++. +++.|+|||.+-+.+.      +.+++..+...+.+
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~  477 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ  477 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence            99999998311  1236899999998 8999999999987752      34555555555543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.37  E-value=8.8e-06  Score=78.10  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++.+||+||||+|.++..+++.  ..+|+++|+++.+++.|++....... .....++++...|....    .++||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence            4679999999999999999985  36899999999999999998653210 01134678888886432    47899998


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-.. .+.   |...  -.++++. +. .+.++|+++..
T Consensus       218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs~  249 (315)
T PLN02585        218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIISF  249 (315)
T ss_pred             EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEEe
Confidence            6432 111   1111  1245665 44 46677776643

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.35  E-value=2.1e-06  Score=86.10  Aligned_cols=106  Identities=19%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             CCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+.||+||+|.|.+...+++.    ....+|.+||-++..+...++....+  .+ +.+|+++.+|.+++-  .+++.|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w-~~~V~vi~~d~r~v~--lpekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GW-GDKVTVIHGDMREVE--LPEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TT-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CC-CCeEEEEeCcccCCC--CCCceeE
Confidence            467999999999998776653    23579999999998887766543322  23 468999999988873  3579999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||+..-...  + ..+ ...|.+.. ..+.|+|+|+++-+
T Consensus       262 IVSElLGsf--g-~nE-l~pE~Lda-~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  262 IVSELLGSF--G-DNE-LSPECLDA-ADRFLKPDGIMIPS  296 (448)
T ss_dssp             EEE---BTT--B-TTT-SHHHHHHH-GGGGEEEEEEEESS
T ss_pred             EEEeccCCc--c-ccc-cCHHHHHH-HHhhcCCCCEEeCc
Confidence            999986432  2 133 34577777 78999999998744

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.34  E-value=4.4e-06  Score=80.21  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=61.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHh---hcCCcee
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELE---SRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~---~~~~~yD  177 (337)
                      ...++||||+|+|++...++......+++++|||+..++.|+++...+. .+ ..+++++. .|....+.   ...++||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GL-NGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CC-cCcEEEEEccchhhhhhcccccCCceE
Confidence            4589999999999887766654446789999999999999999987651 12 35788864 34433333   2356899


Q ss_pred             EEEEeCCC
Q 019699          178 VIIGDLAD  185 (337)
Q Consensus       178 vIi~D~~d  185 (337)
                      +|+++++.
T Consensus       192 livcNPPf  199 (321)
T PRK11727        192 ATLCNPPF  199 (321)
T ss_pred             EEEeCCCC
Confidence            99999973

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=7.5e-06  Score=77.33  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHH---HHHhhhhhccCCCCCCCeEEEE
Q 019699           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVE---FCKSYLVVNKEAFSDPRLELVI  162 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~---~a~~~f~~~~~~~~d~rv~v~~  162 (337)
                      +-+.+..-|++   .-..++||+||||.|..+-.+++. +.+.|+++|-++...-   +++++++.      ++++ ...
T Consensus       102 ~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~-~~l  170 (315)
T PF08003_consen  102 WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ------DPPV-FEL  170 (315)
T ss_pred             chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC------CccE-EEc
Confidence            55677666653   236789999999999999999986 4688999998887643   33333321      2232 333


Q ss_pred             ccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          163 NDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       163 ~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..+.+.|.. .+.||+||+-.- -+. ..|      .+.++. +++.|++||.+++.+
T Consensus       171 plgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  171 PLGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLET  219 (315)
T ss_pred             Ccchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEE
Confidence            567788876 688999998753 111 123      356677 799999999999775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=4.2e-06  Score=77.77  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC--ceeEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~--~yDvIi  180 (337)
                      ...||+||.|.|+++..+++..  .+|++||||+.+++..++.+..      .++++++.+|+.++=  ..+  .++.|+
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d--~~~l~~~~~vV  100 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFD--FPSLAQPYKVV  100 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCc--chhhcCCCEEE
Confidence            5799999999999999999973  6799999999999999998752      368999999998752  122  689999


Q ss_pred             EeCCCC
Q 019699          181 GDLADP  186 (337)
Q Consensus       181 ~D~~dp  186 (337)
                      .+++..
T Consensus       101 aNlPY~  106 (259)
T COG0030         101 ANLPYN  106 (259)
T ss_pred             EcCCCc
Confidence            998743

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.26  E-value=2.8e-06  Score=73.77  Aligned_cols=75  Identities=23%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-C-ceeEEEEe
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~-~yDvIi~D  182 (337)
                      .|+|+.||.|+-+..+++..  .+|++||+||.-++.|+.+....+   -..|++++.+|..+.+++.. . .||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            58999999999999999974  689999999999999999976542   14789999999999987643 2 28999999


Q ss_pred             CC
Q 019699          183 LA  184 (337)
Q Consensus       183 ~~  184 (337)
                      +|
T Consensus        77 PP   78 (163)
T PF09445_consen   77 PP   78 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            84

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.24  E-value=9.5e-06  Score=70.12  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---HHhh-cCCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELES-RKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---~l~~-~~~~  175 (337)
                      .....||++|-|+|.+++.+++|. ..+.++++|.+++.+....+.+         |.++++.+|+..   ++.+ .+..
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq~  117 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQF  117 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCCe
Confidence            456799999999999999999973 3568999999999999888865         345699999865   3433 3567


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||.||+-.+--.  -|  .-.+.+.++. +..+|..||.++.-.
T Consensus       118 ~D~viS~lPll~--~P--~~~~iaile~-~~~rl~~gg~lvqft  156 (194)
T COG3963         118 FDSVISGLPLLN--FP--MHRRIAILES-LLYRLPAGGPLVQFT  156 (194)
T ss_pred             eeeEEecccccc--Cc--HHHHHHHHHH-HHHhcCCCCeEEEEE
Confidence            999999986322  22  2235678888 788999999887644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.24  E-value=2.8e-07  Score=83.20  Aligned_cols=100  Identities=21%  Similarity=0.308  Sum_probs=73.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvIi~  181 (337)
                      -+++|+||||+|.++-.+...  ..++++|||+.+|++.|.+.-..         =++.++|+..|++ ..+++||+|..
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence            589999999999998877654  57899999999999999874211         1467788889998 46789999975


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ----+.- |   .|  ..+|-. +...|+|||.|.+.+.
T Consensus       195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE  226 (287)
T COG4976         195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE  226 (287)
T ss_pred             hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence            3211110 1   12  235555 6899999999998764

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=98.23  E-value=3.2e-06  Score=70.24  Aligned_cols=93  Identities=22%  Similarity=0.309  Sum_probs=66.1

Q ss_pred             CCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699          156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (337)
Q Consensus       156 ~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~  235 (337)
                      -+++++++|+++.+++...++|+|+.|.++|.. .|  .|.+.++|+. +++++++||++++.+..          ..+.
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys~a----------~~Vr   96 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYSSA----------GAVR   96 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES--B----------HHHH
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEeech----------HHHH
Confidence            356789999999999888999999999998863 44  7999999999 89999999999986521          2456


Q ss_pred             HHHhhhcCceeEEEeeccccCCceEEEEEec
Q 019699          236 NTLRQVFKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       236 ~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      +.|.++-=.|.    ..|.+++-..++.|++
T Consensus        97 ~~L~~aGF~v~----~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   97 RALQQAGFEVE----KVPGFGRKREMLRAVK  123 (124)
T ss_dssp             HHHHHCTEEEE----EEE-STTSSEEEEEEC
T ss_pred             HHHHHcCCEEE----EcCCCCCcchheEEEc
Confidence            67777633332    3567776667788876

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.23  E-value=4e-06  Score=78.13  Aligned_cols=74  Identities=18%  Similarity=0.362  Sum_probs=61.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||+|.|.++..+++..  .+|++||+|+.+++.+++.+..      .++++++.+|+.++-   -..||.|+
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv   96 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVV   96 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEE
Confidence            356899999999999999999873  6899999999999999987642      368999999987642   23589999


Q ss_pred             EeCCC
Q 019699          181 GDLAD  185 (337)
Q Consensus       181 ~D~~d  185 (337)
                      .+++.
T Consensus        97 ~NlPy  101 (258)
T PRK14896         97 SNLPY  101 (258)
T ss_pred             EcCCc
Confidence            99864

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.21  E-value=5.1e-06  Score=78.06  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..++++.  .+|+++|+|+++++.+++.+.       +++++++.+|+.++--. .-.+|.|+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~-~~~~~~vv  110 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLS-ELQPLKVV  110 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHH-HcCcceEE
Confidence            456799999999999999999985  389999999999999988652       26899999998875211 11158999


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      .+++
T Consensus       111 ~NlP  114 (272)
T PRK00274        111 ANLP  114 (272)
T ss_pred             EeCC
Confidence            8875

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=5.6e-06  Score=73.98  Aligned_cols=120  Identities=21%  Similarity=0.228  Sum_probs=83.7

Q ss_pred             hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhc------cCCCCCCC
Q 019699           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPR  157 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d~r  157 (337)
                      ..|.++|-.+--. ..+.-+.|++|.|+|.++.-+...  .+....++||.-+++++.+++++...      ..-++.++
T Consensus        67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~  145 (237)
T KOG1661|consen   67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE  145 (237)
T ss_pred             HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence            4566655432211 245578999999999887665543  22334599999999999999987532      23466789


Q ss_pred             eEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          158 LELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       158 v~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +.++++|++.--. ...+||.|.+-+..+.  .|          +. +-..|+++|-+++-.+
T Consensus       146 l~ivvGDgr~g~~-e~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  146 LSIVVGDGRKGYA-EQAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG  194 (237)
T ss_pred             eEEEeCCccccCC-ccCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence            9999999987544 3578999999976543  23          23 3467889888877543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.17  E-value=6.3e-06  Score=73.30  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvI  179 (337)
                      +...+||+||||+|.++..+++.. ..++++||+++++++.+++           .+++++.+|+.+.+. ..+++||+|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence            356799999999999998887764 4578999999999998864           246788889876543 234689999


Q ss_pred             EEeCC
Q 019699          180 IGDLA  184 (337)
Q Consensus       180 i~D~~  184 (337)
                      ++...
T Consensus        80 i~~~~   84 (194)
T TIGR02081        80 ILSQT   84 (194)
T ss_pred             EEhhH
Confidence            99764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=5.2e-05  Score=75.74  Aligned_cols=103  Identities=19%  Similarity=0.256  Sum_probs=83.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvI  179 (337)
                      ...+|||+=||.|.++..+++.  ..+|++||++++.++.|+++...++    -.+++++.+|+.++....  ...+|+|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V  366 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV  366 (432)
T ss_pred             CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence            4578999999999999999964  6899999999999999999987663    245999999999998775  3678999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ++|++-.   |.     ..++.+. + ..++|..++-+.+.
T Consensus       367 vvDPPR~---G~-----~~~~lk~-l-~~~~p~~IvYVSCN  397 (432)
T COG2265         367 VVDPPRA---GA-----DREVLKQ-L-AKLKPKRIVYVSCN  397 (432)
T ss_pred             EECCCCC---CC-----CHHHHHH-H-HhcCCCcEEEEeCC
Confidence            9998632   32     3577776 3 47889998887764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=4.8e-05  Score=73.42  Aligned_cols=106  Identities=25%  Similarity=0.278  Sum_probs=87.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++..||++-+|-|.++..++++.. .+|.++||||..++..+++..+|+-   ..+++.+.+|++++..+. ..+|-||
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v---~~~v~~i~gD~rev~~~~-~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV---EGRVEPILGDAREVAPEL-GVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc---cceeeEEeccHHHhhhcc-ccCCEEE
Confidence            4589999999999999999998753 4499999999999999999988752   456999999999998765 7899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +..+.          .+.+|+.. +.+.|+++|++-.....+
T Consensus       262 m~~p~----------~a~~fl~~-A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         262 MGLPK----------SAHEFLPL-ALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             eCCCC----------cchhhHHH-HHHHhhcCcEEEEEeccc
Confidence            99863          12467776 778999999988765433

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.12  E-value=3.9e-06  Score=73.72  Aligned_cols=125  Identities=19%  Similarity=0.301  Sum_probs=73.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH-----HHHHhh----
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES----  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~-----~~~l~~----  171 (337)
                      .+.+||+||++.|+++..++++. +..+|.+||+.+.      .-         -+.+..+.+|.     .+.+.+    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~~~~~~~i~~~~~~   87 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITNPENIKDIRKLLPE   87 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccchhhHHHhhhhhccc
Confidence            67999999999999999999875 4689999999886      10         12333333332     223322    


Q ss_pred             cCCceeEEEEeCCCCCCCCCC------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          172 RKESYDVIIGDLADPIEGGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      ..+++|+|++|........+.      ..|.. .-+.. +.+.|++||.+++..-     ...+. ..+...++..|..+
T Consensus        88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~-~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v  159 (181)
T PF01728_consen   88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLIL-SQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV  159 (181)
T ss_dssp             TTCSESEEEE-------SSHHSSHHHHHHHHH-HHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred             cccCcceeccccccCCCCchhhHHHHHHHHHH-HHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence            236899999999532211100      01111 12222 3467999998887642     22222 36777888888888


Q ss_pred             eEEE
Q 019699          246 VPYS  249 (337)
Q Consensus       246 ~~~~  249 (337)
                      ..+.
T Consensus       160 ~~~K  163 (181)
T PF01728_consen  160 KIVK  163 (181)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.09  E-value=3.7e-05  Score=69.04  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=88.5

Q ss_pred             ChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc
Q 019699           84 DEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN  163 (337)
Q Consensus        84 de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~  163 (337)
                      -|..|.++++.. ++  .+..+||.||.|-|.+...+.+.++. +-..+|-.|+|.+--|++-..     +..+|.+..+
T Consensus        86 WEtpiMha~A~a-i~--tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g  156 (271)
T KOG1709|consen   86 WETPIMHALAEA-IS--TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEG  156 (271)
T ss_pred             hhhHHHHHHHHH-Hh--hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEec
Confidence            355566666542 22  67899999999999999999887764 567899999999999887543     2356777766


Q ss_pred             cHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          164 DARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       164 D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      --.+.+.+. ++.||-|+-|.+.+.      .--+++|++. +-+.|+|+|++..-
T Consensus       157 ~WeDvl~~L~d~~FDGI~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  157 RWEDVLNTLPDKHFDGIYYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYF  205 (271)
T ss_pred             chHhhhccccccCcceeEeechhhH------HHHHHHHHHH-HhhhcCCCceEEEe
Confidence            555555443 466999999998543      1124789998 79999999999754

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.09  E-value=2.6e-05  Score=72.44  Aligned_cols=73  Identities=22%  Similarity=0.371  Sum_probs=59.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee---
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD---  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD---  177 (337)
                      .++.+||+||+|+|.++..+++..  .+++++|+|+.+++.+++.+..      +++++++.+|+.++-.   ..||   
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~   96 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL   96 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence            456899999999999999999875  4699999999999999987642      4789999999876422   2466   


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +|+.+++
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.09  E-value=2.4e-05  Score=71.57  Aligned_cols=110  Identities=13%  Similarity=0.073  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc--------cCCCCCCCeEEEEccHHHHHh--
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE--  170 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~--------~~~~~d~rv~v~~~D~~~~l~--  170 (337)
                      ++..+||+.|||.|.-+..++.+.  -+|++||+++..++.+.+-....        ...+...+++++++|.+++=.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            456899999999999999999873  57999999999999876522110        001234689999999987621  


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ...++||+|+--.+--.  -|+ . ....+.+. +.+.|+|||.++.
T Consensus       120 ~~~~~fD~VyDra~~~A--lpp-~-~R~~Y~~~-l~~lL~pgg~lll  161 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIA--LPN-D-LRTNYAKM-MLEVCSNNTQILL  161 (226)
T ss_pred             cccCCcCeeeeehhHhc--CCH-H-HHHHHHHH-HHHHhCCCcEEEE
Confidence            22357999875443211  121 2 24567777 7999999997654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.06  E-value=3e-05  Score=71.71  Aligned_cols=93  Identities=15%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ...++|+||+|+|.++..+..++  .+|.+-|+++.|....++           ..++++-.|  +| .+.+.+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~-----------kg~~vl~~~--~w-~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSK-----------KGFTVLDID--DW-QQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHh-----------CCCeEEehh--hh-hccCCceEEEee
Confidence            46789999999999999998875  679999999999765544           234455333  33 345678999976


Q ss_pred             -eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 -D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       +.-|-.. .|      ...++. +++.|+|+|++++-
T Consensus       158 LNvLDRc~-~P------~~LL~~-i~~~l~p~G~lilA  187 (265)
T PF05219_consen  158 LNVLDRCD-RP------LTLLRD-IRRALKPNGRLILA  187 (265)
T ss_pred             hhhhhccC-CH------HHHHHH-HHHHhCCCCEEEEE
Confidence             3333221 23      356677 79999999988764

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK10742 putative methyltransferase; Provisional

Probab=98.05  E-value=5.8e-05  Score=69.68  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-c-CCCCC---CCeEEEEccHHHHHhhcCCceeEE
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-EAFSD---PRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-~-~~~~d---~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +|||+-+|.|..+.+++..  .++|++||-+|.+..+.++.+... . .....   .|++++.+|..+||+.....||+|
T Consensus        91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV  168 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_pred             EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence            8999999999999999987  356999999999999999887642 1 11112   579999999999999877789999


Q ss_pred             EEeCCCCC
Q 019699          180 IGDLADPI  187 (337)
Q Consensus       180 i~D~~dp~  187 (337)
                      ++|+..|.
T Consensus       169 YlDPMfp~  176 (250)
T PRK10742        169 YLDPMFPH  176 (250)
T ss_pred             EECCCCCC
Confidence            99998665

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=0.00013  Score=64.08  Aligned_cols=127  Identities=21%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+++=+|+||+|+|.+...+.+. .+.....+.||||...++.++-...+     .-++.++..|...-|+.  ++-|++
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL  114 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL  114 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence            34788999999999999888775 24456789999999999988765544     34688999999888876  889999


Q ss_pred             EEeCC-CCCCCCCC--------------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLA-DPIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~-dp~~~~p~--------------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      +.+++ .|....+-              ..-.+..++.. +...|+|.|++.+....      ....+++++.+++-
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~------~N~p~ei~k~l~~~  184 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALR------ANKPKEILKILEKK  184 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehh------hcCHHHHHHHHhhc
Confidence            99987 33221221              11224567777 78999999999877532      22234566666544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.03  E-value=2.5e-05  Score=68.51  Aligned_cols=108  Identities=23%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--h-hcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~-~~~~~yD  177 (337)
                      ..+++||+||+|.|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-|--+-+  . ....+||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence            467899999999999998888875578999999999 99999998876532 23466776664432211  1 1246899


Q ss_pred             EEEE-eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~-D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||. |....       .-.-..+.+. +++.|+++|.+++-
T Consensus       122 ~IlasDv~Y~-------~~~~~~L~~t-l~~ll~~~~~vl~~  155 (173)
T PF10294_consen  122 VILASDVLYD-------EELFEPLVRT-LKRLLKPNGKVLLA  155 (173)
T ss_dssp             EEEEES--S--------GGGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred             EEEEecccch-------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            9986 43311       1123567776 78999999975544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.00  E-value=1.6e-05  Score=72.43  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh-hhhhcc-------CCCCCCCeEEEEccHHHHHhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELES  171 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~-~f~~~~-------~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      .+.+.+||+.|||.|.-+..++++  .-+|++||+++..++.+.+ +...+.       ....+.+++++.+|.+++=..
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            355679999999999999999987  3689999999999998843 321110       012456899999999885443


Q ss_pred             cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCce
Q 019699          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv  214 (337)
                      ..++||+|+=-.+--.  -|  .-....+.+. ++++|+|||.
T Consensus       113 ~~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~  150 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR  150 (218)
T ss_dssp             CHHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred             hcCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence            3368999985444211  22  1234567777 8999999998

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.00  E-value=2.2e-05  Score=69.31  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcE---------EEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~---------v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      .+...|||--||+|+++.|.+.......         +.++|+|+++++.|++++....   -...+.+...|+.++- .
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~  102 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L  102 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence            4457899999999999999876533333         8999999999999999986432   1346889999987764 3


Q ss_pred             cCCceeEEEEeCCCCCCCCC---CcCCchHHHHHHHhccccCCCceEEEe
Q 019699          172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p---~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ..+.+|+|++|++-....+.   ...|| ..|++. +++.|++..++++.
T Consensus       103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT  150 (179)
T ss_dssp             TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred             ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence            35789999999975442111   01333 357777 68899995566554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.98  E-value=3.4e-05  Score=81.23  Aligned_cols=114  Identities=15%  Similarity=0.125  Sum_probs=78.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-------C-----CcEEEEEECChH---HHHHH-----------Hhhhhh-------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-------T-----VEKVVMCDIDEE---VVEFC-----------KSYLVV-------  148 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-------~-----~~~v~~VEid~~---vi~~a-----------~~~f~~-------  148 (337)
                      ..-+||++|.|+|.-.....+..       +     ..+++.+|.+|-   -+..+           ++....       
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34789999999997544433211       1     247889998652   22211           111100       


Q ss_pred             -ccCCCCCC--CeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          149 -NKEAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       149 -~~~~~~d~--rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       +.-.+++.  +++++++|+++.+++...++|+|+.|.|+|.. .|  .+.+.++|+. ++++++|||++++.+
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence             00112333  45688999999998877789999999998863 44  8999999999 899999999999764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.97  E-value=4.2e-05  Score=72.72  Aligned_cols=77  Identities=23%  Similarity=0.171  Sum_probs=64.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC---cee
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~---~yD  177 (337)
                      +...++|+++|.|+-+..+++..+ ..+|+++|+|+++++.|++.+..      ..|++++.+|..++.....+   ++|
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD   92 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD   92 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence            346899999999999999998753 57999999999999999987532      25899999999988654333   799


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      .|+.|+-
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9999985

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.95  E-value=1.1e-05  Score=64.50  Aligned_cols=97  Identities=22%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             EEEecchhHHHHHHHhcCC-C--cEEEEEECChH---HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-CceeEE
Q 019699          107 FIMGGGEGSTAREILRHKT-V--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI  179 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~-~--~~v~~VEid~~---vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvI  179 (337)
                      |+||...|.++..+++... .  .++++||..+.   .-+..++ ..      -..+++++.+|..+++.+.. ++||+|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence            6799888988877776422 2  37999999995   3333333 11      13579999999999987765 899999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++|.....      . .....++. +..+|+|||++++.
T Consensus        74 ~iDg~H~~------~-~~~~dl~~-~~~~l~~ggviv~d  104 (106)
T PF13578_consen   74 FIDGDHSY------E-AVLRDLEN-ALPRLAPGGVIVFD  104 (106)
T ss_dssp             EEES---H------H-HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EECCCCCH------H-HHHHHHHH-HHHHcCCCeEEEEe
Confidence            99985211      1 23456676 78999999999875

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.87  E-value=5.3e-05  Score=68.35  Aligned_cols=125  Identities=18%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+.=+|+||||+|..+..+...  .-..++|||+|.|++.|.+- ...        -.++.+|--+-+.-.+++||.+|+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEE
Confidence            3678999999999998777653  36789999999999999862 111        134555544555556799998887


Q ss_pred             eCCCCCC-------CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH-HHhhhcCc
Q 019699          182 DLADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN-TLRQVFKY  244 (337)
Q Consensus       182 D~~dp~~-------~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~-~l~~vF~~  244 (337)
                      =+.-.|-       ..|...|  ..||.. +..+|+.++..++|..+.    +......+.. .+++-|..
T Consensus       119 ISAvQWLcnA~~s~~~P~~Rl--~~FF~t-Ly~~l~rg~raV~QfYpe----n~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  119 ISAVQWLCNADKSLHVPKKRL--LRFFGT-LYSCLKRGARAVLQFYPE----NEAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             eeeeeeecccCccccChHHHH--HHHhhh-hhhhhccCceeEEEeccc----chHHHHHHHHHHHhhccCC
Confidence            6653331       1221222  368998 799999999999997532    3334444444 45555765

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.83  E-value=2.8e-05  Score=70.49  Aligned_cols=101  Identities=26%  Similarity=0.427  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe--EEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv--~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..-..+++||||-|.+.+.+.+. ++++++++|.+..|++.|+.-        +||.+  ...++| .++|.-..+++|+
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL  140 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL  140 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence            34467999999999999999987 489999999999999999863        35554  446677 5777666789999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||+...-+|.    ++|  ...+.. |+..|+|+|+|+..
T Consensus       141 iisSlslHW~----NdL--Pg~m~~-ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  141 IISSLSLHWT----NDL--PGSMIQ-CKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhh----ccC--chHHHH-HHHhcCCCccchhH
Confidence            9999886663    122  134455 79999999999864

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.80  E-value=0.00013  Score=70.13  Aligned_cols=144  Identities=22%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc-cH
Q 019699           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA  165 (337)
Q Consensus        87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~-D~  165 (337)
                      .+.+.|+.++.  ...+..|||=-||+|+++.|+.-.  ..++.+.|||..+++-|+.++....    -+...++.. |+
T Consensus       184 ~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da  255 (347)
T COG1041         184 RLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDA  255 (347)
T ss_pred             HHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEeccc
Confidence            34566665333  355679999999999999998764  4789999999999999999997642    234555555 76


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCC-CC---cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          166 RAELESRKESYDVIIGDLADPIEGG-PC---YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~-p~---~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      .. +.-.++++|.|++|++-...+. ..   ..|| .++++. +.++|++||.+++...    .      ..........
T Consensus       256 ~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~-~~evLk~gG~~vf~~p----~------~~~~~~~~~~  322 (347)
T COG1041         256 TN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALES-ASEVLKPGGRIVFAAP----R------DPRHELEELG  322 (347)
T ss_pred             cc-CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHH-HHHHhhcCcEEEEecC----C------cchhhHhhcC
Confidence            53 3333346999999998543221 11   1333 578888 7999999999998752    1      1122345556


Q ss_pred             cCceeEEEee
Q 019699          242 FKYVVPYSAH  251 (337)
Q Consensus       242 F~~v~~~~~~  251 (337)
                      |+.+..+...
T Consensus       323 f~v~~~~~~~  332 (347)
T COG1041         323 FKVLGRFTMR  332 (347)
T ss_pred             ceEEEEEEEe
Confidence            7777666543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.80  E-value=0.0004  Score=61.61  Aligned_cols=98  Identities=22%  Similarity=0.398  Sum_probs=71.1

Q ss_pred             eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +++|||.|+|-  ++..++  .|..+++.||-...=+...+.-....    .=++++++.+.+.+  .....+||+|++-
T Consensus        51 ~~lDiGSGaGfPGipLaI~--~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIA--RPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHh--CCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEee
Confidence            89999999994  444444  46789999999998776665543321    12579999999888  4456899999999


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +..+.          ..++.. +...|+++|.+++.-|.
T Consensus       123 Av~~l----------~~l~~~-~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  123 AVAPL----------DKLLEL-ARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             SSSSH----------HHHHHH-HGGGEEEEEEEEEEESS
T ss_pred             hhcCH----------HHHHHH-HHHhcCCCCEEEEEcCC
Confidence            87432          256676 78899999999887653

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.77  E-value=8.5e-05  Score=72.43  Aligned_cols=79  Identities=20%  Similarity=0.239  Sum_probs=55.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---------  171 (337)
                      +.+.+|||+-||.|.++..+++.  ..+|++||+++..++.|+++...+.    -.+++++.+++.++...         
T Consensus       195 ~~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~  268 (352)
T PF05958_consen  195 LSKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR  268 (352)
T ss_dssp             T-TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred             cCCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence            34458999999999999999886  4799999999999999999988763    35799998887655321         


Q ss_pred             ------cCCceeEEEEeCCC
Q 019699          172 ------RKESYDVIIGDLAD  185 (337)
Q Consensus       172 ------~~~~yDvIi~D~~d  185 (337)
                            ...++|+|++|+|-
T Consensus       269 ~~~~~~~~~~~d~vilDPPR  288 (352)
T PF05958_consen  269 LKGIDLKSFKFDAVILDPPR  288 (352)
T ss_dssp             GGGS-GGCTTESEEEE---T
T ss_pred             hhhhhhhhcCCCEEEEcCCC
Confidence                  12368999999863

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.77  E-value=0.00027  Score=66.50  Aligned_cols=109  Identities=17%  Similarity=0.314  Sum_probs=64.1

Q ss_pred             CCCeEEEEecchhHHHH-HHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~-~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .|++|+.||+|.--++. .+++ |.....|+.+|+||+.++.+++-..... .+ ..+++++.+|+...-.+ -..||+|
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~-~L-~~~m~f~~~d~~~~~~d-l~~~DvV  196 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL-GL-SKRMSFITADVLDVTYD-LKEYDVV  196 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH--SSEEEEES-GGGG-GG-----SEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-cc-cCCeEEEecchhccccc-cccCCEE
Confidence            47899999999765544 3433 3445789999999999999998765111 11 57899999998764322 3589999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++.+.-.....+     ..+.+++ +.++++||..+++-.
T Consensus       197 ~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  197 FLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS  230 (276)
T ss_dssp             EE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred             EEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence            999874321112     3578888 799999999999874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.0002  Score=66.45  Aligned_cols=132  Identities=18%  Similarity=0.170  Sum_probs=96.7

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK  173 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~  173 (337)
                      ++.......||+-|.|+|++..++++. .|-.++...|..+.-.+.|++.|..+.   -..++++.+.|...  |..+ .
T Consensus       100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~k-s  175 (314)
T KOG2915|consen  100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLIK-S  175 (314)
T ss_pred             HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCcccc-c
Confidence            444456689999999999999999885 356799999999999999999987653   25689999988653  3332 5


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEE
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS  249 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~  249 (337)
                      ..+|.|++|.+.||.+-|  +          +..+|+.+|..+++. +|+    .++.++....|++. |-++....
T Consensus       176 ~~aDaVFLDlPaPw~AiP--h----------a~~~lk~~g~r~csF-SPC----IEQvqrtce~l~~~gf~~i~~vE  235 (314)
T KOG2915|consen  176 LKADAVFLDLPAPWEAIP--H----------AAKILKDEGGRLCSF-SPC----IEQVQRTCEALRSLGFIEIETVE  235 (314)
T ss_pred             cccceEEEcCCChhhhhh--h----------hHHHhhhcCceEEec-cHH----HHHHHHHHHHHHhCCCceEEEEE
Confidence            789999999999996555  1          345888888655554 332    45666666677764 66655443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.75  E-value=6.8e-05  Score=71.89  Aligned_cols=105  Identities=14%  Similarity=0.212  Sum_probs=72.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +.+.||++|||+|.+..+.++.. ..+|.+||-+. +++.|++-+..+.  + +..++++.+...+.. -..++.|+|++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~--~-~~ii~vi~gkvEdi~-LP~eKVDiIvS  133 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG--L-EDVITVIKGKVEDIE-LPVEKVDIIVS  133 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC--c-cceEEEeecceEEEe-cCccceeEEee
Confidence            57899999999999999999874 78999999976 4588888776543  2 357888888876651 12489999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      ..--..  --.+.++..-.|..  .+.|+|||++.
T Consensus       134 EWMGy~--Ll~EsMldsVl~AR--dkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGYF--LLYESMLDSVLYAR--DKWLKEGGLIY  164 (346)
T ss_pred             hhhhHH--HHHhhhhhhhhhhh--hhccCCCceEc
Confidence            853111  00011222222322  47899999885

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.75  E-value=0.00019  Score=73.64  Aligned_cols=79  Identities=16%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCC--------CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH----
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL----  169 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~--------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l----  169 (337)
                      ...+||+.|||+|+++..++++..        ...+.++|||+..++.|+..+....    +...++..+|.....    
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence            456999999999999988876531        2578999999999999998875432    223566666654321    


Q ss_pred             hhcCCceeEEEEeCC
Q 019699          170 ESRKESYDVIIGDLA  184 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~  184 (337)
                      ....++||+||.++|
T Consensus       107 ~~~~~~fD~IIgNPP  121 (524)
T TIGR02987       107 ESYLDLFDIVITNPP  121 (524)
T ss_pred             ccccCcccEEEeCCC
Confidence            112358999999997

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.70  E-value=0.00013  Score=67.68  Aligned_cols=78  Identities=19%  Similarity=0.297  Sum_probs=62.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.-||+||.|+|.++..+++.  .++|++||+||.++....+.+....   ...+++++.+|.   ++..-..||++|
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV  128 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV  128 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence            45678999999999999999986  4899999999999987777664321   247899999995   444447899999


Q ss_pred             EeCCCC
Q 019699          181 GDLADP  186 (337)
Q Consensus       181 ~D~~dp  186 (337)
                      .+.+..
T Consensus       129 sNlPyq  134 (315)
T KOG0820|consen  129 SNLPYQ  134 (315)
T ss_pred             ccCCcc
Confidence            998743

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.68  E-value=8.6e-05  Score=69.36  Aligned_cols=75  Identities=24%  Similarity=0.428  Sum_probs=61.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvI  179 (337)
                      +...||+||.|.|.++++++++.  .++++||+|+..++..++.+.      .+++++++.+|+.++-...  ......|
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v  101 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV  101 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence            67899999999999999999975  899999999999999988765      2689999999998763222  2466788


Q ss_pred             EEeCC
Q 019699          180 IGDLA  184 (337)
Q Consensus       180 i~D~~  184 (337)
                      +.+++
T Consensus       102 v~NlP  106 (262)
T PF00398_consen  102 VGNLP  106 (262)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            88875

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.67  E-value=0.00013  Score=63.15  Aligned_cols=80  Identities=10%  Similarity=-0.039  Sum_probs=56.7

Q ss_pred             EEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc
Q 019699          130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL  209 (337)
Q Consensus       130 ~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L  209 (337)
                      ++||++++|++.|++....... ...++++++.+|+.+. ...+++||+|++...-.+  -+    -..+++++ ++++|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~--~~----d~~~~l~e-i~rvL   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRN--VV----DRLRAMKE-MYRVL   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC-CCCCCCeeEEEecchhhc--CC----CHHHHHHH-HHHHc
Confidence            4799999999999876542110 0125799999998764 444578999998653222  11    13578898 89999


Q ss_pred             CCCceEEEe
Q 019699          210 NPEGIFVTQ  218 (337)
Q Consensus       210 ~p~Gvlv~~  218 (337)
                      +|||.+++.
T Consensus        72 kpGG~l~i~   80 (160)
T PLN02232         72 KPGSRVSIL   80 (160)
T ss_pred             CcCeEEEEE
Confidence            999988765

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.67  E-value=5.9e-05  Score=71.87  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhc-------CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      ......+||+-.||+|+++.++.++       ....++.++|+|+..+.+|+-++....  .......+..+|...--..
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~  120 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKF  120 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSC
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--ccccccccccccccccccc
Confidence            3344568999999999998888763       246789999999999999998765432  1123456888887543222


Q ss_pred             c-CCceeEEEEeCCCCCC--CCC--C-----------cCCchHHHHHHHhccccCCCceEEEe
Q 019699          172 R-KESYDVIIGDLADPIE--GGP--C-----------YKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       172 ~-~~~yDvIi~D~~dp~~--~~p--~-----------~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      . .++||+|++++|-...  ...  .           ..-....|.+. +-+.|+++|.+++-
T Consensus       121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAII  182 (311)
T ss_dssp             TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEE
Confidence            2 4689999999973221  000  0           00011247787 67899999976543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.63  E-value=8.6e-05  Score=71.75  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=68.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC-----CCCeEEEEccHHH-HHhh---
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARA-ELES---  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-----d~rv~v~~~D~~~-~l~~---  171 (337)
                      ++.+||+||||-|+-+.-..+. .+..++++||++..|+.|++... .......     +=...++.+|... -|..   
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            6689999999977754444443 47899999999999999888662 1110000     1135677888752 1221   


Q ss_pred             -cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       172 -~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       ...+||+|-+-..-+.  .-...-.-+.|++. +.++|+|||+++.-.
T Consensus       141 ~~~~~FDvVScQFalHY--~Fese~~ar~~l~N-vs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHY--AFESEEKARQFLKN-VSSLLKPGGYFIGTT  186 (331)
T ss_dssp             STTS-EEEEEEES-GGG--GGSSHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHH--hcCCHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence             2358999988765221  00001122458999 799999999998754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.59  E-value=0.00043  Score=63.47  Aligned_cols=68  Identities=12%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             EEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHH
Q 019699           71 ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF  141 (337)
Q Consensus        71 ~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~  141 (337)
                      .+.++|......+..+-..+++.+.+.  ..+.+.||++|||+|.++..++++ +..+|++||+++.++..
T Consensus        46 ~I~v~~~~~~vsr~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        46 KIELLQNPLFVSRGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             EEeccCccchhhhhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            344554322222333334444443322  235678999999999999999987 57899999999977654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.58  E-value=0.00026  Score=69.64  Aligned_cols=104  Identities=29%  Similarity=0.361  Sum_probs=77.5

Q ss_pred             CCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +-+||+-=+|+|.=+...++. .+..+|++-|+|++.++..++++..+.  ..+.++++...|+...+.....+||+|=+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~--~~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG--LEDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc--ccCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999888899776555555 667899999999999999999988764  23348999999999998766789999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-    .|      ..|++. +-+.++.||++++.+
T Consensus       128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence            9872    22      368887 678999999998764

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.0022  Score=62.66  Aligned_cols=141  Identities=17%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             HHhcCCC-CCeEEEEecchhHHHHHHHhcCC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc
Q 019699           96 ALLHHPN-PKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR  172 (337)
Q Consensus        96 ~l~~~~~-p~~VLiIG~G~G~~~~~ll~~~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~  172 (337)
                      +.+..+. ..+|||++++-|+=+..++..-.  ...|+++|+|+.=++..++++...+    -.++.++..|++.+....
T Consensus       149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~  224 (355)
T COG0144         149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELL  224 (355)
T ss_pred             HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccc
Confidence            4444444 58999999999987777776533  3457999999999999888876432    245889999998775543


Q ss_pred             C--CceeEEEEeCCCCCC----CCCCc------------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHH
Q 019699          173 K--ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (337)
Q Consensus       173 ~--~~yDvIi~D~~dp~~----~~p~~------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i  234 (337)
                      .  .+||.|++|++-...    ..|..            .-+..+++.. +.+.|+|||+|+.-+.+.    .++.-..+
T Consensus       225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~v  299 (355)
T COG0144         225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEV  299 (355)
T ss_pred             cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHH
Confidence            3  369999999972211    01211            1124567777 688999999998765432    34444555


Q ss_pred             HHHHhhhcCce
Q 019699          235 YNTLRQVFKYV  245 (337)
Q Consensus       235 ~~~l~~vF~~v  245 (337)
                      ++.+-+-.+..
T Consensus       300 V~~~L~~~~~~  310 (355)
T COG0144         300 VERFLERHPDF  310 (355)
T ss_pred             HHHHHHhCCCc
Confidence            65555555543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.52  E-value=0.00063  Score=72.20  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhc----C--------------------------------------CCcEEEEEECChHHH
Q 019699          102 NPKTIFIMGGGEGSTAREILRH----K--------------------------------------TVEKVVMCDIDEEVV  139 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~----~--------------------------------------~~~~v~~VEid~~vi  139 (337)
                      ....++|-+||+|+++.|++..    +                                      ...+++++|+|+.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            3578999999999999888652    0                                      123699999999999


Q ss_pred             HHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCC
Q 019699          140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADP  186 (337)
Q Consensus       140 ~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp  186 (337)
                      +.|+++....+  + ..++++..+|+.++-... .++||+|++|+|..
T Consensus       270 ~~A~~N~~~~g--~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg  314 (702)
T PRK11783        270 QAARKNARRAG--V-AELITFEVKDVADLKNPLPKGPTGLVISNPPYG  314 (702)
T ss_pred             HHHHHHHHHcC--C-CcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence            99999987543  2 357899999998764322 25799999999743

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.51  E-value=0.00014  Score=64.05  Aligned_cols=98  Identities=24%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      .-+.++|+|+|.++..+++.  .++|.++|.||...+.|++++..++    +.+++++.+|++.|=-   +.-|+||+..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~f---e~ADvvicEm  104 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYDF---ENADVVICEM  104 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEecccccccc---cccceeHHHH
Confidence            57899999999998776664  6899999999999999999986553    6789999999998732   5689999877


Q ss_pred             CCCCCCCCCcCCchHH---HHHHHhccccCCCceEEEe
Q 019699          184 ADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~e---f~~~~~~~~L~p~Gvlv~~  218 (337)
                      -|..       |...+   .... +-+-|+.+|.++-|
T Consensus       105 lDTa-------Li~E~qVpV~n~-vleFLr~d~tiiPq  134 (252)
T COG4076         105 LDTA-------LIEEKQVPVINA-VLEFLRYDPTIIPQ  134 (252)
T ss_pred             hhHH-------hhcccccHHHHH-HHHHhhcCCccccH
Confidence            5421       22222   2233 23466778877644

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.48  E-value=0.00054  Score=62.87  Aligned_cols=98  Identities=24%  Similarity=0.319  Sum_probs=57.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi  180 (337)
                      ..++||.||=.+.......+... .++|++||||+.+++..++.....     .-.++.+..|.++-|.. ..++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence            57999999998887766666554 479999999999999988876543     12499999999988765 368999999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G  213 (337)
                      .|++.... |  .    .-|... .-+.|+..|
T Consensus       118 TDPPyT~~-G--~----~LFlsR-gi~~Lk~~g  142 (243)
T PF01861_consen  118 TDPPYTPE-G--L----KLFLSR-GIEALKGEG  142 (243)
T ss_dssp             E---SSHH-H--H----HHHHHH-HHHTB-STT
T ss_pred             eCCCCCHH-H--H----HHHHHH-HHHHhCCCC
Confidence            99863210 1  1    235666 457888777

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.45  E-value=0.00063  Score=61.73  Aligned_cols=144  Identities=18%  Similarity=0.258  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChH----HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~----vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~  173 (337)
                      .+..+||-+|+++|++...+..-- +...|.+||.++.    .+++|++          .+|+--+.+||+.--+-  .-
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv  141 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV  141 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence            346799999999999999998863 3668999999994    5566665          37888899999854322  13


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe--CCCCCc-CCChhHHHHHHHHHhhh-cCceeEEE
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGI-FSHTEVFSCIYNTLRQV-FKYVVPYS  249 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~--~~~p~~-~~~~~~~~~i~~~l~~v-F~~v~~~~  249 (337)
                      +..|+|+.|...|.  .      .+-+..+ ++.-|++||.+++-  +.+-.. ....+.+++..+.|++. |.-...  
T Consensus       142 ~~VDvI~~DVaQp~--Q------a~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~--  210 (229)
T PF01269_consen  142 EMVDVIFQDVAQPD--Q------ARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ--  210 (229)
T ss_dssp             --EEEEEEE-SSTT--H------HHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE--
T ss_pred             ccccEEEecCCChH--H------HHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE--
Confidence            68999999998654  1      1334455 56789999977653  221111 12346788888899874 554332  


Q ss_pred             eeccccCCceEEEEEe
Q 019699          250 AHIPSFADTWGWIMAS  265 (337)
Q Consensus       250 ~~vP~~~~~~~~~~as  265 (337)
                      ..+..|.....+++|.
T Consensus       211 i~LePy~~dH~~vv~~  226 (229)
T PF01269_consen  211 ITLEPYERDHAMVVGR  226 (229)
T ss_dssp             EE-TTTSTTEEEEEEE
T ss_pred             eccCCCCCCcEEEEEE
Confidence            2344454334455553

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.45  E-value=0.00066  Score=64.55  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=75.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC--CCCeEEEEccHHHH-----HhhcC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDARAE-----LESRK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--d~rv~v~~~D~~~~-----l~~~~  173 (337)
                      +....+|++|||-|+-++-..+. ++..++++||...-|+-|++.........+  -=.+.++.+|...-     +...+
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            56678999999999887776664 578999999999999999886542211100  01367888887543     21123


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+||+|-+-..-+..-..  .---+-++++ +.++|+|||+++-..
T Consensus       195 p~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI  237 (389)
T ss_pred             CCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence            449999776542210000  0011347788 789999999998653

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.45  E-value=0.0015  Score=61.81  Aligned_cols=138  Identities=13%  Similarity=0.090  Sum_probs=94.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      ....+|||++++.|+=+..++... ....|+++|+++.=+...++++...    .-.++.+...|+..+.... ...||.
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd~  159 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFDR  159 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccch
Confidence            345789999999999887777653 3579999999999999988887643    2457888889999886543 346999


Q ss_pred             EEEeCCCCCC----CCCCc------------CCchHHHHHHHhcccc----CCCceEEEeCCCCCcCCChhHHHHHHHHH
Q 019699          179 IIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (337)
Q Consensus       179 Ii~D~~dp~~----~~p~~------------~L~t~ef~~~~~~~~L----~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l  238 (337)
                      |++|++-...    ..|..            .-...+.++. +.+.+    +|||.++--+.+   . .++.-..+++.+
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS---~-~~eENE~vV~~f  234 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS---L-SPEENEEVVEKF  234 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH---H-HGGGTHHHHHHH
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc---H-HHHHHHHHHHHH
Confidence            9999972211    11210            1123567777 68899    999999865532   1 334444556655


Q ss_pred             hhhcCceeE
Q 019699          239 RQVFKYVVP  247 (337)
Q Consensus       239 ~~vF~~v~~  247 (337)
                      -+.+|+...
T Consensus       235 l~~~~~~~l  243 (283)
T PF01189_consen  235 LKRHPDFEL  243 (283)
T ss_dssp             HHHSTSEEE
T ss_pred             HHhCCCcEE
Confidence            555676543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.001  Score=64.31  Aligned_cols=102  Identities=25%  Similarity=0.315  Sum_probs=81.9

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +++||+-=+|+|.=+...+..-+..+|++-||+|+.+++.+++...+.    .....++..|+-.++.+....||+|=+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence            889999999999877666655445599999999999999999998762    2345566699999998878899999999


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-    .|      .+|.+. +.+..+.+|++++-+
T Consensus       129 PFG----SP------aPFlDa-A~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PFG----SP------APFLDA-ALRSVRRGGLLCVTA  154 (380)
T ss_pred             CCC----CC------chHHHH-HHHHhhcCCEEEEEe
Confidence            882    23      257777 678888999998764

>PRK04148 hypothetical protein; Provisional

Probab=97.34  E-value=0.00058  Score=57.43  Aligned_cols=69  Identities=22%  Similarity=0.167  Sum_probs=46.7

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+++++|+||+|.|. ++..+.+.  ..+|+++|+|+..++.+++.           .++++.+|.++-=.+.-+.+|+|
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence            456899999999996 77777654  36899999999999988764           24556666432111111446666


Q ss_pred             EEe
Q 019699          180 IGD  182 (337)
Q Consensus       180 i~D  182 (337)
                      .+-
T Consensus        82 ysi   84 (134)
T PRK04148         82 YSI   84 (134)
T ss_pred             EEe
Confidence            654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.00034  Score=59.35  Aligned_cols=92  Identities=17%  Similarity=0.079  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -+.+++++||||.|-+..... .+..+.|.++||||+.++++.++.....     -+..+...|...... ....||..+
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~-~~g~fDtav  119 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL-KGGIFDTAV  119 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc-cCCeEeeEE
Confidence            467999999999999885544 4677899999999999999999864321     123555555443322 247899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHH
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      +|++....    ..-...+|.+.
T Consensus       120 iNppFGTk----~~~aDm~fv~~  138 (185)
T KOG3420|consen  120 INPPFGTK----KKGADMEFVSA  138 (185)
T ss_pred             ecCCCCcc----cccccHHHHHH
Confidence            99875431    12244577775

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.0071  Score=54.93  Aligned_cols=133  Identities=17%  Similarity=0.223  Sum_probs=82.1

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +++++|||.|.|-=+.-++-..+..++|.+|-...=+...++-...    ++-++++++.+.+.++-.+... ||+|.+-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEee
Confidence            7999999999995443333223456799999998866655443221    2346899999998888543223 9999998


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeecccc
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSF  255 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~  255 (337)
                      +..+.          ..+... +...|++||.+++.-+..    ..+.+.+.-+.+... |.....+....|.-
T Consensus       143 Ava~L----------~~l~e~-~~pllk~~g~~~~~k~~~----~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~  201 (215)
T COG0357         143 AVASL----------NVLLEL-CLPLLKVGGGFLAYKGLA----GKDELPEAEKAILPLGGQVEKVFSLTVPEL  201 (215)
T ss_pred             hccch----------HHHHHH-HHHhcccCCcchhhhHHh----hhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence            87432          123343 678899999876543321    223344444444444 33333444455654

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0003  Score=66.05  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=110.7

Q ss_pred             ccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHh
Q 019699           43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILR  122 (337)
Q Consensus        43 ~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~  122 (337)
                      .++...|+..+.+++|++.+.. +..|.++.+++.....+.+ ..|.+.|+--     -+.++|.++|| +|....+.++
T Consensus       121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~g-----y~~~~v~l~iG-DG~~fl~~~~  192 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLACG-----YEGKKVKLLIG-DGFLFLEDLK  192 (337)
T ss_pred             CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhcc-----cCCCceEEEec-cHHHHHHHhc
Confidence            4566779999999999999988 6688999998877666555 4566665521     45678999888 9998888887


Q ss_pred             cCCCcEEEEEECChHHHHHHHhh----hhhccCCCCCCCeEEEEccHHHHHhh---cCCceeEEEEeCCC-CCCCCCCcC
Q 019699          123 HKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLAD-PIEGGPCYK  194 (337)
Q Consensus       123 ~~~~~~v~~VEid~~vi~~a~~~----f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yDvIi~D~~d-p~~~~p~~~  194 (337)
                      +. ...|+++|+|.-+..++..|    |+.-..++....+.+.++|...+..+   ...+||-++-|..+ ++.+.|-..
T Consensus       193 ~~-~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTyp  271 (337)
T KOG1562|consen  193 EN-PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYP  271 (337)
T ss_pred             cC-CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCc
Confidence            65 37899999999998888775    44334567788999999987654332   12455555555442 222122111


Q ss_pred             CchHHHHHHHhccccCCCceEEEeCC
Q 019699          195 LYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       195 L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .-.. -|.. +. .|+|+|-+..+..
T Consensus       272 sg~i-gf~l-~s-~~~~~~~~~~p~n  294 (337)
T KOG1562|consen  272 SGRI-GFML-CS-KLKPDGKYKTPGN  294 (337)
T ss_pred             cceE-EEEE-ec-ccCCCCCccCCCC
Confidence            0000 1111 23 3999999877653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.24  E-value=0.0018  Score=61.95  Aligned_cols=103  Identities=20%  Similarity=0.327  Sum_probs=75.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ..+-||++|+|+|.+...++.. +.++|.+||-+. |.+-|++....+   .-..|+.++.|-..+.  +.+++-|+||+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N---~~~~rItVI~GKiEdi--eLPEk~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASN---NLADRITVIPGKIEDI--ELPEKVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcC---CccceEEEccCccccc--cCchhccEEEe
Confidence            3678999999999998877764 688999999964 888888876544   2347899998875443  34689999998


Q ss_pred             eCCCCCCCCCCcCCchH---HHHHHHhccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~---ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+-     |  ..|+.+   |-|-. +++.|+|+|.+.-..
T Consensus       250 EPM-----G--~mL~NERMLEsYl~-Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  250 EPM-----G--YMLVNERMLESYLH-ARKWLKPNGKMFPTV  282 (517)
T ss_pred             ccc-----h--hhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence            853     1  234443   44555 589999999876443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.23  E-value=0.0039  Score=58.73  Aligned_cols=130  Identities=16%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCC--cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~  175 (337)
                      ...|-+||+|.+|.|.-...++...+.  .+|..+|.++.-++..++......  + ..-+++..+|+++.  +.....+
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L-~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--L-EDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--C-ccceEEEecCCCCHhHhhccCCC
Confidence            467899999999999988887775443  799999999999999998765432  2 23459999999875  4444567


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      .+++|+..-...  -|.+.+.. .-+.. +.++|.|||.++. ++.|  | |+ .++-+.+.|.++
T Consensus       210 P~l~iVsGL~El--F~Dn~lv~-~sl~g-l~~al~pgG~lIy-TgQP--w-HP-Qle~IAr~LtsH  266 (311)
T PF12147_consen  210 PTLAIVSGLYEL--FPDNDLVR-RSLAG-LARALEPGGYLIY-TGQP--W-HP-QLEMIARVLTSH  266 (311)
T ss_pred             CCEEEEecchhh--CCcHHHHH-HHHHH-HHHHhCCCcEEEE-cCCC--C-Cc-chHHHHHHHhcc
Confidence            898887643111  01122222 23455 6789999998874 4444  4 33 345555666654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.20  E-value=0.0015  Score=58.66  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=83.5

Q ss_pred             CCCC-eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccH-HHHHh---hcCC
Q 019699          101 PNPK-TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDA-RAELE---SRKE  174 (337)
Q Consensus       101 ~~p~-~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~-~~~l~---~~~~  174 (337)
                      +... +||+||+|+|.-+.+++++.|..+-.--|.|+....-.+.|...... ... +-+.+=+.+. ..+..   ...+
T Consensus        23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCC
Confidence            3344 59999999999999999998888888999999987666666543211 111 2233322221 22211   1246


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC---CChhHHHHHHHHHhhhcC
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~---~~~~~~~~i~~~l~~vF~  243 (337)
                      .||+|++--.-+.  .|  ---+..+|+. +.++|++||+|++..  |...   ...+.-...-+.|++.-|
T Consensus       102 ~~D~i~~~N~lHI--~p--~~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp  166 (204)
T PF06080_consen  102 SFDAIFCINMLHI--SP--WSAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP  166 (204)
T ss_pred             CcceeeehhHHHh--cC--HHHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence            8999998655333  22  1124678888 799999999999874  2111   123344455566666544

The function of this family is unknown.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.12  E-value=0.0038  Score=60.29  Aligned_cols=116  Identities=11%  Similarity=0.067  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..++||||++.|+.+..++++.  .+|++||..+---.           ..++++|+.+.+|+..|... .+.+|+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-----------L~~~~~V~h~~~d~fr~~p~-~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-----------LMDTGQVEHLRADGFKFRPP-RKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-----------hhCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence            456899999999999999999873  49999996541111           12579999999999999754 57899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCC--ceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~--Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      +|...    .| .     ..++. +.+.|..|  .-.++|.--|. ...-+..+.....+.+.+
T Consensus       276 cDmve----~P-~-----rva~l-m~~Wl~~g~cr~aIfnLKlpm-k~r~~~v~~~l~~i~~~l  327 (357)
T PRK11760        276 CDMVE----KP-A-----RVAEL-MAQWLVNGWCREAIFNLKLPM-KKRYEEVRQCLELIEEQL  327 (357)
T ss_pred             Eeccc----CH-H-----HHHHH-HHHHHhcCcccEEEEEEEcCC-CCCHHHHHHHHHHHHHHH
Confidence            99874    23 1     22333 44455433  24455553331 223344444444555444

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0036  Score=56.32  Aligned_cols=126  Identities=21%  Similarity=0.275  Sum_probs=82.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-----HHhh-cC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-RK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-----~l~~-~~  173 (337)
                      .+...|++||+.-|+.+..+++.-+ ...|++||++|--               ..+.|.++.+|...     -|.. .+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            4568999999999999999888643 2359999998721               12568888877642     2222 22


Q ss_pred             -CceeEEEEeCCCCCCCCCC--cCCch----HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          174 -ESYDVIIGDLADPIEGGPC--YKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       174 -~~yDvIi~D~~dp~~~~p~--~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                       ...|+|++|...... |-.  .+..+    .--++. +...|+++|.+++-.      .+.+....+++.++..|..|.
T Consensus       109 ~~~~DvV~sD~ap~~~-g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~  180 (205)
T COG0293         109 GAPVDVVLSDMAPNTS-GNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVK  180 (205)
T ss_pred             CCCcceEEecCCCCcC-CCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeE
Confidence             447999999873221 210  11111    112232 457899999998753      233445678899999999887


Q ss_pred             EEE
Q 019699          247 PYS  249 (337)
Q Consensus       247 ~~~  249 (337)
                      ...
T Consensus       181 ~~K  183 (205)
T COG0293         181 IFK  183 (205)
T ss_pred             Eec
Confidence            654

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.09  E-value=0.0012  Score=63.41  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      -.-.+|+|+|.|.+++.++.+++  +|.+++.|...+-.++.++.        |.++-+.+|+++-+    .+-|+|++-
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~----P~~daI~mk  243 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT----PKGDAIWMK  243 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC----CCcCeEEEE
Confidence            36789999999999999999875  49999999888877777653        33888889976543    345688876


Q ss_pred             CC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       183 ~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .- ..|.+   ..+  ..|+++ |++.|.|+|.+++-
T Consensus       244 WiLhdwtD---edc--vkiLkn-C~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  244 WILHDWTD---EDC--VKILKN-CKKSLPPGGKIIVV  274 (342)
T ss_pred             eecccCCh---HHH--HHHHHH-HHHhCCCCCEEEEE
Confidence            54 22211   122  479999 79999999977653

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.05  E-value=0.0029  Score=56.76  Aligned_cols=127  Identities=15%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             hhHHHHHHhHHHhcC---CCCCeEEEEecchhH----HHHHHHh---c-CC-CcEEEEEECChHHHHHHHhh--------
Q 019699           86 FIYHESLVHPALLHH---PNPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY--------  145 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~---~~p~~VLiIG~G~G~----~~~~ll~---~-~~-~~~v~~VEid~~vi~~a~~~--------  145 (337)
                      |..-+..+.++++..   ..+-+|+..||++|.    ++..+..   . .+ ..+|.+.|||+.+++.|++=        
T Consensus        12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~   91 (196)
T PF01739_consen   12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR   91 (196)
T ss_dssp             HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred             HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence            333333443445422   356799999999994    3333333   1 11 35899999999999999862        


Q ss_pred             ----------h-hhccCCCC-----CCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccc
Q 019699          146 ----------L-VVNKEAFS-----DPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPR  208 (337)
Q Consensus       146 ----------f-~~~~~~~~-----d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~  208 (337)
                                | ....+.+.     ..++++...|..+ .....++||+|++--- --.     ..-.....++. +.+.
T Consensus        92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~-l~~~  164 (196)
T PF01739_consen   92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-----DPETQQRVLRR-LHRS  164 (196)
T ss_dssp             TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS------HHHHHHHHHH-HGGG
T ss_pred             hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-----CHHHHHHHHHH-HHHH
Confidence                      2 11000110     1467777777666 2223478999998632 000     01113457777 7899


Q ss_pred             cCCCceEEEeC
Q 019699          209 LNPEGIFVTQA  219 (337)
Q Consensus       209 L~p~Gvlv~~~  219 (337)
                      |+|||.|++-.
T Consensus       165 L~pgG~L~lG~  175 (196)
T PF01739_consen  165 LKPGGYLFLGH  175 (196)
T ss_dssp             EEEEEEEEE-T
T ss_pred             cCCCCEEEEec
Confidence            99999998743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.02  E-value=0.0038  Score=56.53  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yDv  178 (337)
                      .+..|++.-+|.|+-....+.++  ..|.++||||.=+..||.+....+  ..+ |++++.||..+....   .+..+|+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG--I~~-rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG--VPD-RITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec--CCc-eeEEEechHHHHHHHHhhhhheeee
Confidence            55667775555444444444433  469999999999999999987653  234 999999998776544   3455778


Q ss_pred             EEEeCC
Q 019699          179 IIGDLA  184 (337)
Q Consensus       179 Ii~D~~  184 (337)
                      ++..++
T Consensus       169 vf~spp  174 (263)
T KOG2730|consen  169 VFLSPP  174 (263)
T ss_pred             eecCCC
Confidence            877653

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.93  E-value=0.0011  Score=60.68  Aligned_cols=107  Identities=25%  Similarity=0.385  Sum_probs=71.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCC--cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hhh--cCCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~--~~~~y  176 (337)
                      .+.++|+||||.|.+..-+++..+.  -+|.++|.+|..+++.+++-...     ..|+...+-|.-.- +..  ..+..
T Consensus        71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~sv  145 (264)
T KOG2361|consen   71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSV  145 (264)
T ss_pred             ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCcc
Confidence            3458999999999999999997665  78999999999999999875432     24555444443211 222  24678


Q ss_pred             eEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|.+--. +..  .| ...  ..-+.+ +.++|+|||.+++--
T Consensus       146 D~it~IFvLSAi--~p-ek~--~~a~~n-l~~llKPGG~llfrD  183 (264)
T KOG2361|consen  146 DIITLIFVLSAI--HP-EKM--QSVIKN-LRTLLKPGGSLLFRD  183 (264)
T ss_pred             ceEEEEEEEecc--Ch-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence            87754332 111  22 221  234566 689999999998764

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.0034  Score=63.22  Aligned_cols=106  Identities=18%  Similarity=0.348  Sum_probs=76.8

Q ss_pred             CCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHh-hhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~-~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...++++|+|-|-+.+..++.    ....++.+||-+|..+-..+. .+..    + +.||+++.+|-|.|-.. .++-|
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W-~~~Vtii~~DMR~w~ap-~eq~D  441 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----W-DNRVTIISSDMRKWNAP-REQAD  441 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----h-cCeeEEEeccccccCCc-hhhcc
Confidence            456888999999887666652    223578899999998766554 2322    1 57999999999998632 37899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++.+-...  | ..+ .+.|-+.. +.+.|+|+||.+-..
T Consensus       442 I~VSELLGSF--G-DNE-LSPECLDG-~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  442 IIVSELLGSF--G-DNE-LSPECLDG-AQKFLKPDGISIPSS  478 (649)
T ss_pred             chHHHhhccc--c-Ccc-CCHHHHHH-HHhhcCCCceEccch
Confidence            9999886332  1 123 35688887 789999999987654

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.79  E-value=0.0046  Score=58.02  Aligned_cols=111  Identities=19%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------------c---cC---------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------------N---KE---------------  151 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------------~---~~---------------  151 (337)
                      .+.+||+=|+|.|.++.++++.  .-.+.+.|.+--|+=..+--+..            .   .+               
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            4579999999999999999997  35899999999886544321110            0   00               


Q ss_pred             ------CCCCCCeEEEEccHHHHHhhc--CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       152 ------~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                            .-...++.+..||..++-...  .++||+|+.--+-..    +..+  .++++. ++++|+|||+. +|.|+-
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni--~~Yi~t-I~~lLkpgG~W-IN~GPL  204 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENI--IEYIET-IEHLLKPGGYW-INFGPL  204 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHH--HHHHHH-HHHHhccCCEE-EecCCc
Confidence                  011357889999988776544  478999988765221    1233  378888 89999999965 587743

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.67  E-value=0.0063  Score=50.77  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      +|+||+|.|..+..+++..+..++.++|.+|...+.+++++..+.    -++++++...
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a   56 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA   56 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence            799999999999999887766699999999999999999876542    1356666554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.66  E-value=0.011  Score=57.73  Aligned_cols=111  Identities=22%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCC--------------------------------c-------EEEEEECChHHHHHHH
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTV--------------------------------E-------KVVMCDIDEEVVEFCK  143 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~--------------------------------~-------~v~~VEid~~vi~~a~  143 (337)
                      .+..++==||+|+++.|++-....                                .       .+.++|||+.+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            368899999999999888765320                                1       3779999999999999


Q ss_pred             hhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCC---CcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       144 ~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p---~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+....+   -...+++..+|+..+-... +.+|+||+++|-..+-+-   ...|| .+|-+. +++.++--+.+++-+
T Consensus       272 ~NA~~AG---v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~tt  344 (381)
T COG0116         272 ANARAAG---VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHhcC---CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEEc
Confidence            9865432   2467999999987663332 789999999985442111   11255 367776 788888877777653

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.034  Score=49.88  Aligned_cols=127  Identities=18%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yDv  178 (337)
                      .+..+||-||+.+|++...+..--+...|.+||.++.+.+-   .+....   +.+|+-=+.+||+.--+  ..-+.-|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re---Ll~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE---LLDVAE---KRPNIIPILEDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH---HHHHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence            56789999999999999999987666789999999986542   222111   24667778888863211  11256999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc--eEEEeCCCCCcCCC-hhHHHHHHHHHhhhc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSH-TEVFSCIYNTLRQVF  242 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G--vlv~~~~~p~~~~~-~~~~~~i~~~l~~vF  242 (337)
                      |+.|...|..        .+-+-.+ +..-|+++|  ++++.+.|-....+ .+.+++-.+.|++-+
T Consensus       149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~  206 (231)
T COG1889         149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG  206 (231)
T ss_pred             EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence            9999986641        1234455 577899999  55555443322222 456776777777664

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.52  E-value=0.016  Score=55.34  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=63.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cC-Ccee
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~-~~yD  177 (337)
                      ++..++|.=+|.|+-+..+++..+..+|.++|.|+.+++.|++.+...     ..|++++.++..++.+.   .+ +++|
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD   94 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID   94 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence            446899999999999999998754589999999999999999976432     36899999998876432   22 5799


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      .|+.|+-
T Consensus        95 gIl~DLG  101 (305)
T TIGR00006        95 GILVDLG  101 (305)
T ss_pred             EEEEecc
Confidence            9999985

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.52  E-value=0.023  Score=51.30  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-----cCCCCCCCeEEEEccHHH--HHhhcC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARA--ELESRK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~d~rv~v~~~D~~~--~l~~~~  173 (337)
                      .+..-.+|||+|.|.+...++...+..+..+||+.+...+.|++.....     .-.....+++++.+|..+  +....-
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            4456789999999999877776656788999999999999887643210     011234678899888653  222222


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ..-|+|+++.+--   .+  .|.  ..+.. ....|++|-.++.
T Consensus       121 s~AdvVf~Nn~~F---~~--~l~--~~L~~-~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 SDADVVFVNNTCF---DP--DLN--LALAE-LLLELKPGARIIS  156 (205)
T ss_dssp             HC-SEEEE--TTT----H--HHH--HHHHH-HHTTS-TT-EEEE
T ss_pred             cCCCEEEEecccc---CH--HHH--HHHHH-HHhcCCCCCEEEE
Confidence            4579999986521   11  111  12233 2356787776664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.51  E-value=0.016  Score=52.26  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      |.||||-=|.++.++++.....++.++||++.-++.|++......   ...+++++.+||.+-+... +..|.|++-.  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG--   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKPG-EDVDTIVIAG--   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--GG-G---EEEEEE--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCCC-CCCCEEEEec--
Confidence            689999999999999998777899999999999999999986542   2469999999999988542 3369888873  


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMA  264 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~a  264 (337)
                           .... ...++++. ....++..-.|++|-.     .+.   ..+.+.|.+. |..+.-..+.  .-+....++.|
T Consensus        75 -----MGG~-lI~~ILe~-~~~~~~~~~~lILqP~-----~~~---~~LR~~L~~~gf~I~~E~lv~--e~~~~YeIi~~  137 (205)
T PF04816_consen   75 -----MGGE-LIIEILEA-GPEKLSSAKRLILQPN-----THA---YELRRWLYENGFEIIDEDLVE--ENGRFYEIIVA  137 (205)
T ss_dssp             -----E-HH-HHHHHHHH-TGGGGTT--EEEEEES-----S-H---HHHHHHHHHTTEEEEEEEEEE--ETTEEEEEEEE
T ss_pred             -----CCHH-HHHHHHHh-hHHHhccCCeEEEeCC-----CCh---HHHHHHHHHCCCEEEEeEEEe--ECCEEEEEEEE
Confidence                 3222 34577777 5667776667888731     222   3445566655 5544322211  10112345677


Q ss_pred             ecCC
Q 019699          265 SDSP  268 (337)
Q Consensus       265 s~~p  268 (337)
                      ++..
T Consensus       138 ~~~~  141 (205)
T PF04816_consen  138 ERGE  141 (205)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            7654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.43  E-value=0.0076  Score=57.19  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             CCCeEEEEecchhH----HHHHHHhcC----CCcEEEEEECChHHHHHHHhhh-hhc--cC--------CC------C--
Q 019699          102 NPKTIFIMGGGEGS----TAREILRHK----TVEKVVMCDIDEEVVEFCKSYL-VVN--KE--------AF------S--  154 (337)
Q Consensus       102 ~p~~VLiIG~G~G~----~~~~ll~~~----~~~~v~~VEid~~vi~~a~~~f-~~~--~~--------~~------~--  154 (337)
                      .+-||...||++|.    ++..+.+..    ...+|++.|||+.+++.|++-. +..  .+        -|      .  
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            45799999999994    333333321    1357999999999999998731 100  00        00      0  


Q ss_pred             --------CCCeEEEEccHHHHHhhcCCceeEEEEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          155 --------DPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       155 --------d~rv~v~~~D~~~~l~~~~~~yDvIi~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                              ..+|++...|..+.-....+.||+|++-- .-..  .   .-.....++. +.+.|+|||.|++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~---~~~~~~vl~~-l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--D---KTTQERILRR-FVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--C---HHHHHHHHHH-HHHHhCCCcEEEEe
Confidence                    12444444444321000136799999842 1111  0   0123467777 78999999998874

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.0037  Score=62.50  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC---Cce
Q 019699          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~---~~y  176 (337)
                      .++-+||+.=+++|.-+ |++...+++.+|++-|.|+..++..+++...+.   .+..++....|+...+-...   ++|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence            45678898777777654 444445778899999999999999999887763   35688999999988765554   889


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|=+|++-    .|      ..|++. +-+.+++||+|++-+
T Consensus       185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~  216 (525)
T KOG1253|consen  185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC  216 (525)
T ss_pred             ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence            999999872    12      268887 788999999998754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.26  E-value=0.026  Score=53.16  Aligned_cols=47  Identities=19%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhh
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      -.|++|||+|+|.|+.+-.+.... ...++++||.++.++++++.-+.
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence            368999999999998776665543 46789999999999999998664

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.16  E-value=0.13  Score=48.35  Aligned_cols=148  Identities=16%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~  183 (337)
                      +|+++.+|.|++...+.+. +...+.++|+|+..++..+.+++..          ++.+|..++.... ...+|+|+.++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence            6899999999998777664 4677889999999999999887521          5567766654433 45799999998


Q ss_pred             CC-CCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCceeEEEeec
Q 019699          184 AD-PIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI  252 (337)
Q Consensus       184 ~d-p~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v~~~~~~v  252 (337)
                      += +.. .+       +-..|+ .+|++. + +.++|.=+++=|.  ++...  ..+.+..+.+.|++.-=.+.......
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a  145 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTLF-FEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEELGYNVYWKLLNA  145 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHHH-HHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhCCcEEEEEEEEH
Confidence            62 110 01       111122 456664 4 4568876555454  22121  24567777777776532333333333


Q ss_pred             cccC----CceEEEEEecCC
Q 019699          253 PSFA----DTWGWIMASDSP  268 (337)
Q Consensus       253 P~~~----~~~~~~~as~~p  268 (337)
                      ..|+    ..-.|++|++..
T Consensus       146 ~~~GvPQ~R~R~~~ia~~~~  165 (275)
T cd00315         146 SDYGVPQNRERVFIIGIRKD  165 (275)
T ss_pred             HHcCCCCCCcEEEEEEEeCC
Confidence            3332    224578887643

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.99  E-value=0.11  Score=46.08  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=81.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc----cHHHHH---hh-c
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN----DARAEL---ES-R  172 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~----D~~~~l---~~-~  172 (337)
                      +..+||++|+..|+.+.-+.+.. |...|.+|||-+        .+|.       +.++++.+    |-..+.   +. .
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~-------~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPP-------EGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCC-------CCcccccccccCCHHHHHHHHHhCC
Confidence            45799999999999998777763 778899999832        1222       22333332    332221   11 2


Q ss_pred             CCceeEEEEeCCCCCCCCCC--cCCchHH----HHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          173 KESYDVIIGDLADPIEGGPC--YKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~--~~L~t~e----f~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      ..+-|+|++|-. |...|..  .+....|    .+.- .-..+.|+|.++...     |. ...-..+.+.|+++|..|+
T Consensus       134 ~r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~Vk  205 (232)
T KOG4589|consen  134 NRPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNVK  205 (232)
T ss_pred             CCcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhcE
Confidence            477999999986 2222321  1111111    1111 235688999999764     32 2233466788999999987


Q ss_pred             EEEeeccccCC-ceEEEEEecC
Q 019699          247 PYSAHIPSFAD-TWGWIMASDS  267 (337)
Q Consensus       247 ~~~~~vP~~~~-~~~~~~as~~  267 (337)
                      .+.- -.+.++ .-.+++|.+.
T Consensus       206 ~vKP-~Asr~eS~E~y~v~~~~  226 (232)
T KOG4589|consen  206 KVKP-DASRDESAETYLVCLNF  226 (232)
T ss_pred             eeCC-ccccccccceeeeeeec
Confidence            6541 112221 2346777653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.94  E-value=0.086  Score=41.67  Aligned_cols=102  Identities=21%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             EEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcC-CceeEEEEe
Q 019699          106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD  182 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~-~~yDvIi~D  182 (337)
                      ++++|+|.|... .+.+.... ..++++|+++.+++.++..... ..   ...+.+..+|.... +.-.. ..||++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---LGLVDFVVADALGGVLPFEDSASFDLVISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC---CCceEEEEeccccCCCCCCCCCceeEEeee
Confidence            999999999876 33332221 3788899999999885543321 10   11167888887652 33223 479999333


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .....   .  .  ....+.. +.+.|+|+|.+++...
T Consensus       127 ~~~~~---~--~--~~~~~~~-~~~~l~~~g~~~~~~~  156 (257)
T COG0500         127 LVLHL---L--P--PAKALRE-LLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eehhc---C--C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence            32211   0  1  3567777 7899999998877653

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.92  E-value=0.052  Score=51.50  Aligned_cols=78  Identities=23%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---c-CCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~-~~~y  176 (337)
                      +..-.+|.=.|.|+-++++++..+ ..+++++|.||.+++.|++.+...     ++|++++.+....+...   . -.++
T Consensus        23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~v   97 (314)
T COG0275          23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKV   97 (314)
T ss_pred             CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCce
Confidence            346788888999999999998754 557999999999999999987543     47999999876554322   2 3689


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |-|+.|+-
T Consensus        98 DGiL~DLG  105 (314)
T COG0275          98 DGILLDLG  105 (314)
T ss_pred             eEEEEecc
Confidence            99999985

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.92  E-value=0.031  Score=52.52  Aligned_cols=43  Identities=28%  Similarity=0.325  Sum_probs=34.6

Q ss_pred             CCCeEEEEecchh----HHHHHHHhcCC-----CcEEEEEECChHHHHHHHh
Q 019699          102 NPKTIFIMGGGEG----STAREILRHKT-----VEKVVMCDIDEEVVEFCKS  144 (337)
Q Consensus       102 ~p~~VLiIG~G~G----~~~~~ll~~~~-----~~~v~~VEid~~vi~~a~~  144 (337)
                      .+-+|.-.||++|    +++..+.++.+     ..+|++.|||..+++.|+.
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            4789999999999    45555555542     4689999999999999986

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.90  E-value=0.0071  Score=55.55  Aligned_cols=82  Identities=21%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC-----CCCeEEEEccHHHHHhhcCCceeE
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+|||.=+|-|.=+.-++..  .++|+++|-+|-+..+.+.=+.......+     -.|++++.+|..+||+...+.||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            48999777777666555543  36899999999988887764432111001     138999999999999866789999


Q ss_pred             EEEeCCCCC
Q 019699          179 IIGDLADPI  187 (337)
Q Consensus       179 Ii~D~~dp~  187 (337)
                      |..|+-.|.
T Consensus       155 VY~DPMFp~  163 (234)
T PF04445_consen  155 VYFDPMFPE  163 (234)
T ss_dssp             EEE--S---
T ss_pred             EEECCCCCC
Confidence            999986543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.79  E-value=0.029  Score=53.72  Aligned_cols=79  Identities=22%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---Hhhc--CCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~--~~~  175 (337)
                      .+....+|.=.|.|+-+.++++..+..++.++|.||++++.|++.+...     ++|++++.++..++   +...  ..+
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~   93 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINK   93 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCc
Confidence            3456788888899999999998766699999999999999999876532     57999999876543   4443  258


Q ss_pred             eeEEEEeCC
Q 019699          176 YDVIIGDLA  184 (337)
Q Consensus       176 yDvIi~D~~  184 (337)
                      +|.|+.|+-
T Consensus        94 ~dgiL~DLG  102 (310)
T PF01795_consen   94 VDGILFDLG  102 (310)
T ss_dssp             EEEEEEE-S
T ss_pred             cCEEEEccc
Confidence            999999984

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.73  E-value=0.052  Score=49.62  Aligned_cols=108  Identities=16%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             hhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEE--ECChHHHHHHHhhhhhccCCCCCCCeEE
Q 019699           85 EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLEL  160 (337)
Q Consensus        85 e~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~d~rv~v  160 (337)
                      +.+|.+-+-+.|+....+.++||+||||.-+.-+  .+++.  ..+|++|  |+++++.++++           .+++++
T Consensus         7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~-----------~~~i~~   73 (223)
T PRK05562          7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK-----------YGNLKL   73 (223)
T ss_pred             hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEE
Confidence            3466666666777777788999999999877643  34443  3667776  88888877654           246777


Q ss_pred             EEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          161 VINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       161 ~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +..+...   ..-..+++||....|+.            .-+. +.+..+..|+++.+...
T Consensus        74 ~~r~~~~---~dl~g~~LViaATdD~~------------vN~~-I~~~a~~~~~lvn~vd~  118 (223)
T PRK05562         74 IKGNYDK---EFIKDKHLIVIATDDEK------------LNNK-IRKHCDRLYKLYIDCSD  118 (223)
T ss_pred             EeCCCCh---HHhCCCcEEEECCCCHH------------HHHH-HHHHHHHcCCeEEEcCC
Confidence            7644321   11145888887765432            1222 34444455777766543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.70  E-value=0.027  Score=50.78  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHh---cC-CCcEEEEEECChHHH-HHHHhhhhhccCCCCCCCeEEEEccHHH--HHhh--
Q 019699          101 PNPKTIFIMGGGEGSTAREILR---HK-TVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARA--ELES--  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~---~~-~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~--  171 (337)
                      -+|+.|+++|.-.|+.+...+.   .. +..+|.+||||-.-. ..+.+..|.      .+|++++.||..+  .+.+  
T Consensus        31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred             hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence            4789999999999888765543   22 567999999975432 222222222      3899999999852  2222  


Q ss_pred             -c--CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       172 -~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       .  .....+||.|+....     .+..  .-++. +...+++|+.+++.
T Consensus       105 ~~~~~~~~vlVilDs~H~~-----~hvl--~eL~~-y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  105 ELASPPHPVLVILDSSHTH-----EHVL--AELEA-YAPLVSPGSYLIVE  146 (206)
T ss_dssp             SS----SSEEEEESS---------SSHH--HHHHH-HHHT--TT-EEEET
T ss_pred             HhhccCCceEEEECCCccH-----HHHH--HHHHH-hCccCCCCCEEEEE
Confidence             1  245669999987422     1221  22333 46789999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.70  E-value=0.04  Score=55.52  Aligned_cols=129  Identities=19%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             EEcCccccccCChhhHHHHHHhH-HH-hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEE--EEECChHHHHHHHhh-hh
Q 019699           73 VIDGKLQSAEVDEFIYHESLVHP-AL-LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LV  147 (337)
Q Consensus        73 ~lDG~~q~~~~de~~Y~e~l~~~-~l-~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~--~VEid~~vi~~a~~~-f~  147 (337)
                      +-.|..|+... ...|.+.|..+ ++ .....-+.+|++|||.|+++..++.+. +..+.  .-|..+..++.|-+. ++
T Consensus        87 FPgggt~F~~G-a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvp  164 (506)
T PF03141_consen   87 FPGGGTMFPHG-ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVP  164 (506)
T ss_pred             eCCCCccccCC-HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcc
Confidence            33444554432 23566555432 33 133456889999999999999999863 33322  223444455555432 22


Q ss_pred             hccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       148 ~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ..-+.+           +.+-|.-..+.||+|=+.-. .+|.  +-..+    ++-+ +.|+|+|||.++.. ++|
T Consensus       165 a~~~~~-----------~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv~S-~pp  221 (506)
T PF03141_consen  165 AMIGVL-----------GSQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFVLS-GPP  221 (506)
T ss_pred             hhhhhh-----------ccccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEEec-CCc
Confidence            110011           01112223578999866544 4552  11122    2223 58999999998754 444

; GO: 0008168 methyltransferase activity

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.63  E-value=0.063  Score=48.71  Aligned_cols=105  Identities=17%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +...++.|||+--+.++.++.+..+...++++|+++.-++.|++++..+.   ..+++++..+||..-++. ....|+|+
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv   90 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV   90 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence            44556999999999999999998888999999999999999999998653   358999999999877754 35799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-.       ....+ -.++++. -++.|+.-=.++.|
T Consensus        91 IAG-------MGG~l-I~~ILee-~~~~l~~~~rlILQ  119 (226)
T COG2384          91 IAG-------MGGTL-IREILEE-GKEKLKGVERLILQ  119 (226)
T ss_pred             EeC-------CcHHH-HHHHHHH-hhhhhcCcceEEEC
Confidence            873       32223 3577777 67788754467776

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.57  E-value=0.11  Score=51.23  Aligned_cols=139  Identities=14%  Similarity=0.034  Sum_probs=93.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      +..|||++++.-|+=+.+++.. .....|.+-|.+..=+...+.++...+    -.+..+.+.|+++|-.+ ...+||-|
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fDRV  316 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFDRV  316 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccccee
Confidence            4579999999888655555443 234579999999999988888876442    35678889999987433 34589999


Q ss_pred             EEeCC-CCC--CCCCC-c------------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          180 IGDLA-DPI--EGGPC-Y------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       180 i~D~~-dp~--~~~p~-~------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      ++|++ +..  ..-+. .            .-+.++.+.. +-+.+++||++|-.+.+.    ..+.-..+++..-+-||
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL~K~p  391 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYALKKRP  391 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHHHhCC
Confidence            99997 321  00010 0            0122445555 468999999998765432    34455677777777889


Q ss_pred             ceeEEE
Q 019699          244 YVVPYS  249 (337)
Q Consensus       244 ~v~~~~  249 (337)
                      ++..-.
T Consensus       392 ~~kL~p  397 (460)
T KOG1122|consen  392 EVKLVP  397 (460)
T ss_pred             ceEecc
Confidence            887643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.53  E-value=0.13  Score=50.11  Aligned_cols=98  Identities=23%  Similarity=0.298  Sum_probs=65.5

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-hhcC-CceeEE
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRK-ESYDVI  179 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-~~~~-~~yDvI  179 (337)
                      ..+|+++|+|. |.++..+++..+..+|+++|++++=+++|++++.....  .++.-+    |...-+ ..+. ..+|++
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence            34899999996 44557777778889999999999999999997653210  111111    333333 3333 369999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |--+-.            ...++. +-+.++++|.+++-.
T Consensus       243 ie~~G~------------~~~~~~-ai~~~r~gG~v~~vG  269 (350)
T COG1063         243 IEAVGS------------PPALDQ-ALEALRPGGTVVVVG  269 (350)
T ss_pred             EECCCC------------HHHHHH-HHHHhcCCCEEEEEe
Confidence            855421            234455 568999999988664

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.52  E-value=0.11  Score=52.94  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCC----CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH----hhcC
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL----ESRK  173 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~----~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l----~~~~  173 (337)
                      ...+|++-.||+|++.....++..    ...+.+.|+++....+|+.++-.+...  . .+.+..+|-..-.    ....
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~-~~~i~~~dtl~~~~~~~~~~~  262 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--G-DANIRHGDTLSNPKHDDKDDK  262 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--c-cccccccccccCCcccccCCc
Confidence            446899999999998776665431    256899999999999999998765421  1 3455556543321    1134


Q ss_pred             CceeEEEEeCCCC---CCC--------------C-CCcCCch-HHHHHHHhccccCCCceEE
Q 019699          174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       174 ~~yDvIi~D~~dp---~~~--------------~-p~~~L~t-~ef~~~~~~~~L~p~Gvlv  216 (337)
                      ++||.|+.+++..   |..              + +...--. .-|+++ +...|+|+|...
T Consensus       263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aa  323 (489)
T COG0286         263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAA  323 (489)
T ss_pred             cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEE
Confidence            7799999999843   110              1 1111112 468888 789999988433

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.50  E-value=0.026  Score=53.76  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             CCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH----HHHHhhcCCcee
Q 019699          103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~----~~~l~~~~~~yD  177 (337)
                      .-++||||+|.-++ +.-..+.+ .=++++.|||+..++.|++....+..  -..+++++...-    ..-+....++||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence            46899999998765 33333444 46899999999999999999876521  257888876532    222333357899


Q ss_pred             EEEEeCCC
Q 019699          178 VIIGDLAD  185 (337)
Q Consensus       178 vIi~D~~d  185 (337)
                      +.+++++.
T Consensus       180 ftmCNPPF  187 (299)
T PF05971_consen  180 FTMCNPPF  187 (299)
T ss_dssp             EEEE----
T ss_pred             EEecCCcc
Confidence            99999873

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.48  E-value=0.1  Score=53.40  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--CCCCCCC-----eEEEEccHH----HHH
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPR-----LELVINDAR----AEL  169 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~d~r-----v~v~~~D~~----~~l  169 (337)
                      .+.+|+++|+|.-+ .+...++..+. +|+++|.+++..+.+++.-....  +..++..     .+....|..    +.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            58999999999655 45566666654 79999999999999998421100  0000000     011111211    111


Q ss_pred             hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+..+.+|+||.-...|.  .++..+++++.     -+.++|||+++.-
T Consensus       243 ~~~~~gaDVVIetag~pg--~~aP~lit~~~-----v~~mkpGgvIVdv  284 (509)
T PRK09424        243 AEQAKEVDIIITTALIPG--KPAPKLITAEM-----VASMKPGSVIVDL  284 (509)
T ss_pred             HhccCCCCEEEECCCCCc--ccCcchHHHHH-----HHhcCCCCEEEEE
Confidence            221246999998776554  22234545443     4568899988754

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.45  E-value=0.0049  Score=55.53  Aligned_cols=106  Identities=22%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .|....|.|+|||++.++..+-.   ..+|...|+-+                 .+++  ++..|... +.-.++..|++
T Consensus        70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~  126 (219)
T PF05148_consen   70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA  126 (219)
T ss_dssp             S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred             cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence            45567899999999999977542   23577766632                 1343  55566532 33345889999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe-CCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ-AGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~-~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      |..++--     ...  -.+|+++ +.|+|++||.|.+- ..|-  +.   ......+.+++.
T Consensus       127 VfcLSLM-----GTn--~~~fi~E-A~RvLK~~G~L~IAEV~SR--f~---~~~~F~~~~~~~  176 (219)
T PF05148_consen  127 VFCLSLM-----GTN--WPDFIRE-ANRVLKPGGILKIAEVKSR--FE---NVKQFIKALKKL  176 (219)
T ss_dssp             EEES--------SS---HHHHHHH-HHHHEEEEEEEEEEEEGGG---S----HHHHHHHHHCT
T ss_pred             EEEhhhh-----CCC--cHHHHHH-HHheeccCcEEEEEEeccc--Cc---CHHHHHHHHHHC
Confidence            9988621     111  1478998 89999999988764 2221  22   234455566655

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.35  E-value=0.074  Score=48.84  Aligned_cols=98  Identities=19%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD  177 (337)
                      ..+.+.+|+||..+|+++--+++. +..+|.+||.--.-+..--         -.|||+.++..-=..++..  ..+.-|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kL---------R~d~rV~~~E~tN~r~l~~~~~~~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKL---------RNDPRVIVLERTNVRYLTPEDFTEKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhH---------hcCCcEEEEecCChhhCCHHHcccCCC
Confidence            467899999999999999998885 6899999998654333221         1478988776544445433  235789


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +|++|.+.-.       |  ...+-. +...|+|+|-++.
T Consensus       147 ~~v~DvSFIS-------L--~~iLp~-l~~l~~~~~~~v~  176 (245)
T COG1189         147 LIVIDVSFIS-------L--KLILPA-LLLLLKDGGDLVL  176 (245)
T ss_pred             eEEEEeehhh-------H--HHHHHH-HHHhcCCCceEEE
Confidence            9999986311       1  122333 4566777775554

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=95.33  E-value=0.026  Score=56.92  Aligned_cols=80  Identities=23%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC----Cc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~----~~  175 (337)
                      .+..+-+||+.||+|.++..++++  +.+|.+||++|..++-|+++-..+.    -.+.++|.+-+.+-+....    ..
T Consensus       381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~  454 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDS  454 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCC
Confidence            356688999999999999998875  6899999999999999999866542    3578999996666544321    23


Q ss_pred             ee-EEEEeCCC
Q 019699          176 YD-VIIGDLAD  185 (337)
Q Consensus       176 yD-vIi~D~~d  185 (337)
                      =+ +.|+|++-
T Consensus       455 ~~~v~iiDPpR  465 (534)
T KOG2187|consen  455 ETLVAIIDPPR  465 (534)
T ss_pred             CceEEEECCCc
Confidence            34 77888763

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.26  E-value=0.05  Score=45.84  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=40.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHh-----cCCCcEEEEEECChHHHHHHHhhhh
Q 019699          101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~-----~~~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      .++..|+|+|+|-|.+++.++.     . +..+|++||.++..++.+++...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHH
Confidence            5678999999999999999888     5 46799999999999999988754

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=95.25  E-value=0.063  Score=56.24  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEE---EEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH------------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA------------  165 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~---~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~------------  165 (337)
                      ..++.+|..|=|+|++++.+++.++..++.   ..|++.....-+.-.-|..-....+.+-+++..|-            
T Consensus       321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~  400 (675)
T PF14314_consen  321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE  400 (675)
T ss_pred             CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence            456889999999999999999998888876   56776666555443332211112233444444332            


Q ss_pred             -HHHHh----hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       166 -~~~l~----~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                       -+|..    +..-++|+|++|.-.... .. ....+.-.-+. +.+.|.++|.+++-+.-.. ....  -..++..+..
T Consensus       401 TW~YF~~l~~~~~~~idLiv~DmEV~d~-~~-~~kIe~~l~~~-~~~ll~~~gtLIfKTYlt~-l~~~--~~~il~~lg~  474 (675)
T PF14314_consen  401 TWKYFVSLKKQHNLSIDLIVMDMEVRDD-SI-IRKIEDNLRDY-VHSLLEEPGTLIFKTYLTR-LLSP--DYNILDLLGR  474 (675)
T ss_pred             HHHHHHHHHhhcCCcccEEEEeceecCh-HH-HHHHHHHHHHH-HHHhcCCCcEEEEehhHhh-hhcc--hhhHHHHHHh
Confidence             12222    235679999999852211 10 01111111122 4567899999998762111 1111  2357788999


Q ss_pred             hcCceeEEEeeccccCCceEEEEEec
Q 019699          241 VFKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       241 vF~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      .|+.|..+.+..-+.-..=.++++++
T Consensus       475 ~F~~V~l~qT~~SSs~TSEVYlv~~~  500 (675)
T PF14314_consen  475 YFKSVELVQTQFSSSFTSEVYLVFQK  500 (675)
T ss_pred             hcCceEEEECCCCCCCceEEEEEEec
Confidence            99999988765443322224677765

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.23  E-value=0.14  Score=48.03  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             CCCeEEEEecchh--HHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCC--eEEEEccHHH---HHhh--
Q 019699          102 NPKTIFIMGGGEG--STAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--LELVINDARA---ELES--  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G--~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~r--v~v~~~D~~~---~l~~--  171 (337)
                      .-+..|+||+|-=  ....++++. .+..+|+.||.||.++.-++..+..      +++  ..++.+|.++   .|..  
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~  141 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE  141 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence            5689999999943  345666542 5679999999999999999987754      344  8999999874   2331  


Q ss_pred             c------CCceeEEEEeCCC--CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          172 R------KESYDVIIGDLAD--PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       172 ~------~~~yDvIi~D~~d--p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .      ++..=++++....  +....|      ....+. +.+.|.||..|++...
T Consensus       142 ~~~~lD~~rPVavll~~vLh~v~D~~dp------~~iv~~-l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  142 VRGLLDFDRPVAVLLVAVLHFVPDDDDP------AGIVAR-LRDALAPGSYLAISHA  191 (267)
T ss_dssp             HHCC--TTS--EEEECT-GGGS-CGCTH------HHHHHH-HHCCS-TT-EEEEEEE
T ss_pred             HHhcCCCCCCeeeeeeeeeccCCCccCH------HHHHHH-HHHhCCCCceEEEEec
Confidence            1      2333355554432  111122      467777 7899999999987653

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.18  E-value=0.066  Score=49.81  Aligned_cols=117  Identities=22%  Similarity=0.255  Sum_probs=71.7

Q ss_pred             ceEEEEcCccccccCCh------------hhHHHHHHhHHH--------------hcCCCCCeEEEEecchhHHHHHHHh
Q 019699           69 GKALVIDGKLQSAEVDE------------FIYHESLVHPAL--------------LHHPNPKTIFIMGGGEGSTAREILR  122 (337)
Q Consensus        69 G~~L~lDG~~q~~~~de------------~~Y~e~l~~~~l--------------~~~~~p~~VLiIG~G~G~~~~~ll~  122 (337)
                      ||.=+||..+.+++.++            ..||+-...-..              -..+...-|.++|||.+-++.   .
T Consensus       121 grFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~  197 (325)
T KOG3045|consen  121 GRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S  197 (325)
T ss_pred             cceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c
Confidence            56667787776655422            257764422111              012344568889999998886   1


Q ss_pred             cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH
Q 019699          123 HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE  202 (337)
Q Consensus       123 ~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~  202 (337)
                      .  -..|...|+-+                   .+-+++..|.++ +.-.+++.|+++..++-     +...+  .+|+.
T Consensus       198 ~--~~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV~CLSL-----Mgtn~--~df~k  248 (325)
T KOG3045|consen  198 E--RHKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAVFCLSL-----MGTNL--ADFIK  248 (325)
T ss_pred             c--ccceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEEeeHhh-----hcccH--HHHHH
Confidence            1  13455555421                   233456667665 44456889999988762     11233  48999


Q ss_pred             HHhccccCCCceEEEe
Q 019699          203 FVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       203 ~~~~~~L~p~Gvlv~~  218 (337)
                      . +.|+|++||.+-+-
T Consensus       249 E-a~RiLk~gG~l~IA  263 (325)
T KOG3045|consen  249 E-ANRILKPGGLLYIA  263 (325)
T ss_pred             H-HHHHhccCceEEEE
Confidence            9 89999999987653

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.09  E-value=0.063  Score=49.73  Aligned_cols=76  Identities=22%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.|.+|++||||.--++.-.....+...+.+.|||..++++...++...     .++.++.+.|...-  ......|+.+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~DlaL  176 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLAL  176 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchhh
Confidence            5689999999999888776666666679999999999999999998764     36778888875332  1346688887


Q ss_pred             EeC
Q 019699          181 GDL  183 (337)
Q Consensus       181 ~D~  183 (337)
                      +==
T Consensus       177 llK  179 (251)
T PF07091_consen  177 LLK  179 (251)
T ss_dssp             EET
T ss_pred             HHH
Confidence            653

>PRK11524 putative methyltransferase; Provisional

Probab=94.98  E-value=0.063  Score=50.71  Aligned_cols=66  Identities=20%  Similarity=0.213  Sum_probs=45.6

Q ss_pred             CCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCC---CCCCcC-------CchHHHHHHHhccccCCCceEEEeCC
Q 019699          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIE---GGPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       154 ~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~---~~p~~~-------L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .....+++.+|+.++++.. ++++|+|++|++-...   ......       -+..+++.. +.++|+|+|.+++...
T Consensus         5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS   81 (284)
T ss_pred             cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence            3456689999999998764 4789999999874220   001000       012467787 7999999999988753

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.79  E-value=0.16  Score=46.91  Aligned_cols=122  Identities=20%  Similarity=0.245  Sum_probs=78.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChH----HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~----vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~  173 (337)
                      +...+||-||++.|++...+..- .+..-|.+||.++.    .+.+|++          .+++--+++|++.--+-  .-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV  224 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV  224 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence            45689999999999999888775 34557889999874    4555554          46777789998642211  12


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCc---CCChhHHHHHHHHHhhh
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~---~~~~~~~~~i~~~l~~v  241 (337)
                      .-.|+||.|.+.|..... ..|       + +.--|+++|-+++..-.++.   ......|+.-.+.|++-
T Consensus       225 gmVDvIFaDvaqpdq~Ri-vaL-------N-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee  286 (317)
T KOG1596|consen  225 GMVDVIFADVAQPDQARI-VAL-------N-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEE  286 (317)
T ss_pred             eeEEEEeccCCCchhhhh-hhh-------h-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHh
Confidence            468999999986652110 111       2 35579999988876533321   12234566666666643

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.60  E-value=0.059  Score=50.52  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=77.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi  180 (337)
                      +.++|+++|--+-.....++.. -.++|.+||||+..+..-.+.....    .-.+++.+.-|.++-+.+ ..++||+++
T Consensus       152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence            4688999996554444444433 3489999999999999888765432    235688888898876644 358899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCC---ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~---Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      .|++...   ++.    +-|+.. =-..|+..   |.+-+....    .....-.++.+.+-.-|..|
T Consensus       227 TDPpeTi---~al----k~FlgR-GI~tLkg~~~aGyfgiT~re----ssidkW~eiQr~lIn~~gvV  282 (354)
T COG1568         227 TDPPETI---KAL----KLFLGR-GIATLKGEGCAGYFGITRRE----SSIDKWREIQRILINEMGVV  282 (354)
T ss_pred             cCchhhH---HHH----HHHHhc-cHHHhcCCCccceEeeeecc----ccHHHHHHHHHHHHHhcCee
Confidence            9986432   111    234433 23567766   555543211    11223345555555555543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.05  Score=47.19  Aligned_cols=106  Identities=22%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             CCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE---EEccHHHHHhhcCCceeE
Q 019699          103 PKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL---VINDARAELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v---~~~D~~~~l~~~~~~yDv  178 (337)
                      .++||++|+|--+++ ..++..-+...|..-|-+++.++-.++-...+. ...-.+..+   .+.-+..  .....+||+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~~aqs--q~eq~tFDi  106 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIWGAQS--QQEQHTFDI  106 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc-ccccceehhhHHHHhhhHH--HHhhCcccE
Confidence            589999999955544 445555678899999999999998887654331 011122222   2111111  122468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+..-.--      ..-+.....+. ++..|+|.|.-++.
T Consensus       107 IlaADClF------fdE~h~sLvdt-Ik~lL~p~g~Al~f  139 (201)
T KOG3201|consen  107 ILAADCLF------FDEHHESLVDT-IKSLLRPSGRALLF  139 (201)
T ss_pred             EEeccchh------HHHHHHHHHHH-HHHHhCcccceeEe
Confidence            98743200      01112334454 78999999986554

>PTZ00357 methyltransferase; Provisional

Probab=94.55  E-value=0.11  Score=54.21  Aligned_cols=104  Identities=19%  Similarity=0.343  Sum_probs=65.1

Q ss_pred             eEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCC------CCCeEEEEccHHHHHhhc--
Q 019699          105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------DPRLELVINDARAELESR--  172 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------d~rv~v~~~D~~~~l~~~--  172 (337)
                      .|+++|+|=|-+....++.    .-..+|.+||-||..+...+.... +...+.      +.+|+++..|.|.|-...  
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence            5899999999887666653    223479999999663333322211 111122      468999999999984221  


Q ss_pred             --------CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCC----Cce
Q 019699          173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI  214 (337)
Q Consensus       173 --------~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p----~Gv  214 (337)
                              -++.|+||+.+--..  | .++| +.|-+.. +.+.|++    +||
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSF--G-DNEL-SPECLDG-aQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSL--G-DNEL-SPECLEA-FHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhccc--c-cccC-CHHHHHH-HHHhhhhhcccccc
Confidence                    137999999885333  1 1233 4566665 5667765    776

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=94.55  E-value=0.42  Score=46.12  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC----CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE--EEccH---HHHHhh
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK----TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDA---RAELES  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~----~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v--~~~D~---~~~l~~  171 (337)
                      +.+..++++|+|+|.=.+.+++..    ...+.+.|||+.+.++.+.+.+...    .-|.+++  +.+|-   ..++..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~  150 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR  150 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence            455689999999998766555532    2357899999999999998887621    1366766  66654   445543


Q ss_pred             --cCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699          172 --RKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (337)
Q Consensus       172 --~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~  219 (337)
                        ......+|+.=.+ -.+    ...--...|++. +++ .|+|+|.|++-.
T Consensus       151 ~~~~~~~r~~~flGSsiGN----f~~~ea~~fL~~-~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       151 PENRSRPTTILWLGSSIGN----FSRPEAAAFLAG-FLATALSPSDSFLIGL  197 (319)
T ss_pred             ccccCCccEEEEeCccccC----CCHHHHHHHHHH-HHHhhCCCCCEEEEec
Confidence              1234555554332 111    111123478998 788 999999988754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.45  E-value=0.53  Score=40.27  Aligned_cols=143  Identities=20%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh----ccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +|.+||+|.++++....-.....+|++...+++.++..++.-..    ....+ .+++++ ..|..+.++    .-|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l-~~~i~~-t~dl~~a~~----~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKL-PENIKA-TTDLEEALE----DADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBE-ETTEEE-ESSHHHHHT----T-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCccc-Cccccc-ccCHHHHhC----cccEEE
Confidence            68999999887764433222347899999999888776664221    10011 134543 567666664    469999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC----
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA----  256 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~----  256 (337)
                      +-.+.         ..-+++++. ++..|+++=.++.-..  + + .......+.+.+++.++.-......-|++.    
T Consensus        75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~K--G-~-~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~  140 (157)
T PF01210_consen   75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATK--G-F-EPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIA  140 (157)
T ss_dssp             E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS---S-E-ETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHH
T ss_pred             ecccH---------HHHHHHHHH-HhhccCCCCEEEEecC--C-c-ccCCCccHHHHHHHHhhhcceEEeeCccHHHHHH
Confidence            88652         123688998 7889976666664432  1 1 111122333455556665433334557662    


Q ss_pred             --CceEEEEEecC
Q 019699          257 --DTWGWIMASDS  267 (337)
Q Consensus       257 --~~~~~~~as~~  267 (337)
                        ....+++||++
T Consensus       141 ~~~pt~~~~as~~  153 (157)
T PF01210_consen  141 EGKPTAVVIASKN  153 (157)
T ss_dssp             TT--EEEEEEESS
T ss_pred             cCCCeEEEEEecc
Confidence              13456777764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.40  E-value=0.21  Score=44.94  Aligned_cols=113  Identities=16%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh----ccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      -...+||||-|+++.++.-.+|..-|.+.||--.|.+-.++....    +.+.+ -+++.+....+..|+.+.  .++-+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence            468999999999999999999999999999999999988887542    11222 467888889999998764  34444


Q ss_pred             EEEEeCCCCCC--CCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~--~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      -++.-.+||..  .-....+.+...... ..-.|+++|++.+-
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~yti  182 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTI  182 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEE
Confidence            45555555531  111134555566666 56789999988764

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.16  E-value=0.49  Score=46.51  Aligned_cols=98  Identities=23%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.+|++||+|. |..+...++..+ .+|+++|.+++-.+.+.+.+..        .+.....+ .+.+.+.-..+|+||
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~-~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSN-AYEIEDAVKRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCC-HHHHHHHHccCCEEE
Confidence            567899999983 444455555554 4799999998876655543321        11111222 122332235689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      .-..-|....|  .+.+.+.++     .++++++++
T Consensus       236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv  264 (370)
T TIGR00518       236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV  264 (370)
T ss_pred             EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence            86643321123  567776544     368888765

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.13  E-value=0.062  Score=48.00  Aligned_cols=100  Identities=22%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE-
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG-  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~-  181 (337)
                      .|+||++|.|+|..+....+. +...|...|++|..++..+-+-..+     .-.+.+...|..-    .+..||+|+. 
T Consensus        80 gkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g----~~~~~Dl~Lag  149 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG----SPPAFDLLLAG  149 (218)
T ss_pred             cceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC----CCcceeEEEee
Confidence            699999999999998888775 5788999999999888887765544     2456777777532    4578999876 


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |.+...    ..+.   ....  .+..|+..|.-++ .+.|
T Consensus       150 Dlfy~~----~~a~---~l~~--~~~~l~~~g~~vl-vgdp  180 (218)
T COG3897         150 DLFYNH----TEAD---RLIP--WKDRLAEAGAAVL-VGDP  180 (218)
T ss_pred             ceecCc----hHHH---HHHH--HHHHHHhCCCEEE-EeCC
Confidence            555211    1111   1112  2556777886665 3344

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.05  E-value=3.8  Score=38.85  Aligned_cols=93  Identities=20%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -++|.+||+|.  +.+++.+.+.....+|++++.+++..+.+++. ..        ... ...+..+.+    +..|+||
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVI   71 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEE
Confidence            36899999985  33455555442224899999999888777653 11        001 122323333    4589999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +-.+...         ..++++. +...++++.+++ ..+
T Consensus        72 iavp~~~---------~~~v~~~-l~~~l~~~~iv~-dvg  100 (307)
T PRK07502         72 LCVPVGA---------SGAVAAE-IAPHLKPGAIVT-DVG  100 (307)
T ss_pred             ECCCHHH---------HHHHHHH-HHhhCCCCCEEE-eCc
Confidence            8875321         2455666 566788887654 444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.99  E-value=0.74  Score=43.56  Aligned_cols=174  Identities=17%  Similarity=0.143  Sum_probs=93.4

Q ss_pred             CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -.+|+++|+|  +|.+++.+.+......|+..|.+..-.+.+.+. ...     |...    .+   .........|+||
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~~----~~---~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DELT----VA---GLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----cccc----cc---hhhhhcccCCEEE
Confidence            3589999998  566777777655455678888888777776542 111     1100    01   1112235689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC---
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD---  257 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~---  257 (337)
                      +..|-.         .+.++.+. +...|++|-+++ -.++.        -..+++.+++..+....|...=|.+|.   
T Consensus        70 vavPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S~--------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~  130 (279)
T COG0287          70 VAVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGSV--------KSSVVEAMEKYLPGDVRFVGGHPMFGPEAD  130 (279)
T ss_pred             EeccHH---------HHHHHHHH-hcccCCCCCEEE-ecccc--------cHHHHHHHHHhccCCCeeEecCCCCCCccc
Confidence            997522         25678887 677888877664 54432        135566777776552123222244432   


Q ss_pred             ----ceEEEEEecCCC-C-CCHHHHHHHHHhccCCCceeeCHHHHHHhc----cCcHHHHHh
Q 019699          258 ----TWGWIMASDSPF-T-LSAEELDMKVKKNIKGENRYLDGKTISSSS----TLSKAVRKS  309 (337)
Q Consensus       258 ----~~~~~~as~~p~-~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f----~lP~~~~~~  309 (337)
                          .+.+++-+..+. + -...++.+-+.. ....+-+-+++.|-..+    .||-++.-.
T Consensus       131 ~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~-~ga~~v~~~~eeHD~~~a~vshLpH~~a~a  191 (279)
T COG0287         131 AGLFENAVVVLTPSEGTEKEWVEEVKRLWEA-LGARLVEMDAEEHDRVMAAVSHLPHAAALA  191 (279)
T ss_pred             ccccCCCEEEEcCCCCCCHHHHHHHHHHHHH-cCCEEEEcChHHHhHHHHHHHHHHHHHHHH
Confidence                122233332221 1 011222222222 23467888999987765    355554433

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.94  E-value=0.4  Score=46.51  Aligned_cols=92  Identities=22%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhhcCCce
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~~~~~y  176 (337)
                      .+.++|+++|.| -|.++..+++... .+|++++++++-.+.|++.-..          .++.   .|..+-++   +.+
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~~---~~~  230 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAVK---EIA  230 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHhH---hhC
Confidence            456899999987 3455677777555 8999999999999999986321          2222   23333333   459


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+||.-.. +.           .|-+  .-+.|+++|.+++-..
T Consensus       231 d~ii~tv~-~~-----------~~~~--~l~~l~~~G~~v~vG~  260 (339)
T COG1064         231 DAIIDTVG-PA-----------TLEP--SLKALRRGGTLVLVGL  260 (339)
T ss_pred             cEEEECCC-hh-----------hHHH--HHHHHhcCCEEEEECC
Confidence            99997765 21           2223  3468999999987653

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.74  E-value=0.43  Score=45.87  Aligned_cols=101  Identities=14%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      ....+||++|+|. |..+..+++-.+..+|+.+|+++.=+++||+ |+... .....+-. ..++.++-+++.  ...+|
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~-~~~~~~~~-~~~~~~~~v~~~~g~~~~d  244 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV-TDPSSHKS-SPQELAELVEKALGKKQPD  244 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE-Eeeccccc-cHHHHHHHHHhhccccCCC
Confidence            3568999999995 5555666677888999999999999999999 54321 00111111 334445555442  25689


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +.|--+-.    .+        -++. .-..|+.+|.+++
T Consensus       245 ~~~dCsG~----~~--------~~~a-ai~a~r~gGt~vl  271 (354)
T KOG0024|consen  245 VTFDCSGA----EV--------TIRA-AIKATRSGGTVVL  271 (354)
T ss_pred             eEEEccCc----hH--------HHHH-HHHHhccCCEEEE
Confidence            88854421    11        1222 3468999999554

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.73  E-value=0.28  Score=49.61  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=59.5

Q ss_pred             HhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699           93 VHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus        93 ~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      .+.|++..-+.++||+||||.-+.-  +.+++.  ..+|++|  |+++++-++++           ..+++++..+..  
T Consensus         2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~--   66 (457)
T PRK10637          2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFD--   66 (457)
T ss_pred             CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCC--
Confidence            3467777778899999999987664  344443  4577776  77777765543           246666664432  


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                       ...-+.+++||....|+.        .....++     ..+..|+++-...
T Consensus        67 -~~dl~~~~lv~~at~d~~--------~n~~i~~-----~a~~~~~lvN~~d  104 (457)
T PRK10637         67 -ESLLDTCWLAIAATDDDA--------VNQRVSE-----AAEARRIFCNVVD  104 (457)
T ss_pred             -hHHhCCCEEEEECCCCHH--------HhHHHHH-----HHHHcCcEEEECC
Confidence             221245788887765432        1233333     3445688874443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.73  E-value=0.75  Score=39.96  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             CCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      -..++|+++|-|.-+-  ++.+...  ..+|+++|+||  +.+.+.+..         .+++.  .    +.+.-...|+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DP--i~alqA~~d---------Gf~v~--~----~~~a~~~adi   81 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDP--IRALQAAMD---------GFEVM--T----LEEALRDADI   81 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSH--HHHHHHHHT---------T-EEE-------HHHHTTT-SE
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECCh--HHHHHhhhc---------CcEec--C----HHHHHhhCCE
Confidence            3578999999997543  4444443  47999999999  444444332         12322  2    2222356898


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ||.-.-      . ....+.+.|+.     |+ +|.++.|.++.
T Consensus        82 ~vtaTG------~-~~vi~~e~~~~-----mk-dgail~n~Gh~  112 (162)
T PF00670_consen   82 FVTATG------N-KDVITGEHFRQ-----MK-DGAILANAGHF  112 (162)
T ss_dssp             EEE-SS------S-SSSB-HHHHHH-----S--TTEEEEESSSS
T ss_pred             EEECCC------C-ccccCHHHHHH-----hc-CCeEEeccCcC
Confidence            887642      2 24456666664     44 56677898754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=93.57  E-value=0.058  Score=49.05  Aligned_cols=60  Identities=17%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      ..=|..||-|.|++.+.++.. +.+++.+||+|+..+.-.+..-..     .+.++.+|++|+..|
T Consensus        51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF  110 (326)
T ss_pred             cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence            346889999999999999986 578999999999988766543221     246899999999766

>PRK13699 putative methylase; Provisional

Probab=93.29  E-value=0.2  Score=45.93  Aligned_cols=61  Identities=10%  Similarity=0.133  Sum_probs=42.1

Q ss_pred             eEEEEccHHHHHhhc-CCceeEEEEeCCCCC--CC--C-CC-cC---CchHHHHHHHhccccCCCceEEEeC
Q 019699          158 LELVINDARAELESR-KESYDVIIGDLADPI--EG--G-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       158 v~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~--~~--~-p~-~~---L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+++.+|+.+.++.. +++.|+||.|++-..  ..  + .. ..   -+..++++. +.++|+|||.+++..
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~   72 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY   72 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence            368899999999775 588999999997421  00  1 00 01   112456677 689999999988754

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.29  E-value=0.5  Score=45.34  Aligned_cols=97  Identities=18%  Similarity=0.308  Sum_probs=58.5

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..++||++|+|. |..+..+++..+..+|.+++.+++-.+.++++ +... .+ +.+    ..|..++++. .+.+|+||
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~-vi-~~~----~~~~~~~~~~-~g~~D~vi  240 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK-LV-NPQ----NDDLDHYKAE-KGYFDVSF  240 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE-Ee-cCC----cccHHHHhcc-CCCCCEEE
Confidence            467999998753 34456667766666899999999999999884 2210 01 110    1222333332 24599887


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       |...    .+       ..++. +.+.|+++|.++.-.
T Consensus       241 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 -EVSG----HP-------SSINT-CLEVTRAKGVMVQVG  266 (343)
T ss_pred             -ECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence             5431    11       22344 457899999988653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.23  E-value=1.5  Score=43.98  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=68.1

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..++|+++|.|.-+. ....++..+ .+|+++|+|+.-...+... +          +++.  +..+.+    +..|+||
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVVI  272 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIFV  272 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEEE
Confidence            578999999986443 233344444 5899999999654443321 1          1111  222333    3589987


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG  260 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~  260 (337)
                      .-.      +. ...++.+     ..+.+++|++++ |.+....-.+.+.+.+.....+++=|++.-|..  |.  +...
T Consensus       273 ~aT------G~-~~vI~~~-----~~~~mK~Gaili-NvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~--~~--g~~i  335 (425)
T PRK05476        273 TAT------GN-KDVITAE-----HMEAMKDGAILA-NIGHFDNEIDVAALEELAVKWREIKPQVDEYTL--PD--GKRI  335 (425)
T ss_pred             ECC------CC-HHHHHHH-----HHhcCCCCCEEE-EcCCCCCccChHHHhhcCcceeecCCCceEEEe--CC--CCEE
Confidence            543      11 1233332     235688888765 665432112222233222233455677766654  21  2334


Q ss_pred             EEEEecCC
Q 019699          261 WIMASDSP  268 (337)
Q Consensus       261 ~~~as~~p  268 (337)
                      ++++..++
T Consensus       336 ~lLa~Grl  343 (425)
T PRK05476        336 ILLAEGRL  343 (425)
T ss_pred             EEEeCCcc
Confidence            55565443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.22  E-value=0.4  Score=40.65  Aligned_cols=107  Identities=24%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC-ceeEEEEeCC-CCCCCC--CCcCCchHHHHHH
Q 019699          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF  203 (337)
Q Consensus       128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~-dp~~~~--p~~~L~t~ef~~~  203 (337)
                      +|.+.||.++.++.+++.+....   ...|++++.+.=....+-.+. +.|+++-++- -|..+-  .-..-.|..-++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            58899999999999999886432   124899988765443332334 8999999985 232110  0011234556776


Q ss_pred             HhccccCCCceEEEeC--CCCCcCCChhHHHHHHHHHhhh
Q 019699          204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       204 ~~~~~L~p~Gvlv~~~--~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                       +.+.|++||++++-.  |+++   ..+....+.+.+++.
T Consensus        78 -al~lL~~gG~i~iv~Y~GH~g---G~eE~~av~~~~~~L  113 (140)
T PF06962_consen   78 -ALELLKPGGIITIVVYPGHPG---GKEESEAVEEFLASL  113 (140)
T ss_dssp             -HHHHEEEEEEEEEEE--STCH---HHHHHHHHHHHHHTS
T ss_pred             -HHHhhccCCEEEEEEeCCCCC---CHHHHHHHHHHHHhC
Confidence             678999999887654  3331   233444555555544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.03  E-value=0.91  Score=40.87  Aligned_cols=96  Identities=15%  Similarity=0.229  Sum_probs=56.0

Q ss_pred             HHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699           96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus        96 ~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      |++..-..++||+||+|.=+.  ++.+++.  ..+|++|+.+  +++.++++           ..+++++.++...-   
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~---   65 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD---   65 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH---
Confidence            444445678999999996554  4555553  4688888544  44444432           23677777664321   


Q ss_pred             cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .-..+|+||..+.++.       + ....++.     .+..|+++-.++
T Consensus        66 dl~~~~lVi~at~d~~-------l-n~~i~~~-----a~~~~ilvn~~d  101 (205)
T TIGR01470        66 ILEGAFLVIAATDDEE-------L-NRRVAHA-----ARARGVPVNVVD  101 (205)
T ss_pred             HhCCcEEEEECCCCHH-------H-HHHHHHH-----HHHcCCEEEECC
Confidence            1246999998765431       1 2233343     345688874443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PHA01634 hypothetical protein

Probab=92.91  E-value=0.22  Score=41.63  Aligned_cols=75  Identities=20%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -..++|++||++-|.++..++.. +.+.|.++|.++...+..++....+.-  -|..+-..     +| ...=+.||+-.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~~~-----eW-~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVMKG-----EW-NGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eeceeecc-----cc-cccCCCcceEE
Confidence            46789999999999999988864 689999999999999999887654310  01111100     12 11226799999


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      +|.-
T Consensus        98 iDCe  101 (156)
T PHA01634         98 MDCE  101 (156)
T ss_pred             EEcc
Confidence            9974

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=92.84  E-value=1.1  Score=43.78  Aligned_cols=111  Identities=19%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc-HHHHHhhc--CCce
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D-~~~~l~~~--~~~y  176 (337)
                      .+..+||++|+|. |..+..+++..+..++++++.+++..+.++++...       .-+.....| ..+-+...  .+.+
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~  255 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP  255 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence            4567899999887 77788888877666799999999999999986432       111111121 33333322  2469


Q ss_pred             eEEEEeCCCCCCCCCCcCC---------chHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKL---------YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L---------~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|+--........+..++         .+..-++. +.+.|+++|.++.-.
T Consensus       256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g  306 (386)
T cd08283         256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG  306 (386)
T ss_pred             CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence            9887533211000000000         01233454 567899999987653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=92.84  E-value=0.11  Score=48.19  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=78.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcC------------CCcEEEEEECChHHHHHHHh-------------hhhh-c-------
Q 019699          103 PKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKS-------------YLVV-N-------  149 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~------------~~~~v~~VEid~~vi~~a~~-------------~f~~-~-------  149 (337)
                      .-.|+++|.|+|.....+.+..            ....++.+|.+|....-++.             ..+. .       
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            3467889999997766555432            22356788888754332221             1110 0       


Q ss_pred             cCCC-CCCCeEEEEccHHHHHhhcCC---ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          150 KEAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       150 ~~~~-~d~rv~v~~~D~~~~l~~~~~---~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ...+ ..-.+.++++|+.+.+.....   ++|+.+.|.+.|.. .|  .+++.|++.. ++++..+||.++..+
T Consensus       139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s  208 (252)
T COG4121         139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA  208 (252)
T ss_pred             HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence            0112 234678999999999887766   79999999998874 44  7899999998 899999999998754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.83  E-value=0.51  Score=43.31  Aligned_cols=140  Identities=22%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhc------CCCc---EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------
Q 019699          102 NPKTIFIMGGGEGSTAREILRH------KTVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------  166 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~------~~~~---~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------  166 (337)
                      .-+||.++++.-|.+...+.+.      ...+   .|++||+.+.+        |       -+.|.-+.+|.-      
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae  105 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE  105 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence            3579999999999887655542      1112   39999996621        1       245666666652      


Q ss_pred             HHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHH--------HhccccCCCceEEEeCCCCCcCCChhHHHHHHHH
Q 019699          167 AELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF--------VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT  237 (337)
Q Consensus       167 ~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~--------~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~  237 (337)
                      ..++.. .++-|+|++|.. |...|. ..+  .||.+.        +...+|+|||.|+...      +..+...-++..
T Consensus       106 ~Ii~hfggekAdlVvcDGA-PDvTGl-Hd~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi------fRg~~tslLysq  175 (294)
T KOG1099|consen  106 AIIEHFGGEKADLVVCDGA-PDVTGL-HDL--DEYVQAQLLLAALNIATCVLKPGGSFVAKI------FRGRDTSLLYSQ  175 (294)
T ss_pred             HHHHHhCCCCccEEEeCCC-CCcccc-ccH--HHHHHHHHHHHHHHHHhheecCCCeeehhh------hccCchHHHHHH
Confidence            223332 368999999986 322232 111  123221        1357899999999764      223334566788


Q ss_pred             HhhhcCceeEEEeeccccC-CceEEEEEecC
Q 019699          238 LRQVFKYVVPYSAHIPSFA-DTWGWIMASDS  267 (337)
Q Consensus       238 l~~vF~~v~~~~~~vP~~~-~~~~~~~as~~  267 (337)
                      |+..|..|..+.-. .+.. ..-.|++|..-
T Consensus       176 l~~ff~kv~~~KPr-sSR~sSiEaFvvC~~~  205 (294)
T KOG1099|consen  176 LRKFFKKVTCAKPR-SSRNSSIEAFVVCLGY  205 (294)
T ss_pred             HHHHhhceeeecCC-ccccccceeeeeeccc
Confidence            99999988766411 1111 23458999753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.72  E-value=1.1  Score=45.96  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=62.5

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC--------CCCeEEEEccHHH----H
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--------d~rv~v~~~D~~~----~  168 (337)
                      .+.+||++|+|.-+. +..+++..+ ..|+++|.+++..+.+++. +...-..+        +.-.+..-.|..+    -
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            468999999986544 445555554 5699999999999998873 32100000        0011122122111    1


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      +.+.-+.+|+||.-.--|.  .++..|.+++-.     +.++||++++
T Consensus       241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv-----~~MKpGsvIV  281 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMV-----DSMKAGSVIV  281 (511)
T ss_pred             HHHHhCCCCEEEECcccCC--CCCCeeehHHHH-----hhCCCCCEEE
Confidence            2222366999987775444  334478887643     4688998876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.69  E-value=1.6  Score=41.09  Aligned_cols=147  Identities=20%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~  183 (337)
                      +|+++-+|.|++..-+.+. +...+.++|+|+...+.-+.+|+           .+..+|..+.-... ++..|+|+.-+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence            6899999999998877765 35678899999999999888874           67788876653321 11599999887


Q ss_pred             C-CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCceeEEEeec
Q 019699          184 A-DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI  252 (337)
Q Consensus       184 ~-dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v~~~~~~v  252 (337)
                      + .+.. .+       +-..|+ .+|++. + +.++|.-+++=|+.  +...  ....+..+.+.|.+.-=.+.......
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~--~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna  144 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVP--GLLSSKNGEVFKEILEELEELGYNVQWRVLNA  144 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEG--GGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred             CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccc--eeeccccccccccccccccccceeehhccccH
Confidence            6 2221 11       112233 467775 4 56889887776652  2121  22457777777776521233333333


Q ss_pred             cccC----CceEEEEEecCC
Q 019699          253 PSFA----DTWGWIMASDSP  268 (337)
Q Consensus       253 P~~~----~~~~~~~as~~p  268 (337)
                      -.||    ..-.|++|++..
T Consensus       145 ~~yGvPQ~R~R~fivg~r~~  164 (335)
T PF00145_consen  145 ADYGVPQNRERVFIVGIRKD  164 (335)
T ss_dssp             GGGTSSBE-EEEEEEEEEGG
T ss_pred             hhCCCCCceeeEEEEEECCC
Confidence            3443    234588888653

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.57  E-value=1.1  Score=42.97  Aligned_cols=98  Identities=19%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             CCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.+|.+||+|-- .-+..++-- -...|+..|+|.+=++.....|.        .|+++.......+-+ .-.++|++|
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee-~v~~aDlvI  236 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEE-AVKKADLVI  236 (371)
T ss_pred             CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHH-HhhhccEEE
Confidence            4678999999853 334444433 35789999999988877766553        467777777655533 336799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      .-.--|-...  ..|.++|..     +.++||++++
T Consensus       237 gaVLIpgaka--PkLvt~e~v-----k~MkpGsViv  265 (371)
T COG0686         237 GAVLIPGAKA--PKLVTREMV-----KQMKPGSVIV  265 (371)
T ss_pred             EEEEecCCCC--ceehhHHHH-----HhcCCCcEEE
Confidence            8776554323  378777643     4689999886

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.34  E-value=0.42  Score=41.41  Aligned_cols=104  Identities=20%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-C--CCCCeEEEEccHHHH---------
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE---------  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~--~d~rv~v~~~D~~~~---------  168 (337)
                      .|.+|+++|+|.-+ -+.++++..+ .+++..|..++..+..+..+...-.. .  ...+-.   -|-..|         
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES   94 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence            57899999999544 3555665554 68999999999888777654321000 0  000000   111111         


Q ss_pred             -HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       169 -l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                       +.+.-..+|+||+...-+..  .+..|+|++-.+.     |+++-+++
T Consensus        95 ~f~~~i~~~d~vI~~~~~~~~--~~P~lvt~~~~~~-----m~~gsvIv  136 (168)
T PF01262_consen   95 NFAEFIAPADIVIGNGLYWGK--RAPRLVTEEMVKS-----MKPGSVIV  136 (168)
T ss_dssp             HHHHHHHH-SEEEEHHHBTTS--S---SBEHHHHHT-----SSTTEEEE
T ss_pred             HHHHHHhhCcEEeeecccCCC--CCCEEEEhHHhhc-----cCCCceEE
Confidence             11122569999987754432  2348899876543     55555544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.31  E-value=4  Score=40.71  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CCCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...++|+++|.|.-+.. ...++.. ..+|+++|.||.-...++.. +          .++.  +..+.+    +..|+|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV  254 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF  254 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence            35789999999975443 3344444 45899999999654444321 1          1111  112223    346998


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      |.-.      +. ..+++.+.     ...+++|++++ |.+....-.+.+.+.+....-+.+-+++..|.
T Consensus       255 ItaT------G~-~~vI~~~~-----~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~  311 (406)
T TIGR00936       255 ITAT------GN-KDVIRGEH-----FENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYI  311 (406)
T ss_pred             EECC------CC-HHHHHHHH-----HhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence            7532      11 23344333     34578888765 65543211233333333333344556666665

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.24  E-value=0.92  Score=41.26  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=69.0

Q ss_pred             hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHH--HHhcCCCcEEEEEECChHHHHHHHhhhhhcc-C------------
Q 019699           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E------------  151 (337)
Q Consensus        87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~--ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~-~------------  151 (337)
                      ++++.|.+   +....|-.+-+-+||+|.++.-  +++......|.+-|||++++++|++++.+.. .            
T Consensus        39 i~qR~l~~---l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~  115 (246)
T PF11599_consen   39 IFQRALHY---LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL  115 (246)
T ss_dssp             HHHHHHCT---SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence            44555432   2235677899999999987643  4444556789999999999999999875321 0            


Q ss_pred             ------------------------CC-CCCCeEEEEccHHHHHh----hcCCceeEEEEeCCCC----CCC-CCCcCCch
Q 019699          152 ------------------------AF-SDPRLELVINDARAELE----SRKESYDVIIGDLADP----IEG-GPCYKLYT  197 (337)
Q Consensus       152 ------------------------~~-~d~rv~v~~~D~~~~l~----~~~~~yDvIi~D~~dp----~~~-~p~~~L~t  197 (337)
                                              .. ......+...|..+.-.    .....-|+||.|++..    |.. ++  .-=.
T Consensus       116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~--~~p~  193 (246)
T PF11599_consen  116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS--GGPV  193 (246)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HHHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC--CCcH
Confidence                                    00 12335677777665321    2244579999999843    322 11  1123


Q ss_pred             HHHHHHHhccccCCCceEEE
Q 019699          198 KSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       198 ~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ..++.. +...|.+++|+++
T Consensus       194 ~~ml~~-l~~vLp~~sVV~v  212 (246)
T PF11599_consen  194 AQMLNS-LAPVLPERSVVAV  212 (246)
T ss_dssp             HHHHHH-HHCCS-TT-EEEE
T ss_pred             HHHHHH-HHhhCCCCcEEEE
Confidence            568887 8999977778777

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=92.19  E-value=1.2  Score=43.49  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc--CC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH----H---
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----L---  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~--~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~----l---  169 (337)
                      .+..+||++++.-|+=+..+++.  ..  ...|++=|.|+.=....+.-...    +.++.+.+...|+-.|    +   
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~----l~~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR----LPSPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc----cCCcceeeecccceeccccccccC
Confidence            56689999999999877666653  22  23799999999866555443321    1245555555555332    1   


Q ss_pred             -hhcCCceeEEEEeCC---CCCC-CCC-------------CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHH
Q 019699          170 -ESRKESYDVIIGDLA---DPIE-GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF  231 (337)
Q Consensus       170 -~~~~~~yDvIi~D~~---dp~~-~~p-------------~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~  231 (337)
                       ......||-|++|.+   |... ..+             .-+......+.. .-+.|++||.+|-.+.+-+..-+....
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV  308 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV  308 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence             112357999999997   2110 000             001223345565 468999999998765432212333444


Q ss_pred             HHHHHHHhhhcCc
Q 019699          232 SCIYNTLRQVFKY  244 (337)
Q Consensus       232 ~~i~~~l~~vF~~  244 (337)
                      +.+++.+...|+-
T Consensus       309 ~~~L~~~~~~~~l  321 (375)
T KOG2198|consen  309 QEALQKVGGAVEL  321 (375)
T ss_pred             HHHHHHhcCcccc
Confidence            5555444444443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.90  E-value=0.95  Score=45.69  Aligned_cols=106  Identities=19%  Similarity=0.269  Sum_probs=70.0

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      .++|.+|||.-.+...+.+- +...|+.+|+++.+++....--.     -..+-.++...|...-. -.++.||+||.-.
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-----~~~~~~~~~~~d~~~l~-fedESFdiVIdkG  122 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-----KERPEMQMVEMDMDQLV-FEDESFDIVIDKG  122 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-----cCCcceEEEEecchhcc-CCCcceeEEEecC
Confidence            48999999998888777764 56789999999999988765322     13466778888865432 2357899988655


Q ss_pred             C-CCCCCCCCcCC---chHHHHHHHhccccCCCceEEE
Q 019699          184 A-DPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       184 ~-dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      + |.....-...+   .-...+.. +.+.|+++|.++.
T Consensus       123 tlDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~s  159 (482)
T KOG2352|consen  123 TLDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYIS  159 (482)
T ss_pred             ccccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEE
Confidence            4 21111100112   22234555 6899999998653

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=91.60  E-value=1.6  Score=40.82  Aligned_cols=154  Identities=16%  Similarity=0.256  Sum_probs=72.8

Q ss_pred             hhHHHHHHhHHH--hcCCCCCeEEEEecchh--H-HHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe
Q 019699           86 FIYHESLVHPAL--LHHPNPKTIFIMGGGEG--S-TAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL  158 (337)
Q Consensus        86 ~~Y~e~l~~~~l--~~~~~p~~VLiIG~G~G--~-~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv  158 (337)
                      .-|+++.-.+.-  +..|...|||.+|+|+-  . -+..++++  |...-++-.||++-|-                +--
T Consensus        43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------Da~  106 (299)
T PF06460_consen   43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------DAD  106 (299)
T ss_dssp             HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSS
T ss_pred             HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc----------------ccC
Confidence            346665443311  22477789999999853  2 23334443  3455566666644211                223


Q ss_pred             EEEEccHHHHHhhcCCceeEEEEeCCCCCCCCC-CcCCchHHHHHH---HhccccCCCceEEEeCCCCCcCCChhHHHHH
Q 019699          159 ELVINDARAELESRKESYDVIIGDLADPIEGGP-CYKLYTKSFYEF---VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI  234 (337)
Q Consensus       159 ~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p-~~~L~t~ef~~~---~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i  234 (337)
                      ..+.+|.+.|.  .+.+||+||+|..|+....- ...--...||..   ++++.|+-||-+++...--+ | +.+     
T Consensus       107 ~~~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S-w-~~~-----  177 (299)
T PF06460_consen  107 QSIVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS-W-NAQ-----  177 (299)
T ss_dssp             EEEES-GGGEE--ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----HH-----
T ss_pred             CceeccccccC--CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc-c-cHH-----
Confidence            56778887774  35789999999997542110 011111223332   25789999999988763221 3 232     


Q ss_pred             HHHHhhhcCceeEEEeeccccCCceEEEEEe
Q 019699          235 YNTLRQVFKYVVPYSAHIPSFADTWGWIMAS  265 (337)
Q Consensus       235 ~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as  265 (337)
                      +-.|.+.|.....|.+.+-+-.. =.|+++-
T Consensus       178 Lyel~~~F~~wt~FcT~VNtSSS-EaFLigi  207 (299)
T PF06460_consen  178 LYELMGYFSWWTCFCTAVNTSSS-EAFLIGI  207 (299)
T ss_dssp             HHHHHTTEEEEEEEEEGGGTTSS--EEEEEE
T ss_pred             HHHHHhhcccEEEEecccCcccc-ceeEEee
Confidence            23566678888777766654322 3466664

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.57  E-value=2.5  Score=37.38  Aligned_cols=110  Identities=25%  Similarity=0.306  Sum_probs=55.7

Q ss_pred             eEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccC--------CCCCCCeEEEEccHHHHHhhcC
Q 019699          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKE--------AFSDPRLELVINDARAELESRK  173 (337)
Q Consensus       105 ~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~--------~~~d~rv~v~~~D~~~~l~~~~  173 (337)
                      +|-++|+|==++  +..+++.  .-+|+++|+|++.++..++- .+....        .....|+++. .|..+.+    
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            789999994433  3444443  37899999999999887753 122110        0012344332 3444333    


Q ss_pred             CceeEEEEeCCCCCCC-CCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~-~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ...|++|+..+.|... +.+..-+-..-.+. +.+.|+++-++++.+..|
T Consensus        75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvp  123 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVP  123 (185)
T ss_dssp             HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSS
T ss_pred             hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEE
Confidence            3478998888755421 11112222344555 578899988888887543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.41  E-value=0.89  Score=40.70  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=24.6

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+|+ |+.....+...++.+++.+|-|.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            457999999985 44333333345788999999883

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.41  E-value=0.9  Score=42.76  Aligned_cols=102  Identities=17%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHHH
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~~  168 (337)
                      ++|.+||+|  ++.++..+++.  ..+|+++|.|++.++.++++....      .+....       .+++. ..|..+-
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA   78 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence            589999998  44556666654  357999999999998877653210      000000       12322 2333222


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +    +.-|+||.-.++..       -...++|+. +.+.++++.+++.+.+
T Consensus        79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS  118 (288)
T PRK09260         79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS  118 (288)
T ss_pred             h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence            3    45799998876431       123467777 6788888888878764

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=91.35  E-value=1.7  Score=40.39  Aligned_cols=122  Identities=17%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeEEEEeC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDVIIGDL  183 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDvIi~D~  183 (337)
                      |..=-|+=.+++.+++.  ..+..++|+-|.-.+..+++|..      +++++++..||.+-+...   ..+==+|++|+
T Consensus        62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP  133 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP  133 (245)
T ss_dssp             --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred             cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence            66777888889888874  57999999999999999888753      579999999999877652   45677999998


Q ss_pred             CCCCCCCCCcCCchHHHHHHHhccccC--CCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeE
Q 019699          184 ADPIEGGPCYKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP  247 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~--p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~  247 (337)
                      +...   +  .=|. ..... +.+.++  +.|+++++-  |  ..+.+..+.+.+.|++. .+.+..
T Consensus       134 pYE~---~--~dy~-~v~~~-l~~a~kR~~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l~  189 (245)
T PF04378_consen  134 PYEQ---K--DDYQ-RVVDA-LAKALKRWPTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVLR  189 (245)
T ss_dssp             ---S---T--THHH-HHHHH-HHHHHHH-TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-EE
T ss_pred             CCCC---c--hHHH-HHHHH-HHHHHHhcCCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeEE
Confidence            6322   1  1111 11111 222232  589999885  2  44666777888888865 454433

; PDB: 2OO3_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.33  E-value=0.26  Score=42.20  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=44.2

Q ss_pred             HHHHHhHHHhcCCCC-CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699           89 HESLVHPALLHHPNP-KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus        89 ~e~l~~~~l~~~~~p-~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      .|.+.|+-.+...++ .+.++||.|+|.+....+++. ....++||++|-.+..+|-+-
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a  115 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHA  115 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHH
Confidence            566666533333444 789999999999999888874 578999999999999988653

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=91.26  E-value=1.6  Score=44.01  Aligned_cols=42  Identities=31%  Similarity=0.443  Sum_probs=29.1

Q ss_pred             eEEEEecchhHHHHHHHh----c---CCCcEEEEEECChHHHHH----HHhhhh
Q 019699          105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLV  147 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~----~---~~~~~v~~VEid~~vi~~----a~~~f~  147 (337)
                      +|.+||+|+. .+..+.+    .   .+..+|+.+|||++-++.    +++++.
T Consensus         2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~   54 (437)
T cd05298           2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK   54 (437)
T ss_pred             eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            7899999996 5544432    2   356799999999975554    555543

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=90.95  E-value=2.7  Score=38.16  Aligned_cols=112  Identities=21%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             HHHHHhHHHhcCCCCCeEEEEecchh----HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           89 HESLVHPALLHHPNPKTIFIMGGGEG----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        89 ~e~l~~~~l~~~~~p~~VLiIG~G~G----~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      .|.+.  +|..--+.+-++++.+++|    +++..++.+....++++|-.|++-...+++.+....   ..+.++++++|
T Consensus        30 aEfIS--AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~  104 (218)
T PF07279_consen   30 AEFIS--ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGE  104 (218)
T ss_pred             HHHHH--HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecC
Confidence            45443  3444456778888865543    345555555567899999999998888888775321   12457999998


Q ss_pred             HH-HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          165 AR-AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       165 ~~-~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .. +.+... ...|.+++|.-.        .-+..++|+. ++  ++|.|.+++
T Consensus       105 ~~e~~~~~~-~~iDF~vVDc~~--------~d~~~~vl~~-~~--~~~~GaVVV  146 (218)
T PF07279_consen  105 APEEVMPGL-KGIDFVVVDCKR--------EDFAARVLRA-AK--LSPRGAVVV  146 (218)
T ss_pred             CHHHHHhhc-cCCCEEEEeCCc--------hhHHHHHHHH-hc--cCCCceEEE
Confidence            54 566554 579999999752        1123466665 33  777775544

The function of this family is unknown.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=90.86  E-value=0.055  Score=48.77  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...|.++|+||+|+|-+...+.-++  ++|.+-|++..|....++.           +.+++-  ..+|++ ++-+||+|
T Consensus       110 ~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli  173 (288)
T KOG3987|consen  110 GQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLI  173 (288)
T ss_pred             CCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehH
Confidence            3467999999999999998887664  6788999999988766542           233332  245553 45679999


Q ss_pred             EE-eCCCCCCCCCCcCCchHHHHHHHhccccCC-CceEEE
Q 019699          180 IG-DLADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT  217 (337)
Q Consensus       180 i~-D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p-~Gvlv~  217 (337)
                      .+ +.-|-.. .|      -..++. +..+|+| +|.+++
T Consensus       174 ~clNlLDRc~-~p------~kLL~D-i~~vl~psngrviv  205 (288)
T KOG3987|consen  174 LCLNLLDRCF-DP------FKLLED-IHLVLAPSNGRVIV  205 (288)
T ss_pred             HHHHHHHhhc-Ch------HHHHHH-HHHHhccCCCcEEE
Confidence            65 2222110 22      134555 6788988 886554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.86  E-value=0.97  Score=43.92  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=24.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ..++||+||+|+ |+.....+...++.+++.||-|.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999984 33333333445788999999985

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.78  E-value=3.8  Score=40.88  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh----------
Q 019699          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (337)
Q Consensus       104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~----------  171 (337)
                      ++|.+||+|--+  ++..++++  .-+|+++|+|++.++..+.-.           ..+...+..+.+++          
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence            589999999443  34445554  368999999999988643311           00111111111110          


Q ss_pred             -cCCceeEEEEeCCCCCCCCCCcCCc-hHHHHHHHhccccCCCceEEEeCC
Q 019699          172 -RKESYDVIIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       172 -~~~~yDvIi~D~~dp~~~~p~~~L~-t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                       ..+.-|+||+..+.|........+. -.+..+. +...|++|-+++..+.
T Consensus        71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST  120 (415)
T ss_pred             cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence             0135799999998663211111222 2334565 6778888777776664

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.75  E-value=5.9  Score=40.36  Aligned_cols=141  Identities=17%  Similarity=0.170  Sum_probs=71.3

Q ss_pred             CeEEEEecchhHHHHH--HHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC-------CCCeEEEEccHHHHHhhcC
Q 019699          104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK  173 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~--ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-------d~rv~v~~~D~~~~l~~~~  173 (337)
                      .+|.+||+|-.+++..  ++++....+|++||+|++.++..++-.. .....++       ..++++ ..|..+-+    
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i----   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV----   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH----
Confidence            3699999997766544  3333224679999999999998765321 1100000       011111 11211111    


Q ss_pred             CceeEEEEeCCCCCCC-C-----CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~-~-----p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      ..-|+||+..+.|... +     .+..-+-.+..+. +.+.|+++-+++..+..|  ....+   .+.+.+.+.-+....
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp--~Gtt~---~~~~~l~~~~~g~~f  150 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP--VKTAE---AIEKILTHNSKGINF  150 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC--CChHH---HHHHHHHhhCCCCCe
Confidence            3478888877655421 1     1111122344455 567888777777776543  22222   333444432222223


Q ss_pred             EEeecccc
Q 019699          248 YSAHIPSF  255 (337)
Q Consensus       248 ~~~~vP~~  255 (337)
                      +.++-|.+
T Consensus       151 ~v~~~PEr  158 (473)
T PLN02353        151 QILSNPEF  158 (473)
T ss_pred             EEEECCCc
Confidence            34556666

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=90.57  E-value=0.34  Score=41.71  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             HHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH
Q 019699           92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL  169 (337)
Q Consensus        92 l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l  169 (337)
                      |.+.|++..-+.++||+||||.=+.  ++.+++.  ..+|++|  +|++.+..++.          +.+++..   +.|-
T Consensus         2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VI--sp~~~~~l~~l----------~~i~~~~---~~~~   64 (157)
T PRK06719          2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVV--SPEICKEMKEL----------PYITWKQ---KTFS   64 (157)
T ss_pred             CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEE--cCccCHHHHhc----------cCcEEEe---cccC
Confidence            4457888778899999999997555  4455553  4688888  45544333321          1333332   2232


Q ss_pred             hhcCCceeEEEEeCCC
Q 019699          170 ESRKESYDVIIGDLAD  185 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~d  185 (337)
                      +..-..+|+|+.-..+
T Consensus        65 ~~dl~~a~lViaaT~d   80 (157)
T PRK06719         65 NDDIKDAHLIYAATNQ   80 (157)
T ss_pred             hhcCCCceEEEECCCC
Confidence            2223668999986544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.57  E-value=2.6  Score=33.45  Aligned_cols=91  Identities=25%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             EEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhc-CCceeEEE
Q 019699          106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDVII  180 (337)
Q Consensus       106 VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~-~~~yDvIi  180 (337)
                      |+++|+|.-+  +++.+.+  ...++++||.|++.++.+++.           .+.++.+|+.+  .+++. -++.|.|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence            5788887432  2333333  235899999999999888763           26788899864  35543 37799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...+..     ..+   ..-.  ..+.+.|...+++..
T Consensus        68 ~~~~~d~-----~n~---~~~~--~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   68 ILTDDDE-----ENL---LIAL--LARELNPDIRIIARV   96 (116)
T ss_dssp             EESSSHH-----HHH---HHHH--HHHHHTTTSEEEEEE
T ss_pred             EccCCHH-----HHH---HHHH--HHHHHCCCCeEEEEE
Confidence            8876422     111   1111  245677888777775

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=90.50  E-value=0.58  Score=40.00  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             HHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699           92 LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus        92 l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      |-++.-....-+.-||++|.|.|-+=-.+....+..+|.+.|-.-   .   .| +  .+.  -|.-.++.||+++-+..
T Consensus        18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l---~---~h-p--~~~--P~~~~~ilGdi~~tl~~   86 (160)
T PF12692_consen   18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRAL---A---CH-P--SST--PPEEDLILGDIRETLPA   86 (160)
T ss_dssp             HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S--G--GG-----GGGEEES-HHHHHHH
T ss_pred             HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeec---c---cC-C--CCC--CchHheeeccHHHHhHH
Confidence            334444444556889999999999988888888889999998621   1   11 1  110  13346899999987765


Q ss_pred             ---cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       172 ---~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                         .+.+--++=.|.-...   +....-+...+.-++..+|++||+++-
T Consensus        87 ~~~~g~~a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   87 LARFGAGAALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             HHHH-S-EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHhcCCceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence               3445556666664321   112222333444446899999999874

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=90.44  E-value=0.67  Score=41.07  Aligned_cols=44  Identities=23%  Similarity=0.199  Sum_probs=35.2

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~  144 (337)
                      ...+..-|||--+|+|+++.++.+.  ..+..++|++++.+++|++
T Consensus       188 ~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  188 STNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             hhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            3466788999999999999998886  4789999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.44  E-value=0.37  Score=46.81  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=61.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHh---hhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~---~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .|+++|++|.|.|+-+.++-.- +...+++++|.+|.+-++.-.   +.....   .+-|..=+..|- .-+. ..+.|+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~dR-l~lp-~ad~yt  187 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTEDR-LSLP-AADLYT  187 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchhc-cCCC-ccceee
Confidence            5899999999999877665553 556789999999986555433   221111   112222222231 1111 236788


Q ss_pred             EEEEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||+-- --|.  +-...++  ...+. +...++|||.+|+-
T Consensus       188 l~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lViv  224 (484)
T COG5459         188 LAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIV  224 (484)
T ss_pred             hhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEE
Confidence            877632 1222  1112232  25566 67889999988764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.14  E-value=1.1  Score=42.10  Aligned_cols=102  Identities=21%  Similarity=0.305  Sum_probs=64.0

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHHH
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE  168 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~~  168 (337)
                      ++|.+||+|  ++.++..++++.  .+|+++|++++.++.+++.....      .+.+..       .++++ ..|. +-
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~   79 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD   79 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence            579999999  667777777652  48999999999987655432110      010100       13432 2332 21


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +    +..|+||.-.+..       .....++|+. +.+.++++.+++.++.+
T Consensus        80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts~  120 (282)
T PRK05808         80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTSS  120 (282)
T ss_pred             h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            2    4579999876532       1123578888 78899999988777643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.84  E-value=1.3  Score=43.19  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=25.8

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+|+ |+.....+...++.+++.||-|.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457999999985 44444444456789999999886

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=89.66  E-value=4  Score=40.96  Aligned_cols=42  Identities=33%  Similarity=0.615  Sum_probs=29.2

Q ss_pred             eEEEEecchhHHHHHHHh----c---CCCcEEEEEECChHHHH----HHHhhhh
Q 019699          105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVE----FCKSYLV  147 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~----~---~~~~~v~~VEid~~vi~----~a~~~f~  147 (337)
                      +|.+||+|+. .+..+.+    .   .+..+|..+|||++-++    +|++.+.
T Consensus         2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~   54 (425)
T cd05197           2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVE   54 (425)
T ss_pred             EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            7899999996 5544432    2   35689999999996554    4555544

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=89.58  E-value=1.1  Score=42.54  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=43.5

Q ss_pred             EEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE----EEccHHHH--Hhhc--CC
Q 019699          106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAE--LESR--KE  174 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v----~~~D~~~~--l~~~--~~  174 (337)
                      ||+-|+ +|+++.++.++   ....++.++|.|+.-+-..++.+...   +.++++++    +.+|.++.  +...  ..
T Consensus         1 VLVTGa-~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~   76 (293)
T PF02719_consen    1 VLVTGA-GGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY   76 (293)
T ss_dssp             EEEETT-TSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred             CEEEcc-ccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence            566665 57777776654   34478999999998877766665321   12456654    58888754  3332  24


Q ss_pred             ceeEEEEeCC
Q 019699          175 SYDVIIGDLA  184 (337)
Q Consensus       175 ~yDvIi~D~~  184 (337)
                      +.|+||.-+.
T Consensus        77 ~pdiVfHaAA   86 (293)
T PF02719_consen   77 KPDIVFHAAA   86 (293)
T ss_dssp             T-SEEEE---
T ss_pred             CCCEEEEChh
Confidence            8999999886

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02494 adenosylhomocysteinase

Probab=89.55  E-value=7.9  Score=39.36  Aligned_cols=118  Identities=8%  Similarity=0.036  Sum_probs=62.4

Q ss_pred             CCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..++|+++|.|.=+.. ...++..+ .+|+++|+|+.-...+... .          +.+.  +..+.+    +..|+|+
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVVI  314 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIFV  314 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEEE
Confidence            4789999999964432 22333344 5899999999654344332 0          1111  222333    3479998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH-HHHhhhcCceeEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKYVVPYSA  250 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~-~~l~~vF~~v~~~~~  250 (337)
                      ....      - .++...+.     -+.|+++|+++ |.+.++.-.+...+.+.- -.-+.+.|++..|..
T Consensus       315 ~tTG------t-~~vI~~e~-----L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~  372 (477)
T PLN02494        315 TTTG------N-KDIIMVDH-----MRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVF  372 (477)
T ss_pred             ECCC------C-ccchHHHH-----HhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEEc
Confidence            6321      1 23433333     34688888876 665432122333332220 112356688777754

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=89.47  E-value=0.4  Score=41.81  Aligned_cols=110  Identities=20%  Similarity=0.296  Sum_probs=65.1

Q ss_pred             EEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhh--hccCCCCCCCeEEEEc-cHHHHHhh---cCCceeEE
Q 019699          107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLV--VNKEAFSDPRLELVIN-DARAELES---RKESYDVI  179 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~--~~~~~~~d~rv~v~~~-D~~~~l~~---~~~~yDvI  179 (337)
                      |.||=|+-+.+..++++.+ ..+|++--.|.+ -++.++|-.  .+-..+....++++.+ ||.+.-+.   ..++||.|
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI   79 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI   79 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence            6799999999999998755 556665555554 333333321  1111234455655543 54332221   24789999


Q ss_pred             EEeCCCCCCC---CCC----cCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEG---GPC----YKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~---~p~----~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |-+-|.....   +..    ..-.-..||+. ++++|+++|.+.+-
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVT  124 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVT  124 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            9998853200   000    01122679999 89999999966554

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.25  E-value=1.8  Score=40.94  Aligned_cols=86  Identities=20%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..++||++|+| -|.++..+++..+...|.+++.+++-++.|+++...      ++.         +   .....+|+||
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i------~~~---------~---~~~~g~Dvvi  205 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL------DPE---------K---DPRRDYRAIY  205 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc------Chh---------h---ccCCCCCEEE
Confidence            45789999865 455566777777766788889988877776653111      110         0   0134689887


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       |...    ++       ..++. +-+.|+++|.+++-
T Consensus       206 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~  230 (308)
T TIGR01202       206 -DASG----DP-------SLIDT-LVRRLAKGGEIVLA  230 (308)
T ss_pred             -ECCC----CH-------HHHHH-HHHhhhcCcEEEEE
Confidence             5431    11       22344 45789999998854

>PRK07340 ornithine cyclodeaminase; Validated

Probab=88.96  E-value=15  Score=34.92  Aligned_cols=113  Identities=13%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC
Q 019699           59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID  135 (337)
Q Consensus        59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid  135 (337)
                      .+.+++... |+. .++||...+.-+..-.  -.++ .-++..++.+++++||+|.=+-  +..+....+..+|.+.+.+
T Consensus        84 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaA~--sala-~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~  159 (304)
T PRK07340         84 EVVVADAAT-GERLFLLDGPTVTGRRTAAV--SLLA-ARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT  159 (304)
T ss_pred             EEEEEECCC-CcEEEEEcChhHHHHHHHHH--HHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            566666655 543 4678877665443211  1111 1223446789999999975432  3333333566899999999


Q ss_pred             hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      ++-.+...+.+...       .+.+...|..+-+    ...|+|++-.+.+
T Consensus       160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~aDiVitaT~s~  199 (304)
T PRK07340        160 AASAAAFCAHARAL-------GPTAEPLDGEAIP----EAVDLVVTATTSR  199 (304)
T ss_pred             HHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcCCEEEEccCCC
Confidence            87665544443311       1233345655555    4699999887643

>cd08293 PTGR2 Prostaglandin reductase

Probab=88.81  E-value=3.2  Score=39.41  Aligned_cols=95  Identities=22%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             CeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699          104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi  180 (337)
                      .+||+.|+  |-|..+..++++.+..+|.++.-+++-.+.+++.++..      .-+.....|..+.+++ ..+.+|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence            79999985  56677778888776447999998888777777644321      1111111233444433 235699988


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       |...    ++       . ++. +.+.|+++|.++.-
T Consensus       230 -d~~g----~~-------~-~~~-~~~~l~~~G~iv~~  253 (345)
T cd08293         230 -DNVG----GE-------I-SDT-VISQMNENSHIILC  253 (345)
T ss_pred             -ECCC----cH-------H-HHH-HHHHhccCCEEEEE
Confidence             5431    11       1 233 45789999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=88.77  E-value=1.3  Score=44.06  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~  173 (337)
                      ..+.-|.++-+|.|-++.-+++.  .++|++-|++|++++..+.+.+.+.  .+..+++++..||..|+++..
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~~Flr~e~  316 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAKDFLRQEP  316 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccc--cchhheeeecccHHHHhhcCC
Confidence            45667888999999988888775  3899999999999999999988764  233459999999999997443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=88.54  E-value=2.7  Score=40.36  Aligned_cols=94  Identities=19%  Similarity=0.311  Sum_probs=54.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEEC---ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEi---d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+||++|+|. |.++..+++..+. +|++++.   +++-.+.++++-... -...+       .|..+ .+ ....+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~-------~~~~~-~~-~~~~~d  240 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSK-------TPVAE-VK-LVGEFD  240 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc-------cchhh-hh-hcCCCC
Confidence            568999998764 4456667777654 7998886   677788887642111 00001       11111 11 235699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||--...     +       ..+.. ..+.|+++|.+++-.
T Consensus       241 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATGV-----P-------PLAFE-ALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcCC-----H-------HHHHH-HHHHccCCcEEEEEe
Confidence            88744321     1       23344 457899999887643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=88.52  E-value=2.2  Score=38.56  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid  135 (337)
                      ...+|++||+|+ |+.....+...++.+++.+|-|
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            457899999884 4443333444578899999999

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.43  E-value=4.4  Score=37.61  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      +..+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ ++      .+..+.+.+  ....+|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i-~~------~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LA-EP------EVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ec-Cc------hhhHHHHHHHhCCCCCCE
Confidence            467999998753 334556667666666999999999888888752110  01 11      111122222  1346998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      || |...    .+       .-++. +.+.|+++|.++.-.
T Consensus       191 vi-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       191 AL-EFSG----AT-------AAVRA-CLESLDVGGTAVLAG  218 (280)
T ss_pred             EE-ECCC----Ch-------HHHHH-HHHHhcCCCEEEEec
Confidence            87 4331    11       22333 457899999988654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.36  E-value=3  Score=40.22  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-Ccee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~yD  177 (337)
                      ....+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++ +.      +.-+.....|..+.+.+. . ..+|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d  247 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD  247 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence            4568999998653 33456667766656799999999999988764 21      111111123444444432 2 4589


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+ |...    ++       +.++. +.+.|+++|.+++-.
T Consensus       248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG  276 (358)
T ss_pred             EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence            887 5431    11       22333 456799999987643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=88.30  E-value=1.8  Score=37.81  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=22.9

Q ss_pred             eEEEEecch-hHH-HHHHHhcCCCcEEEEEECCh
Q 019699          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       105 ~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~  136 (337)
                      +||+||+|+ |+. +..+++ .+..+++.+|-|.
T Consensus         1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence            589999984 443 444444 5788999999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.29  E-value=3.1  Score=37.94  Aligned_cols=71  Identities=32%  Similarity=0.430  Sum_probs=49.8

Q ss_pred             CeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhcC-CceeE
Q 019699          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRK-ESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~~-~~yDv  178 (337)
                      ++++++|+|.  +.+++.|.+.  ...|+.+|.|++.++....         +..-.+++++|+.  +.|++.+ ..+|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA---------DELDTHVVIGDATDEDVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh---------hhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence            4789999994  4456666654  3579999999988776322         0124677888885  4566653 78999


Q ss_pred             EEEeCCC
Q 019699          179 IIGDLAD  185 (337)
Q Consensus       179 Ii~D~~d  185 (337)
                      ++....+
T Consensus        70 vva~t~~   76 (225)
T COG0569          70 VVAATGN   76 (225)
T ss_pred             EEEeeCC
Confidence            9998764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.14  E-value=3.1  Score=40.14  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=64.8

Q ss_pred             CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-----cCCC----CCCCeEEEEccHHHHHhh
Q 019699          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES  171 (337)
Q Consensus       103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~----~d~rv~v~~~D~~~~l~~  171 (337)
                      .++|.+||+|  +.+++..++.+  ..+|++.|.+++..+.+++.+...     ...+    ...|+++. .|..+-+  
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--   81 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--   81 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence            4789999999  55666666664  478999999999887766543210     0000    01244433 2322222  


Q ss_pred             cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                        ..-|+|+-..++..       -..++.|+. +.+.++|+-++..|+.
T Consensus        82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS  120 (321)
T PRK07066         82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS  120 (321)
T ss_pred             --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence              45789998765321       124577888 7888999888887764

>PRK11524 putative methyltransferase; Provisional

Probab=88.10  E-value=1.4  Score=41.53  Aligned_cols=56  Identities=14%  Similarity=0.013  Sum_probs=44.4

Q ss_pred             HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699           90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus        90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      +++-.+-.+...+..-|||--+|+|+++..+.+.  ..+..++|||++.+++|++.+.
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence            3343333334466788999999999999988876  4789999999999999999864

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=88.07  E-value=4.1  Score=35.75  Aligned_cols=100  Identities=18%  Similarity=0.282  Sum_probs=58.9

Q ss_pred             eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCC-------CCCeEEEEccHHHHH
Q 019699          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL  169 (337)
Q Consensus       105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------d~rv~v~~~D~~~~l  169 (337)
                      +|.+||+|.=+  ++..++.+  ..+|+++|.|++.++.+++++...      .+.+.       -.++++ ..|    +
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~d----l   73 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTD----L   73 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESS----G
T ss_pred             CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccC----H
Confidence            58899998533  44444444  479999999999999888875421      11111       123442 223    2


Q ss_pred             hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .... ..|+||=..+...       =..+++|+. +.+.+.|+-+|+.|+.
T Consensus        74 ~~~~-~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   74 EEAV-DADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS  115 (180)
T ss_dssp             GGGC-TESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred             HHHh-hhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence            2222 6888886654321       124689998 8999999999999974

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=88.00  E-value=1.5  Score=43.97  Aligned_cols=75  Identities=23%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             eEEEEecchhHHH-HH---HHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCcee
Q 019699          105 TIFIMGGGEGSTA-RE---ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD  177 (337)
Q Consensus       105 ~VLiIG~G~G~~~-~~---ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yD  177 (337)
                      +|.+||+|+-+.+ ..   ++..  ....+|..+|+|++.++...+......... ....++. ..|..+-++    .-|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal~----~AD   76 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREALD----GAD   76 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhc----CCC
Confidence            6899999994443 22   3311  234589999999988777655432111001 1223443 556444443    468


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +||.-..
T Consensus        77 ~Vi~ai~   83 (423)
T cd05297          77 FVINTIQ   83 (423)
T ss_pred             EEEEeeE
Confidence            8888775

linked to 3D####ucture

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=87.79  E-value=8.8  Score=36.83  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEecch-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~-G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+++|.+||+|. |......+...+. .++..+|++++..+.-..-+.... .+. .++++..+|-.+ +    +.-|
T Consensus         3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~----~~ad   75 (315)
T PRK00066          3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C----KDAD   75 (315)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h----CCCC
Confidence            35678999999986 5555444443333 479999998876543333222111 122 346666555332 2    4589


Q ss_pred             EEEEeCCCCC
Q 019699          178 VIIGDLADPI  187 (337)
Q Consensus       178 vIi~D~~dp~  187 (337)
                      +||+-+-.|.
T Consensus        76 ivIitag~~~   85 (315)
T PRK00066         76 LVVITAGAPQ   85 (315)
T ss_pred             EEEEecCCCC
Confidence            9999876554

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=87.63  E-value=18  Score=31.42  Aligned_cols=109  Identities=16%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      -..++|.+||.|. |......++-++ .+|.+++..+.-...+...           .+  ...+..+.++    +.|+|
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv   95 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV   95 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence            3578999999974 333333444454 6999999999866622221           11  2234455554    48999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      ++-.+...  . -.++++.++|+.     +++|.+ ++|.+-.. .-+.   ..+++.|++
T Consensus        96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga~-lvN~aRG~-~vde---~aL~~aL~~  143 (178)
T PF02826_consen   96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGAV-LVNVARGE-LVDE---DALLDALES  143 (178)
T ss_dssp             EE-SSSST--T-TTTSBSHHHHHT-----STTTEE-EEESSSGG-GB-H---HHHHHHHHT
T ss_pred             hhhhcccc--c-cceeeeeeeeec-----cccceE-EEeccchh-hhhh---hHHHHHHhh
Confidence            99987321  1 247888888774     565555 55864221 1222   345566665

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.37  E-value=3.5  Score=39.95  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++ ...      .-+.....|..+.+.+ ..+.+|+
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~  262 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDY  262 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCE
Confidence            3457999998653 34456667766655799999999999998774 211      0011111233333433 2336998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      || |...    .+       +.++. +-+.|+++|.++.-.
T Consensus       263 vi-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G  290 (371)
T cd08281         263 AF-EMAG----SV-------PALET-AYEITRRGGTTVTAG  290 (371)
T ss_pred             EE-ECCC----Ch-------HHHHH-HHHHHhcCCEEEEEc
Confidence            88 4431    11       22333 456899999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.30  E-value=6.2  Score=35.40  Aligned_cols=98  Identities=21%  Similarity=0.326  Sum_probs=59.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-hhcCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-~~~~~~yDv  178 (337)
                      .+..+||+.|+|+ |..+..+++..+ .+|++++.+++-.+.+++.....  .+     .....+...-+ ....+.+|+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~--~~-----~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADH--VI-----DYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCce--ec-----cCCcCCHHHHHHHhcCCCCCE
Confidence            5678999999986 656666777654 78999999998888776542110  01     11111121111 123467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+.....+            ...+. +.+.|+++|.++...
T Consensus       205 vi~~~~~~------------~~~~~-~~~~l~~~G~~v~~~  232 (271)
T cd05188         205 VIDAVGGP------------ETLAQ-ALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEECCCCH------------HHHHH-HHHhcccCCEEEEEc
Confidence            98543210            23344 467889999988654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=87.13  E-value=3.1  Score=40.43  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=24.5

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+|+ |+.....+...++.+++.||-|.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            457899999985 33333333345788999999983

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.06  E-value=2.8  Score=39.40  Aligned_cols=103  Identities=20%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             CCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHH
Q 019699          103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARA  167 (337)
Q Consensus       103 p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~  167 (337)
                      -++|.+||+|.=  .++..+++.  ..+|+++|.+++.++.+.+.+...      .+.+..       .++++. .|. +
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~   79 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E   79 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence            368999999943  455555554  358999999999888765432210      111110       233332 332 2


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      -+    ...|+||.-.++..       -....+|+. +...++++.+++.++.+
T Consensus        80 ~~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~  121 (292)
T PRK07530         80 DL----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS  121 (292)
T ss_pred             Hh----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence            22    35799998876421       123467777 78889999888767643

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=86.94  E-value=2  Score=38.95  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             HHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh
Q 019699           95 PALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (337)
Q Consensus        95 ~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~  170 (337)
                      +|++..-+.++||++|||+-+.-+  .+++.  .++|++|=.+  +++-.+..+           .++.++. +  .|-.
T Consensus         4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~--ga~v~Vvs~~~~~el~~~~~~-----------~~i~~~~-~--~~~~   67 (210)
T COG1648           4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKA--GADVTVVSPEFEPELKALIEE-----------GKIKWIE-R--EFDA   67 (210)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhc--CCEEEEEcCCccHHHHHHHHh-----------cCcchhh-c--ccCh
Confidence            466666678899999999888753  34443  4666665333  333332222           2233332 1  2222


Q ss_pred             hcCCceeEEEEeCCCC
Q 019699          171 SRKESYDVIIGDLADP  186 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp  186 (337)
                      ..-..+++||....|+
T Consensus        68 ~~~~~~~lviaAt~d~   83 (210)
T COG1648          68 EDLDDAFLVIAATDDE   83 (210)
T ss_pred             hhhcCceEEEEeCCCH
Confidence            2223389999887654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.83  E-value=2  Score=42.16  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=25.4

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid  135 (337)
                      ..++||++|+|+ |......+...++.+++.||-|
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            567999999984 4444444445678999999998

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=86.73  E-value=3.7  Score=36.65  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ..+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            47899999985 33333333346889999999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=86.69  E-value=1.8  Score=37.68  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE-EEEccHHHHHhhcCCceeEEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~-v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .++++++|..-=-+-..+++| +..+|..||-++--++  .+        +. .|+. +...|..+-.++..++||.+.+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~--------~~-dr~ssi~p~df~~~~~~y~~~fD~~as   69 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE--------FR-DRLSSILPVDFAKNWQKYAGSFDFAAS   69 (177)
T ss_pred             CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc--------cc-cccccccHHHHHHHHHHhhccchhhhe
Confidence            578999999865555555665 5788999998762211  11        11 2332 2223333333445678998876


Q ss_pred             eCC-CCCC----CCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~-dp~~----~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      -.. ++..    ..|....-...-+.. +++.||+||.+.+-.
T Consensus        70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV  111 (177)
T ss_pred             echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence            554 2210    122222223344555 689999999887653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=86.68  E-value=14  Score=29.22  Aligned_cols=109  Identities=20%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             eEEEEecchhHHH--HHHHhcCCCcEEE-EEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGEGSTA--REILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~G~~~--~~ll~~~~~~~v~-~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ||.+||+|..+..  ..+.+..+..+++ ++|.+++-.+.+.+.+.          +. ...|..+.+...  ..|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~~--~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLADE--DVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHHT--TESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHhh--cCCEEEE
Confidence            7899999876443  3444443445655 88999987776655432          22 667777777653  6999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      -.+...      +      ++. +...|+-|--+++.-  | ...+.+..+++.+..++.-
T Consensus        69 ~tp~~~------h------~~~-~~~~l~~g~~v~~EK--P-~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   69 ATPPSS------H------AEI-AKKALEAGKHVLVEK--P-LALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             ESSGGG------H------HHH-HHHHHHTTSEEEEES--S-SSSSHHHHHHHHHHHHHHT
T ss_pred             ecCCcc------h------HHH-HHHHHHcCCEEEEEc--C-CcCCHHHHHHHHHHHHHhC
Confidence            876321      1      222 455666666555554  2 1346677777777776543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.62  E-value=2.6  Score=39.83  Aligned_cols=101  Identities=12%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC-------CCeEEEEccHHHH
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD-------PRLELVINDARAE  168 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d-------~rv~v~~~D~~~~  168 (337)
                      ++|-+||+|  +++++..+++.  ..+|+++|.+++.++.+++....      ..+.+.+       .|+++ ..|. +-
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence            589999999  66677777765  46899999999999887665321      1111111       12322 2332 22


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc-CCCceEEEeCC
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG  220 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L-~p~Gvlv~~~~  220 (337)
                      +    ..-|+||--.++..       -..++.|.. +.+.+ +|+-+++.|+.
T Consensus        82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS  122 (286)
T PRK07819         82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS  122 (286)
T ss_pred             h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence            2    45799998776422       124567787 77778 78888888864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.62  E-value=4.2  Score=38.28  Aligned_cols=100  Identities=19%  Similarity=0.336  Sum_probs=60.1

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh---------ccCCCCC-------CCeEEEEccH
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---------NKEAFSD-------PRLELVINDA  165 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~---------~~~~~~d-------~rv~v~~~D~  165 (337)
                      ++|.+||+|  +++++..++++  ..+|+++|.+++.++.+++....         ..+....       .+++.. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            689999999  44556666654  35899999999999876553211         0000000       122221 222


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       +-+    ...|+||.-.+...       -...++|+. +.+.++++.+++.++
T Consensus        81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t  121 (291)
T PRK06035         81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT  121 (291)
T ss_pred             -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence             212    34799998775321       123577887 788888888887664

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=86.60  E-value=3.5  Score=36.79  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            347899999875 33233333346789999999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=86.56  E-value=4.4  Score=40.52  Aligned_cols=43  Identities=16%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~  145 (337)
                      ..++|+++|+|.=+. ...+++..+ .+|+++|+|+.-.+.|++.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~  244 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME  244 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc
Confidence            578999999997544 333445454 4899999999888887763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=86.53  E-value=4.8  Score=38.46  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD  177 (337)
                      ...++||+.|+| .|..+..++++.+...+++++.+++-.+.++++ +..      .-+.....|..+.+.+  ..+.+|
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d  237 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD  237 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence            456899999765 344456677777766799999999888888874 211      1111111232232322  234699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|+--..     ++       ..+.. +.++|+++|.++.-
T Consensus       238 ~vld~~g-----~~-------~~~~~-~~~~l~~~G~~v~~  265 (351)
T cd08285         238 AVIIAGG-----GQ-------DTFEQ-ALKVLKPGGTISNV  265 (351)
T ss_pred             EEEECCC-----CH-------HHHHH-HHHHhhcCCEEEEe
Confidence            8874322     11       23444 56789999988753

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=86.40  E-value=4.9  Score=33.38  Aligned_cols=84  Identities=14%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             CCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHH-HHHhhhhhccCCCCCCCeEEEEc-cHHHHHhhcCCce
Q 019699          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~d~rv~v~~~-D~~~~l~~~~~~y  176 (337)
                      -+.++||+||+|+-+  ++..++++ +..+|+++--+.+=.+ +++++ +       ...++++.- |..+.+    ..+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~-~-------~~~~~~~~~~~~~~~~----~~~   76 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEF-G-------GVNIEAIPLEDLEEAL----QEA   76 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHH-T-------GCSEEEEEGGGHCHHH----HTE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHc-C-------ccccceeeHHHHHHHH----hhC
Confidence            467899999997532  23444444 6788999999976444 44443 1       234555433 322233    469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      |+||.-.+.+.      ...+.+.+..
T Consensus        77 DivI~aT~~~~------~~i~~~~~~~   97 (135)
T PF01488_consen   77 DIVINATPSGM------PIITEEMLKK   97 (135)
T ss_dssp             SEEEE-SSTTS------TSSTHHHHTT
T ss_pred             CeEEEecCCCC------cccCHHHHHH
Confidence            99998876432      2455555443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=86.36  E-value=6.1  Score=37.19  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=27.7

Q ss_pred             CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+| -|+...+.+...++.+++.||-|.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            56799999998 466666666667789999999884

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=86.10  E-value=3.1  Score=33.52  Aligned_cols=87  Identities=21%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-CceeEEEEeCCCCCCC
Q 019699          112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVIIGDLADPIEG  189 (337)
Q Consensus       112 G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~yDvIi~D~~dp~~~  189 (337)
                      |-|..+..++++.+ .+|++++.++.-.+.++++-...-       +.....|..+.+++. + +.+|+||--...    
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~-------~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV-------IDYSDDDFVEQIRELTGGRGVDVVIDCVGS----   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE-------EETTTSSHHHHHHHHTTTSSEEEEEESSSS----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc-------ccccccccccccccccccccceEEEEecCc----
Confidence            45788888899887 899999999999999998642110       011112245555553 2 479999855421    


Q ss_pred             CCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                              .+-++. +-++|+++|.+++-.
T Consensus        69 --------~~~~~~-~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   69 --------GDTLQE-AIKLLRPGGRIVVVG   89 (130)
T ss_dssp             --------HHHHHH-HHHHEEEEEEEEEES
T ss_pred             --------HHHHHH-HHHHhccCCEEEEEE
Confidence                    134455 567899999988765

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=86.07  E-value=0.62  Score=43.10  Aligned_cols=45  Identities=31%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcC--------CCcEEEEEECChHHHHHHHhhhh
Q 019699          103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~--------~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      +-+|+++|+|.|.+++-++++.        ...+++.||++|...+.-++.+.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            5799999999999998888742        23589999999999998888764

; PDB: 4F3N_A 1ZKD_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=86.06  E-value=3.5  Score=41.95  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...-++|+++.+|.|+++.++.+.+    |.+.-.-|.   .....++.-   + |-.+-=+.-|--+-+...+++||+|
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---y-dRGLIG~yhDWCE~fsTYPRTYDLl  431 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---Y-DRGLIGVYHDWCEAFSTYPRTYDLL  431 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---h-hcccchhccchhhccCCCCcchhhe
Confidence            4567899999999999999998753    322222111   111111110   0 1111111223334444567999999


Q ss_pred             EEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      =.+.- +... ..+  . -...+-+ +.|+|+|+|.+++.-
T Consensus       432 HA~~lfs~~~-~rC--~-~~~illE-mDRILRP~G~~iiRD  467 (506)
T PF03141_consen  432 HADGLFSLYK-DRC--E-MEDILLE-MDRILRPGGWVIIRD  467 (506)
T ss_pred             ehhhhhhhhc-ccc--c-HHHHHHH-hHhhcCCCceEEEec
Confidence            87753 2221 111  1 1334444 689999999999863

; GO: 0008168 methyltransferase activity

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.98  E-value=3.4  Score=43.49  Aligned_cols=71  Identities=27%  Similarity=0.422  Sum_probs=50.4

Q ss_pred             CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC-Ccee
Q 019699          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~-~~yD  177 (337)
                      ..+|+++|+|. |.. ++.+.+.  ..+++++|.|++-++.++++           ..+++.+|+.+  .+++.+ ++.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence            36899999984 333 3344432  35799999999999988763           35789999864  455433 6899


Q ss_pred             EEEEeCCCC
Q 019699          178 VIIGDLADP  186 (337)
Q Consensus       178 vIi~D~~dp  186 (337)
                      ++++-..|+
T Consensus       467 ~vvv~~~d~  475 (621)
T PRK03562        467 VLINAIDDP  475 (621)
T ss_pred             EEEEEeCCH
Confidence            999887654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=85.93  E-value=5.4  Score=38.07  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      ...++||+.|+|. |..+..+++..+...|.+++.+++-.+.++++ +.. ..+     .....+..+..+.. ...+|.
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~-~~i-----~~~~~~~~~~~~~~~~~~~d~  231 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM-QTF-----NSREMSAPQIQSVLRELRFDQ  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc-eEe-----cCcccCHHHHHHHhcCCCCCe
Confidence            4568999998653 23345566666655688999999988888764 211 001     11111212222222 246886


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++|...    ++       ..+.. .-+.|+++|.+++-.
T Consensus       232 ~v~d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G  260 (347)
T PRK10309        232 LILETAG----VP-------QTVEL-AIEIAGPRAQLALVG  260 (347)
T ss_pred             EEEECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence            7778652    11       23344 457899999987653

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=85.87  E-value=4.6  Score=41.47  Aligned_cols=105  Identities=15%  Similarity=0.317  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC-------CCeEEEEccH
Q 019699          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD-------PRLELVINDA  165 (337)
Q Consensus       101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d-------~rv~v~~~D~  165 (337)
                      .+.++|-+||+|  +++++..+++.  .-.|++.|.+++.++.++++...      ..+.+..       .|++.. .|.
T Consensus         5 ~~i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   81 (507)
T PRK08268          5 PSIATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL   81 (507)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence            355789999999  55677777765  36899999999999887655431      1111100       134433 232


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      .. +    ..-|+||--.++..       -....+|+. +.+.++++.+++.|+++
T Consensus        82 ~~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt  124 (507)
T PRK08268         82 AD-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS  124 (507)
T ss_pred             HH-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence            22 2    35799998877532       123466777 67778888888878653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.85  E-value=4.8  Score=37.89  Aligned_cols=103  Identities=18%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-----c-cCCCCC-------CCeEEEEccHHH
Q 019699          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD-------PRLELVINDARA  167 (337)
Q Consensus       103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-----~-~~~~~d-------~rv~v~~~D~~~  167 (337)
                      -++|.+||+|  +..++..++++  ..+|+++|.+++.++.+++.+..     . .+.+..       .+++ ...|. +
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~   79 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E   79 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence            4689999999  55666777665  36899999999988766554321     0 000100       1122 22332 2


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      -+    +.-|+||.-.++..      .+ ...+|+. +.+.++++.+++.++.+
T Consensus        80 ~~----~~aD~Vieav~e~~------~~-k~~v~~~-l~~~~~~~~il~s~tS~  121 (295)
T PLN02545         80 EL----RDADFIIEAIVESE------DL-KKKLFSE-LDRICKPSAILASNTSS  121 (295)
T ss_pred             Hh----CCCCEEEEcCccCH------HH-HHHHHHH-HHhhCCCCcEEEECCCC
Confidence            22    34699998876421      11 3467777 67788888888777643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=85.70  E-value=3.4  Score=32.67  Aligned_cols=91  Identities=19%  Similarity=0.341  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .-+.++||+||+|.-+..+.-.-.....+|+++.-+.   +.++            .+++++..+..    ..-..+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~----~~l~~~~lV   64 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFE----EDLDGADLV   64 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-G----GGCTTESEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHH----HHHhhheEE
Confidence            3567899999999877754433333458999988776   2222            24455444322    223569999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +....++.        .....++     ..+.-|+++-....|
T Consensus        65 ~~at~d~~--------~n~~i~~-----~a~~~~i~vn~~D~p   94 (103)
T PF13241_consen   65 FAATDDPE--------LNEAIYA-----DARARGILVNVVDDP   94 (103)
T ss_dssp             EE-SS-HH--------HHHHHHH-----HHHHTTSEEEETT-C
T ss_pred             EecCCCHH--------HHHHHHH-----HHhhCCEEEEECCCc
Confidence            97765431        1233444     344578887555444

>PTZ00117 malate dehydrogenase; Provisional

Probab=85.55  E-value=10  Score=36.49  Aligned_cols=107  Identities=21%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv  178 (337)
                      +..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|-. -+    ..-|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence            346899999998 776666665545467999999987654 2221 1111 111223345554 5532 33    34699


Q ss_pred             EEEeCCCCCCCCCC-cC------CchHHHHHHHhccccCCCceEEE
Q 019699          179 IIGDLADPIEGGPC-YK------LYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~------L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      |++-.-.+...+.. ..      -.-+++.+. +.+ ..|++++++
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~viv  120 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVIC  120 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEE
Confidence            99877433311110 00      111345555 443 478996654

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=85.54  E-value=29  Score=34.15  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..|.|++.|-|..+=+.......-..+|.+.|+||-- ++++-            +.+++...+      +....-|++|
T Consensus       208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M------------dGf~V~~m~------~Aa~~gDifi  269 (420)
T COG0499         208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM------------DGFRVMTME------EAAKTGDIFV  269 (420)
T ss_pred             cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh------------cCcEEEEhH------HhhhcCCEEE
Confidence            5789999999987655554444446899999999953 23322            223443322      2223357777


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA  250 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~  250 (337)
                      .-.-.       ....+.|-+..     ++ +|.++.|.|+-+.--+...+++.....+++-|.|.-|..
T Consensus       270 T~TGn-------kdVi~~eh~~~-----Mk-DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l  326 (420)
T COG0499         270 TATGN-------KDVIRKEHFEK-----MK-DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYEL  326 (420)
T ss_pred             EccCC-------cCccCHHHHHh-----cc-CCeEEecccccceeccHHHHHHhhhhHhccccCceEEEc
Confidence            65422       24445555554     33 677778988643333455566666677888888887753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=85.29  E-value=3.2  Score=37.75  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=24.0

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+|+++|+|+ |+.....+...++.+++.||-|.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            357999999984 33333334445789999997664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=85.17  E-value=11  Score=35.96  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv  178 (337)
                      ..++|++||+|.=+ .....++..+..+|++++.+++- .++++++ +.          .++. .|..+.+    ..+|+
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~~~~~l----~~aDv  241 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG----------NAVPLDELLELL----NEADV  241 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC----------eEEeHHHHHHHH----hcCCE
Confidence            57899999986422 22222333456789999999864 4666654 11          1221 2333333    35899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ||.-.+.+.   |      .+.+.. +.+....+|.+++....|
T Consensus       242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP  275 (311)
T cd05213         242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence            998876432   1      233333 222222367888887544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=85.13  E-value=5  Score=36.83  Aligned_cols=35  Identities=31%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+| .|+...+.+.+.++.+++.||-|.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            34689999997 455555556667899999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.04  E-value=6.7  Score=37.14  Aligned_cols=103  Identities=17%  Similarity=0.305  Sum_probs=59.1

Q ss_pred             CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCC--------CCeEEEEccHHHHHhhc
Q 019699          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESR  172 (337)
Q Consensus       103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d--------~rv~v~~~D~~~~l~~~  172 (337)
                      -++|.+||+|  ++.++..+++.  ..+|+++|.+++.++.+++......+....        .++++ ..|..+.+   
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---   77 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---   77 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh---
Confidence            3689999999  44556666553  357999999999988877642210000000        11222 23333333   


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                       +..|+||.-.+...       -...+++.. +...++++-+++.++.
T Consensus        78 -~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~ts  116 (311)
T PRK06130         78 -SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNTS  116 (311)
T ss_pred             -ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECCC
Confidence             35799998875321       113456666 5666666666655543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.97  E-value=1.4  Score=41.38  Aligned_cols=102  Identities=22%  Similarity=0.278  Sum_probs=61.5

Q ss_pred             CeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC--------CCeEEEEccHHH
Q 019699          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD--------PRLELVINDARA  167 (337)
Q Consensus       104 ~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d--------~rv~v~~~D~~~  167 (337)
                      ++|.+||+|.-  +++..+++.  ..+|+++|.+++.++.+++....      ....+..        .++++ ..|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence            68999999843  344444443  35899999999988877654311      0001110        23432 344333


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .+    +.-|+||.-.+...       -...++|+. +...++++-+++.|.+
T Consensus        81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS  121 (287)
T PRK08293         81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS  121 (287)
T ss_pred             Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence            33    34699998876321       123567777 6778888888777754

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=84.92  E-value=1.8  Score=41.18  Aligned_cols=76  Identities=14%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~~  175 (337)
                      ....+|..||.|+..++..+.+.|  .+|++|||++.-+.+-+-.+..... +  |+    ++|...|+...     ..-
T Consensus        62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R~-L--p~----h~dl~r~~a~a~t~~n~~~  132 (414)
T COG5379          62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFRH-L--PS----HEDLVRFFALAGTRRNSQA  132 (414)
T ss_pred             CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHhh-c--cc----chhhHHHhhhhcccccchh
Confidence            566789999999887888877754  6899999999998887665432210 0  11    23667776432     345


Q ss_pred             eeEEEEeCCC
Q 019699          176 YDVIIGDLAD  185 (337)
Q Consensus       176 yDvIi~D~~d  185 (337)
                      ||+-+..--+
T Consensus       133 yD~flae~ld  142 (414)
T COG5379         133 YDRFLAEHLD  142 (414)
T ss_pred             hhcccccccc
Confidence            8887765443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.85  E-value=5.5  Score=39.65  Aligned_cols=73  Identities=25%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             CCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCce
Q 019699          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~y  176 (337)
                      ..++++++|+|.=+  +++.+.++  ...++++|.|++.++..++.+         +.+.++.+|+.  +.|++. -+++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence            46899999997433  23333332  357999999999888766532         24678888884  344433 3679


Q ss_pred             eEEEEeCCC
Q 019699          177 DVIIGDLAD  185 (337)
Q Consensus       177 DvIi~D~~d  185 (337)
                      |.|++-..+
T Consensus       299 ~~vi~~~~~  307 (453)
T PRK09496        299 DAFIALTND  307 (453)
T ss_pred             CEEEECCCC
Confidence            999876653

>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species

Probab=84.66  E-value=2.5  Score=38.92  Aligned_cols=64  Identities=22%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+-+++|++|+= +|......+...  .+|++|||.|.+.++.            ++++++.     .++......||+|
T Consensus        40 ~~~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll------------~~~i~F~-----~~~~~~~~~~DlI  100 (252)
T PF06690_consen   40 EEFKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELL------------NENIKFM-----EFRNGLEGNPDLI  100 (252)
T ss_pred             cccceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHh------------cCCCcee-----eccCCCCCCCCEE
Confidence            344699999984 555555555533  3899999999888765            2455544     3444445689998


Q ss_pred             EEeCC
Q 019699          180 IGDLA  184 (337)
Q Consensus       180 i~D~~  184 (337)
                      | |.+
T Consensus       101 I-D~T  104 (252)
T PF06690_consen  101 I-DTT  104 (252)
T ss_pred             E-ECC
Confidence            8 776

The function of this family is unknown.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=84.64  E-value=13  Score=35.25  Aligned_cols=78  Identities=23%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             CeEEEEecch-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          104 KTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       104 ~~VLiIG~G~-G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++|.+||+|. |......+...+. .++..+|++++..+....-+.... .+.....++..+|... +    ...|+||+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence            4799999985 3333333333333 489999999887654333222110 0112334555555332 2    46999999


Q ss_pred             eCCCCC
Q 019699          182 DLADPI  187 (337)
Q Consensus       182 D~~dp~  187 (337)
                      -...|.
T Consensus        75 tag~~~   80 (306)
T cd05291          75 TAGAPQ   80 (306)
T ss_pred             ccCCCC
Confidence            887654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=84.59  E-value=17  Score=35.00  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=44.5

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVI-NDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv  178 (337)
                      +.++|.+||+|. |.....++...+...+..+|++++..+ ++. +.. ....+.+...++.. +|- +-+    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~-~~l----~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNY-EDI----AGSDV   77 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCH-HHh----CCCCE
Confidence            346899999997 444444444444456999999998642 111 110 01112233456664 663 222    35799


Q ss_pred             EEEeCCCC
Q 019699          179 IIGDLADP  186 (337)
Q Consensus       179 Ii~D~~dp  186 (337)
                      ||.-...+
T Consensus        78 VI~tag~~   85 (321)
T PTZ00082         78 VIVTAGLT   85 (321)
T ss_pred             EEECCCCC
Confidence            99876544

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=84.56  E-value=9.5  Score=35.55  Aligned_cols=121  Identities=14%  Similarity=0.225  Sum_probs=85.1

Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeEEEEeC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDVIIGDL  183 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDvIi~D~  183 (337)
                      |-.=.|+=-+++.+++-  ..++...|+-|.=..+.++.|.      .|.|+++..+||..-+...   +++=-+|++|+
T Consensus        93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP  164 (279)
T COG2961          93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP  164 (279)
T ss_pred             cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence            77778888899998873  5789999999999999998886      3789999999998877653   46678999998


Q ss_pred             CCCCCCCCCcCCch--HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699          184 ADPIEGGPCYKLYT--KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       184 ~dp~~~~p~~~L~t--~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~  246 (337)
                      +....     .-|.  .+-++. ..++ -++|+++++.  |  ..+.+.++.+.+.+++. .+.+.
T Consensus       165 PfE~~-----~eY~rvv~~l~~-~~kR-f~~g~yaiWY--P--ik~r~~~~~f~~~L~~~~i~kiL  219 (279)
T COG2961         165 PFELK-----DEYQRVVEALAE-AYKR-FATGTYAIWY--P--IKDRRQIRRFLRALEALGIRKIL  219 (279)
T ss_pred             Ccccc-----cHHHHHHHHHHH-HHHh-hcCceEEEEE--e--ecchHHHHHHHHHHhhcCcccee
Confidence            64321     1111  112222 1111 2589999985  2  34667788888888876 33433

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.52  E-value=2.6  Score=40.43  Aligned_cols=145  Identities=14%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC-
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-  184 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-  184 (337)
                      |+++-+|.|++..-+.+. +..-+.++|+|+..++.-+.+++.          +++.+|..+.-...-...|+++..++ 
T Consensus         1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC   69 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC   69 (315)
T ss_pred             CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence            578888888887766553 455567899999999998887642          34567776654332346899998876 


Q ss_pred             CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC--CChhHHHHHHHHHhhhcCceeEEEeeccc
Q 019699          185 DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQVFKYVVPYSAHIPS  254 (337)
Q Consensus       185 dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~--~~~~~~~~i~~~l~~vF~~v~~~~~~vP~  254 (337)
                      .+.. .+       +-..| -.+|++. + +.++|.=+++=|.  +...  .....+..+.+.|++.-=.+......-..
T Consensus        70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~d  144 (315)
T TIGR00675        70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKD  144 (315)
T ss_pred             cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHH
Confidence            1211 11       11122 2456664 4 4678875555454  2111  12345666777776542122222222223


Q ss_pred             cC----CceEEEEEec
Q 019699          255 FA----DTWGWIMASD  266 (337)
Q Consensus       255 ~~----~~~~~~~as~  266 (337)
                      |+    ..=.|++|++
T Consensus       145 yGvPQ~R~R~f~ia~r  160 (315)
T TIGR00675       145 FGVPQNRERIYIVGFR  160 (315)
T ss_pred             CCCCCCccEEEEEEEe
Confidence            32    2245788876

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=84.39  E-value=2.3  Score=38.08  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=42.6

Q ss_pred             HHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699           96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus        96 ~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      |++..-+.++||+||+|.=+.  ++.+++.  ..+|++|+-+  +++.+++.+           .++++...   .|...
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~-----------~~i~~~~~---~~~~~   66 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE-----------GKIRWKQK---EFEPS   66 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC-----------CCEEEEec---CCChh
Confidence            565666789999999986554  3455554  3688888532  333333322           23444322   22222


Q ss_pred             cCCceeEEEEeCCCC
Q 019699          172 RKESYDVIIGDLADP  186 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp  186 (337)
                      .-..+|+||+-..++
T Consensus        67 ~l~~adlViaaT~d~   81 (202)
T PRK06718         67 DIVDAFLVIAATNDP   81 (202)
T ss_pred             hcCCceEEEEcCCCH
Confidence            225689988876543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=84.36  E-value=14  Score=35.38  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             eEEEEecch-hHHHHH-HHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCC-CCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGE-GSTARE-ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~-G~~~~~-ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d-~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +|-+||+|. |..... ++...-..++..+|++++..+.-..-+.. ...+.. .++++..+|-. -+    +.-|+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~-~~~~~~~~~~~i~~~~y~-~~----~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHH-ATALTYSTNTKIRAGDYD-DC----ADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHh-hhccCCCCCEEEEECCHH-Hh----CCCCEEEE
Confidence            578999986 555433 44444346899999987654332222221 112222 35777777732 22    45899999


Q ss_pred             eCCCCC
Q 019699          182 DLADPI  187 (337)
Q Consensus       182 D~~dp~  187 (337)
                      -+-.|.
T Consensus        75 taG~~~   80 (307)
T cd05290          75 TAGPSI   80 (307)
T ss_pred             CCCCCC
Confidence            776554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=84.35  E-value=34  Score=31.63  Aligned_cols=159  Identities=14%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCC
Q 019699          116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL  195 (337)
Q Consensus       116 ~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L  195 (337)
                      +++.+.+.....+|.++|.++...+.|++.--.          .-...+ .+.+    ..+|+||+-.+-         -
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~----------~~~~~~-~~~~----~~~DlvvlavP~---------~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGII----------DEASTD-IEAV----EDADLVVLAVPV---------S   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS----------SEEESH-HHHG----GCCSEEEE-S-H---------H
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe----------eeccCC-HhHh----cCCCEEEEcCCH---------H
Confidence            356666665568999999999999998764111          111222 3334    346999998751         1


Q ss_pred             chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC--------------ceEE
Q 019699          196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--------------TWGW  261 (337)
Q Consensus       196 ~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~--------------~~~~  261 (337)
                      ...++++. +...|+++.+++ -.++.    ..    .+.+.+++..|.-..|...=|.+|.              .-.+
T Consensus        57 ~~~~~l~~-~~~~~~~~~iv~-Dv~Sv----K~----~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~  126 (258)
T PF02153_consen   57 AIEDVLEE-IAPYLKPGAIVT-DVGSV----KA----PIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNW  126 (258)
T ss_dssp             HHHHHHHH-HHCGS-TTSEEE-E--S-----CH----HHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEE
T ss_pred             HHHHHHHH-hhhhcCCCcEEE-EeCCC----CH----HHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeE
Confidence            24577887 678888876654 55432    12    3344555555511112111133321              2345


Q ss_pred             EEEecCCCC-CCHHHHHHHHHhccCCCceeeCHHHHHHhc----cCcHHHHHh
Q 019699          262 IMASDSPFT-LSAEELDMKVKKNIKGENRYLDGKTISSSS----TLSKAVRKS  309 (337)
Q Consensus       262 ~~as~~p~~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f----~lP~~~~~~  309 (337)
                      +++-....+ -..+.+.+ +-+.+....-+.+++-|-.++    .||-.+--.
T Consensus       127 il~p~~~~~~~~~~~~~~-l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~a  178 (258)
T PF02153_consen  127 ILCPGEDTDPEALELVEE-LWEALGARVVEMDAEEHDRIMAYVSHLPHLLASA  178 (258)
T ss_dssp             EEEECTTS-HHHHHHHHH-HHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHH
T ss_pred             EEeCCCCChHHHHHHHHH-HHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence            555332111 01122222 223334466788999997765    455544433

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=84.22  E-value=6  Score=40.92  Aligned_cols=79  Identities=25%  Similarity=0.430  Sum_probs=56.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--Hhh--cCC
Q 019699          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES--RKE  174 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~--~~~  174 (337)
                      ..|+||+-|+| |+++.++.+.   ...+++.+.|.|+.-+..-++.+...   +.+.++..+++|.++.  +..  .+-
T Consensus       249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence            45788887765 7776665543   34589999999999887766665432   2357899999999865  222  235


Q ss_pred             ceeEEEEeCC
Q 019699          175 SYDVIIGDLA  184 (337)
Q Consensus       175 ~yDvIi~D~~  184 (337)
                      +-|+|+.-+.
T Consensus       325 kvd~VfHAAA  334 (588)
T COG1086         325 KVDIVFHAAA  334 (588)
T ss_pred             CCceEEEhhh
Confidence            6999999886

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=84.21  E-value=9.5  Score=36.13  Aligned_cols=98  Identities=20%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~yD  177 (337)
                      ....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++ ...      .-+.....+ .+-+.+ . ...+|
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d  233 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD  233 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence            3478999998653 23345566766655599999999988888764 211      001111122 222222 2 24699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||--...     +       ..+.. ..+.|+++|.+++-.
T Consensus       234 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g  262 (339)
T cd08239         234 VAIECSGN-----T-------AARRL-ALEAVRPWGRLVLVG  262 (339)
T ss_pred             EEEECCCC-----H-------HHHHH-HHHHhhcCCEEEEEc
Confidence            98843321     1       22233 356899999988653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08618 ornithine cyclodeaminase; Validated

Probab=84.10  E-value=28  Score=33.44  Aligned_cols=115  Identities=18%  Similarity=0.281  Sum_probs=67.5

Q ss_pred             CeEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEEC
Q 019699           58 QDIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI  134 (337)
Q Consensus        58 q~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEi  134 (337)
                      +.|.+++... |+. ..+||...+.-+..-  .-.++ .-.+..+.++++++||+|.=+  .+..++...+..+|.+++.
T Consensus        85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa--~sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r  160 (325)
T PRK08618         85 GTVILSDFET-GEVLAILDGTYLTQIRTGA--LSGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR  160 (325)
T ss_pred             EEEEEEeCCC-CceEEEEccchhhhhhHHH--HHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence            3577777765 554 467887766644321  11111 233445778999999998543  2334444456789999999


Q ss_pred             ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       135 d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      +++-.+...+.+...   + .-++. ...|..+.+    ...|+|++-.+.
T Consensus       161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s  202 (325)
T PRK08618        161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA  202 (325)
T ss_pred             CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence            987665444433211   0 11222 346655555    358999987754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=83.95  E-value=8.8  Score=35.93  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      .+..+||+.|+  |-|..+..+++..+ .+|.++.-+++-.+.++++ +..      .-+.....|..+.+.. ..+.+|
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence            45679999984  56667777888765 4788999888888888873 321      0011111233333332 235699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|+ |...    +        +.++. ..+.|+++|.++.-
T Consensus       214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~  240 (329)
T cd08294         214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC  240 (329)
T ss_pred             EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence            888 5431    1        12344 46789999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=83.95  E-value=8.8  Score=39.40  Aligned_cols=104  Identities=17%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             CCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCC-------CCCeEEEEccHH
Q 019699          102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS-------DPRLELVINDAR  166 (337)
Q Consensus       102 ~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~-------d~rv~v~~~D~~  166 (337)
                      +.++|.+||+|  +.+++..+++.  ..+|+++|.+++.++.+++....      ..+.+.       -.|++.. .|..
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~   80 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH   80 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence            45789999999  34566666664  36899999999999876554321      011110       0233332 3322


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                       -+    ..-|+||.-.++..       -..+++|+. +.+.++++-+++.|+.+
T Consensus        81 -~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt  122 (503)
T TIGR02279        81 -AL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS  122 (503)
T ss_pred             -Hh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence             22    35799998877532       124567777 67888888888878754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=83.91  E-value=1.9  Score=41.45  Aligned_cols=109  Identities=15%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh------------hh---ccCC---------------
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL------------VV---NKEA---------------  152 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f------------~~---~~~~---------------  152 (337)
                      +-++|+=|+|.|.++.+++.....  +-+=|.+--|+=...=-+            |+   ..+.               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            568999999999999999886533  333366554432211000            00   0000               


Q ss_pred             --C----CCCCeEEEEccHHHHHhhcC--CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          153 --F----SDPRLELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       153 --~----~d~rv~v~~~D~~~~l~~~~--~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                        .    .-..+.+..||..++.....  +.||+|+...+-..    +...  .|+++. +.+.|+|||+.+ |.|+
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT----a~Ni--leYi~t-I~~iLk~GGvWi-NlGP  297 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT----AHNI--LEYIDT-IYKILKPGGVWI-NLGP  297 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec----hHHH--HHHHHH-HHHhccCCcEEE-eccc
Confidence              0    01123445677666554432  57999988866221    1222  388998 899999999875 7654

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=83.76  E-value=8.4  Score=36.43  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD  177 (337)
                      .+..+||+.|+| .|..+..+++..+...+.+++.++.-.+.++++- .      +.-+.....+..+.+.+  ..+.+|
T Consensus       166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d  238 (347)
T cd05278         166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVD  238 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence            346789886654 2455666777665457888888888888777642 1      11111112233333433  125699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|+ |...    +       .+.++. ..+.|+++|.++.-
T Consensus       239 ~vl-d~~g----~-------~~~~~~-~~~~l~~~G~~v~~  266 (347)
T cd05278         239 CVI-EAVG----F-------EETFEQ-AVKVVRPGGTIANV  266 (347)
T ss_pred             EEE-EccC----C-------HHHHHH-HHHHhhcCCEEEEE
Confidence            887 4321    1       134454 56789999988753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=83.75  E-value=38  Score=36.19  Aligned_cols=92  Identities=23%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -++|.+||+|.  +.+++.+.+.....+|.++|.+++-++.++++ ...     +.    ...|..+.+    ...|+||
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~-----~~----~~~~~~~~~----~~aDvVi   68 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVI-----DR----GEEDLAEAV----SGADVIV   68 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCC-----Cc----ccCCHHHHh----cCCCEEE
Confidence            36899999884  33445554432124699999999887776653 110     00    112323333    3579999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +-.+..         ...+.++. ++..++++- +++..
T Consensus        69 lavp~~---------~~~~vl~~-l~~~~~~~~-ii~d~   96 (735)
T PRK14806         69 LAVPVL---------AMEKVLAD-LKPLLSEHA-IVTDV   96 (735)
T ss_pred             ECCCHH---------HHHHHHHH-HHHhcCCCc-EEEEc
Confidence            886521         23566676 677777654 44444

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=83.66  E-value=2.1  Score=42.86  Aligned_cols=54  Identities=15%  Similarity=0.388  Sum_probs=41.5

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI  162 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~  162 (337)
                      -||+||.|+|.+...+++.. ...|+++|.=..|+++|++-...+  ++ .++++++.
T Consensus        69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~-SdkI~vIn  122 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GM-SDKINVIN  122 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CC-ccceeeec
Confidence            57899999999988887764 678999999999999999976433  22 23555554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.60  E-value=38  Score=31.57  Aligned_cols=88  Identities=25%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             eEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +|.+||+|.  |.+++.+.+.  ..+|.++|.+++.++.+++.-.          +.....+. +.+    ...|+||+-
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence            689999983  5566666654  2579999999988887765310          11111121 222    457999998


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .+...         ..++++. +...++++- +++..+
T Consensus        65 vp~~~---------~~~~~~~-l~~~l~~~~-ii~d~~   91 (279)
T PRK07417         65 LPIGL---------LLPPSEQ-LIPALPPEA-IVTDVG   91 (279)
T ss_pred             CCHHH---------HHHHHHH-HHHhCCCCc-EEEeCc
Confidence            76321         2356676 667777664 445654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=83.46  E-value=10  Score=35.73  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhc-CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESR-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~-~~~y  176 (337)
                      .+..+||+.|+  |-|..+..+++..+ .+|.++.-+++-.+.++++ +..      .-+.... .+..+.++.. .+.+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence            45689999984  56777778888765 4788888888888888763 221      0001111 1223333332 3469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|+ |..     +.       +.+.. ..++|+++|.++.-.
T Consensus       209 dvv~-d~~-----G~-------~~~~~-~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       209 DCYF-DNV-----GG-------EFSNT-VIGQMKKFGRIAICG  237 (325)
T ss_pred             EEEE-ECC-----CH-------HHHHH-HHHHhCcCcEEEEec
Confidence            9988 543     11       11234 457899999998643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06223 malate dehydrogenase; Reviewed

Probab=83.35  E-value=16  Score=34.54  Aligned_cols=78  Identities=26%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             CeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEE
Q 019699          104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (337)
Q Consensus       104 ~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+|.+||+|. |......+...+..+|..+|++++..+....-+... ........++.. +|- +-+    ..-|+||+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~d~-~~~----~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-APVEGFDTKITGTNDY-EDI----AGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-hhhcCCCcEEEeCCCH-HHH----CCCCEEEE
Confidence            5899999997 665555444333228999999998654321111110 011111234443 443 222    34699998


Q ss_pred             eCCCCC
Q 019699          182 DLADPI  187 (337)
Q Consensus       182 D~~dp~  187 (337)
                      -...|.
T Consensus        77 ~~~~p~   82 (307)
T PRK06223         77 TAGVPR   82 (307)
T ss_pred             CCCCCC
Confidence            775554

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=83.18  E-value=12  Score=37.02  Aligned_cols=103  Identities=19%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             CCCeEEEEe--cchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE----ccHHHHHhhc-
Q 019699          102 NPKTIFIMG--GGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELESR-  172 (337)
Q Consensus       102 ~p~~VLiIG--~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~----~D~~~~l~~~-  172 (337)
                      ...+||++|  ++-|..+..+++..  +..+|++++.+++-++.+++.++.... .......++.    .|..+.+.+. 
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t  253 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT  253 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence            347899997  44666777777764  235799999999999999986432110 0000111121    2344444432 


Q ss_pred             -CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       173 -~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       ...+|+|+.....     +       ..++. .-+.|+++|.+++.
T Consensus       254 ~g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~  287 (410)
T cd08238         254 GGQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF  287 (410)
T ss_pred             CCCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence             2469988865421     1       22333 45678988866544

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=82.76  E-value=13  Score=32.25  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+|+.||+=+-.....- ...+..++...|+|...-....+.|-...  ++.|         .++.+...++||+||
T Consensus        24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv   91 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV   91 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence            45689999998764443322 13456789999999977664433111110  0111         122222357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHH----HHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFY----EFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~----~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++-          .+.|..    +. ++..+++++.++.-
T Consensus        92 ~DPPF----------l~~ec~~k~a~t-i~~L~k~~~kii~~  122 (162)
T PF10237_consen   92 IDPPF----------LSEECLTKTAET-IRLLLKPGGKIILC  122 (162)
T ss_pred             ECCCC----------CCHHHHHHHHHH-HHHHhCccceEEEe
Confidence            99853          223333    33 45556777766643

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PLN02740 Alcohol dehydrogenase-like

Probab=82.71  E-value=13  Score=36.21  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~  145 (337)
                      ....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~  242 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM  242 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence            4567999998753 33445666766655799999999999999774

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.62  E-value=10  Score=35.97  Aligned_cols=86  Identities=14%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCceeEE
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yDvI  179 (337)
                      .+++|++||.|.-+. +...++..+ .+|++++.++.-.+.++.. +          .+.+ ..+..+.+    ..+|+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV  214 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII  214 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence            578999999985433 333444444 5999999998766655542 1          1111 12222333    469999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      |.-.+  .      .+.+.+.+     +.++++++++
T Consensus       215 I~t~p--~------~~i~~~~l-----~~~~~g~vII  238 (296)
T PRK08306        215 FNTIP--A------LVLTKEVL-----SKMPPEALII  238 (296)
T ss_pred             EECCC--h------hhhhHHHH-----HcCCCCcEEE
Confidence            98542  1      23344433     4577877665

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=82.51  E-value=2.4  Score=37.90  Aligned_cols=66  Identities=23%  Similarity=0.350  Sum_probs=45.1

Q ss_pred             cCCCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+++++||++|.- +|....+++..  ..+|+++||.|.+-    .+++        +++++.     +-+.-..+.||
T Consensus        41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r----~~lp--------~~v~Fr-----~~~~~~~G~~D  101 (254)
T COG4017          41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMR----GFLP--------NNVKFR-----NLLKFIRGEVD  101 (254)
T ss_pred             cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHH----hcCC--------CCccHh-----hhcCCCCCcee
Confidence            35789999999985 67777777764  57899999999653    3332        233332     22333458899


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +|+ |++
T Consensus       102 liv-DlT  107 (254)
T COG4017         102 LIV-DLT  107 (254)
T ss_pred             EEE-ecc
Confidence            987 776

>PRK06141 ornithine cyclodeaminase; Validated

Probab=82.24  E-value=47  Score=31.70  Aligned_cols=113  Identities=17%  Similarity=0.237  Sum_probs=65.2

Q ss_pred             eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEEECC
Q 019699           59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDID  135 (337)
Q Consensus        59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~VEid  135 (337)
                      -|.+++... |+. ..+||...+.-+..-.  -.+. .-.+..++.++|++||+|.=+...  .++...+..+|.+...+
T Consensus        84 ~v~l~d~~t-G~p~ai~d~~~lT~~RTaa~--sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs  159 (314)
T PRK06141         84 TYLLFDGRT-GEPLALVDGTELTARRTAAA--SALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD  159 (314)
T ss_pred             EEEEEECCC-CCEEEEEcCcchhcchhHHH--HHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            466777665 554 4678887776554211  1111 123445788999999997544332  23333467899999999


Q ss_pred             hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      ++-.+...+.+...     ..++.. ..+..+-+    ...|+|++-.+.
T Consensus       160 ~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~s  199 (314)
T PRK06141        160 PAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATLS  199 (314)
T ss_pred             HHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeCC
Confidence            87655444433221     112332 35554444    458999665543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=82.13  E-value=9.8  Score=36.45  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~  145 (337)
                      ....+||++|+|. |..+..+++..+. +|++++.+++-.+.++++
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~  209 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF  209 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence            4568999999865 4556667776654 799999999999888764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=81.90  E-value=25  Score=33.71  Aligned_cols=109  Identities=18%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             CCCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv  178 (337)
                      ...+|.+||+|. |.. +..++...-..++..+|++++..+....-+... ..+... .+++. +|..+ +    ..-|+
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~-~~v~~~~dy~~-~----~~adi   74 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHG-SAFLKN-PKIEADKDYSV-T----ANSKV   74 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHh-hccCCC-CEEEECCCHHH-h----CCCCE
Confidence            346899999874 322 333333344468999999886544322222211 112222 25664 66443 3    45799


Q ss_pred             EEEeCCCCCCCCCC-cCCch------HHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~t------~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-+-.+...+.. ..|+.      +++-+. +++ -+|+|++++-+
T Consensus        75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~-i~~-~~p~~~vivvs  120 (312)
T cd05293          75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPK-LVK-YSPNAILLVVS  120 (312)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-hCCCcEEEEcc
Confidence            99876544421111 01111      223333 333 38899876543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.89  E-value=2.5  Score=41.25  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc----C----CCcEEEEEECChHHHHHHHhhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~----~----~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      .|.|..+++||.|.|.+++-+++.    .    ...++..||++|+..+.-|+.+.
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~  130 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK  130 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence            366789999999999998777764    1    46789999999999988887764

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=81.75  E-value=14  Score=35.05  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CCCCeEEEEecchhHHHHHH-HhcCCCcEEEEEECChH
Q 019699          101 PNPKTIFIMGGGEGSTAREI-LRHKTVEKVVMCDIDEE  137 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~l-l~~~~~~~v~~VEid~~  137 (337)
                      ...++||+||+|+-+-+... +...+..+|+++..+++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            35689999999765433222 22246789999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=81.53  E-value=20  Score=34.19  Aligned_cols=107  Identities=18%  Similarity=0.277  Sum_probs=56.1

Q ss_pred             eEEEEecch-hHHH-HHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~-G~~~-~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +|.+||+|. |... ..++......++..+|++++..+. +......  ..+. +..++..+|-.. +    ...|+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~--~~~~-~~~~i~~~d~~~-l----~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG--TPFV-KPVRIYAGDYAD-C----KGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc--cccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence            689999986 4333 333343324689999999876652 3222111  1122 224555555322 2    45799999


Q ss_pred             eCCCCCCCCCCc-CC--chHHHHHHHhc--cccCCCceEEEeC
Q 019699          182 DLADPIEGGPCY-KL--YTKSFYEFVVK--PRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~-~L--~t~ef~~~~~~--~~L~p~Gvlv~~~  219 (337)
                      -+..+...+... .|  .+...++.++.  +...|+|++++-.
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            887665322110 01  12233333111  2366889877543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.38  E-value=5.6  Score=38.33  Aligned_cols=124  Identities=19%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-C-ceeEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~-~yDvIi  180 (337)
                      ..+++++-+|.|++..-+... +..-+.++||||..++.-+.+|+.         -.++..|..++..+.- . .+|+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli   72 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI   72 (328)
T ss_pred             CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence            357999999999888766664 356788999999999999888753         3456677776654432 2 789999


Q ss_pred             EeCCC-CCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCC-hhHHHHHHHHHhhh
Q 019699          181 GDLAD-PIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV  241 (337)
Q Consensus       181 ~D~~d-p~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~-~~~~~~i~~~l~~v  241 (337)
                      --++= +.. .+       +-..| ..+|.+. + ..++|.-+++=|.  |++..+ ...++.+.+.|++.
T Consensus        73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~-I-~~~~P~~fv~ENV--~gl~~~~~~~~~~i~~~L~~~  138 (328)
T COG0270          73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL-I-EQLRPKFFVLENV--KGLLSSKGQTFDEIKKELEEL  138 (328)
T ss_pred             eCCCCcchhhcCcccCCcCcccee-eHHHHHH-H-HhhCCCEEEEecC--chHHhcCchHHHHHHHHHHHc
Confidence            88762 111 11       21223 3577775 3 5788833333233  333322 34677777777766

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=81.36  E-value=2.5  Score=38.50  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=53.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hh-hcCCceeEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~-~~~~~yDvIi  180 (337)
                      +-++|+||+=+......  . .+.-.|+.+|+++.-                 |  .|...|..+. +. ...++||+|.
T Consensus        52 ~lrlLEVGals~~N~~s--~-~~~fdvt~IDLns~~-----------------~--~I~qqDFm~rplp~~~~e~FdvIs  109 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS--T-SGWFDVTRIDLNSQH-----------------P--GILQQDFMERPLPKNESEKFDVIS  109 (219)
T ss_pred             cceEEeecccCCCCccc--c-cCceeeEEeecCCCC-----------------C--CceeeccccCCCCCCcccceeEEE
Confidence            46999999975443332  2 234569999997722                 2  2334443332 21 1357899998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCce-----EEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv-----lv~~~  219 (337)
                      +.+--..  -| ..--.-+..+. +.+.|+|+|.     +.+-.
T Consensus       110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl  149 (219)
T PF11968_consen  110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL  149 (219)
T ss_pred             EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence            8874111  11 11223467777 7899999999     65544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=81.34  E-value=3  Score=41.00  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE-
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII-  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi-  180 (337)
                      ++.+++++|+|-|...+++.... .+.++.+++++.-+..+.......  .. +.+..+.+.|..+-. ..+..||.+- 
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l-~~k~~~~~~~~~~~~-fedn~fd~v~~  184 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YL-DNKCNFVVADFGKMP-FEDNTFDGVRF  184 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--Hh-hhhcceehhhhhcCC-CCccccCcEEE
Confidence            34589999999999999988764 578888888887776666553211  11 233344666543321 2357799874 


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|..-.   .|    .....|+. +.+.++|||+++..
T Consensus       185 ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  185 LEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK  214 (364)
T ss_pred             Eeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence            455422   12    23568888 78999999999863

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=81.30  E-value=9.8  Score=35.64  Aligned_cols=98  Identities=21%  Similarity=0.324  Sum_probs=58.8

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ +..      .-+.....+..+.++. ..+.+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence            446799998765 3666777777664 5699999999988888663 211      0011111122222322 2467998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++.-..      .      .+.++. +.+.|+++|.++.-.
T Consensus       236 vid~~g------~------~~~~~~-~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVG------T------QPTFED-AQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCC------C------HHHHHH-HHHHhhcCCEEEEEC
Confidence            774321      1      123455 568899999988653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PLN02256 arogenate dehydrogenase

Probab=81.04  E-value=52  Score=31.38  Aligned_cols=169  Identities=12%  Similarity=0.052  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      +...+|.+||+|  +|.+++.+.+. + .+|.+++.++. .+.++++           .+.. ..|..+.+.   ...|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv   95 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV   95 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence            456799999988  34455555543 2 57999999874 3444332           1111 344444432   34799


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD  257 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~  257 (337)
                      ||+-.+..         ...++++. + ...++++. +++..++.     +   ..+.+.+++.++.-..|...-|.++.
T Consensus        96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~Sv-----K---~~~~~~~~~~l~~~~~~V~~HPmaG~  156 (304)
T PLN02256         96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVLSV-----K---EFPKNLLLQVLPEEFDILCTHPMFGP  156 (304)
T ss_pred             EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecCCc-----h---HHHHHHHHHhCCCCCeEEecCCCCCC
Confidence            99976521         13455665 4 34577765 45565431     1   23455677666543234334455532


Q ss_pred             c--------eEEEEEecC--CCCCCHHHH--HHHHHhccCCCceeeCHHHHHHhccCcHHH
Q 019699          258 T--------WGWIMASDS--PFTLSAEEL--DMKVKKNIKGENRYLDGKTISSSSTLSKAV  306 (337)
Q Consensus       258 ~--------~~~~~as~~--p~~~~~~~l--~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~  306 (337)
                      .        -.++++...  |...+.+.+  .+++-+.+....-..+++-|-..++.-.++
T Consensus       157 e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShL  217 (304)
T PLN02256        157 ESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFI  217 (304)
T ss_pred             CCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhH
Confidence            1        112222110  111122221  122333344577889999998766543333

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=80.92  E-value=12  Score=35.41  Aligned_cols=96  Identities=17%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +..+||+.|+|+ |..+..+++..+..++++++.++...+.++++- .. ..++     ....+..... .....+|+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g-~~-~vi~-----~~~~~~~~~~-~~~~~vd~vl  236 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG-AD-ETVN-----LARDPLAAYA-ADKGDFDVVF  236 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-CC-EEEc-----CCchhhhhhh-ccCCCccEEE
Confidence            568999987765 556667777765557999999988888877642 11 0000     0001112222 1234599987


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .-..     +       ...++. +.+.|+++|.++.-
T Consensus       237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~  261 (339)
T cd08232         237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV  261 (339)
T ss_pred             ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence            5332     1       123344 56789999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=80.76  E-value=17  Score=30.23  Aligned_cols=76  Identities=21%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CeEEEEecchh---HHHHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HH---H
Q 019699          104 KTIFIMGGGEG---STAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AE---L  169 (337)
Q Consensus       104 ~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~---l  169 (337)
                      |.||+.|+++|   .+++.++++ +..+|..+.-+  .+-.+...+.+...     ..++.++..|..      ..   +
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   74 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV   74 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence            46788888644   234455554 45688888888  33333332222221     367788877742      22   2


Q ss_pred             hhcCCceeEEEEeCCC
Q 019699          170 ESRKESYDVIIGDLAD  185 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~d  185 (337)
                      .......|++|..+..
T Consensus        75 ~~~~~~ld~li~~ag~   90 (167)
T PF00106_consen   75 IKRFGPLDILINNAGI   90 (167)
T ss_dssp             HHHHSSESEEEEECSC
T ss_pred             cccccccccccccccc
Confidence            2234679999988764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=80.70  E-value=29  Score=33.53  Aligned_cols=143  Identities=12%  Similarity=0.059  Sum_probs=75.5

Q ss_pred             CCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHHHHhhhh---hccCCCC-CCCeEEEEccHHHHHhhcCC
Q 019699          101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFS-DPRLELVINDARAELESRKE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~a~~~f~---~~~~~~~-d~rv~v~~~D~~~~l~~~~~  174 (337)
                      ....+|.+||+|.-+.+  ..+.+ .+  .++.+..+++.++..++.-.   ....... .+++++ ..|..+-+    +
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~-~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~   76 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICAR-RG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N   76 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-CC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence            44568999999965543  33333 22  46777799998887775321   1000000 123332 34433333    4


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc-eEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP  253 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G-vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP  253 (337)
                      ..|+||+-.+.         .+.++.++. ++..|+++. ++.++-|-.  ....   ..+.+.++++++........-|
T Consensus        77 ~aDlVilavps---------~~~~~vl~~-i~~~l~~~~~vIsl~kGi~--~~t~---~~~se~i~~~l~~~~~~~l~GP  141 (341)
T PRK12439         77 CADVVVMGVPS---------HGFRGVLTE-LAKELRPWVPVVSLVKGLE--QGTN---MRMSQIIEEVLPGHPAGILAGP  141 (341)
T ss_pred             cCCEEEEEeCH---------HHHHHHHHH-HHhhcCCCCEEEEEEeCCc--CCCC---CcHHHHHHHHcCCCCeEEEECC
Confidence            57999988652         134677787 788888876 334444421  1112   2233455556654333334456


Q ss_pred             ccC-----Cc-eEEEEEec
Q 019699          254 SFA-----DT-WGWIMASD  266 (337)
Q Consensus       254 ~~~-----~~-~~~~~as~  266 (337)
                      .+.     +. ...++++.
T Consensus       142 ~~a~ev~~g~~t~~via~~  160 (341)
T PRK12439        142 NIAREVAEGYAAAAVLAMP  160 (341)
T ss_pred             CHHHHHHcCCCeEEEEEeC
Confidence            662     11 23566775

>PRK13699 putative methylase; Provisional

Probab=80.67  E-value=5.3  Score=36.52  Aligned_cols=46  Identities=15%  Similarity=0.090  Sum_probs=39.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      ..+..-||+--+|+|+++.++.+.  ..+..++||+++..+.+++.+.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~  206 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA  206 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence            356678999999999999988875  3679999999999999988764

>PRK06545 prephenate dehydrogenase; Validated

Probab=80.66  E-value=58  Score=31.67  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=50.8

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++|.+||+|  +|.+++.+.+..  ..+.+++.|+.-.+.++.. ..  +.. +    -...|..+.    -...|+||+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~-~~--~~~-~----~~~~~~~~~----~~~aDlVil   66 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARAL-GF--GVI-D----ELAADLQRA----AAEADLIVL   66 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHh-cC--CCC-c----ccccCHHHH----hcCCCEEEE
Confidence            479999998  456666666543  3566777777655554421 10  000 1    011222222    246899999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG  220 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~~  220 (337)
                      -.+..         ...++++. +.. .++++ .+++..+
T Consensus        67 avP~~---------~~~~vl~~-l~~~~l~~~-~ivtDv~   95 (359)
T PRK06545         67 AVPVD---------ATAALLAE-LADLELKPG-VIVTDVG   95 (359)
T ss_pred             eCCHH---------HHHHHHHH-HhhcCCCCC-cEEEeCc
Confidence            87531         13567777 565 47776 4555554

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=80.33  E-value=18  Score=36.18  Aligned_cols=99  Identities=22%  Similarity=0.305  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecchhH-H-HHHHHhcCCCcEEEEEECChHHHH-HHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~-~~~ll~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...++|+++|+|.=+ . ++.+.. .+..+|++++.+++-.+ +++++ +.       .  .+-..|..+.+    ..+|
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~~-g~-------~--~i~~~~l~~~l----~~aD  242 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKEL-GG-------E--AVKFEDLEEYL----AEAD  242 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHc-CC-------e--EeeHHHHHHHH----hhCC
Confidence            356899999986432 2 233333 45678999999986543 44432 11       0  11113333333    3699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +||.-...+      ..+.+.+.++. +. .-++.+.+++....|
T Consensus       243 vVi~aT~s~------~~ii~~e~l~~-~~-~~~~~~~~viDla~P  279 (417)
T TIGR01035       243 IVISSTGAP------HPIVSKEDVER-AL-RERTRPLFIIDIAVP  279 (417)
T ss_pred             EEEECCCCC------CceEcHHHHHH-HH-hcCCCCeEEEEeCCC
Confidence            999876533      24566776665 21 112345666665443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08507 prephenate dehydrogenase; Validated

Probab=80.07  E-value=37  Score=31.52  Aligned_cols=89  Identities=19%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             eEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +|.+||+|.  +.+++.+.+.....+|.++|.+++-.+.+++. +..     +     ...+..+ +.   + .|+||+-
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~-----~-----~~~~~~~-~~---~-aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV-----D-----EIVSFEE-LK---K-CDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC-----c-----ccCCHHH-Hh---c-CCEEEEe
Confidence            689999984  55666666543234799999999887766542 110     0     0112222 21   2 7999998


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      .+...         ..+.+.. +.. ++++.+++ ..++
T Consensus        66 vp~~~---------~~~~~~~-l~~-l~~~~iv~-d~gs   92 (275)
T PRK08507         66 IPVDA---------IIEILPK-LLD-IKENTTII-DLGS   92 (275)
T ss_pred             CcHHH---------HHHHHHH-Hhc-cCCCCEEE-ECcc
Confidence            76321         2455666 566 77776554 5543

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=80.05  E-value=20  Score=32.69  Aligned_cols=76  Identities=24%  Similarity=0.329  Sum_probs=51.8

Q ss_pred             EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-----ccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH
Q 019699          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE  202 (337)
Q Consensus       128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-----~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~  202 (337)
                      +|-.||=|+.|.++-++|....      |.++++-     +.|+..++...  -|+|++|.+-|...|       .+|+.
T Consensus         2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~G-------i~lL~   66 (224)
T COG4565           2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNG-------IELLP   66 (224)
T ss_pred             cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCcc-------HHHHH
Confidence            4778999999999999998643      4454432     34555665433  399999999776333       36777


Q ss_pred             HHhccccCCCceEEEeC
Q 019699          203 FVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       203 ~~~~~~L~p~Gvlv~~~  219 (337)
                      . ++..=-+..++++.+
T Consensus        67 ~-ir~~~~~~DVI~iTA   82 (224)
T COG4565          67 E-LRSQHYPVDVIVITA   82 (224)
T ss_pred             H-HHhcCCCCCEEEEec
Confidence            7 565555666776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
3anx_A	314	Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR		9e-60
1uir_A	314	Crystal Structure Of Polyamine Aminopropyltransfeas		3e-59
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		1e-41
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		3e-35
2o05_A	304	Human Spermidine Synthase Length = 304		5e-35
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		6e-35
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		6e-35
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		2e-34
1jq3_A	296	Crystal Structure Of Spermidine Synthase In Complex		1e-33
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		1e-30
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		5e-30
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		9e-27
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		1e-26
2e5w_A	280	Crystal Structure Of Spermidine Synthase From Pyroc		1e-26
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		1e-26

>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314

Iteration: 1
 Score =  227 bits (578), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 183/291 (62%), Gaps = 9/291 (3%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   QAG   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS--PFTLSAEELDMKVK 281
           + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+  P   S   ++ +++
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258
Query: 282 -KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSA 331
            +N+    R+L    + +   L K + ++L+ ET V T+ +  ++   G A
Sbjct: 259 ERNLA--LRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307

>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 182/291 (62%), Gaps = 9/291 (3%)
Query: 46  LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
           +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE+LVHPA+L HP PK 
Sbjct: 21  MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
           + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   ++ AF DPR  LVI+D
Sbjct: 81  VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
           ARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  LNP G+   Q G   
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQTG-MI 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS--PFTLSAEELDMKVK 281
           + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+  P   S   ++ +++
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258
Query: 282 -KNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSA 331
            +N+    R+L    + +   L K + ++L+ ET V T+ +  ++   G A
Sbjct: 259 ERNLA--LRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 28  KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
           K  W+E  + +     FA++++L+  +T +QD+ + +   FG+ + +DG +Q+ E DEFI
Sbjct: 10  KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 68
Query: 88  YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
           YHE + H  LL H + K + I+GGG+G+  RE+ RHK VE + M +ID  VV FC+ YL 
Sbjct: 69  YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128
Query: 148 -VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
             N  ++ DPR +LVI+D    +    +++DVII D  DPI  GP   L+T +FYE   K
Sbjct: 129 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYE-GCK 185
Query: 207 PRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD---TWGWIM 263
             LNP GIFV Q G   +     + S  +  L   F  V  Y A IP++     T+ W  
Sbjct: 186 RCLNPGGIFVAQNGVCFLQQEEAIDS--HRKLSHYFSDVGFYQAAIPTYYGGIMTFAWAT 243
Query: 264 ASDSPFTLSAE 274
            +D+   LS E
Sbjct: 244 DNDALRHLSTE 254

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 124/215 (57%), Gaps = 7/215 (3%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y E + H  L   PN
Sbjct: 61  SLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPN 120
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
           PK + ++GGG+G   RE+ RH ++E++  C+ID+ VV+  K +       + DPR+ LVI
Sbjct: 121 PKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
            D  A L++  E SYD +I D +DPI  GP  +L+ K F++ V +  L P G+  TQA  
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA-- 235
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF 255
             ++ H ++   I +  R++FK  V Y+   +P++
Sbjct: 236 ESLWLHXDIIEDIVSNCREIFKGSVNYAWTSVPTY 270

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 158/306 (51%), Gaps = 9/306 (2%)
Query: 11  SQANGADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180
Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248
            GP   L+ +S+Y+ ++K  L  +G+   Q     +  H ++   +    + +F  V   
Sbjct: 181 -GPAESLFKESYYQ-LMKTALKEDGVLCCQGECQWL--HLDLIKEMRQFCQSLFPVVAYA 236
Query: 249 SAHIPSF-ADTWGWIMASDSPFTLSAEELDMKVKKNI-KGENRYLDGKTISSSSTLSKAV 306
              IP++ +   G+++ S +P T   E +    ++ + + + +Y +     ++  L +  
Sbjct: 237 YCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFA 296
Query: 307 RKSLDN 312
           RK+L++
Sbjct: 297 RKALND 302

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 157/302 (51%), Gaps = 9/302 (2%)
Query: 15  GADAKNVALTGYRKSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKAL 72
           G D    +     +  W+ E   +      S  +  +LH   +RYQDI +  +K +G  L
Sbjct: 6   GPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVL 65
Query: 73  VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132
           V+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C
Sbjct: 66  VLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQC 125
Query: 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC 192
           +IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+  GP 
Sbjct: 126 EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPA 183
Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252
             L+ +S+Y+ ++K  L  +G+   Q     +  H ++   +    + +F  V      I
Sbjct: 184 ESLFKESYYQ-LMKTALKEDGVLCCQGECQWL--HLDLIKEMRQFCQSLFPVVAYAYCTI 240
Query: 253 PSF-ADTWGWIMASDSPFTLSAEELDMKVKKNI-KGENRYLDGKTISSSSTLSKAVRKSL 310
           P++ +   G+++ S +P T   E +    ++ + + + +Y +     ++  L +  RK+L
Sbjct: 241 PTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 300
Query: 311 DN 312
           ++
Sbjct: 301 ND 302

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 141/247 (57%), Gaps = 6/247 (2%)
Query: 30  CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
            WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YH
Sbjct: 3   LWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYH 62
Query: 90  ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
           E + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L   
Sbjct: 63  EMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
                DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L
Sbjct: 123 AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-AL 179
Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSP 268
             +GIFV Q      +   E+ + +   ++++F     Y+A+IP++ +  W + + S   
Sbjct: 180 KEDGIFVAQTD--NPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKY 237
Query: 269 FTLSAEE 275
             L+ E+
Sbjct: 238 DPLAVED 244

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 152/276 (55%), Gaps = 21/276 (7%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE LVHPA+L HP 
Sbjct: 16  AFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPK 75
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDPRLE 159
           PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++    EA  + + E
Sbjct: 76  PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE 134
Query: 160 ---LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
              L I D   E       +DVII D  DP+  GP   L+++ FY +V     NP GI+V
Sbjct: 135 KAKLTIGDG-FEFIKNNRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNP-GIYV 190
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMA--SDSPFTLSAE 274
           TQAG   +F+  E+ S  Y  +++VF  V  YS  +  +A  W +++    D  FT    
Sbjct: 191 TQAGSVYLFT-DELISA-YKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGDIDFT---- 244
Query: 275 ELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
           ++D +  K ++ E  Y D     +   + K +R++L
Sbjct: 245 KIDRERAKKLQLE--YYDPLMHETLFQMPKYIRETL 278

>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 8/286 (2%)
Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73
Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G   + L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGH-LFTEEFYQ-AC 191
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMA 264
              L  +G+F  +      F     F   Y  + +VF     Y   + ++ +  W +  A
Sbjct: 192 YDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249
Query: 265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
           S        ++ D +  +    E +Y + +   +S  L   V+K L
Sbjct: 250 SKG--IDPIKDFDPEKVRKFNKELKYYNEEVHVASFALPNFVKKEL 293

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 122/204 (59%), Gaps = 5/204 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  +  HP
Sbjct: 48  FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
           +PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L+L 
Sbjct: 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
             D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q   
Sbjct: 168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQG-- 222
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYV 245
             ++ H  + + +    R++F  V
Sbjct: 223 ESVWLHLPLIAHLVAFNRKIFPAV 246

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 31  WYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
           W+ EE   N +W     S  +  +L+   T++Q + + ++ P   +G    +DG +Q  +
Sbjct: 19  WFREE---NDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTD 75
Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQS 135
Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP--AGPASKLFGEAFY 193
Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF 255
           + V++  L P+GI   Q     I+   E+       +R+     V Y+  H+P++
Sbjct: 194 KDVLR-ILKPDGICCNQG--ESIWLDLELIEKXSRFIRETGFASVQYALXHVPTY 245

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 18  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 77
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 78  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 137
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 138 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 192
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
             ++ H      +    +++FK V   +  IP++
Sbjct: 193 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 226

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 17  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 76
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 77  EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 136
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 137 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 191
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
             ++ H      +    +++FK V   +  IP++
Sbjct: 192 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 225

>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 12/228 (5%)
Query: 43  SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
           +F +   +   ++ YQ I + +T+ FGK L IDG +Q     E  YHE LVHPA+L HPN
Sbjct: 17  AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPN 76
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDP-- 156
           P+ + I+GGG+G   RE+L+H+ VE+V+M +ID++V+E    Y+ ++    ++  SD   
Sbjct: 77  PRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHE 136
Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
           + +L+I D    +E     +DVII D  DP+  GP   L+++ FY+   +  LN  GI+V
Sbjct: 137 KGKLIIGDGVKFIEEN-SGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYRA-LNDPGIYV 192
Query: 217 TQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMA 264
           TQAG   +F  T+ F   Y  +R+VF  V  YS  +  +A  W +++ 
Sbjct: 193 TQAGSVYLF--TDEFLTAYRKMRKVFDKVYYYSFPVIGYASPWAFLVG 238

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 5/214 (2%)
Query: 42  WSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP 101
           +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF YHE + H  +    
Sbjct: 56  FSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSK 115
Query: 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161
            PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y       + D R+ + 
Sbjct: 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF 175
Query: 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
           I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    L P G  V Q   
Sbjct: 176 IEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA-LKPNGYCVAQC-- 230
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255
             ++ H      +    +++FK V   +  IP++
Sbjct: 231 ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	1e-139
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-129
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	1e-129
2o07_A	304	Spermidine synthase; structural genomics, structur	1e-129
2i7c_A	283	Spermidine synthase; transferase, structural genom	1e-126
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	1e-126
2pt6_A	321	Spermidine synthase; transferase, structural genom	1e-126
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	1e-124
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	1e-123
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	1e-121
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	1e-118
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	5e-94
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	2e-92
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	3e-47
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	9e-09
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	4e-04

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score =  395 bits (1018), Expect = e-139
 Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 7/305 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY   VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRL-VKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS- 267
           LNP G+   Q G   + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+ 
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAF 243

Query: 268 -PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIY 326
            P   S   ++ ++++      R+L    + +   L K + ++L+ ET V T+ +  ++ 
Sbjct: 244 DPAAFSEGVIEARIRER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVT 302

Query: 327 GYGSA 331
             G A
Sbjct: 303 PEGEA 307

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score =  369 bits (949), Expect = e-129
 Identities = 85/286 (29%), Positives = 138/286 (48%), Gaps = 8/286 (2%)

Query: 27  RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 14  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 74  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP   G    L+T+ FY+   
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACY 192

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMA 264
              L  +G+F  +      F     F   Y  + +VF     Y   + ++ +  W +  A
Sbjct: 193 D-ALKEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249

Query: 265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
           S        ++ D +  +    E +Y + +   +S  L   V+K L
Sbjct: 250 SKGI--DPIKDFDPEKVRKFNKELKYYNEEVHVASFALPNFVKKEL 293

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score =  369 bits (950), Expect = e-129
 Identities = 85/308 (27%), Positives = 155/308 (50%), Gaps = 9/308 (2%)

Query: 11  SQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPF 68
           S   G D    +     +  W+ E          S  +  +LH   +RYQDI +  +K +
Sbjct: 2   SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61

Query: 69  GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
           G  LV+DG +Q  E DEF Y E + +  L  HPNP+ + I+GGG+G   RE+++H +VE 
Sbjct: 62  GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121

Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
           VV C+IDE+V++  K +L      +S  +L L + D    ++  ++++DVII D +DP+ 
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180

Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248
            GP   L+ +S+Y+  +K  L  +G+   Q      + H ++   +    + +F  V   
Sbjct: 181 -GPAESLFKESYYQL-MKTALKEDGVLCCQGEC--QWLHLDLIKEMRQFCQSLFPVVAYA 236

Query: 249 SAHIPSF-ADTWGWIMASDSPFTLSAEELDMKVKKNIKGEN-RYLDGKTISSSSTLSKAV 306
              IP++ +   G+++ S +P T   E +    ++ +     +Y +     ++  L +  
Sbjct: 237 YCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFA 296

Query: 307 RKSLDNET 314
           RK+L++ +
Sbjct: 297 RKALNDVS 304

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score =  363 bits (934), Expect = e-126
 Identities = 82/285 (28%), Positives = 145/285 (50%), Gaps = 10/285 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 5   WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 65  HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS 267
           L P G  V Q     ++ H      +    +++FK V   +  IP++     G +  S +
Sbjct: 182 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 239

Query: 268 PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN 312
                  + + K++     + +Y + +  S++  L   + K ++N
Sbjct: 240 D--TGLTKPNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIEN 282

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score =  361 bits (929), Expect = e-126
 Identities = 86/281 (30%), Positives = 151/281 (53%), Gaps = 11/281 (3%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY  + K  L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-ALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSPF 269
            +GIFV Q      +   E+ + +   ++++F     Y+A+IP++ +  W + + S    
Sbjct: 181 EDGIFVAQTDN--PWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD 238

Query: 270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
            L+ E+      +    E +Y       ++  L K V   +
Sbjct: 239 PLAVED-----SRFFDIETKYYTKDIHKAAFVLPKFVSDLI 274

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score =  362 bits (932), Expect = e-126
 Identities = 82/285 (28%), Positives = 145/285 (50%), Gaps = 10/285 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E         +S  +  IL+  +++YQ++ + ++  +GK LV+DG +Q  E DEF Y
Sbjct: 43  WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
           HE + H  +     PK + ++GGG+G   RE+ ++K+VE + +C+IDE V+E  K Y   
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               + D R+ + I DA   LE+   +YDVII D +DPI  GP   L+ ++FYE +    
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 219

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS 267
           L P G  V Q     ++ H      +    +++FK V   +  IP++     G +  S +
Sbjct: 220 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 277

Query: 268 PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN 312
                  + + K++     + +Y + +  S++  L   + K ++N
Sbjct: 278 D--TGLTKPNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIEN 320

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score =  358 bits (921), Expect = e-124
 Identities = 81/283 (28%), Positives = 149/283 (52%), Gaps = 7/283 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
                      +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E
Sbjct: 37  QEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQE 96

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H  +  HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L    
Sbjct: 97  MLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS 156

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             FS P+L+L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE  ++  L 
Sbjct: 157 CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYEL-LRDALK 213

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMASDSPF 269
            +GI  +Q     ++ H  + + +    R++F  V    + + ++   + G+++ + +  
Sbjct: 214 EDGILSSQGES--VWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNAN 271

Query: 270 TLSAEELDMKVKKNIKGEN-RYLDGKTISSSSTLSKAVRKSLD 311
                       + IK  N R+ + +   ++  L + V+ +L+
Sbjct: 272 RDVTTPARTLTAEQIKALNLRFYNSEVHKAAFVLPQFVKNALE 314

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score =  354 bits (911), Expect = e-123
 Identities = 84/286 (29%), Positives = 147/286 (51%), Gaps = 17/286 (5%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
            + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE
Sbjct: 4   AFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++ 
Sbjct: 64  PLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDN 122

Query: 151 EAF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204
                       + +L I D    ++     +DVII D  DP+  GP   L+++ FY +V
Sbjct: 123 GLLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYV 179

Query: 205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMA 264
               LN  GI+VTQAG   ++  T+     Y  +++VF  V  YS  +  +A  W +++ 
Sbjct: 180 YD-ALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVG 236

Query: 265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
                 +   ++D +  K ++    Y D     +   + K +R++L
Sbjct: 237 VKGD--IDFTKIDRERAKKLQL--EYYDPLMHETLFQMPKYIRETL 278

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score =  350 bits (900), Expect = e-121
 Identities = 90/316 (28%), Positives = 158/316 (50%), Gaps = 13/316 (4%)

Query: 7   SNGISQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLD 64
           +  +   NG   K  A        W+ E          S  +  +L  G++ YQD+ +  
Sbjct: 23  AATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQ 82

Query: 65  TKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK 124
           +  +GK LV+DG +Q  E DE  Y E + H  L   PNPK + ++GGG+G   RE+ RH 
Sbjct: 83  SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA 142

Query: 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183
           ++E++ MC+ID+ VV+  K +       + DPR+ LVI D  A L++  E SYD +I D 
Sbjct: 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS 202

Query: 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
           +DPI  GP  +L+ K F++ V +  L P G+  TQA    ++ H ++   I +  R++FK
Sbjct: 203 SDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFK 257

Query: 244 YVVPYS-AHIPSFAD-TWGWIMASDSPFTLSAEELDMKVKK---NIKGENRYLDGKTISS 298
             V Y+   +P++     G+++ S     +  +     + +      G  ++ + +  S+
Sbjct: 258 GSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPIDESSSKSNGPLKFYNAEIHSA 317

Query: 299 SSTLSKAVRKSLDNET 314
           +  L    +K ++++ 
Sbjct: 318 AFCLPSFAKKVIESKA 333

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score =  342 bits (879), Expect = e-118
 Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 13/294 (4%)

Query: 28  KSCWYEEEIEE--NLRWSFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
              W+ EE ++      S  +  +L+   T++Q + + ++ P   +G  + +DG +Q  +
Sbjct: 16  SGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTD 75

Query: 83  VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
            DEF+YHE L H +L  HP P+ + I+GGG+G   RE+LRH TVE   + DID EV+E  
Sbjct: 76  YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS 135

Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
           K +      + +DPR  + + D  A + ++   +YDV+I D  DP   GP  KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPA--GPASKLFGEAFY 193

Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFA-DTW 259
           + V++  L P+GI   Q     I+   E+   +   +R+  F  V     H+P++   + 
Sbjct: 194 KDVLR-ILKPDGICCNQGES--IWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSI 250

Query: 260 GWIMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE 313
           G ++ S        + L          + +Y D +   +S  L +  R   ++E
Sbjct: 251 GTLVCSKKAGVDVTKPLRPVEDMPFAKDLKYYDSEMHKASFALPRFARHINNSE 304

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score =  279 bits (715), Expect = 5e-94
 Identities = 46/286 (16%), Positives = 100/286 (34%), Gaps = 31/286 (10%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           W  +EI   LR  + + + L    + +  + +  +K FG+  +++ +L   +    I  E
Sbjct: 2   WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLF-KNFLHIESE 60

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            L H         K + I+ G +   A ++ ++     +     DE++++   S+     
Sbjct: 61  LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFF---- 114

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
             F + +       A+  L+   + YD+I       I       L             L 
Sbjct: 115 PHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDI--HRIDGLKR----------MLK 162

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSP-- 268
            +G+F++ A                  +  VF   +P+ A +   +   G+I AS     
Sbjct: 163 EDGVFISVAKH--PLLEHVSMQNALKNMGGVFSVAMPFVAPLRILS-NKGYIYASFKTHP 219

Query: 269 -FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE 313
              L   +++           RY +     ++  L K +++   + 
Sbjct: 220 LKDLMTPKIEALTS------VRYYNEDIHRAAFALPKNLQEVFKDN 259

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score =  161 bits (408), Expect = 3e-47
 Identities = 53/244 (21%), Positives = 85/244 (34%), Gaps = 26/244 (10%)

Query: 48  SILHTGETRYQDIALLD--TKPFGKALVIDGKLQSA------EVDEFIYHESLVHPALLH 99
            I  T E  Y  I L        G  + I+G   S       +  EF Y   +   A   
Sbjct: 22  PIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAF 81

Query: 100 -----HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS 154
                  +   I  +GGG  + AR         +  + ++D E+    + +     +   
Sbjct: 82  IDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWF----DIPR 137

Query: 155 DPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213
            PR+++ ++DAR   ES    S DVII D+             T  F+E      L P G
Sbjct: 138 APRVKIRVDDARMVAESFTPASRDVIIRDVFAG--AITPQNFTTVEFFE-HCHRGLAPGG 194

Query: 214 IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG--WIMASDSPFTL 271
           ++V   G     S           + +VF++V   +         +G   +M SD+ F  
Sbjct: 195 LYVANCGD---HSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFS 251

Query: 272 SAEE 275
           S   
Sbjct: 252 SNST 255

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFS 154
           A L   N + +  +G G+G+  + +L+    E++   D+    +E  +  L  +      
Sbjct: 23  AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82

Query: 155 DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214
             RL+L+        + R   YD     + + IE     +L     +E V+     P+ +
Sbjct: 83  WERLQLIQGAL-TYQDKRFHGYDAAT--VIEVIEHLDLSRLGA---FERVLFEFAQPKIV 136

Query: 215 FVT----------QAGPAGIFSH 227
            VT             PAG   H
Sbjct: 137 IVTTPNIEYNVKFANLPAGKLRH 159

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD 155
           A+L   N K +  +G GEG+    +L+ K+ E++   D+   V+E  K  L +++     
Sbjct: 23  AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82

Query: 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215
            +   +   +    + R   YD     + + IE     +L     +E V+     P+ + 
Sbjct: 83  RKRISLFQSSLVYRDKRFSGYDAAT--VIEVIEHLDENRLQA---FEKVLFEFTRPQTVI 137

Query: 216 VT 217
           V+
Sbjct: 138 VS 139

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
           T++ +GGG GS A E LR       V  +I EE  E   S    N           V   
Sbjct: 28  TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS----NAINLGVSDRIAVQQG 83

Query: 165 ARAELESRKESYDVIIGDLADPIEG 189
           A    +   ++ DVI         G
Sbjct: 84  APRAFDDVPDNPDVIFIGGGLTAPG 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 53/325 (16%), Positives = 98/325 (30%), Gaps = 112/325 (34%)

Query: 36  IEENL--RWSFALNSILHTGETRYQDIALLDTKPFGKALVI-----DGKL---------- 78
           I+ N   R   + N  L     + +   LL +KP+   L++     + K           
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 79  ----QSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134
               +  +V +F+   +  H +L HH               T  E+     + K + C  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHS-----------MTLTPDEVK--SLLLKYLDCRP 315

Query: 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYK 194
            +   E             ++P     ++               II +    I  G    
Sbjct: 316 QDLPREVLT----------TNP---RRLS---------------IIAES---IRDGLA-- 342

Query: 195 LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL-----RQVFKY--VVP 247
             T   ++ V   +L                  T +     N L     R++F    V P
Sbjct: 343 --TWDNWKHVNCDKL------------------TTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 248 YSAHIPS--FADTWGWIMASDSPFTLSAEELDMK--VKKNIKGENRYLDGKTISSSSTLS 303
            SAHIP+   +  W  ++ SD    +   +L     V+K  K     +          + 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPS--------IY 432

Query: 304 KAVRKSLDNETQVYTEGSARFIYGY 328
             ++  L+NE  ++       +  Y
Sbjct: 433 LELKVKLENEYALH----RSIVDHY 453

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 96  ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA--- 152
            LL+  NPK +       G            E+V + DI E+  E  K  +++N +    
Sbjct: 41  VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100

Query: 153 --------FSDPRLELVINDARAELESRKESYDVIIGDL 183
                     +  + +  +DA   +  R   +  I  D 
Sbjct: 101 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	100.0
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	100.0
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	100.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	100.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	100.0
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	100.0
2o07_A	304	Spermidine synthase; structural genomics, structur	100.0
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	100.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	100.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	100.0
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	100.0
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	100.0
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	100.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	100.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.54
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.54
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.51
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.51
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.48
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.47
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.47
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.46
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.46
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.43
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.43
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.42
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.42
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.41
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.41
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.4
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.38
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.38
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.38
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.38
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.37
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.36
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.36
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.36
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.35
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.35
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.35
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.35
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.34
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.32
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.32
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.31
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.3
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.29
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.29
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.29
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.29
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.28
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.28
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.28
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.27
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.27
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.27
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.26
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.26
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.25
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.24
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.24
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.23
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.23
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.23
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.22
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.21
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.21
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.21
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.21
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.2
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.2
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.19
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.19
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.18
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.18
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.17
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.17
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.17
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.16
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.16
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.16
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.16
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.16
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.15
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.15
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.14
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.14
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.14
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.14
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.13
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.13
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.13
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.13
3ocj_A	305	Putative exported protein; structural genomics, PS	99.12
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.12
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.12
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.12
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.12
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.12
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.12
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.12
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.11
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.11
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.11
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.1
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.1
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.09
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.09
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.08
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.08
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.08
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.08
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.07
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.07
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.06
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.06
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.05
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.05
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.04
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.04
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.04
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.03
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.03
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.03
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.03
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.03
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.03
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.02
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.02
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.02
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.02
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.02
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.02
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.02
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.02
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.02
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.02
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.01
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.01
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.01
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.01
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.01
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.0
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.0
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.0
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.0
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.99
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.99
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.99
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.99
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.99
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.99
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.99
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.98
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.98
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.98
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.98
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.98
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.98
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.97
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.97
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.97
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.97
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.96
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.96
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.96
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.95
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.95
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.94
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.94
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.93
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.93
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.92
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.92
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.92
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.91
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.9
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.88
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.88
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.87
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.87
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.87
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.86
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.86
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.85
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.85
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.85
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.85
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.84
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.84
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.84
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.83
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.82
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.8
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.8
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.8
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.79
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.79
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.78
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.78
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.78
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.78
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.78
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.76
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.76
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.74
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.73
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.73
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.73
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.7
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.7
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.69
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.68
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.68
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.67
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.64
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.63
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.61
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.61
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.6
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.59
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.59
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.59
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.57
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.57
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.56
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.55
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.53
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.53
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.52
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.52
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.51
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.5
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.5
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.47
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.47
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.47
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.47
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.46
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.45
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.43
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.43
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.42
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.41
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.4
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.38
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.34
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.34
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.32
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.31
3khk_A	544	Type I restriction-modification system methylation	98.31
3lkd_A	542	Type I restriction-modification system methyltrans	98.3
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.29
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.18
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.16
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.13
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.12
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.12
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.11
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.09
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.07
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.02
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.9
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.85
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.83
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.81
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.8
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.8
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.64
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.34
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.33
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.27
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.24
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.19
3ufb_A	530	Type I restriction-modification system methyltran	96.98
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.86
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.82
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.64
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.63
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.36
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.33
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.32
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.24
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.22
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.72
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.67
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.53
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.18
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.08
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.03
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.89
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.85
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.77
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.75
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.67
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.64
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.41
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.36
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.31
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.18
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.95
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.92
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.89
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.88
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.88
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.81
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.7
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.67
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.67
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.64
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.55
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.4
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.39
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.34
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.33
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.29
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.28
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.27
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.23
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.15
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.14
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.05
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.83
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.76
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.49
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.47
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.3
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.29
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.17
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	92.16
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.1
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.02
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.91
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.85
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.77
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.75
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	91.59
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.47
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	91.28
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.1
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	90.97
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.84
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.82
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.59
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.55
4eye_A	342	Probable oxidoreductase; structural genomics, niai	90.55
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.27
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.05
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.92
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	89.88
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	89.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	89.63
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	89.61
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	89.52
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	89.5
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	89.47
3gms_A	340	Putative NADPH:quinone reductase; structural genom	89.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.06
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	89.03
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.81
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	88.68
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	88.67
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.32
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.31
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.23
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.04
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	88.04
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.96
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.72
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.51
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.45
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	87.37
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	87.36
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.24
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	87.12
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.06
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.06
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	87.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.89
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	86.59
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	86.41
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	86.41
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.36
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	86.28
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	86.14
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	86.03
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	85.97
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.96
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.9
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.89
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	85.86
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	85.76
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	85.58
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	85.53
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	85.39
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.38
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.31
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	85.28
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	84.96
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	84.84
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	84.68
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	84.6
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	84.53
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	84.27
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	84.22
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	84.2
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.18
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	84.05
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	83.98
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	83.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.92
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	83.91
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	83.78
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	83.74
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.65
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	83.61
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	83.59
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	83.53
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.5
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	83.32
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	82.99
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	82.97
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	82.96
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	82.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	82.7
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	82.63
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	82.27
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.26
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.25
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.12
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.09
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	82.01
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	81.98
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	81.9
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	81.78
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.62
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	81.61
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.57
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	81.55
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	81.51
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	81.48
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.32
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	81.18
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	81.05
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	81.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	80.96
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	80.89
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	80.84
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.72
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	80.68
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	80.67
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	80.63
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.36
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	80.35
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	80.32
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	80.3
4g65_A	461	TRK system potassium uptake protein TRKA; structur	80.3
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	80.28
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	80.2
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.18
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	80.14
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	80.13
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.07
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	80.02

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=100.00  E-value=5.4e-68  Score=498.13  Aligned_cols=279  Identities=35%  Similarity=0.618  Sum_probs=255.1

Q ss_pred             ccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEE
Q 019699           28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF  107 (337)
Q Consensus        28 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VL  107 (337)
                      +..|++ .+.++.++.|+++++|++++|+||+|.|++++.+|++|+|||.+|++++||+.|||||+|+||+.|++|++||
T Consensus        10 ~~~w~e-~~~~~~~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VL   88 (294)
T 3o4f_A           10 KKQWHE-TLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVL   88 (294)
T ss_dssp             CEEEEC-CSSSSEEEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             ccceee-eccCCcceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEE
Confidence            457984 5667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       108 iIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      +||+|+|++++++++|+++++|++|||||+|+++||+||+. +.++++|||++++++||++||++..++||+||+|+++|
T Consensus        89 IiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp  168 (294)
T 3o4f_A           89 IIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDP  168 (294)
T ss_dssp             EESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCC
T ss_pred             EECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCc
Confidence            99999999999999999999999999999999999999974 55678899999999999999999889999999999999


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEEe
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMAS  265 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~as  265 (337)
                      .  +|+..|||++||+. ++++|+|||++++|+++|  +.+.+.+..+.++++++||.|.+|.+.+|+| ++.|+|++||
T Consensus       169 ~--~~~~~L~t~eFy~~-~~~~L~p~Gv~v~q~~sp--~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as  243 (294)
T 3o4f_A          169 I--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGVC--FLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWAT  243 (294)
T ss_dssp             C--CTTCCSSCCHHHHH-HHHTEEEEEEEEEEEEES--SSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEE
T ss_pred             C--CCchhhcCHHHHHH-HHHHhCCCCEEEEecCCc--ccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEE
Confidence            7  77789999999999 899999999999999988  6788889999999999999999999999999 5789999999


Q ss_pred             cCCC--CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCC
Q 019699          266 DSPF--TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE  313 (337)
Q Consensus       266 ~~p~--~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~  313 (337)
                      +++.  .++.+.+.+|+.++ ..++||||+++|++||+||+|+|++|..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~-~~~~~yyn~~~h~aaF~lP~~~~~~l~~e  292 (294)
T 3o4f_A          244 DNDALRHLSTEIIQARFLAS-GLKCRYYNPAIHTAAFALPQYLQDALASQ  292 (294)
T ss_dssp             SCTTGGGCCHHHHHHHHHSS-CCCCSSCCHHHHHHHTCCCHHHHHHTTSS
T ss_pred             CCCccccCChHHHhHHHHhh-CCCceEECHHHHHHHccCcHHHHHHHhcC
Confidence            8753  46677788887764 45899999999999999999999999754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=100.00  E-value=3.3e-56  Score=424.15  Aligned_cols=303  Identities=40%  Similarity=0.679  Sum_probs=270.9

Q ss_pred             cccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        27 ~~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      .++.||+|..+++.+++++++++|++++|+||+|.|++++.+|++|++||..|+++.+++.|||+|+|++++.|+++++|
T Consensus         2 ~~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   81 (314)
T 1uir_A            2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (314)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCCceEEEEcCCCcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      |+||||+|.++++++++++..+|++||+|+.+++.|+++++. +.+.++++|++++.+|+++++....++||+|++|+++
T Consensus        82 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  161 (314)
T 1uir_A           82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (314)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCC
Confidence            999999999999999987788999999999999999999864 2222457899999999999998777899999999988


Q ss_pred             CC-CCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC-CChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEE
Q 019699          186 PI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF-SHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIM  263 (337)
Q Consensus       186 p~-~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~-~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~  263 (337)
                      +. ..+|...|++.+||+. ++++|+|||+++++.+++  + .+.+.++.+.++++++|+++..|.+.+|+|++.|+|++
T Consensus       162 ~~~~~~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~  238 (314)
T 1uir_A          162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMI--LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLL  238 (314)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEE--CC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEE
T ss_pred             cccccCcchhccHHHHHHH-HHHhcCCCcEEEEEccCc--cccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEE
Confidence            75 2245568889999999 899999999999998765  3 45678899999999999999999999999987899999


Q ss_pred             EecC--CCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCcccccCCcccccccccccc
Q 019699          264 ASDS--PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALK  333 (337)
Q Consensus       264 as~~--p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~~~~~~~~~~~~~~~  333 (337)
                      |||.  |..++++.+.+|+..+. .++||||+++|+++|+||+++++.|+.+.+++|+++|+++++.|.++.
T Consensus       239 as~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~lp~~~~~~~~~~~~~~t~~~p~~~~~~~~~~~  309 (314)
T 1uir_A          239 ASDAFDPAAFSEGVIEARIRERN-LALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEARQ  309 (314)
T ss_dssp             EESSSCTTCCCTTHHHHHHHHTT-CCCSSCCHHHHHHTTCCCHHHHHHHHHCCCCCCSSSCEEECTTSCEEE
T ss_pred             EECCCCcccCCHHHHHHHhhccc-cCccccCHHHHHHHcCCCHHHHHHhhCCCCccccCCceEEecCCcccc
Confidence            9998  44556677888887653 389999999999999999999999999999999999999999998874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=100.00  E-value=5.2e-54  Score=401.84  Aligned_cols=272  Identities=31%  Similarity=0.641  Sum_probs=244.1

Q ss_pred             cceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEE
Q 019699           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (337)
Q Consensus        29 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLi  108 (337)
                      .+||+|..+++.+++++++++|++++|+||+|.|++++.+|+.|++||..|++++|++.|||+|+|++++.|+++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLd   81 (275)
T 1iy9_A            2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (275)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CccEEEecCCCcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             EecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCC
Q 019699          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (337)
Q Consensus       109 IG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~  188 (337)
                      ||||+|.++++++++++..+|++||||++++++|+++++.....++++|++++.+|++++++...++||+|++|+++|. 
T Consensus        82 iG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~-  160 (275)
T 1iy9_A           82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (275)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             ECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCC-
Confidence            9999999999999987788999999999999999999864333456899999999999999877789999999999876 


Q ss_pred             CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEEecC
Q 019699          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDS  267 (337)
Q Consensus       189 ~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~as~~  267 (337)
                       +++..|++.+||+. ++++|+|||+++++.++|  +.+.+.++.+.++++++|+++..|.+.+|+| ++.|+|++|||+
T Consensus       161 -~~~~~l~~~~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~  236 (275)
T 1iy9_A          161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK  236 (275)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             -CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--cccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCC
Confidence             56678999999999 899999999999998776  5678889999999999999999999999999 578999999997


Q ss_pred             CCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhh
Q 019699          268 PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL  310 (337)
Q Consensus       268 p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l  310 (337)
                      ..+.+.+   ++ +. ...++||||+++|+++|+||+|++++|
T Consensus       237 ~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~f~lp~~~~~~~  274 (275)
T 1iy9_A          237 YDPLAVE---DS-RF-FDIETKYYTKDIHKAAFVLPKFVSDLI  274 (275)
T ss_dssp             CCTTCCC---GG-GC-CCCCCSSCCHHHHHHTTCCCHHHHTTC
T ss_pred             CCccccc---hh-hc-cccCCeEeCHHHHHHHcCCCHHHHHhh
Confidence            6543211   12 11 235789999999999999999999986

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=100.00  E-value=1.5e-51  Score=386.62  Aligned_cols=272  Identities=29%  Similarity=0.534  Sum_probs=241.3

Q ss_pred             cceEEee--eccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           29 SCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        29 ~~w~~e~--~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      +.||+|.  ++++.+++++++++|++++|+||+|.|++++.+|++|++||.+|+++++++.||++|+|++++.++++++|
T Consensus         3 ~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V   82 (283)
T 2i7c_A            3 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNV   82 (283)
T ss_dssp             CCEEEECCTTSTTCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEE
T ss_pred             ceeEEEcccCCCCceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeE
Confidence            5799999  66999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      |+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....++++|++++.+|+.+++....++||+|++|++++
T Consensus        83 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~  162 (283)
T 2i7c_A           83 LVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDP  162 (283)
T ss_dssp             EEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCT
T ss_pred             EEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCC
Confidence            99999999999999998778899999999999999999987543335579999999999999987678899999999988


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEe
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMAS  265 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as  265 (337)
                      .  ++...+++.+||+. ++++|+|||+++++.+++  +.+.+.+..+.++++++|+++..|.+.+|+|+ +.|+|++||
T Consensus       163 ~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s  237 (283)
T 2i7c_A          163 I--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCS  237 (283)
T ss_dssp             T--TGGGGGSSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred             C--CcchhhhHHHHHHH-HHHhcCCCcEEEEECCCc--ccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEe
Confidence            7  66678999999999 899999999999998776  66778889999999999999999999999995 567999999


Q ss_pred             cCC----CCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          266 DSP----FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       266 ~~p----~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      +++    .++. +...+    + ...+||||+++|+++|+||+|+++.|+
T Consensus       238 ~~~~~~~~~~~-~~~~~----~-~~~~~~~~~~~~~~~f~~p~~~~~~~~  281 (283)
T 2i7c_A          238 KTDTGLTKPNK-KLESK----E-FADLKYYNYENHSAAFKLPAFLLKEIE  281 (283)
T ss_dssp             SSTTCSSSCSS-CCCSG----G-GTTCSSCCHHHHHHTTCCCHHHHHHHT
T ss_pred             CCCccccCchh-hhhhh----h-hhcCceECHHHHHHHhcCcHHHHHHhh
Confidence            873    2321 11111    1 235699999999999999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=100.00  E-value=4.2e-51  Score=383.06  Aligned_cols=270  Identities=31%  Similarity=0.572  Sum_probs=236.1

Q ss_pred             cceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEE
Q 019699           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (337)
Q Consensus        29 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLi  108 (337)
                      ++||+|..+++.+.+++++++|++++|+||+|.|++++.+|+.|++||..|+++++++.|||+|+|++++.++++++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLd   81 (281)
T 1mjf_A            2 ERAFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLV   81 (281)
T ss_dssp             --CEEEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEE
T ss_pred             CccEEEecCCCceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCC-------CCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-------SDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       109 IG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-------~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ||||+|.++++++++ +..+|++||+|+.+++.|++++ .....+       .++|++++.+|+++++.. .++||+|++
T Consensus        82 iG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~  158 (281)
T 1mjf_A           82 IGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIA  158 (281)
T ss_dssp             EECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEE
T ss_pred             EcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEE
Confidence            999999999999998 7789999999999999999998 322223       478999999999999987 788999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGW  261 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~  261 (337)
                      |+++|.  ++...+++.+||+. ++++|+|||+++++.++|  +.+.+.++.+.++++++|+++..|...+|+|++.|+|
T Consensus       159 d~~~~~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~  233 (281)
T 1mjf_A          159 DSTDPV--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAF  233 (281)
T ss_dssp             ECCCCC-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEE
T ss_pred             CCCCCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEE
Confidence            999876  55678889999999 899999999999998766  5677889999999999999999999999999888999


Q ss_pred             EEEecCC-CCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          262 IMASDSP-FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       262 ~~as~~p-~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ++||+.+ .+.+.  ..+|+..   .++||||+++|+++|+||+|++++|+
T Consensus       234 ~~as~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~f~~p~~~~~~~~  279 (281)
T 1mjf_A          234 LVGVKGDIDFTKI--DRERAKK---LQLEYYDPLMHETLFQMPKYIRETLQ  279 (281)
T ss_dssp             EEEEESSCCTTCC--CHHHHHT---SCCSSCCGGGGGGGGCCCHHHHHHHC
T ss_pred             EEeeCCCCCcccc--chhhhhc---cCCcEECHHHHHHHhcCcHHHHHHHh
Confidence            9999973 33321  1234442   47899999999999999999999985

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=100.00  E-value=1e-50  Score=383.35  Aligned_cols=279  Identities=31%  Similarity=0.582  Sum_probs=240.0

Q ss_pred             cccceEEeeec-cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCe
Q 019699           27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (337)
Q Consensus        27 ~~~~w~~e~~~-~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~  105 (337)
                      ..+.||+|..+ ++.+++++++++|++++|+||+|.|++++.+|+.|++||.+|+++++++.|||+|+|++++.++++++
T Consensus        14 ~~~~w~~e~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~   93 (296)
T 1inl_A           14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK   93 (296)
T ss_dssp             CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCceEEEecCCCCceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCE
Confidence            66789999998 89999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      ||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....++++|++++.+|+++++....++||+|++|+++
T Consensus        94 VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~  173 (296)
T 1inl_A           94 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD  173 (296)
T ss_dssp             EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred             EEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCC
Confidence            99999999999999999877789999999999999999998642223457899999999999997767889999999988


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMA  264 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~a  264 (337)
                      |+. ++...+++.+||+. ++++|+|||+++++.++|  +.+.+.++.+.++++++|+++..|.+.+|+| ++.|+|++|
T Consensus       174 ~~~-~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~a  249 (296)
T 1inl_A          174 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA  249 (296)
T ss_dssp             ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred             ccc-CchhhhhHHHHHHH-HHHhcCCCcEEEEEccCc--ccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEe
Confidence            732 56678899999999 899999999999998776  5677889999999999999999999999999 578999999


Q ss_pred             ecCCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       265 s~~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ||+..+.. +...+|+.++ ..++||||+++|+++|+||+|++++|+
T Consensus       250 s~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~  294 (296)
T 1inl_A          250 SKGIDPIK-DFDPEKVRKF-NKELKYYNEEVHVASFALPNFVKKELG  294 (296)
T ss_dssp             ESSCCTTT-TCCHHHHHTC-SSCCSSCCHHHHHHTTCCCHHHHHHTT
T ss_pred             cCCCChhh-hhhhhhHhhc-cCCceecCHHHHHHHcCCcHHHHHHHh
Confidence            99765531 1114555543 347899999999999999999999885

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=100.00  E-value=1.7e-50  Score=383.24  Aligned_cols=280  Identities=29%  Similarity=0.587  Sum_probs=234.2

Q ss_pred             CCccccceEEeeec--cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCC
Q 019699           24 TGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHP  101 (337)
Q Consensus        24 ~~~~~~~w~~e~~~--~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~  101 (337)
                      ++..++.||+|..+  ++.+++++++++|++++|+||+|.|++++.+|++|++||.+|+++++++.|+++++|++++.++
T Consensus        15 ~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~~~   94 (304)
T 2o07_A           15 PAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHP   94 (304)
T ss_dssp             ---CBTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSS
T ss_pred             CcccccceEEEeccCCCCceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhhCC
Confidence            45567889999865  8999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++++||+||||+|.++++++++.+..+|++||+|+++++.|+++++.....++++|++++.+|+++++....++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            99999999999999999999987778999999999999999999875222345789999999999999877788999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWG  260 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~  260 (337)
                      |++++.  +|...+++.+||+. ++++|+|||+++++.+++  |.+.+..+.+.++++++|+++..+...+|+|+ +.|+
T Consensus       175 d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g  249 (304)
T 2o07_A          175 DSSDPM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIG  249 (304)
T ss_dssp             ECC-------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEE
T ss_pred             CCCCCC--CcchhhhHHHHHHH-HHhccCCCeEEEEecCCc--ccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceE
Confidence            999876  55567889999999 899999999999998666  66777888999999999999999989999994 6799


Q ss_pred             EEEEecCCC-----CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699          261 WIMASDSPF-----TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN  312 (337)
Q Consensus       261 ~~~as~~p~-----~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~  312 (337)
                      |++||+.+.     ++. +...+++..   .++||||+++|+++|+||+|+++.|++
T Consensus       250 ~~~as~~~~~~~~~~~~-~~~~~~~~~---~~~~~y~~~~h~~~f~lp~~~~~~~~~  302 (304)
T 2o07_A          250 FMLCSKNPSTNFQEPVQ-PLTQQQVAQ---MQLKYYNSDVHRAAFVLPEFARKALND  302 (304)
T ss_dssp             EEEEESSTTCCSSSCSS-CCCHHHHHH---TTCSSCCHHHHHHTTCCCHHHHHHHHC
T ss_pred             EEEEeCCcccccccchh-hhhHhhhcc---cCCeEECHHHHHHHhcCcHHHHHHhhc
Confidence            999998742     110 111223221   478999999999999999999999864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=100.00  E-value=9.1e-51  Score=386.76  Aligned_cols=267  Identities=30%  Similarity=0.595  Sum_probs=225.2

Q ss_pred             eccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhH
Q 019699           36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS  115 (337)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~  115 (337)
                      ++++.+++++++++|++++|+||+|.|++++.+|+.|++||.+|+++++++.|||+|+|++++.++++++||+||||+|.
T Consensus        42 ~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~  121 (314)
T 2b2c_A           42 AWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGG  121 (314)
T ss_dssp             CCTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSH
T ss_pred             cCCCceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCH
Confidence            56888899999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCC
Q 019699          116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL  195 (337)
Q Consensus       116 ~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L  195 (337)
                      ++++++++.+..+|++||+|+.+++.|+++++.....++++|++++.+|+++++....++||+|++|+++|.  +|...+
T Consensus       122 ~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--~~~~~l  199 (314)
T 2b2c_A          122 ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESL  199 (314)
T ss_dssp             HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------
T ss_pred             HHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--Ccchhh
Confidence            999999987788999999999999999999864322345789999999999999876788999999999876  566688


Q ss_pred             chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEecCCC-----
Q 019699          196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASDSPF-----  269 (337)
Q Consensus       196 ~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as~~p~-----  269 (337)
                      ++.+||+. ++++|+|||+++++.+++  +.+.+.++.+.++++++|+++..|.+.+|+|+ +.|+|++||+.+.     
T Consensus       200 ~t~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~~~~~~~  276 (314)
T 2b2c_A          200 FGQSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTT  276 (314)
T ss_dssp             ----HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCTTS
T ss_pred             hHHHHHHH-HHhhcCCCeEEEEECCCc--ccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCCcccccC
Confidence            99999999 899999999999998776  66778889999999999999999999999995 5679999998742     


Q ss_pred             CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       270 ~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ++. +...+|+...   ++||||+++|+++|+||+|++++|+
T Consensus       277 ~~~-~~~~~~~~~~---~~~yy~~~~h~~~f~lp~~~~~~l~  314 (314)
T 2b2c_A          277 PAR-TLTAEQIKAL---NLRFYNSEVHKAAFVLPQFVKNALE  314 (314)
T ss_dssp             CSS-CCCHHHHHHT---TCSSCCHHHHHHTTCCCHHHHHTCC
T ss_pred             chh-hhhHHhhccc---CCeEECHHHHHHHccCcHHHHHhhC
Confidence            221 2224454432   7899999999999999999999873

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=100.00  E-value=1.7e-50  Score=385.92  Aligned_cols=278  Identities=29%  Similarity=0.534  Sum_probs=244.1

Q ss_pred             cccceEEeeec--cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCC
Q 019699           27 RKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK  104 (337)
Q Consensus        27 ~~~~w~~e~~~--~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~  104 (337)
                      .++.||+|..+  ++.+++++++++|++++|+||+|.|++++.+|+.|.+||..|+++++++.|+|+|+|++++.+++++
T Consensus        39 ~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~  118 (321)
T 2pt6_A           39 FSKKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK  118 (321)
T ss_dssp             --CCEEEECCTTSTTCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCC
T ss_pred             ccceEEEEeccCCCCceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCC
Confidence            46789999988  8999999999999999999999999999989999999999999999999999999999999899999


Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~  184 (337)
                      +||+||||+|.++++++++.+..+|++||+|+++++.|+++++.....++++|++++.+|+.+++....++||+|++|++
T Consensus       119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~  198 (321)
T 2pt6_A          119 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS  198 (321)
T ss_dssp             EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC
T ss_pred             EEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCc
Confidence            99999999999999999987788999999999999999999875323345789999999999998776788999999998


Q ss_pred             CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEE
Q 019699          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIM  263 (337)
Q Consensus       185 dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~  263 (337)
                      +|.  +|...+++.+||+. ++++|+|||+++++.+++  +.+.+.++.+.++++++|+++.+|.+.+|+|+ +.|+|++
T Consensus       199 ~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~  273 (321)
T 2pt6_A          199 DPI--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC  273 (321)
T ss_dssp             CSS--SGGGGGSSHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred             CCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence            876  56678889999999 899999999999998766  56778899999999999999999999999995 5799999


Q ss_pred             EecCCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          264 ASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       264 as~~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ||+++.|.+.  ..+|+.++...++||||+++|+++|+||+|++++|+
T Consensus       274 as~~~~p~~~--~~~~~~~~~~~~~~~y~~~~h~~~f~lp~~~~~~~~  319 (321)
T 2pt6_A          274 CSKTDTGLTK--PNKKLESKEFADLKYYNYENHSAAFKLPAFLLKEIE  319 (321)
T ss_dssp             EESSTTCSSS--CSSCCCSGGGTTCSSCCHHHHHHTTCCCHHHHHHTS
T ss_pred             eeCCCCccch--hHHHHHhccCCCCeEECHHHHHHHhCCcHHHHHHHh
Confidence            9998765421  123332221147899999999999999999999985

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=100.00  E-value=2e-50  Score=375.19  Aligned_cols=257  Identities=17%  Similarity=0.252  Sum_probs=227.9

Q ss_pred             ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEE
Q 019699           30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM  109 (337)
Q Consensus        30 ~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiI  109 (337)
                      +||+|..+++.+++++++++|++++|+||+|.|++++.+|++|++||. |+++.+++.|||+|+|++++.++++++||+|
T Consensus         1 ~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~i   79 (262)
T 2cmg_A            1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIV   79 (262)
T ss_dssp             CEEEEEEETTEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEE
T ss_pred             CcEEEEcCCCceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEE
Confidence            599999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             ecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC
Q 019699          110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG  189 (337)
Q Consensus       110 G~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~  189 (337)
                      |||+|.++++++++ + .+|++||+|+++++.|+++++.....++++|++++.+|+++++    ++||+|++|+++|.  
T Consensus        80 G~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~dp~--  151 (262)
T 2cmg_A           80 DGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEPDI--  151 (262)
T ss_dssp             SSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSCCCH--
T ss_pred             eCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCCChH--
Confidence            99999999999999 7 8999999999999999999864222346799999999999987    67999999976542  


Q ss_pred             CCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCC
Q 019699          190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPF  269 (337)
Q Consensus       190 ~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~  269 (337)
                               .||+. ++++|+|||+++++.++|  +.+.+.++.+.++++++|+++.+|...+|+ ++.|+|++||++++
T Consensus       152 ---------~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~-~g~~~~~~as~~~~  218 (262)
T 2cmg_A          152 ---------HRIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGGVFSVAMPFVAPLRI-LSNKGYIYASFKTH  218 (262)
T ss_dssp             ---------HHHHH-HHTTEEEEEEEEEEEECT--TTCHHHHHHHHHHHHTTCSEEEEECCTTCT-TCCEEEEEEESSCC
T ss_pred             ---------HHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHhCCceEEEEEccCC-CcccEEEEeeCCCC
Confidence                     38998 899999999999998776  456678889999999999999999999999 88899999999866


Q ss_pred             CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       270 ~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      |.. +...++++++  .++||||+++|+++|+||+|++++|+
T Consensus       219 p~~-~~~~~~~~~~--~~~~~y~~~~h~~~f~lp~~~~~~l~  257 (262)
T 2cmg_A          219 PLK-DLMTPKIEAL--TSVRYYNEDIHRAAFALPKNLQEVFK  257 (262)
T ss_dssp             TTT-TCCHHHHTTC--CSCSSCCHHHHHHTTCCCHHHHHHGG
T ss_pred             chh-hcCHhHhhcc--CCCcEECHHHHHHHcCCCHHHHHHHH
Confidence            541 1112344443  57899999999999999999999986

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=100.00  E-value=4.2e-49  Score=373.45  Aligned_cols=277  Identities=30%  Similarity=0.546  Sum_probs=235.4

Q ss_pred             ccccceEEeeec--cchhcccccccEEEEeecCCCeEEEEEeC---CCceEEEEcCccccccCChhhHHHHHHhHHHhcC
Q 019699           26 YRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTK---PFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH  100 (337)
Q Consensus        26 ~~~~~w~~e~~~--~~~~~~~~~~~~l~~~~s~~q~I~V~~~~---~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~  100 (337)
                      ...+.||+|..+  ++.+.+++++++|++++|+||+|.|+++.   .+|++|++||.+|+++.+++.|+++++|++++.+
T Consensus        14 ~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~   93 (304)
T 3bwc_A           14 LISGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSH   93 (304)
T ss_dssp             CCTTSEEEECCSSSCSEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHHTTS
T ss_pred             cccCceEEEeccCCCCceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhhhcC
Confidence            345789999987  89999999999999999999999999999   7899999999999999999999999999999988


Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      +++++||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.++|++++.+|+.+++.. ..++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            99999999999999999999998778899999999999999999986322224579999999999999875 46789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeecccc-CC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSF-AD  257 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~-~~  257 (337)
                      ++|.+++.  +|...|++.+||+. ++++|+|||+++++.+++  +.+....+.+.++++++ |+.+..|...+|+| ++
T Consensus       174 i~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g  248 (304)
T 3bwc_A          174 IIDTTDPA--GPASKLFGEAFYKD-VLRILKPDGICCNQGESI--WLDLELIEKMSRFIRETGFASVQYALMHVPTYPCG  248 (304)
T ss_dssp             EEECC-----------CCHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTS
T ss_pred             EECCCCcc--ccchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhCCCCcEEEEEeecccccCc
Confidence            99999876  56678999999999 899999999999998766  56677888999999999 99999999999999 57


Q ss_pred             ceEEEEEecCCCC--CCHHH-H-HHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          258 TWGWIMASDSPFT--LSAEE-L-DMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       258 ~~~~~~as~~p~~--~~~~~-l-~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      .|+|++||+++.+  .++.. + .+|+.    .++||||+++|+++|+||+|++++|+
T Consensus       249 ~w~f~~as~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~f~~p~~~~~~~~  302 (304)
T 3bwc_A          249 SIGTLVCSKKAGVDVTKPLRPVEDMPFA----KDLKYYDSEMHKASFALPRFARHINN  302 (304)
T ss_dssp             CCEEEEEESSSSCCTTSCSSCGGGSGGG----GGCSSCCHHHHHHHTCCCGGGGGGTC
T ss_pred             ceEEEEEeCCccccccChhhhhhhhhhc----cCCeEECHHHHHHHcCCCHHHHHHhc
Confidence            8999999997431  11111 1 23322    37899999999999999999999986

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=100.00  E-value=2.9e-49  Score=381.42  Aligned_cols=243  Identities=21%  Similarity=0.348  Sum_probs=206.9

Q ss_pred             cccCCccccceEEee--eccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHh
Q 019699           21 VALTGYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL   98 (337)
Q Consensus        21 ~~~~~~~~~~w~~e~--~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~   98 (337)
                      =.+++..+++|+...  .+++....|+++++||+++|+||+|.|++++.||++|+|||.+|++++| +.|||+|+|++++
T Consensus       124 ~~~~~~~rg~~~~~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~  202 (381)
T 3c6k_A          124 KRLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKE  202 (381)
T ss_dssp             ECCCCEEESCSSCCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTCC
T ss_pred             cccCccccCCccCceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHhh
Confidence            346677777777655  3568999999999999999999999999999999999999999999999 6899999999887


Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCC---CCCeEEEEccHHHHHhh---
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFS---DPRLELVINDARAELES---  171 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~---d~rv~v~~~D~~~~l~~---  171 (337)
                      .+ +|++||+||+|+|++++++++|++ ++|++|||||+|+++|++||+. ....++   ++|++++++||++||++   
T Consensus       203 ~~-~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          203 DY-TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CC-TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             cC-CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            65 589999999999999999999975 8999999999999999999974 333444   45799999999999975   


Q ss_pred             cCCceeEEEEeCCCCCC-C---CCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          172 RKESYDVIIGDLADPIE-G---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~-~---~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      ..++||+||+|++++.. .   +++..||+++||+. ++++|+|||++++|+++|  +. .+.++.+.++++++|+.+..
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~-~~~~L~p~GVlv~Q~~s~--~~-~~~~~~i~~tl~~vF~~v~~  356 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL-SMKVLKQDGKYFTQGNCV--NL-TEALSLYEEQLGRLYCPVEF  356 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHH-HHHTEEEEEEEEEEEEET--TC-HHHHHHHHHHHTTSSSCEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHH-HHHhcCCCCEEEEecCCC--cc-hhHHHHHHHHHHHhCCcceE
Confidence            35789999999986432 1   34567999999999 899999999999999877  43 46778899999999998854


Q ss_pred             --EEeeccccCCceEEEEEecCCCC
Q 019699          248 --YSAHIPSFADTWGWIMASDSPFT  270 (337)
Q Consensus       248 --~~~~vP~~~~~~~~~~as~~p~~  270 (337)
                        |.+.||+|++.|+|++|||+.+|
T Consensus       357 ~~~~~~VPSy~~~W~F~~aSK~~~P  381 (381)
T 3c6k_A          357 SKEIVCVPSYLELWVFYTVWKKAKP  381 (381)
T ss_dssp             EEEEECCGGGSSCEEEEEEEECCC-
T ss_pred             eeEEEEecCCCCceeeeEEECCCCC
Confidence              45789999889999999998754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=100.00  E-value=3.4e-48  Score=371.96  Aligned_cols=278  Identities=31%  Similarity=0.584  Sum_probs=237.5

Q ss_pred             cccceEEeee--ccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCC
Q 019699           27 RKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK  104 (337)
Q Consensus        27 ~~~~w~~e~~--~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~  104 (337)
                      .++.||+|..  +++.+++++++++|++++|+||+|.|+++..+|+.|++||.+|+++++++.|+|+|+|++++.+++++
T Consensus        43 ~~~~w~~e~~~~~~~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~  122 (334)
T 1xj5_A           43 VIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPK  122 (334)
T ss_dssp             CCSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCC
T ss_pred             cccceEEEeccCCCCceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCC
Confidence            4578999985  57899999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL  183 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~  183 (337)
                      +||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....++++|++++.+|+.+++... .++||+|++|+
T Consensus       123 ~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~  202 (334)
T 1xj5_A          123 KVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS  202 (334)
T ss_dssp             EEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECC
T ss_pred             EEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECC
Confidence            99999999999999999987788999999999999999999864222345789999999999998764 47899999999


Q ss_pred             CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCc-eeEEEeeccccC-CceEE
Q 019699          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY-VVPYSAHIPSFA-DTWGW  261 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~-v~~~~~~vP~~~-~~~~~  261 (337)
                      ++|.  ++...+++.+||+. ++++|+|||+++++.+++  |.+...+..+.++++++|+. +..+.+.+|+|+ +.|+|
T Consensus       203 ~~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf  277 (334)
T 1xj5_A          203 SDPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGF  277 (334)
T ss_dssp             CCTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEE
T ss_pred             CCcc--CcchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--cccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEE
Confidence            8876  45557888999999 899999999999998766  67777788889999999995 555568899994 67999


Q ss_pred             EEEecCC------CCCCHHHH-HHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCC
Q 019699          262 IMASDSP------FTLSAEEL-DMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE  313 (337)
Q Consensus       262 ~~as~~p------~~~~~~~l-~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~  313 (337)
                      ++||+..      +++.  .+ .++..  ...++||||+++|+++|+||+|+++.|+++
T Consensus       278 ~~as~~~~~~~~~~~~~--~~~~~~~~--~~~~~~yy~~~~h~~~f~lp~~~~~~l~~~  332 (334)
T 1xj5_A          278 MLCSTEGPDVDFKHPLN--PIDESSSK--SNGPLKFYNAEIHSAAFCLPSFAKKVIESK  332 (334)
T ss_dssp             EEEECSSSCCCSSSCSS--CCCSGGGT--TTCCCSSCCHHHHHHTTCCCHHHHHHHC--
T ss_pred             EEcccCCccccccCchh--hhhhhhhc--ccCCceEECHHHHHHHhcCcHHHHHHHhcc
Confidence            9999862      2221  11 11212  245899999999999999999999999753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=6.2e-38  Score=297.74  Aligned_cols=250  Identities=22%  Similarity=0.257  Sum_probs=208.7

Q ss_pred             cCCCeEEEEEeCC--CceEEEEcCcccccc------CChhhHHHHHHhHHHh---cCCCCC--eEEEEecchhHHHHHHH
Q 019699           55 TRYQDIALLDTKP--FGKALVIDGKLQSAE------VDEFIYHESLVHPALL---HHPNPK--TIFIMGGGEGSTAREIL  121 (337)
Q Consensus        55 s~~q~I~V~~~~~--~G~~L~lDG~~q~~~------~de~~Y~e~l~~~~l~---~~~~p~--~VLiIG~G~G~~~~~ll  121 (337)
                      ..|...+|...+.  +|++|++||..|+++      .+++.|||+|+|++++   .|++++  +||+||||+|.++++++
T Consensus        29 ~~~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la  108 (317)
T 3gjy_A           29 GEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFA  108 (317)
T ss_dssp             CSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHH
T ss_pred             ceeeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHH
Confidence            3455578877764  799999999999985      5799999999999987   578876  99999999999999999


Q ss_pred             hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHH
Q 019699          122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSF  200 (337)
Q Consensus       122 ~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef  200 (337)
                      ++.+..+|++||||++|+++||++|+..    .++|++++++|+++|++.. .++||+||+|++++.  +++.+|++.+|
T Consensus       109 ~~~p~~~v~~VEidp~vi~~Ar~~~~~~----~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~--~~~~~L~t~ef  182 (317)
T 3gjy_A          109 DVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA--ITPQNFTTVEF  182 (317)
T ss_dssp             HHSTTCEEEEEESCHHHHHHHHHHSCCC----CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS--CCCGGGSBHHH
T ss_pred             HHCCCcEEEEEECCHHHHHHHHHhcccc----CCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc--ccchhhhHHHH
Confidence            9555669999999999999999999754    4789999999999999764 578999999999876  45578999999


Q ss_pred             HHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCc--eEEEEEecCCCCC----CHH
Q 019699          201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT--WGWIMASDSPFTL----SAE  274 (337)
Q Consensus       201 ~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~--~~~~~as~~p~~~----~~~  274 (337)
                      |+. ++++|+|||++++|..++   ...+.++.++++|+++|+++..|..+.|.++..  |.+++||+.|.+.    +.+
T Consensus       183 l~~-~~r~LkpgGvlv~~~~~~---~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~~~~~~~~  258 (317)
T 3gjy_A          183 FEH-CHRGLAPGGLYVANCGDH---SDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFSSNSTEAS  258 (317)
T ss_dssp             HHH-HHHHEEEEEEEEEEEEEC---TTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSCCCCTTSHHHH
T ss_pred             HHH-HHHhcCCCcEEEEEecCC---cchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCCCCcccccchH
Confidence            999 899999999999998643   234678899999999999999998777777644  5569999999876    557


Q ss_pred             HHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCcccccCCccccc
Q 019699          275 ELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIY  326 (337)
Q Consensus       275 ~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~~~~~~~~  326 (337)
                      .+.+|+.+. ..+.+|++++.++.           +..+.++.||+++-+-+
T Consensus       259 ~l~r~~~~~-~~p~~~~~~~~l~~-----------~~~~a~~~~d~~~~~~~  298 (317)
T 3gjy_A          259 AITRELLGG-GVPAQYKDESWVRK-----------FASGAQARHDGVSTLQM  298 (317)
T ss_dssp             HHHHHHTSS-SSCCEEECHHHHHH-----------HTTTCCCBCCCCCCCCC
T ss_pred             HHHHHHcCC-CCCeEEECHHHHHH-----------HhCCCCCccCchhhhcC
Confidence            888888765 56899999877544           34677888988885533

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.54  E-value=9e-14  Score=127.06  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=107.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc------C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~------~  173 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....  + +++++++.+|+.+++...      .
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--V-DHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--C-GGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCCeEEEECCHHHHHHHHHhccCCC
Confidence            5678999999999999999998743 6799999999999999999986532  1 468999999999887643      5


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC----CCCCcC-C-Ch-----hHHHHHHHHHhhhc
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----GPAGIF-S-HT-----EVFSCIYNTLRQVF  242 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~----~~p~~~-~-~~-----~~~~~i~~~l~~vF  242 (337)
                      ++||+|++|....         ....+++. +.+.|+|||++++..    +..... . ..     ...+.+.+..+.++
T Consensus       155 ~~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~  224 (247)
T 1sui_A          155 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALA  224 (247)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCchH---------HHHHHHHH-HHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHh
Confidence            7899999996421         13578888 789999999998753    111000 0 11     12334444555556


Q ss_pred             CceeEEEeeccccCCceEEEEEecC
Q 019699          243 KYVVPYSAHIPSFADTWGWIMASDS  267 (337)
Q Consensus       243 ~~v~~~~~~vP~~~~~~~~~~as~~  267 (337)
                      .+.......+|.+.   |+.++.|.
T Consensus       225 ~~~~~~~~~lp~~d---G~~l~~k~  246 (247)
T 1sui_A          225 VDPRIEICMLPVGD---GITICRRI  246 (247)
T ss_dssp             TCTTBCCEEECSTT---CEEEECBC
T ss_pred             hCCCeEEEEEecCC---ccEEEEEc
Confidence            55555556678754   36777653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.54  E-value=6e-14  Score=127.20  Aligned_cols=152  Identities=15%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc------
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------  172 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~------  172 (337)
                      ..++++||+||+|+|..+..+++..+ ..+|+++|+|+.+++.|++++....  + +++++++.+|+.+++...      
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~-~~~i~~~~gda~~~l~~l~~~~~~  144 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--V-EHKINFIESDAMLALDNLLQGQES  144 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--C-GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhccCC
Confidence            35778999999999999999998743 6899999999999999999986532  2 468999999999987653      


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC----CCCcC--CChh----HHHHHHHHHhhhc
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG----PAGIF--SHTE----VFSCIYNTLRQVF  242 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~----~p~~~--~~~~----~~~~i~~~l~~vF  242 (337)
                      .++||+|++|...+         ...++++. +.+.|+|||++++...    .+...  ....    ..+.+.+.++.++
T Consensus       145 ~~~fD~I~~d~~~~---------~~~~~l~~-~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~  214 (237)
T 3c3y_A          145 EGSYDFGFVDADKP---------NYIKYHER-LMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLA  214 (237)
T ss_dssp             TTCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCcCEEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHh
Confidence            47899999996421         13578998 7999999999988531    11000  0111    2334444455555


Q ss_pred             CceeEEEeeccccCCceEEEEEecC
Q 019699          243 KYVVPYSAHIPSFADTWGWIMASDS  267 (337)
Q Consensus       243 ~~v~~~~~~vP~~~~~~~~~~as~~  267 (337)
                      .+.....+.+|.+.   |+.++.|.
T Consensus       215 ~~~~~~~~~lp~~d---G~~~~~~~  236 (237)
T 3c3y_A          215 ADPRIEIVHLPLGD---GITFCRRL  236 (237)
T ss_dssp             HCTTEEEEEECSTT---CEEEEEEC
T ss_pred             cCCCeEEEEEEeCC---ceEEEEEc
Confidence            55555566778754   46777654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.51  E-value=1.4e-13  Score=121.76  Aligned_cols=150  Identities=17%  Similarity=0.214  Sum_probs=103.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -.++++++.+|+.+++....+ ||+|
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~-fD~v  130 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG---LIDRVELQVGDPLGIAAGQRD-IDIL  130 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS---GGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCceEEEEEecHHHHhccCCC-CCEE
Confidence            4678999999999999999998754 6799999999999999999886432   135899999999998876556 9999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC-CCcCC---ChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AGIFS---HTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~-p~~~~---~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      ++|...         .....+++. +.+.|+|||++++.... .+...   ..+..+.+.+.++.++.+.......+|..
T Consensus       131 ~~~~~~---------~~~~~~l~~-~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  200 (210)
T 3c3p_A          131 FMDCDV---------FNGADVLER-MNRCLAKNALLIAVNALRRGSVAESHEDPETAALREFNHHLSRRRDFFTTIVPVG  200 (210)
T ss_dssp             EEETTT---------SCHHHHHHH-HGGGEEEEEEEEEESSSSCC------------CCCHHHHHHTTCTTEEEEEECST
T ss_pred             EEcCCh---------hhhHHHHHH-HHHhcCCCeEEEEECccccCcccCcccchHHHHHHHHHHHHhhCCCeEEEEEecC
Confidence            999531         123578898 89999999999885310 00000   11111222233444444444444556764


Q ss_pred             CCceEEEEEecC
Q 019699          256 ADTWGWIMASDS  267 (337)
Q Consensus       256 ~~~~~~~~as~~  267 (337)
                         +++.++.|+
T Consensus       201 ---~G~~~~~~~  209 (210)
T 3c3p_A          201 ---NGVLLGYRL  209 (210)
T ss_dssp             ---TCEEEEEEC
T ss_pred             ---CceEEEEeC
Confidence               457777764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.51  E-value=3.1e-13  Score=121.85  Aligned_cols=105  Identities=22%  Similarity=0.387  Sum_probs=88.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvI  179 (337)
                      .++++||+||||+|..+..+++..+..+|++||+++.+++.|++++....   -.++++++.+|+.+++. ...++||+|
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH---FENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhhccCCccEE
Confidence            46789999999999999999986667899999999999999999986532   13589999999998877 556789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++|...+.         ..++++. +.+.|+|||++++.
T Consensus       147 ~~~~~~~~---------~~~~l~~-~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKAQ---------SKKFFEI-YTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSSS---------HHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EEcCcHHH---------HHHHHHH-HHHhcCCCeEEEEe
Confidence            99964211         3578898 79999999999884

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=8.3e-14  Score=126.20  Aligned_cols=134  Identities=13%  Similarity=0.085  Sum_probs=98.4

Q ss_pred             EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC
Q 019699           72 LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE  151 (337)
Q Consensus        72 L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~  151 (337)
                      |.+.|...+ +.-+..|.+.++..   ..+++.+||+||||+|.++..++++.+ .++++||++|.+++.|++++...  
T Consensus        34 l~~~g~~vm-~~we~~~m~~~a~~---~~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~--  106 (236)
T 3orh_A           34 LRILGKPVM-ERWETPYMHALAAA---ASSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ--  106 (236)
T ss_dssp             EEETTEEEE-EGGGHHHHHHHHHH---HTTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC--
T ss_pred             hhhcCHHHH-HHHHHHHHHHHHHh---hccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC--
Confidence            444454322 23345566665532   236778999999999999999998754 68999999999999999987643  


Q ss_pred             CCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCC-chHHHHHHHhccccCCCceEEEe
Q 019699          152 AFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       152 ~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                         ..+++++.+|+...+... .+.||.|+.|.....  ....++ ....|++. +.++|+|||+|++.
T Consensus       107 ---~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~--~~~~~~~~~~~~~~e-~~rvLkPGG~l~f~  169 (236)
T 3orh_A          107 ---THKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             ---SSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             ---CCceEEEeehHHhhcccccccCCceEEEeeeecc--cchhhhcchhhhhhh-hhheeCCCCEEEEE
Confidence               467899999998887553 478999999986432  111233 23568888 79999999999874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.48  E-value=1.1e-12  Score=119.51  Aligned_cols=106  Identities=18%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC--Ccee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~--~~yD  177 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -.++++++.+|+.+++....  ++||
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~l~~~~~~~~fD  138 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG---VDQRVTLREGPALQSLESLGECPAFD  138 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence            4678999999999999999998754 6899999999999999999986432   13689999999999887654  4899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++|...+         ....+++. +.+.|+|||++++..
T Consensus       139 ~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          139 LIFIDADKP---------NNPHYLRW-ALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEEC
T ss_pred             EEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEeC
Confidence            999987421         12468888 799999999998763

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.47  E-value=2.1e-12  Score=111.09  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=106.4

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||+||||+|.++..+++.  ..+++++|+++.+++.|++.+....  +.++|++++.+|+.+.+.  .++||+
T Consensus        49 ~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~D~  122 (194)
T 1dus_A           49 VVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNK  122 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEE
T ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECchhcccc--cCCceE
Confidence            3456789999999999999999987  5799999999999999999886432  223369999999887654  468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT  258 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~  258 (337)
                      |+++.+...  +   .-....+++. +.+.|+|||.+++....      ......+.+.+++.|..+..+..     ...
T Consensus       123 v~~~~~~~~--~---~~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~-----~~~  185 (194)
T 1dus_A          123 IITNPPIRA--G---KEVLHRIIEE-GKELLKDNGEIWVVIQT------KQGAKSLAKYMKDVFGNVETVTI-----KGG  185 (194)
T ss_dssp             EEECCCSTT--C---HHHHHHHHHH-HHHHEEEEEEEEEEEES------THHHHHHHHHHHHHHSCCEEEEE-----ETT
T ss_pred             EEECCCccc--c---hhHHHHHHHH-HHHHcCCCCEEEEEECC------CCChHHHHHHHHHHhcceEEEec-----CCc
Confidence            999864221  1   1123578888 79999999999887532      23345577788888988765543     233


Q ss_pred             eEEEEEec
Q 019699          259 WGWIMASD  266 (337)
Q Consensus       259 ~~~~~as~  266 (337)
                      |..+.+.|
T Consensus       186 ~~~~~~~k  193 (194)
T 1dus_A          186 YRVLKSKK  193 (194)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEee
Confidence            65566654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.47  E-value=1.1e-12  Score=117.93  Aligned_cols=102  Identities=16%  Similarity=0.225  Sum_probs=85.5

Q ss_pred             eEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEe
Q 019699          105 TIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D  182 (337)
                      +||+||||+|..+..+++. ++..+|++||+|+++++.|++++....  +.+++++++.+|+.+++... .++||+|++|
T Consensus        59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            9999999999999999985 446899999999999999999987532  22368999999999998765 6789999999


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ...+         ...++++. +.+.|+|||++++.
T Consensus       137 ~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          137 VSPM---------DLKALVDA-AWPLLRRGGALVLA  162 (221)
T ss_dssp             CCTT---------THHHHHHH-HHHHEEEEEEEEET
T ss_pred             CcHH---------HHHHHHHH-HHHHcCCCcEEEEe
Confidence            6421         12468888 79999999999985

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.2e-12  Score=113.67  Aligned_cols=109  Identities=10%  Similarity=0.092  Sum_probs=86.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI  179 (337)
                      .++.+||++|||+|.++.++++. +..+|++||+|+.+++.|++++....    -++++++.+|+.+++... .++||+|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccHHHHHhhccCCCccEE
Confidence            56789999999999999988875 46789999999999999999987542    268999999999987654 5789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhcc--ccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKP--RLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~--~L~p~Gvlv~~~~  220 (337)
                      ++|++...  .   .-...++++. +.+  +|+|||+++++..
T Consensus       118 ~~~~p~~~--~---~~~~~~~l~~-~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          118 LADPPYNV--D---SADVDAILAA-LGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EECCCTTS--C---HHHHHHHHHH-HHHSSSCCTTCEEEEEEE
T ss_pred             EECCCCCc--c---hhhHHHHHHH-HHhcCccCCCeEEEEEec
Confidence            99975321  0   0123467776 666  9999999998763

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.46  E-value=1.2e-12  Score=116.46  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc----CCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~----~~~  175 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -.++++++.+|+.+++...    .++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN---LNDRVEVRTGLALDSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            4678999999999999999998754 6799999999999999999986432   1467999999999876542    267


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||+|++|...+         ....+++. +.+.|+|||++++..
T Consensus       134 fD~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          134 FDFIFIDADKQ---------NNPAYFEW-ALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CSEEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEES
T ss_pred             cCEEEEcCCcH---------HHHHHHHH-HHHhcCCCcEEEEeC
Confidence            99999997521         12478888 799999999998863

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.43  E-value=2.8e-12  Score=115.88  Aligned_cols=148  Identities=15%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      +.+.+||+||||+|..+..++...+..+|++||+++.+++.|++......    -++++++.+|+.++...  ..++||+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEeccHHHhcccccccCCccE
Confidence            35789999999999999888875556799999999999999999876432    24699999999886532  2478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFAD  257 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~  257 (337)
                      |+++...    .      -..+++. +.+.|+|||.+++..+..    ..+....+.+.+++. |..+.......|...+
T Consensus       145 V~~~~~~----~------~~~~l~~-~~~~LkpgG~l~~~~g~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  209 (240)
T 1xdz_A          145 VTARAVA----R------LSVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTLGGELENIHSFKLPIEES  209 (240)
T ss_dssp             EEEECCS----C------HHHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCC
T ss_pred             EEEeccC----C------HHHHHHH-HHHhcCCCCEEEEEeCCC----chHHHHHHHHHHHHcCCeEeEEEEEecCCCCC
Confidence            9998631    1      2578888 799999999998875432    234455566666654 4333333334565445


Q ss_pred             ceEEEEEecC
Q 019699          258 TWGWIMASDS  267 (337)
Q Consensus       258 ~~~~~~as~~  267 (337)
                      .+.+++..+.
T Consensus       210 ~~~l~~~~k~  219 (240)
T 1xdz_A          210 DRNIMVIRKI  219 (240)
T ss_dssp             EEEEEEEEEC
T ss_pred             ceEEEEEEec
Confidence            5667777654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.43  E-value=7.8e-13  Score=120.44  Aligned_cols=105  Identities=21%  Similarity=0.352  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      .++++||+||||+|..+..+++.. +..+|++||+++++++.|++++....   -.++++++.+|+.+++...     .+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~~~~~~~~~  135 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK---QEHKIKLRLGPALDTLHSLLNEGGEH  135 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT---CTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHhhccCCC
Confidence            467899999999999999999864 36799999999999999999986532   1468999999999987654     57


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||+|++|....         ....+++. +.+.|+|||++++.
T Consensus       136 ~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          136 QFDFIFIDADKT---------NYLNYYEL-ALKLVTPKGLIAID  169 (242)
T ss_dssp             CEEEEEEESCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CEeEEEEcCChH---------HhHHHHHH-HHHhcCCCeEEEEE
Confidence            899999997411         12468888 79999999999884

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.42  E-value=3.2e-12  Score=113.72  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=86.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-----C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-----~  174 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -.++++++.+|+.+++....     +
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG---LSDKIGLRLSPAKDTLAELIHAGQAW  139 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeCCHHHHHHHhhhccCCC
Confidence            4678999999999999999998744 6899999999999999999986432   13679999999998876532     7


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||+|++|....         ....+++. +.+.|+|||++++.
T Consensus       140 ~fD~v~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          140 QYDLIYIDADKA---------NTDLYYEE-SLKLLREGGLIAVD  173 (225)
T ss_dssp             CEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEe
Confidence            899999987411         12468888 78999999999875

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.42  E-value=3.4e-12  Score=113.86  Aligned_cols=105  Identities=20%  Similarity=0.315  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-----C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-----~  174 (337)
                      ..+++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -.++++++.+|+.+++....     +
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            4678999999999999999998643 6799999999999999999986532   14689999999988865431     6


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||+|++|....         ...++++. +.+.|+|||++++.
T Consensus       145 ~~D~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  178 (229)
T 2avd_A          145 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  178 (229)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            899999986421         12478888 78999999999884

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.41  E-value=2.8e-12  Score=115.62  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=103.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---C--C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--E  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~--~  174 (337)
                      .++++||+||||+|..+..+++..+ ..+|+++|+++..++.|++++....   -.++++++.+|+.+++...   .  +
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~l~~l~~~~~~~  147 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG---VAEKISLRLGPALATLEQLTQGKPLP  147 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            3578999999999999999998744 5799999999999999999886432   1358999999998877543   2  6


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC-CCcC----CChhHHHHHHHHHhhhcCceeEEE
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AGIF----SHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~-p~~~----~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      +||+|++|...+         ...++++. +.+.|+|||++++.... .+..    ...+..+.+.+..+.+..+.....
T Consensus       148 ~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  217 (232)
T 3cbg_A          148 EFDLIFIDADKR---------NYPRYYEI-GLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRI  217 (232)
T ss_dssp             CEEEEEECSCGG---------GHHHHHHH-HHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEE
T ss_pred             CcCEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEE
Confidence            899999996411         12578888 78999999999885311 0000    012233344444444444444444


Q ss_pred             eeccccCCceEEEEEec
Q 019699          250 AHIPSFADTWGWIMASD  266 (337)
Q Consensus       250 ~~vP~~~~~~~~~~as~  266 (337)
                      ..+|...+   +.++.|
T Consensus       218 ~~lp~~dG---~~~~~~  231 (232)
T 3cbg_A          218 SVIPLGDG---MTLALK  231 (232)
T ss_dssp             EEECSBTC---EEEEEE
T ss_pred             EEEEcCCe---EEEEEe
Confidence            55676543   666654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.41  E-value=1.3e-12  Score=114.47  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      .++.+||++|||+|.++..++++.+..+++++|+|+.+++.|++++....     .+++++.+|+.+.+..   ..++||
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-----AVVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-----CceEEEEcchHhhhhhhhhccCccc
Confidence            67789999999999999999998767799999999999999999876532     2789999999987764   347899


Q ss_pred             EEEEeCCCCCCCC------------CCcCCc--------hHHHHHHHhccccCCCce-EEEeCCCCCcCCChhHHHHHHH
Q 019699          178 VIIGDLADPIEGG------------PCYKLY--------TKSFYEFVVKPRLNPEGI-FVTQAGPAGIFSHTEVFSCIYN  236 (337)
Q Consensus       178 vIi~D~~dp~~~~------------p~~~L~--------t~ef~~~~~~~~L~p~Gv-lv~~~~~p~~~~~~~~~~~i~~  236 (337)
                      +|++|++-.....            |...+.        -..|++. +.++|+|||. +++...    ....+.+..+++
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~  178 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL-PPYVLARGRAGVFLEVG----HNQADEVARLFA  178 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTC-CGGGBCSSSEEEEEECT----TSCHHHHHHHTG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH-HHHHhcCCCeEEEEEEC----CccHHHHHHHHH
Confidence            9999876321000            000000        0577787 7899999999 666543    223444443333


Q ss_pred             HHhhhcCceeEEEeeccccCCceEEEEEecCC
Q 019699          237 TLRQVFKYVVPYSAHIPSFADTWGWIMASDSP  268 (337)
Q Consensus       237 ~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p  268 (337)
                      .++.-|..+..+    +.+.+...++++.+..
T Consensus       179 ~~~~gf~~~~~~----~~~~~~~r~~~~~~~~  206 (215)
T 4dzr_A          179 PWRERGFRVRKV----KDLRGIDRVIAVTREP  206 (215)
T ss_dssp             GGGGGTEECCEE----ECTTSCEEEEEEEECC
T ss_pred             HhhcCCceEEEE----EecCCCEEEEEEEEcC
Confidence            334456655433    2334445677887654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=1.9e-12  Score=118.93  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=100.8

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh---ccCCCCCCCeEEEEccHHHHHhh--
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAFSDPRLELVINDARAELES--  171 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~---~~~~~~d~rv~v~~~D~~~~l~~--  171 (337)
                      ++...++.+||+||||+|.++..++++.+..+|++||+++.+++.|++++..   +.  + ..+++++.+|..+++..  
T Consensus        31 ~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l-~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           31 LVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--F-SARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             TCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--T-GGGEEEEECCTTCCHHHHH
T ss_pred             HhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--C-cceEEEEeCCHHHHhhhhh
Confidence            3334456799999999999999999887678999999999999999998765   32  1 34799999999877531  


Q ss_pred             ----cCCceeEEEEeCCCCCCCC---C------C---cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699          172 ----RKESYDVIIGDLADPIEGG---P------C---YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (337)
Q Consensus       172 ----~~~~yDvIi~D~~dp~~~~---p------~---~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~  235 (337)
                          ..++||+|++|++.....+   +      +   ....-.++++. +.+.|+|||.+++-..       ...+..+.
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-------~~~~~~~~  179 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT-ASAIMVSGGQLSLISR-------PQSVAEII  179 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHH-HHHHEEEEEEEEEEEC-------GGGHHHHH
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH-HHHHcCCCCEEEEEEc-------HHHHHHHH
Confidence                2478999999975321100   0      0   01123578888 7999999999987542       22455677


Q ss_pred             HHHhhhcCceeEEE
Q 019699          236 NTLRQVFKYVVPYS  249 (337)
Q Consensus       236 ~~l~~vF~~v~~~~  249 (337)
                      ..+++.|..+....
T Consensus       180 ~~l~~~~~~~~i~~  193 (260)
T 2ozv_A          180 AACGSRFGGLEITL  193 (260)
T ss_dssp             HHHTTTEEEEEEEE
T ss_pred             HHHHhcCCceEEEE
Confidence            77777666554443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.38  E-value=4.4e-12  Score=113.72  Aligned_cols=129  Identities=15%  Similarity=0.217  Sum_probs=99.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDvI  179 (337)
                      +..+||+||||+|.++..+++..+..+|++||+++.+++.|++......    -++++++.+|+.+++..  ..++||.|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~----l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG----LSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT----CSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHcCCCChheE
Confidence            5678999999999999999988777899999999999999999875432    25799999999998763  35789999


Q ss_pred             EEeCCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      ++..++|+....  ...+...+|++. +.+.|+|||++++.+.      .......+...+.+.
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~-~~r~LkpGG~l~i~td------~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAEL-VKSKLQLGGVFHMATD------WEPYAEHMLEVMSSI  166 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHTS
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHhC
Confidence            999877762111  123455689998 8999999999988753      234455555555543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.38  E-value=1e-11  Score=113.59  Aligned_cols=147  Identities=16%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      +.+.+|||||||+|..+..++...+..+|++||+++++++.|+++.....    -.+++++.+|+.++...  ..++||+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----l~~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG----LKGARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCceEEEECcHHHhhcccccCCCceE
Confidence            45789999999999999998887677899999999999999999876432    23599999999887642  2478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFAD  257 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~  257 (337)
                      |++....+          -..+++. +.+.|+|||.+++..+..    ..+.+..+.+.++.. |.........+|....
T Consensus       155 I~s~a~~~----------~~~ll~~-~~~~LkpgG~l~~~~g~~----~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~  219 (249)
T 3g89_A          155 AVARAVAP----------LCVLSEL-LLPFLEVGGAAVAMKGPR----VEEELAPLPPALERLGGRLGEVLALQLPLSGE  219 (249)
T ss_dssp             EEEESSCC----------HHHHHHH-HGGGEEEEEEEEEEECSC----CHHHHTTHHHHHHHHTEEEEEEEEEECTTTCC
T ss_pred             EEECCcCC----------HHHHHHH-HHHHcCCCeEEEEEeCCC----cHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCC
Confidence            99986421          1467887 799999999988765421    233444555555544 4433434446676544


Q ss_pred             ceEEEEEec
Q 019699          258 TWGWIMASD  266 (337)
Q Consensus       258 ~~~~~~as~  266 (337)
                      ...+++..|
T Consensus       220 ~R~l~~~~k  228 (249)
T 3g89_A          220 ARHLVVLEK  228 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEEEEe
Confidence            445555554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.38  E-value=4.8e-12  Score=114.20  Aligned_cols=106  Identities=20%  Similarity=0.319  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-------  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-------  172 (337)
                      .++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++....   -+++++++.+|+.+++...       
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG---LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            4678999999999999999998754 5799999999999999999986432   1357999999998876532       


Q ss_pred             --------C-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          173 --------K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 --------~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                              . ++||+|+++...+         ...++++. +.+.|+|||++++..
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADKE---------NYPNYYPL-ILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             cccccccCCCCCcCEEEEeCCHH---------HHHHHHHH-HHHHcCCCeEEEEEc
Confidence                    2 6899999985321         12478888 799999999998864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.38  E-value=1.8e-12  Score=115.61  Aligned_cols=108  Identities=12%  Similarity=0.166  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-----C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-----~  174 (337)
                      .++++||+||||+|..+..+++.. +..+|++||+++.+++.|++++....   -.++++++.+|+.+++....     +
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~~  133 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD  133 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCceEEEECCHHHHHHHHHHhcCCC
Confidence            467899999999999999999863 46799999999999999999986532   13579999999999887654     6


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||+|++|.....      ..-..++++. + +.|+|||++++..
T Consensus       134 ~fD~V~~d~~~~~------~~~~~~~~~~-~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          134 TLDMVFLDHWKDR------YLPDTLLLEK-C-GLLRKGTVLLADN  170 (221)
T ss_dssp             CCSEEEECSCGGG------HHHHHHHHHH-T-TCCCTTCEEEESC
T ss_pred             ceEEEEEcCCccc------chHHHHHHHh-c-cccCCCeEEEEeC
Confidence            8999999974211      1112357776 6 8999999999864

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.37  E-value=1.8e-12  Score=121.56  Aligned_cols=150  Identities=11%  Similarity=0.122  Sum_probs=99.8

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      ++...++.+||+||||+|.++..++.+.+..+|++||+|+++++.|++++....  +  .+++++.+|+.++ .  .+.|
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g--l--~~v~~v~gDa~~l-~--d~~F  189 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG--V--DGVNVITGDETVI-D--GLEF  189 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT--C--CSEEEEESCGGGG-G--GCCC
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC--C--CCeEEEECchhhC-C--CCCc
Confidence            334567899999999988655443333346899999999999999999986532  2  6899999999885 2  4789


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCC-cCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~-~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      |+|+++...+         -..++++. +.++|+|||++++...... ....+    .+.....+.|....   ...|+-
T Consensus       190 DvV~~~a~~~---------d~~~~l~e-l~r~LkPGG~Lvv~~~~~~r~~l~~----~v~~~~~~gf~~~~---~~~p~~  252 (298)
T 3fpf_A          190 DVLMVAALAE---------PKRRVFRN-IHRYVDTETRIIYRTYTGMRAILYA----PVSDDDITGFRRAG---VVLPSG  252 (298)
T ss_dssp             SEEEECTTCS---------CHHHHHHH-HHHHCCTTCEEEEEECCGGGGGSSC----CCCTGGGTTEEEEE---EECCCT
T ss_pred             CEEEECCCcc---------CHHHHHHH-HHHHcCCCcEEEEEcCcchhhhccc----cCChhhhhhhhhee---EECCCC
Confidence            9999976421         12578898 8999999999998753210 00001    11112333454432   233543


Q ss_pred             CCceEEEEEecCCCC
Q 019699          256 ADTWGWIMASDSPFT  270 (337)
Q Consensus       256 ~~~~~~~~as~~p~~  270 (337)
                      ...|.+++|.|...+
T Consensus       253 ~v~N~vv~a~k~~~~  267 (298)
T 3fpf_A          253 KVNNTSVLVFKCPDK  267 (298)
T ss_dssp             TCCCEEEEEEECC--
T ss_pred             CcCcEEEEEEccCCc
Confidence            335778999887543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.36  E-value=2.9e-11  Score=111.52  Aligned_cols=176  Identities=16%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             CceEEEEcCccccccCChhhHHHHHHhHHHhc-CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699           68 FGKALVIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus        68 ~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~-~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      +|+.+.++.......++    .+.++...+-. ..++.+||+||||+|.++..+++..+..+|+++|+++.+++.|+++.
T Consensus        78 ~~~~~~~~~~~~ipr~~----te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~  153 (276)
T 2b3t_A           78 WSLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA  153 (276)
T ss_dssp             TTEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCcccCch----HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            45666666554444333    33333221111 14567999999999999999997766789999999999999999987


Q ss_pred             hhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC-----------CCCcCC--------chHHHHHHHhcc
Q 019699          147 VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG-----------GPCYKL--------YTKSFYEFVVKP  207 (337)
Q Consensus       147 ~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~-----------~p~~~L--------~t~ef~~~~~~~  207 (337)
                      ....    -++++++.+|..+.+.  .++||+|+++++.....           .|...+        .-..+++. +.+
T Consensus       154 ~~~~----~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~-~~~  226 (276)
T 2b3t_A          154 QHLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRN  226 (276)
T ss_dssp             HHHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGG
T ss_pred             HHcC----CCceEEEEcchhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHH-HHH
Confidence            6542    2479999999987653  46899999997632110           121122        22567887 799


Q ss_pred             ccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEe
Q 019699          208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMAS  265 (337)
Q Consensus       208 ~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as  265 (337)
                      .|+|||.+++..+.    ...+.+   .+.+++. |..+..+.    .+.+...+++|.
T Consensus       227 ~LkpgG~l~~~~~~----~~~~~~---~~~l~~~Gf~~v~~~~----d~~g~~r~~~~~  274 (276)
T 2b3t_A          227 ALVSGGFLLLEHGW----QQGEAV---RQAFILAGYHDVETCR----DYGDNERVTLGR  274 (276)
T ss_dssp             GEEEEEEEEEECCS----SCHHHH---HHHHHHTTCTTCCEEE----CTTSSEEEEEEE
T ss_pred             hcCCCCEEEEEECc----hHHHHH---HHHHHHCCCcEEEEEe----cCCCCCcEEEEE
Confidence            99999999987542    233333   3444443 66554332    334445566664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.36  E-value=1.3e-11  Score=105.11  Aligned_cols=124  Identities=23%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|.++..+++..+..+|+++|+++.+++.|++.+....   -..++ ++.+|+.+.+....++||+|
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~D~i   98 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG---VSDRI-AVQQGAPRAFDDVPDNPDVI   98 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT---CTTSE-EEECCTTGGGGGCCSCCSEE
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC---CCCCE-EEecchHhhhhccCCCCCEE
Confidence            355679999999999999999988667899999999999999999876432   12378 88899877776544789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY  244 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~  244 (337)
                      +++....       .   ..+++. +.+.|+|||.+++...      ..+....+.+.+++....
T Consensus        99 ~~~~~~~-------~---~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~~~~~~~~  146 (178)
T 3hm2_A           99 FIGGGLT-------A---PGVFAA-AWKRLPVGGRLVANAV------TVESEQMLWALRKQFGGT  146 (178)
T ss_dssp             EECC-TT-------C---TTHHHH-HHHTCCTTCEEEEEEC------SHHHHHHHHHHHHHHCCE
T ss_pred             EECCccc-------H---HHHHHH-HHHhcCCCCEEEEEee------ccccHHHHHHHHHHcCCe
Confidence            9876422       1   467887 7999999999998752      223344455556555433

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.36  E-value=9.6e-12  Score=110.23  Aligned_cols=130  Identities=15%  Similarity=0.211  Sum_probs=97.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      ++..+||+||||+|.++..+++..+..++++||+++.+++.|+++.....    -++++++.+|+.++... ..++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            45679999999999999999988777899999999999999999876432    25899999999874321 24679999


Q ss_pred             EEeCCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      +++.++|+....  ...+...++++. +.++|+|||++++...      .......+.+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~~~~~  172 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY  172 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             EEECCCCccccchhhhccCCHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHHC
Confidence            999887752100  012445789998 8999999999998753      233445555555544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.35  E-value=1.5e-11  Score=117.25  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=99.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      .++.+||++|||+|.++..+++.. . +|++||+|+.+++.|++++..+.  +.+.+++++.+|+.+++...   .++||
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~g-a-~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD  227 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAG-A-EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYD  227 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT-C-EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             CCCCcEEEcccccCHHHHHHHHcC-C-EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCce
Confidence            456799999999999999999863 3 99999999999999999987642  33346999999999988642   57899


Q ss_pred             EEEEeCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH-HHhhhcCceeEEEee
Q 019699          178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN-TLRQVFKYVVPYSAH  251 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~-~l~~vF~~v~~~~~~  251 (337)
                      +|++|++.-.. .+...++     -.++++. +.+.|+|||++++...... ....+.+..+++ .+++....+......
T Consensus       228 ~Ii~dPP~~~~-~~~~~~~~~~~~~~~ll~~-~~~~LkpgG~lli~~~~~~-~~~~~~~~~~l~~a~~~~g~~v~~~e~~  304 (332)
T 2igt_A          228 IILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI-RASFYSMHELMRETMRGAGGVVASGELV  304 (332)
T ss_dssp             EEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT-TSCHHHHHHHHHHHTTTSCSEEEEEEEE
T ss_pred             EEEECCccccC-CchHHHHHHHHHHHHHHHH-HHHhcCcCcEEEEEECCCC-CCCHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            99999862110 1111111     2467887 7899999999665442211 223444444443 444443344444444


Q ss_pred             cccc
Q 019699          252 IPSF  255 (337)
Q Consensus       252 vP~~  255 (337)
                      .|..
T Consensus       305 ~p~~  308 (332)
T 2igt_A          305 IREA  308 (332)
T ss_dssp             EECC
T ss_pred             cccC
Confidence            5544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.35  E-value=7.8e-12  Score=109.60  Aligned_cols=141  Identities=11%  Similarity=0.124  Sum_probs=99.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++.+||+||||+|..+..+++..+..+++++|+++.+++.|++.+....    -++++++.+|+.++.  ..++||+|++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP--SEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEecchhhCC--ccCCcCEEEE
Confidence            4679999999999999999987667899999999999999999876432    235999999987754  2468999998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGW  261 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~  261 (337)
                      ....+          -..+++. +.+.|+|||.+++..+.    ...+.+..+   ++ -|..+.......|.+.+...+
T Consensus       139 ~~~~~----------~~~~l~~-~~~~L~~gG~l~~~~~~----~~~~~~~~~---~~-g~~~~~~~~~~~~~~~~~~~~  199 (207)
T 1jsx_A          139 RAFAS----------LNDMVSW-CHHLPGEQGRFYALKGQ----MPEDEIALL---PE-EYQVESVVKLQVPALDGERHL  199 (207)
T ss_dssp             SCSSS----------HHHHHHH-HTTSEEEEEEEEEEESS----CCHHHHHTS---CT-TEEEEEEEEEECC--CCEEEE
T ss_pred             eccCC----------HHHHHHH-HHHhcCCCcEEEEEeCC----CchHHHHHH---hc-CCceeeeeeeccCCCCCceEE
Confidence            64311          2478888 79999999999887642    122222221   22 344444333346666665666


Q ss_pred             EEEecC
Q 019699          262 IMASDS  267 (337)
Q Consensus       262 ~~as~~  267 (337)
                      +++.|.
T Consensus       200 ~~~~k~  205 (207)
T 1jsx_A          200 VVIKAN  205 (207)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            776654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.35  E-value=1.9e-11  Score=107.25  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||+||||+|.++..+++..+..+|++||+++.+++.|++++....    -++++++.+|+.+.+... ++||+
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~-~~~D~  111 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV----ARNVTLVEAFAPEGLDDL-PDPDR  111 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT----CTTEEEEECCTTTTCTTS-CCCSE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeCChhhhhhcC-CCCCE
Confidence            3456789999999999999999998767899999999999999999876542    268999999987766433 67999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      |+++...+         ...++++. +.+.|+|||.+++...      ..+....+.+.+++.
T Consensus       112 i~~~~~~~---------~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          112 VFIGGSGG---------MLEEIIDA-VDRRLKSEGVIVLNAV------TLDTLTKAVEFLEDH  158 (204)
T ss_dssp             EEESCCTT---------CHHHHHHH-HHHHCCTTCEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred             EEECCCCc---------CHHHHHHH-HHHhcCCCeEEEEEec------ccccHHHHHHHHHHC
Confidence            99987532         23578888 7999999999998742      233455666666655

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.35  E-value=2.7e-12  Score=109.91  Aligned_cols=108  Identities=15%  Similarity=0.218  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||++|||+|..+..+++. +..+|++||+|+.+++.|++++....   -.++++++.+|+.+++....++||+|+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~i~  105 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF  105 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcHHHhHHhhcCCCCEEE
Confidence            46789999999999999999987 45799999999999999999876432   125799999999998876667899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhc--cccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~--~~L~p~Gvlv~~~~  220 (337)
                      +|++-.       .....++++. +.  +.|+|||++++...
T Consensus       106 ~~~~~~-------~~~~~~~~~~-l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          106 LDPPYA-------KETIVATIEA-LAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             ECCSSH-------HHHHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             ECCCCC-------cchHHHHHHH-HHhCCCcCCCcEEEEEEC
Confidence            986421       1123466776 55  89999999998764

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.34  E-value=1.6e-11  Score=109.21  Aligned_cols=130  Identities=10%  Similarity=0.119  Sum_probs=97.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      .+..+||+||||+|.++..+++..+..++++||+++.+++.|++......    -++++++.+|+.++... ..+.||.|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            45678999999999999999987777899999999999999999875432    25799999999875321 24679999


Q ss_pred             EEeCCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       180 i~D~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      ++..++|+....  ...+....|++. +.+.|+|||.+++.+.      .......+...+.+.
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~-~~~~LkpgG~l~~~td------~~~~~~~~~~~~~~~  169 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY  169 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             EEECCCCCcCccccccccCcHHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence            998887762110  013456789998 8999999999988752      233444555555543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.32  E-value=5e-12  Score=108.64  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      .++.+||++|||+|.++.+++++ +..+|++||+|+.+++.|++++....   -.++++++.+|+.+++...   .++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhC---CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            46689999999999999998885 45799999999999999999886542   1358999999999876532   57899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHh--ccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~--~~~L~p~Gvlv~~~~  220 (337)
                      +|++|++..       .....++++. +  .++|+|||++++...
T Consensus       119 ~i~~~~~~~-------~~~~~~~~~~-l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          119 LVLLDPPYA-------KQEIVSQLEK-MLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             EEEECCCGG-------GCCHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             EEEECCCCC-------chhHHHHHHH-HHHhcccCCCCEEEEEeC
Confidence            999987511       1122456665 6  788999999988754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.32  E-value=1e-11  Score=112.69  Aligned_cols=126  Identities=21%  Similarity=0.263  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++....   -..+++++.+|+.+.+.  .++||+
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~  165 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG---FDDRVTIKLKDIYEGIE--EENVDH  165 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT---CTTTEEEECSCGGGCCC--CCSEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC---CCCceEEEECchhhccC--CCCcCE
Confidence            456789999999999999999987 667899999999999999999986532   13569999999986643  367999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh---cCceeEE
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV---FKYVVPY  248 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v---F~~v~~~  248 (337)
                      |++|.++++           ++++. +.+.|+|||.+++...      ..+....+.+.+++.   |..+..+
T Consensus       166 v~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          166 VILDLPQPE-----------RVVEH-AAKALKPGGFFVAYTP------CSNQVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             EEECSSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred             EEECCCCHH-----------HHHHH-HHHHcCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCccccEEE
Confidence            999876432           45677 7899999999988742      234455666777765   7766554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.31  E-value=2.6e-11  Score=110.82  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=94.9

Q ss_pred             HhcCC-CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CC
Q 019699           97 LLHHP-NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KE  174 (337)
Q Consensus        97 l~~~~-~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~  174 (337)
                      ++... ++.+||+||||+|.++..+++..+ .+|++||+++.+++.|++++..+.  + ..+++++.+|+.++.... .+
T Consensus        43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~--~-~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ--L-EDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             HCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT--C-TTTEEEECSCGGGGGGTSCTT
T ss_pred             HhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC--C-cccEEEEECcHHHhhhhhccC
Confidence            33334 678999999999999999998754 499999999999999999987542  1 358999999999887533 57


Q ss_pred             ceeEEEEeCCCCCC---C--CCC--c-------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          175 SYDVIIGDLADPIE---G--GPC--Y-------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       175 ~yDvIi~D~~dp~~---~--~p~--~-------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      +||+|++|++--..   .  .+.  .       ...-.++++. +.+.|+|||.+++-..       ......+...+++
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-------~~~~~~~~~~l~~  190 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRV-AASLLKQGGKANFVHR-------PERLLDIIDIMRK  190 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHH-HHHHEEEEEEEEEEEC-------TTTHHHHHHHHHH
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHH-HHHHccCCcEEEEEEc-------HHHHHHHHHHHHH
Confidence            89999999762110   0  000  0       0112468888 7999999999987432       1234455666665


Q ss_pred             h
Q 019699          241 V  241 (337)
Q Consensus       241 v  241 (337)
                      .
T Consensus       191 ~  191 (259)
T 3lpm_A          191 Y  191 (259)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.30  E-value=3.9e-11  Score=106.98  Aligned_cols=135  Identities=16%  Similarity=0.125  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +++.+||+|||| +|.++..+++.. ..+|+++|+|+.+++.|++++....     .+++++.+|+..+..-..++||+|
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-----SNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEeCCchhhhhcccCceeEE
Confidence            567899999999 999999999875 5799999999999999999886542     289999999743322234789999


Q ss_pred             EEeCCCCCCCC-----C--------CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          180 IGDLADPIEGG-----P--------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       180 i~D~~dp~~~~-----p--------~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      +++++-.....     +        ...-....+++. +.+.|+|||.+++...     ........+.+.+++..-.+.
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~l~~~g~~~~  201 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE-AFDHLNPGGKVALYLP-----DKEKLLNVIKERGIKLGYSVK  201 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHH-HGGGEEEEEEEEEEEE-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHH-HHHHhCCCeEEEEEec-----ccHhHHHHHHHHHHHcCCceE
Confidence            99976321000     0        000112678998 7999999999987542     123455667777777643444


Q ss_pred             E
Q 019699          247 P  247 (337)
Q Consensus       247 ~  247 (337)
                      .
T Consensus       202 ~  202 (230)
T 3evz_A          202 D  202 (230)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.29  E-value=8.5e-12  Score=115.01  Aligned_cols=108  Identities=15%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .++..+||+||||+|..+..++++.  +..+|++||+++.+++.||+.+....   ...+++++.+|+.++   ..+.||
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~~~---~~~~~d  141 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI---AIENAS  141 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTTTC---CCCSEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccccc---cccccc
Confidence            4667899999999999999998863  45689999999999999999876432   246899999998653   236799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++...-..  -+  ..-...+++. +++.|+|||++++.
T Consensus       142 ~v~~~~~l~~--~~--~~~~~~~l~~-i~~~LkpGG~lii~  177 (261)
T 4gek_A          142 MVVLNFTLQF--LE--PSERQALLDK-IYQGLNPGGALVLS  177 (261)
T ss_dssp             EEEEESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cceeeeeeee--cC--chhHhHHHHH-HHHHcCCCcEEEEE
Confidence            9998764222  11  0112357888 79999999998874

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.29  E-value=2.1e-11  Score=107.44  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=84.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCc-eeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES-YDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~-yDvI  179 (337)
                      ++.+||++|||+|.++.++++.. ..+|++||+|+.+++.|++++....  +.+++++++.+|+.+++.. ..++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHhhccCCCCCEE
Confidence            56799999999999999877763 4789999999999999999886542  2126899999999998764 2467 9999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHh--ccccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~--~~~L~p~Gvlv~~~~  220 (337)
                      ++|++-..       -...++++. +  .+.|+|||++++...
T Consensus       130 ~~~~~~~~-------~~~~~~l~~-~~~~~~LkpgG~l~i~~~  164 (201)
T 2ift_A          130 FLDPPFHF-------NLAEQAISL-LCENNWLKPNALIYVETE  164 (201)
T ss_dssp             EECCCSSS-------CHHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             EECCCCCC-------ccHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence            99976211       112466776 6  567999999988754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.29  E-value=2.1e-11  Score=107.57  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +..+||++|||+|.++.++++.. ..+|++||+|+.+++.|++++....    -++++++.+|+.+++....++||+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            46799999999999999877763 4699999999999999999886542    268999999999988665678999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhc--cccCCCceEEEeCC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG  220 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~--~~L~p~Gvlv~~~~  220 (337)
                      |++...      . ...++++. +.  +.|+|||++++...
T Consensus       129 ~~p~~~------~-~~~~~l~~-l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFRR------G-LLEETINL-LEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSST------T-THHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred             CCCCCC------C-cHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence            975211      1 12456666 54  45999999988753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.29  E-value=2.2e-11  Score=112.95  Aligned_cols=129  Identities=16%  Similarity=0.071  Sum_probs=96.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.++||++|||+|.++..+++... .+|++||+++.+++.|+++...+.  + +.+++++.+|+.+++.  .++||+|+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~--~-~~~v~~~~~D~~~~~~--~~~fD~Vi  197 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNK--V-EDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTT--C-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcC--C-CceEEEEECCHHHhcc--cCCccEEE
Confidence            4578999999999999999998753 389999999999999999987653  1 3579999999988875  57899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      +|++..          ..++++. +.+.|+|||++++...++......+.+..+.+.+++..-.+.
T Consensus       198 ~~~p~~----------~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             ECCchh----------HHHHHHH-HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence            986521          1357777 789999999998865432112223455666666766644443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.28  E-value=1.7e-11  Score=103.65  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=82.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv  178 (337)
                      ++++||++|||+|..+..++++.  .+|++||+|+.+++.|++++....     -+++++.+|+.+++...   .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG-----LGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT-----CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcC-----CceEEEeccHHHHHHhhhccCCceEE
Confidence            67899999999999999999874  349999999999999999887542     17999999999876532   348999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhc--cccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~--~~L~p~Gvlv~~~~  220 (337)
                      |+++.+...        ...++++. +.  ++|+|||++++...
T Consensus       114 i~~~~~~~~--------~~~~~~~~-~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          114 AFMAPPYAM--------DLAALFGE-LLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTTS--------CTTHHHHH-HHHHTCEEEEEEEEEEEE
T ss_pred             EEECCCCch--------hHHHHHHH-HHhhcccCCCcEEEEEeC
Confidence            999975211        12356776 66  89999999998764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.28  E-value=1.2e-11  Score=111.21  Aligned_cols=109  Identities=9%  Similarity=0.076  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI  179 (337)
                      .+..+||+||||+|.++..++++. ..+|++||+++.+++.|+++....     .++++++.+|+.+.+... .++||+|
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc-----CCCeEEEecCHHHhhcccCCCceEEE
Confidence            456799999999999999997754 458999999999999999976543     368999999999875433 4789999


Q ss_pred             EEeCCCCCCCCCCcCCc-hHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~-t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++|.....  .+..+.- ...+++. ++++|+|||++++.
T Consensus       133 ~~d~~~~~--~~~~~~~~~~~~l~~-~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          133 LYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             EECCcccc--hhhhhhhhHHHHHHH-HHHhcCCCeEEEEE
Confidence            99754221  1111111 1256888 79999999999864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.28  E-value=5.1e-11  Score=104.47  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=99.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++. +..+|+++|+++.+++.|++++....    -++++++.+|+.++.   .++||+|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~~fD~i~  130 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNG----IYDIALQKTSLLADV---DGKFDLIV  130 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT----CCCCEEEESSTTTTC---CSCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEeccccccC---CCCceEEE
Confidence            56789999999999999998886 45799999999999999999886542    134999999987654   47899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTW  259 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~  259 (337)
                      ++....       .  ...+++. +.+.|+|||.+++....      ......+.+.+++. |..+....      .+.|
T Consensus       131 ~~~~~~-------~--~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~Gf~~~~~~~------~~~w  188 (205)
T 3grz_A          131 ANILAE-------I--LLDLIPQ-LDSHLNEDGQVIFSGID------YLQLPKIEQALAENSFQIDLKMR------AGRW  188 (205)
T ss_dssp             EESCHH-------H--HHHHGGG-SGGGEEEEEEEEEEEEE------GGGHHHHHHHHHHTTEEEEEEEE------ETTE
T ss_pred             ECCcHH-------H--HHHHHHH-HHHhcCCCCEEEEEecC------cccHHHHHHHHHHcCCceEEeec------cCCE
Confidence            986421       1  2567787 78999999999875311      12344555566655 55443322      2447


Q ss_pred             EEEEEecCC
Q 019699          260 GWIMASDSP  268 (337)
Q Consensus       260 ~~~~as~~p  268 (337)
                      ..++..+.+
T Consensus       189 ~~~~~~~~~  197 (205)
T 3grz_A          189 IGLAISRKH  197 (205)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEeccc
Confidence            666665554

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.27  E-value=1.4e-11  Score=110.56  Aligned_cols=105  Identities=22%  Similarity=0.320  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDv  178 (337)
                      .++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++++....   -.++++++.+|+.+++...  .++||+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG---LESRIELLFGDALQLGEKLELYPLFDV  129 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhcccCCCccE
Confidence            45689999999999999999987666899999999999999999886432   1358999999998876554  578999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++|...+         ...++++. +.+.|+|||++++.
T Consensus       130 I~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          130 LFIDAAKG---------QYRRFFDM-YSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEGGGS---------CHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             EEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence            99987522         23578888 79999999999886

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.27  E-value=2.6e-11  Score=109.95  Aligned_cols=133  Identities=12%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--CCCCCCCeEEEEccHHHHHhh--cCCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELES--RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~d~rv~v~~~D~~~~l~~--~~~~y  176 (337)
                      .+..+||+||||+|.++..+++..+...+++||+++.+++.|++......  .....++++++.+|+.+++..  ..++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            45568999999999999999988777899999999999999998754210  001236899999999875542  35789


Q ss_pred             eEEEEeCCCCCCCC--CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          177 DVIIGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       177 DvIi~D~~dp~~~~--p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      |.|++..++|+...  ....+....+++. +.++|+|||.+++.+.      .......+.+.+.+
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~-~~~~LkpGG~l~~~td------~~~~~~~~~~~l~~  183 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAE-YAYVLRVGGLVYTITD------VLELHDWMCTHFEE  183 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHH-HHHHCCCCCEEEEEeC------CHHHHHHHHHHHHH
Confidence            99999888776210  0113445689998 8999999999998753      23444445555544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.27  E-value=1.2e-10  Score=102.88  Aligned_cols=119  Identities=16%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|.++.++++.  ..+|++||+++++++.|++......  + +.+++++.+|+.+.+... ..||+|
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g--~-~~~v~~~~~d~~~~~~~~-~~~D~v  126 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG--L-SPRMRAVQGTAPAALADL-PLPEAV  126 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--C-TTTEEEEESCTTGGGTTS-CCCSEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCEEEEeCchhhhcccC-CCCCEE
Confidence            356689999999999999999987  5799999999999999999875432  1 238999999998866543 579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      +++...          ... +++. +.+.|+|||.+++...      ..+....+.+.+++.-
T Consensus       127 ~~~~~~----------~~~-~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          127 FIGGGG----------SQA-LYDR-LWEWLAPGTRIVANAV------TLESETLLTQLHARHG  171 (204)
T ss_dssp             EECSCC----------CHH-HHHH-HHHHSCTTCEEEEEEC------SHHHHHHHHHHHHHHC
T ss_pred             EECCcc----------cHH-HHHH-HHHhcCCCcEEEEEec------CcccHHHHHHHHHhCC
Confidence            987521          123 7888 7899999999998752      3445566666676653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.26  E-value=6.2e-11  Score=102.10  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++..+||+||||+|..+..+++.  ..+|++||+++.+++.|++.+....    -++++++.+|........+++||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG----IENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT----CCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            46689999999999999999987  5799999999999999999886532    26899999777654323357899999


Q ss_pred             EeCC-CCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLA-DPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~-dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++.. -+......  ..-....+++. +.+.|+|||.+++-.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEK-ILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHH-HHHhcCCCcEEEEEE
Confidence            9853 12100000  00112457787 789999999887654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=3.1e-11  Score=105.09  Aligned_cols=115  Identities=13%  Similarity=0.039  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||++|||+|.++..+++.. +..+|++||+++.+++.|++.+....   -.++++++.+|+.++....+++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN---LIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT---CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHhhhccCCceEE
Confidence            456799999999999999999873 35699999999999999999876532   13689999999987765456889999


Q ss_pred             EEeCCC-CCCCCCC--cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLAD-PIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~d-p~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++.+. |......  ..-...++++. +.+.|+|||.+++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSK-AMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHH-HHHhCcCCCEEEEEE
Confidence            999753 2210000  00112468888 799999999988754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.26  E-value=9.6e-11  Score=109.17  Aligned_cols=142  Identities=14%  Similarity=0.170  Sum_probs=97.1

Q ss_pred             CceEEEEcCccccccCChhhHH-HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699           68 FGKALVIDGKLQSAEVDEFIYH-ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus        68 ~G~~L~lDG~~q~~~~de~~Y~-e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      +|..+.++........+..... ..+..++.   ..+.+||+||||+|.++..++++ +..+|++||+++.+++.|+++.
T Consensus        91 ~~~~~~v~~~~lipr~~te~lv~~~l~~~~~---~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~  166 (284)
T 1nv8_A           91 MGLSFLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNA  166 (284)
T ss_dssp             TTEEEECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHH
T ss_pred             CCeEEEeCCCceecChhHHHHHHHHHHHhcc---cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence            4666666655444433311112 22222111   24579999999999999999998 6789999999999999999987


Q ss_pred             hhccCCCCCCCeEEEEccHHHHHhhcCCce---eEEEEeCCCCCCC---------CCCcCCc----hHHHHHHHhc-ccc
Q 019699          147 VVNKEAFSDPRLELVINDARAELESRKESY---DVIIGDLADPIEG---------GPCYKLY----TKSFYEFVVK-PRL  209 (337)
Q Consensus       147 ~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y---DvIi~D~~dp~~~---------~p~~~L~----t~ef~~~~~~-~~L  209 (337)
                      ....  + ..+++++.+|..+.+.   ++|   |+|++|++-....         .|...|+    ..+||+. +. +.|
T Consensus       167 ~~~~--l-~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~-i~~~~l  239 (284)
T 1nv8_A          167 ERHG--V-SDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE-FFGRYD  239 (284)
T ss_dssp             HHTT--C-TTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH-HHHHCC
T ss_pred             HHcC--C-CCceEEEECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH-HHHhcC
Confidence            6542  1 3479999999988664   468   9999997621100         1100011    1278998 78 999


Q ss_pred             CCCceEEEeCC
Q 019699          210 NPEGIFVTQAG  220 (337)
Q Consensus       210 ~p~Gvlv~~~~  220 (337)
                      +|||.+++..+
T Consensus       240 ~pgG~l~~e~~  250 (284)
T 1nv8_A          240 TSGKIVLMEIG  250 (284)
T ss_dssp             CTTCEEEEECC
T ss_pred             CCCCEEEEEEC
Confidence            99999998764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.26  E-value=1.5e-10  Score=102.27  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-CCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.+||+||||+|..+..+++..+..++++||+++.+++.|++.+....-. ...++++++.+|+. .+....++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV-YRDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS-SCCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc-ccccccCCCCEE
Confidence            4678999999999999999998766689999999999999999987543100 01238999999973 333334789999


Q ss_pred             EEeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-       .++..   ..+++. +++.|+|||+++..
T Consensus       107 ~~~~~l-------~~~~~~~~~~~l~~-~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          107 TVIEVI-------EHLDENRLQAFEKV-LFEFTRPQTVIVST  140 (219)
T ss_dssp             EEESCG-------GGCCHHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             EEHHHH-------HhCCHHHHHHHHHH-HHHhhCCCEEEEEc
Confidence            987542       12222   478898 89999999987754

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.25  E-value=4.4e-11  Score=104.85  Aligned_cols=107  Identities=12%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||+||||+|.++..+++. +..+++++|+++.+++.|++.+....   ..++++++.+|+.+. .-..++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~~D~v~  116 (219)
T 3dlc_A           42 ITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN---LNDRIQIVQGDVHNI-PIEDNYADLIV  116 (219)
T ss_dssp             CCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc---ccCceEEEEcCHHHC-CCCcccccEEE
Confidence            34459999999999999999987 45799999999999999999876432   246899999998653 22347899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-...      -....+++. +.+.|+|||.+++..
T Consensus       117 ~~~~l~~~------~~~~~~l~~-~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          117 SRGSVFFW------EDVATAFRE-IYRILKSGGKTYIGG  148 (219)
T ss_dssp             EESCGGGC------SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECchHhhc------cCHHHHHHH-HHHhCCCCCEEEEEe
Confidence            98642210      112578888 799999999988753

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.24  E-value=2.6e-10  Score=97.59  Aligned_cols=122  Identities=18%  Similarity=0.204  Sum_probs=94.7

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||++|||+|..+..+++..  .+++++|+++.+++.+++.+....   .+++++++.+|..+.+... ++||+
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~  103 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCKI-PDIDI  103 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTTS-CCEEE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecCHHHhcccC-CCCCE
Confidence            34567899999999999999999875  799999999999999999876432   1368999999998866542 48999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-c
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-F  242 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F  242 (337)
                      |+++...+       .  ..++++. +.+.|+|||.+++...      ..+....+.+.+++. |
T Consensus       104 v~~~~~~~-------~--~~~~l~~-~~~~l~~gG~l~~~~~------~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          104 AVVGGSGG-------E--LQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLGF  152 (192)
T ss_dssp             EEESCCTT-------C--HHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTTC
T ss_pred             EEECCchH-------H--HHHHHHH-HHHhcCCCcEEEEEec------CcchHHHHHHHHHHCCC
Confidence            99885421       1  2678888 7999999999988642      234455666777765 6

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.24  E-value=5.7e-11  Score=115.41  Aligned_cols=118  Identities=13%  Similarity=0.115  Sum_probs=87.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      ...++||++|||+|+++..+++. +..+|++||+++.+++.|++++..+.  +.+++++++.+|+.+++...   ..+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            46689999999999999999985 35699999999999999999987653  22338999999999988642   46899


Q ss_pred             EEEEeCCCCCCC-CCCcCCc--hHHHHHHHhccccCCCceEEEeCCCC
Q 019699          178 VIIGDLADPIEG-GPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~-~p~~~L~--t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +|++|++.-... +-.....  -.++++. +.+.|+|||++++.+.++
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~-~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence            999998742100 0000110  1235565 578999999999887654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.23  E-value=1.6e-11  Score=112.94  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ++...+||+||||+|..+..++++.  .+|++||+++.+++.|++          .++++++.+|+.+. .-.+++||+|
T Consensus        37 ~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~-~~~~~sfD~v  103 (257)
T 4hg2_A           37 APARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT-GLPPASVDVA  103 (257)
T ss_dssp             SSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC-CCCSSCEEEE
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh-cccCCcccEE
Confidence            4667899999999999999999874  689999999999987754          37899999998653 2235789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-++       +-...+++. ++++|+|||+|++..
T Consensus       104 ~~~~~~h~-------~~~~~~~~e-~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          104 IAAQAMHW-------FDLDRFWAE-LRRVARPGAVFAAVT  135 (257)
T ss_dssp             EECSCCTT-------CCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEeeehhH-------hhHHHHHHH-HHHHcCCCCEEEEEE
Confidence            98654333       223578999 899999999998765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.23  E-value=1.6e-10  Score=102.96  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--hhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~~~~~~yD  177 (337)
                      .+..+||++|||+|.++..++++ .+..+|++||+++.+++.+++....      .++++++.+|+.+..  ....++||
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc------cCCCEEEEccCCCcchhhcccCCce
Confidence            45679999999999999999976 3457999999999999999887543      268999999987632  22346899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCc-C-C-ChhHHHHHHHHHhhhcCceeEEEeeccc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-F-S-HTEVFSCIYNTLRQVFKYVVPYSAHIPS  254 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~-~-~-~~~~~~~i~~~l~~vF~~v~~~~~~vP~  254 (337)
                      +|++|.+.+.        ....+++. +.+.|+|||.+++....... . . ........+..+.+.|..+...  .++.
T Consensus       146 ~v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~~~~~--~~~~  214 (227)
T 1g8a_A          146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERL--NLEP  214 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEE--ECTT
T ss_pred             EEEECCCCHh--------HHHHHHHH-HHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhhceeeeEe--ccCc
Confidence            9999876322        12355887 79999999988774311100 0 1 1122333334445446655443  3444


Q ss_pred             cCCceEEEEEec
Q 019699          255 FADTWGWIMASD  266 (337)
Q Consensus       255 ~~~~~~~~~as~  266 (337)
                      |.....++++.+
T Consensus       215 ~~~~~~~~~~~~  226 (227)
T 1g8a_A          215 YEKDHALFVVRK  226 (227)
T ss_dssp             TSSSEEEEEEEC
T ss_pred             ccCCCEEEEEEe
Confidence            444455666654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.23  E-value=1.7e-10  Score=103.50  Aligned_cols=150  Identities=17%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yDv  178 (337)
                      .+..+||+||||+|.++..+++..+..+|++||+++.+++.|++....      .++++++.+|+.....  ...++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGGTTTSCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCcccccccCccEEE
Confidence            456799999999999999999885567999999999999999987532      2689999999876211  11268999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC---CCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG---PAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPS  254 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~---~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~  254 (337)
                      |+.|..++.        ....+++. +.+.|+|||.+++...   .+........+.+.+..|++. |..+...  .+..
T Consensus       147 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~~--~~~~  215 (230)
T 1fbn_A          147 IYEDVAQPN--------QAEILIKN-AKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV--DIEP  215 (230)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE--ECTT
T ss_pred             EEEecCChh--------HHHHHHHH-HHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEEE--ccCC
Confidence            998764331        13467888 7899999998887321   110000112232333355554 5444332  3333


Q ss_pred             cCCceEEEEEecC
Q 019699          255 FADTWGWIMASDS  267 (337)
Q Consensus       255 ~~~~~~~~~as~~  267 (337)
                      |...+.+++|.++
T Consensus       216 ~~~~~~~v~~~k~  228 (230)
T 1fbn_A          216 FEKDHVMFVGIWE  228 (230)
T ss_dssp             TSTTEEEEEEEEC
T ss_pred             CccceEEEEEEeC
Confidence            4334667777764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.22  E-value=6.6e-11  Score=107.34  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=89.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC----CCCCCeEEEEccHHHHHhh--cCCc
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----FSDPRLELVINDARAELES--RKES  175 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~----~~d~rv~v~~~D~~~~l~~--~~~~  175 (337)
                      +..+||+||||+|.++..+++..+..+|++||+++.+++.|++.+......    ..-++++++.+|+.+++..  ....
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            567899999999999999998866679999999999999999887542100    0125799999999887763  2578


Q ss_pred             eeEEEEeCCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|.|++..++|+....  ...+...++++. +.++|+|||++++.+
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~-~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSE-YAYVLKEGGVVYTIT  173 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHH-HHHHcCCCCEEEEEe
Confidence            9999988777652100  013345789998 899999999998864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.21  E-value=2.8e-11  Score=108.09  Aligned_cols=103  Identities=20%  Similarity=0.328  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++..+..+++++|+++.+++.|++.+...      ++++++.+|+.+...  .++||+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~~--~~~fD~v~  114 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN------LKVKYIEADYSKYDF--EEKYDMVV  114 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC------TTEEEEESCTTTCCC--CSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC------CCEEEEeCchhccCC--CCCceEEE
Confidence            4678999999999999999999876789999999999999999987532      389999999876532  27899999


Q ss_pred             EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.       ++-.   .++++. +++.|+|||.+++..
T Consensus       115 ~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIH-------HLEDEDKKELYKR-SYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCccc-------cCCHHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            986421       2222   258898 899999999988754

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.21  E-value=2.2e-10  Score=100.98  Aligned_cols=132  Identities=12%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++..  .+|++||+++.+++.|++.+..      .++++++.+|+.++.  ..++||+|
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~--~~~~fD~v  118 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQFS--TAELFDLI  118 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTCC--CSCCEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhCC--CCCCccEE
Confidence            3456899999999999999999874  6899999999999999998753      258999999987765  35789999


Q ss_pred             EEeCCCCCCCCCCcCCch----HHHHHHHhccccCCCceEEEeCCCCC---cCCChhHHHHHHHHHhhhcCceeEEE
Q 019699          180 IGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~~p~---~~~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      ++...-.       ++-.    ..+++. +.+.|+|||++++....+.   .|........+.+.+.+.+..+....
T Consensus       119 ~~~~~l~-------~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  187 (216)
T 3ofk_A          119 VVAEVLY-------YLEDMTQMRTAIDN-MVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEVERVQ  187 (216)
T ss_dssp             EEESCGG-------GSSSHHHHHHHHHH-HHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEEEEE
T ss_pred             EEccHHH-------hCCCHHHHHHHHHH-HHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhhccceEEEe
Confidence            9985421       2221    367888 7999999999988431110   02222223455566666676655433

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.21  E-value=8.8e-11  Score=106.23  Aligned_cols=124  Identities=14%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhc-cCCCCCCCeEEEEccHHHH-HhhcCCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAE-LESRKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~d~rv~v~~~D~~~~-l~~~~~~y  176 (337)
                      ..+..+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++... .    .++++++.+|+.+. +.  .++|
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~~~~--~~~~  167 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ----VENVRFHLGKLEEAELE--EAAY  167 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEESCGGGCCCC--TTCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC----CCCEEEEECchhhcCCC--CCCc
Confidence            356679999999999999999987 45679999999999999999987643 2    46899999998775 32  3679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeE
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP  247 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~  247 (337)
                      |+|++|.++++           ++++. +.+.|+|||.+++...      ..+....+.+.+++. |..+..
T Consensus       168 D~v~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~gf~~~~~  221 (258)
T 2pwy_A          168 DGVALDLMEPW-----------KVLEK-AALALKPDRFLVAYLP------NITQVLELVRAAEAHPFRLERV  221 (258)
T ss_dssp             EEEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHTTTTEEEEEE
T ss_pred             CEEEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHHCCCceEEE
Confidence            99999875432           45676 7899999999988652      234456666777654 554443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.21  E-value=5.9e-11  Score=108.43  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++. +..+|++||+++.+++.|++.+....   -.++++++.+|+.++ ....++||+|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~i~  119 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSMDDL-PFRNEELDLIW  119 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcChhhC-CCCCCCEEEEE
Confidence            56789999999999999999998 56799999999999999999876432   246899999998653 22357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.       ++-...+++. +.+.|+|||.+++..
T Consensus       120 ~~~~~~-------~~~~~~~l~~-~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          120 SEGAIY-------NIGFERGLNE-WRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ESSCGG-------GTCHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EcCCce-------ecCHHHHHHH-HHHHcCCCCEEEEEE
Confidence            876422       2234678998 899999999998764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.20  E-value=9e-11  Score=105.51  Aligned_cols=125  Identities=12%  Similarity=0.104  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|+|+|.++..+++.  ..+++++|+++.+++.|++++....   -+++++++.+|..+.+. ..+.||+|+
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~-~~~~~D~v~  163 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN---LGKNVKFFNVDFKDAEV-PEGIFHAAF  163 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT---CCTTEEEECSCTTTSCC-CTTCBSEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC---CCCcEEEEEcChhhccc-CCCcccEEE
Confidence            45679999999999999999987  5799999999999999999875431   13689999999877541 235799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      ++.+++.           ++++. +.+.|+|||.+++...      ..+....+.+.+++.|..+..+.
T Consensus       164 ~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~f~~~~~~~  214 (248)
T 2yvl_A          164 VDVREPW-----------HYLEK-VHKSLMEGAPVGFLLP------TANQVIKLLESIENYFGNLEVVE  214 (248)
T ss_dssp             ECSSCGG-----------GGHHH-HHHHBCTTCEEEEEES------SHHHHHHHHHHSTTTEEEEEEEE
T ss_pred             ECCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhhCCcceEEE
Confidence            9865331           45666 7889999999988752      23455566667665566555443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.20  E-value=9.2e-11  Score=109.27  Aligned_cols=110  Identities=18%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..++++.+ .+|++||+++.+++.|++.+....   -..+++++.+|+.++    .++||+|+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  142 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWEEF----DEPVDRIV  142 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC---CSSCEEEEECCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECCHHHc----CCCccEEE
Confidence            4567999999999999999998754 789999999999999999876432   135899999999776    57899999


Q ss_pred             EeCCCCCCCCCC---cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~---~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.....|.   ..-.-..+++. +.+.|+|||.+++..
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHH-HHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            975421100110   01123578998 899999999999875

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.19  E-value=1.1e-10  Score=103.28  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-CCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.+||+||||+|.++..+++..+..++++||+++.+++.|++.+....-. ...++++++.+|+. .+....++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT-YQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT-SCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc-cccccCCCcCEE
Confidence            4678999999999999999999766679999999999999999987532100 01248999999973 333334789999


Q ss_pred             EEeCCCCCCCCCCcCCc---hHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~---t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-.       ++.   ...+++. +++.|+|||++++.
T Consensus       107 ~~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~li~~  140 (217)
T 3jwh_A          107 TVIEVIE-------HLDLSRLGAFERV-LFEFAQPKIVIVTT  140 (217)
T ss_dssp             EEESCGG-------GCCHHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred             eeHHHHH-------cCCHHHHHHHHHH-HHHHcCCCEEEEEc
Confidence            9875421       221   1478888 79999999988764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.19  E-value=9.8e-11  Score=108.02  Aligned_cols=125  Identities=14%  Similarity=0.155  Sum_probs=94.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhc-cCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+..+||++|||+|..+..+++. .+..+|+++|+++.+++.|++++... .    .++++++.+|+.+.+.  .++||
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~~~--~~~fD  181 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFIS--DQMYD  181 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCCC--SCCEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECchhccCc--CCCcc
Confidence            345679999999999999999986 55689999999999999999987543 2    3689999999887443  36799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                      +|++|.+++.           ++++. +.+.|+|||.+++...      .......+.+.+++. |..+..+
T Consensus       182 ~Vi~~~~~~~-----------~~l~~-~~~~LkpgG~l~i~~~------~~~~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          182 AVIADIPDPW-----------NHVQK-IASMMKPGSVATFYLP------NFDQSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             EEEECCSCGG-----------GSHHH-HHHTEEEEEEEEEEES------SHHHHHHHHHHSGGGTEEEEEEE
T ss_pred             EEEEcCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCeEEEEE
Confidence            9999765432           45677 7899999999988752      223445666667654 5544443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.18  E-value=4.4e-10  Score=102.72  Aligned_cols=135  Identities=14%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|||+|.++..+++.. . +|+++|+|+.+++.|++++..+.    -+ ++++.+|+.+.+.  .++||+|+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g-~-~v~gvDi~~~~v~~a~~n~~~~~----~~-v~~~~~d~~~~~~--~~~fD~Vv  189 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDIDPMVLPQAEANAKRNG----VR-PRFLEGSLEAALP--FGPFDLLV  189 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEESCGGGHHHHHHHHHHTT----CC-CEEEESCHHHHGG--GCCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC-C-eEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChhhcCc--CCCCCEEE
Confidence            567899999999999999988864 3 99999999999999999887542    12 8999999988653  36799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTW  259 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~  259 (337)
                      ++...       ..  -..+++. +.++|+|||.+++...      .......+.+.+++. |..+....      .+.|
T Consensus       190 ~n~~~-------~~--~~~~l~~-~~~~LkpgG~lils~~------~~~~~~~v~~~l~~~Gf~~~~~~~------~~~W  247 (254)
T 2nxc_A          190 ANLYA-------EL--HAALAPR-YREALVPGGRALLTGI------LKDRAPLVREAMAGAGFRPLEEAA------EGEW  247 (254)
T ss_dssp             EECCH-------HH--HHHHHHH-HHHHEEEEEEEEEEEE------EGGGHHHHHHHHHHTTCEEEEEEE------ETTE
T ss_pred             ECCcH-------HH--HHHHHHH-HHHHcCCCCEEEEEee------ccCCHHHHHHHHHHCCCEEEEEec------cCCe
Confidence            98531       11  2467888 7899999999987531      112345566677766 65544322      2457


Q ss_pred             EEEEEec
Q 019699          260 GWIMASD  266 (337)
Q Consensus       260 ~~~~as~  266 (337)
                      ..+++.|
T Consensus       248 ~~l~~~k  254 (254)
T 2nxc_A          248 VLLAYGR  254 (254)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7666543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.18  E-value=9.3e-11  Score=106.00  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..++++.+ .+|++||+++.+++.|++.+....   -.++++++.+|+.++ ....++||+|+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~  119 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN---CADRVKGITGSMDNL-PFQNEELDLIW  119 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECChhhC-CCCCCCEEEEE
Confidence            4567999999999999999999865 499999999999999999876432   135799999998543 22347899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..       +-...+++. +.+.|+|||.+++..
T Consensus       120 ~~~~l~~-------~~~~~~l~~-~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYN-------IGFERGMNE-WSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCC-------CCHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             ecChHhh-------cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            9865322       224678898 899999999988764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.17  E-value=1.2e-10  Score=107.28  Aligned_cols=107  Identities=18%  Similarity=0.284  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|.++..+++.  ..+|++||+++.+++.|++.+....   -.++++++.+|+.+......++||+|+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG---VSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C---CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            45789999999999999999987  4689999999999999999875431   136899999999887544568899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+    -...+++. ++++|+|||++++..
T Consensus       142 ~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          142 FHAVLEW--VA----DPRSVLQT-LWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ECchhhc--cc----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            9764221  11    12578898 899999999998864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.17  E-value=1.8e-10  Score=120.13  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +.++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..+.  +.+++++++.+|+.++++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng--l~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG--LTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--CCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            5789999999999999998885 45789999999999999999987653  33468999999999999877789999999


Q ss_pred             eCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCCC
Q 019699          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       182 D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      |++.-.........+     -.++++. +.++|+|||++++.+.+
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKD-LKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECC
Confidence            987311000000111     1356666 68999999999877654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=1.5e-09  Score=92.21  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=91.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||++|||+|.++..+++  +..+++++|+++.+++.|++.+....    -++++++.+|+.+.+..  ++||+|
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~--~~~D~i  104 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN----IKNCQIIKGRAEDVLDK--LEFNKA  104 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT----CCSEEEEESCHHHHGGG--CCCSEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEECCccccccC--CCCcEE
Confidence            35668999999999999999988  46899999999999999999876542    25799999999886554  689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      +++.. .         ...++++. +++.  |||.+++...      .......+.+.+++..-.+
T Consensus       105 ~~~~~-~---------~~~~~l~~-~~~~--~gG~l~~~~~------~~~~~~~~~~~l~~~g~~~  151 (183)
T 2yxd_A          105 FIGGT-K---------NIEKIIEI-LDKK--KINHIVANTI------VLENAAKIINEFESRGYNV  151 (183)
T ss_dssp             EECSC-S---------CHHHHHHH-HHHT--TCCEEEEEES------CHHHHHHHHHHHHHTTCEE
T ss_pred             EECCc-c---------cHHHHHHH-HhhC--CCCEEEEEec------ccccHHHHHHHHHHcCCeE
Confidence            99865 1         12467887 6666  9999988742      3345566777777764333

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.17  E-value=7.6e-11  Score=108.55  Aligned_cols=149  Identities=12%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-------CC-----CcEEEEEECCh--------------HHHHHHHhhhhh-cc---
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-------KT-----VEKVVMCDIDE--------------EVVEFCKSYLVV-NK---  150 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-------~~-----~~~v~~VEid~--------------~vi~~a~~~f~~-~~---  150 (337)
                      .++.+||+||+|+|..+..+++.       .+     ..+++.+|.+|              ++.+.|++.+.. +.   
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999987775542       33     25899999987              333455555431 00   


Q ss_pred             ----CCCCC--CCeEEEEccHHHHHhhcCC----ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          151 ----EAFSD--PRLELVINDARAELESRKE----SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       151 ----~~~~d--~rv~v~~~D~~~~l~~~~~----~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                          ..+++  .+++++.+|+++.+.....    .||+|++|++.|.. .|  .|++.+||+. +.++|+|||++++.+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p--~lw~~~~l~~-l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CG--GGCCHHHHHH-HHHHEEEEEEEEESCC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-Ch--hhcCHHHHHH-HHHHcCCCcEEEEEeC
Confidence                01233  3577999999999887543    79999999987652 33  7899999999 8999999999997542


Q ss_pred             CCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEecCC
Q 019699          221 PAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMASDSP  268 (337)
Q Consensus       221 ~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as~~p  268 (337)
                            ..    .+.+.|++. |. |    ..+|.+++-..++.|.+.+
T Consensus       215 ------a~----~vrr~L~~aGF~-v----~~~~g~~~kr~m~~a~~~~  248 (257)
T 2qy6_A          215 ------AG----FVRRGLQEAGFT-M----QKRKGFGRKREMLCGVMEQ  248 (257)
T ss_dssp             ------BH----HHHHHHHHHTEE-E----EEECCSTTCCCEEEEEEC-
T ss_pred             ------CH----HHHHHHHHCCCE-E----EeCCCCCCCCceEEEEecC
Confidence                  11    345666666 54 2    2356666556677787754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.17  E-value=3.2e-10  Score=99.78  Aligned_cols=99  Identities=21%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      ..+.+||+||||+|.++..++++  ..++++||+++.+++.|++.          ++++++..|..+....   ...+||
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhcccccccCCCcc
Confidence            45689999999999999999987  35899999999999999985          3567888998877322   235699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++...-.. ..      ...+++. ++++|+|||.+++..
T Consensus       119 ~v~~~~~l~~-~~------~~~~l~~-~~~~L~pgG~l~~~~  152 (227)
T 3e8s_A          119 LICANFALLH-QD------IIELLSA-MRTLLVPGGALVIQT  152 (227)
T ss_dssp             EEEEESCCCS-SC------CHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEEECchhhh-hh------HHHHHHH-HHHHhCCCeEEEEEe
Confidence            9999865321 11      2478888 899999999998865

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.17  E-value=1.1e-10  Score=107.72  Aligned_cols=124  Identities=19%  Similarity=0.257  Sum_probs=93.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++....   -.++++++.+|+.+.+.  .++||+
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~  184 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGFD--EKDVDA  184 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCCS--CCSEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHccc--CCccCE
Confidence            345679999999999999999987 456899999999999999999876431   12579999999987643  357999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~  246 (337)
                      |++|.++++           ++++. +.+.|+|||.+++...      ..+....+.+.+++. |..+.
T Consensus       185 V~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          185 LFLDVPDPW-----------NYIDK-CWEALKGGGRFATVCP------TTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             EEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHSSEEEEE
T ss_pred             EEECCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCceeE
Confidence            999875432           45666 7889999999988752      223445666666653 54433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.16  E-value=1.3e-10  Score=102.77  Aligned_cols=106  Identities=19%  Similarity=0.238  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|.++..+++..+  +++++|+++.+++.|++.+...     .++++++.+|..+. .-..++||+|+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~~D~v~  108 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYVI  108 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-----CCCceEEECchhcC-CCCCCcEEEEE
Confidence            4578999999999999999988753  8999999999999999987643     26899999998763 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  ..  .--..++++. +++.|+|||.+++..
T Consensus       109 ~~~~~~~--~~--~~~~~~~l~~-~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          109 FIDSIVH--FE--PLELNQVFKE-VRRVLKPSGKFIMYF  142 (227)
T ss_dssp             EESCGGG--CC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCchHh--CC--HHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            9854111  00  0112568888 799999999998764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.16  E-value=3.6e-10  Score=100.53  Aligned_cols=148  Identities=15%  Similarity=0.141  Sum_probs=92.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yDv  178 (337)
                      .++.+||+||||+|..+..+++..+..+|++||+++.+++.+.+....      .+++.++.+|+.....  ...++||+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  129 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchhhcccccceeE
Confidence            456799999999999999998875456999999999877654443221      1468888999865311  12378999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC--CCCcCCC-hhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGIFSH-TEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~--~p~~~~~-~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      |+++...+.        -...+++. +++.|+|||.+++...  +...... .+.++...+.+++.|..+...  ....|
T Consensus       130 V~~~~~~~~--------~~~~~l~~-~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~--~~~p~  198 (210)
T 1nt2_A          130 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG--SLMPY  198 (210)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE--ECTTT
T ss_pred             EEEeccChh--------HHHHHHHH-HHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEeeee--cCCCC
Confidence            999964321        12345787 7999999999887631  1100112 223333344566656554433  23334


Q ss_pred             CCceEEEEEe
Q 019699          256 ADTWGWIMAS  265 (337)
Q Consensus       256 ~~~~~~~~as  265 (337)
                      .....++++.
T Consensus       199 ~~~h~~~~~~  208 (210)
T 1nt2_A          199 HRDHIFIHAY  208 (210)
T ss_dssp             CTTEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            3334455554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.16  E-value=2.1e-10  Score=101.24  Aligned_cols=112  Identities=17%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             HHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH
Q 019699           88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (337)
Q Consensus        88 Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~  167 (337)
                      |.+++..+..   .++.+||+||||+|..+..+++.  ..+++++|+++.+++.+++.++        ++++++.+|+.+
T Consensus        34 ~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~  100 (220)
T 3hnr_A           34 YEDILEDVVN---KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLS  100 (220)
T ss_dssp             HHHHHHHHHH---TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSS
T ss_pred             HHHHHHHhhc---cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhh
Confidence            4454443332   46789999999999999999986  4689999999999999998753        478899999876


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.. . ++||+|++...-..  .+  ......+++. +++.|+|||.+++..
T Consensus       101 ~~~-~-~~fD~v~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          101 FEV-P-TSIDTIVSTYAFHH--LT--DDEKNVAIAK-YSQLLNKGGKIVFAD  145 (220)
T ss_dssp             CCC-C-SCCSEEEEESCGGG--SC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             cCC-C-CCeEEEEECcchhc--CC--hHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            532 2 78999999864221  11  1111348888 799999999998864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.16  E-value=3.5e-10  Score=104.53  Aligned_cols=116  Identities=15%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~  175 (337)
                      ..+..+||++|+|+|+.+..+++..+ ..+|+++|+++..++.+++++....    -++++++.+|+.++...   ..++
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~~  156 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG----VLNTIIINADMRKYKDYLLKNEIF  156 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC----CCcEEEEeCChHhcchhhhhcccc
Confidence            34567999999999999999988643 3799999999999999999876432    24899999999887543   2568


Q ss_pred             eeEEEEeCCCCCCCCCCc-------------CCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          176 YDVIIGDLADPIEGGPCY-------------KLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~-------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      ||+|++|++-... +...             .-...++++. +.+.|+|||.++..+.+
T Consensus       157 fD~Vl~d~Pcs~~-g~~~~~p~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          157 FDKILLDAPCSGN-IIKDKNRNVSEEDIKYCSLRQKELIDI-GIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEEEECCC-------------HHHHTGGGTCHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             CCEEEEcCCCCCC-cccccCCCCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEECC
Confidence            9999999763210 1000             0123678888 78999999999886543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.16  E-value=1.2e-10  Score=105.23  Aligned_cols=106  Identities=20%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+....   -.++++++.+|+.+...  .++||+|
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~V  107 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYVA--NEKCDVA  107 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCCC--SSCEEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECChHhCCc--CCCCCEE
Confidence            3566899999999999999999875 4689999999999999999875432   13589999999876532  5789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-..  .+    -...+++. +++.|+|||.+++.
T Consensus       108 ~~~~~~~~--~~----~~~~~l~~-~~r~LkpgG~l~~~  139 (256)
T 1nkv_A          108 ACVGATWI--AG----GFAGAEEL-LAQSLKPGGIMLIG  139 (256)
T ss_dssp             EEESCGGG--TS----SSHHHHHH-HTTSEEEEEEEEEE
T ss_pred             EECCChHh--cC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence            98543211  01    12578888 89999999998875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.15  E-value=2.8e-10  Score=102.01  Aligned_cols=150  Identities=16%  Similarity=0.138  Sum_probs=96.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~yD  177 (337)
                      ....+||+||||+|.++..++++. +..+|++||+++.+++.+.+....      .++++++.+|+.+.  +....++||
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK------RTNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH------CTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc------cCCeEEEEcccCChhhhcccCCcEE
Confidence            456799999999999999999873 457999999999877766665433      26899999999764  233357899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC--CcCCC-hhHHHHHHHHHhhh-cCceeEEEeecc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA--GIFSH-TEVFSCIYNTLRQV-FKYVVPYSAHIP  253 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p--~~~~~-~~~~~~i~~~l~~v-F~~v~~~~~~vP  253 (337)
                      +|++|.+.+.        ....+++. +.+.|+|||++++...+.  ..... ...+..-.+.|++. |..+...  .+.
T Consensus       150 ~V~~~~~~~~--------~~~~~~~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--~~~  218 (233)
T 2ipx_A          150 VIFADVAQPD--------QTRIVALN-AHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQL--TLE  218 (233)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEE--ECT
T ss_pred             EEEEcCCCcc--------HHHHHHHH-HHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEE--ecC
Confidence            9999876322        12356777 789999999998854210  00001 11122223455544 5443322  233


Q ss_pred             ccCCceEEEEEecC
Q 019699          254 SFADTWGWIMASDS  267 (337)
Q Consensus       254 ~~~~~~~~~~as~~  267 (337)
                      .|+....+++|.++
T Consensus       219 ~~~~~~~~v~~~~~  232 (233)
T 2ipx_A          219 PYERDHAVVVGVYR  232 (233)
T ss_dssp             TTSSSEEEEEEEEC
T ss_pred             CccCCcEEEEEEeC
Confidence            44444556777654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.15  E-value=1.8e-10  Score=101.62  Aligned_cols=151  Identities=13%  Similarity=-0.025  Sum_probs=102.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||+||||+|..+..+++.. +..++++||+++.+++.|++.+....    -++++++.+|+.++- ...++||+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~  109 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG----LKNVEVLKSEENKIP-LPDNTVDF  109 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECBTTBCS-SCSSCEEE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEecccccCC-CCCCCeeE
Confidence            3567899999999999999999874 55799999999999999999876532    248999999986542 23478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC-CcC-----CChhHHHHHHHHHhhh-cCceeEEEee
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA-GIF-----SHTEVFSCIYNTLRQV-FKYVVPYSAH  251 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p-~~~-----~~~~~~~~i~~~l~~v-F~~v~~~~~~  251 (337)
                      |++...-..  .+    ....+++. +.+.|+|||.+++....+ ...     ...-....+.+.+++. |..+..... 
T Consensus       110 v~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-  181 (219)
T 3dh0_A          110 IFMAFTFHE--LS----EPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-  181 (219)
T ss_dssp             EEEESCGGG--CS----SHHHHHHH-HHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-
T ss_pred             EEeehhhhh--cC----CHHHHHHH-HHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-
Confidence            999865221  11    12578898 799999999988753111 000     0011134555666665 665554332 


Q ss_pred             ccccCCceEEEEEecC
Q 019699          252 IPSFADTWGWIMASDS  267 (337)
Q Consensus       252 vP~~~~~~~~~~as~~  267 (337)
                          +..+.++++.|.
T Consensus       182 ----~~~~~~~~~~k~  193 (219)
T 3dh0_A          182 ----GKYCFGVYAMIV  193 (219)
T ss_dssp             ----TTTEEEEEEECC
T ss_pred             ----CCceEEEEEEec
Confidence                234556677764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.14  E-value=1.4e-10  Score=101.87  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=81.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||+||||+|..+..+++.  ..+|+++|+++.+++.|++.+....    -++++++.+|+.+.... .++||+
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~  146 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD----LHNVSTRHGDGWQGWQA-RAPFDA  146 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEE
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC----CCceEEEECCcccCCcc-CCCccE
Confidence            3456789999999999999999987  4799999999999999999886532    24799999999875543 478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++..-+.  .+          +. +.+.|+|||.+++..+
T Consensus       147 i~~~~~~~~--~~----------~~-~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          147 IIVTAAPPE--IP----------TA-LMTQLDEGGILVLPVG  175 (210)
T ss_dssp             EEESSBCSS--CC----------TH-HHHTEEEEEEEEEEEC
T ss_pred             EEEccchhh--hh----------HH-HHHhcccCcEEEEEEc
Confidence            999865332  11          13 5788999999998764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.14  E-value=2.4e-10  Score=108.34  Aligned_cols=123  Identities=12%  Similarity=0.215  Sum_probs=89.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhcc-----CCC--CCCCeEEEEccHHHHHhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAF--SDPRLELVINDARAELES  171 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~-----~~~--~d~rv~v~~~D~~~~l~~  171 (337)
                      ..++.+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++....     +.+  ..++++++.+|+.+.+..
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            356689999999999999999986 445799999999999999999876311     011  136899999999875422


Q ss_pred             -cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       172 -~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                       ..++||+|++|.++++           .+++. +.+.|+|||.+++...      ..+....+.+.+++
T Consensus       183 ~~~~~fD~V~~~~~~~~-----------~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~  234 (336)
T 2b25_A          183 IKSLTFDAVALDMLNPH-----------VTLPV-FYPHLKHGGVCAVYVV------NITQVIELLDGIRT  234 (336)
T ss_dssp             -----EEEEEECSSSTT-----------TTHHH-HGGGEEEEEEEEEEES------SHHHHHHHHHHHHH
T ss_pred             cCCCCeeEEEECCCCHH-----------HHHHH-HHHhcCCCcEEEEEeC------CHHHHHHHHHHHHh
Confidence             2357999999976543           14566 7899999999997642      34455566666665

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.2e-10  Score=106.52  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      .++.+||+||||+|..+..+++.. +..+|++||+++.+++.|++.+....  ...++++++.+|+.++-...     .+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP--DTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc--CCCCceEEEEcCHHhCCccccccccCC
Confidence            567899999999999999999753 67899999999999999999876431  12479999999987643221     26


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +||+|++...-.       ++.-..+++. ++++|+|||.+++
T Consensus       113 ~fD~V~~~~~l~-------~~~~~~~l~~-~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAH-------WFDFEKFQRS-AYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGG-------GSCHHHHHHH-HHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHH-------HhCHHHHHHH-HHHhcCCCcEEEE
Confidence            899999986432       2234678998 8999999999887

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.14  E-value=5.4e-10  Score=108.45  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|||+|.++..+++.  ..+|++||+|+.+++.|++++..+.     .+++++.+|+.+.... .++||+|+
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~D~~~~~~~-~~~fD~Ii  303 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANA-----LKAQALHSDVDEALTE-EARFDIIV  303 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTSCT-TCCEEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEcchhhcccc-CCCeEEEE
Confidence            35679999999999999999987  3599999999999999999987542     3489999999877543 47899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ++++-... .....-....+++. ++++|+|||.+++.....     .    .....+++.|..+...
T Consensus       304 ~npp~~~~-~~~~~~~~~~~l~~-~~~~LkpGG~l~iv~n~~-----l----~~~~~l~~~f~~v~~l  360 (381)
T 3dmg_A          304 TNPPFHVG-GAVILDVAQAFVNV-AAARLRPGGVFFLVSNPF-----L----KYEPLLEEKFGAFQTL  360 (381)
T ss_dssp             ECCCCCTT-CSSCCHHHHHHHHH-HHHHEEEEEEEEEEECTT-----S----CHHHHHHHHHSCCEEE
T ss_pred             ECCchhhc-ccccHHHHHHHHHH-HHHhcCcCcEEEEEEcCC-----C----ChHHHHHHhhccEEEE
Confidence            99864331 10011123578888 799999999998865322     1    1235667778877654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.13  E-value=7.6e-11  Score=109.03  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=93.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+..+||++|||+|.++..+++..+..+|++||+++.+++.|++++..+.    -++++++.+|+.++ .. .++||+|
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~----l~~~~~~~~d~~~~-~~-~~~~D~V  190 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK----LNNVIPILADNRDV-EL-KDVADRV  190 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT----CSSEEEEESCGGGC-CC-TTCEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEECChHHc-Cc-cCCceEE
Confidence            356689999999999999999987556799999999999999999987652    24689999999887 43 5789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      ++|++.    +      ..++++. +.+.|+|||++++...... ....+.+.+..+.+++.+
T Consensus       191 i~d~p~----~------~~~~l~~-~~~~LkpgG~l~~s~~~~~-~~~~~~~~~~~~~~~~~~  241 (272)
T 3a27_A          191 IMGYVH----K------THKFLDK-TFEFLKDRGVIHYHETVAE-KIMYERPIERLKFYAEKN  241 (272)
T ss_dssp             EECCCS----S------GGGGHHH-HHHHEEEEEEEEEEEEEEG-GGTTTHHHHHHHHHHHHT
T ss_pred             EECCcc----c------HHHHHHH-HHHHcCCCCEEEEEEcCcc-ccccccHHHHHHHHHHHh
Confidence            999753    1      1246676 6789999999987653210 111234556666666654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.13  E-value=6.6e-10  Score=108.05  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      ..+++||++|||+|+++..+++.. ..+|++||+++..++.|++++..+.  +.+++++++.+|+.+++...   ..+||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            467899999999999999999863 5799999999999999999987652  10238999999999987642   46899


Q ss_pred             EEEEeCCCCCCC--CCCcC-CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH-HHHhhh
Q 019699          178 VIIGDLADPIEG--GPCYK-LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQV  241 (337)
Q Consensus       178 vIi~D~~dp~~~--~p~~~-L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~-~~l~~v  241 (337)
                      +|++|++.....  ..... -.-.+++.. +.+.|+|||++++.+.+.  ....+.+..++ +.+.+.
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~--~~~~~~~~~~i~~~~~~~  360 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINML-AIQLLNEGGILLTFSCSG--LMTSDLFQKIIADAAIDA  360 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHH-HHHTEEEEEEEEEEECCT--TCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC--cCCHHHHHHHHHHHHHHc
Confidence            999998632100  00000 112467777 689999999998876543  22333333333 345544

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.13  E-value=5.3e-10  Score=108.25  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=87.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv  178 (337)
                      ..++||++|||+|+++..+++.  ..+|++||+++.+++.|++++..+.  +  ++++++.+|+.+++...   .++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~--~--~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG--L--GNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT--C--TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC--C--CCceEEECCHHHHHHHHHhcCCCeeE
Confidence            6679999999999999999987  5789999999999999999987653  2  34999999999987642   578999


Q ss_pred             EEEeCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCCCC
Q 019699          179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |++|++.-.. .+ ..+.     -.++++. +.+.|+|||++++...+.
T Consensus       283 Ii~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          283 VVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             EEECCCCCCC-Ch-hHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC
Confidence            9999863210 11 1111     1457777 789999999998876544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.13  E-value=1.7e-10  Score=104.89  Aligned_cols=105  Identities=19%  Similarity=0.275  Sum_probs=81.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|.++..+++..  .+|+++|+++.+++.|++.+....    -++++++.+|+.+. .-.+++||+|
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~l-~~~~~~fD~V  107 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM-PFTDERFHIV  107 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC-CSCTTCEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEecHHhC-CCCCCCEEEE
Confidence            4567899999999999999999875  499999999999999999875431    25799999998653 2234789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-.+  -+    -...+++. +++.|+|||.+++.
T Consensus       108 ~~~~~l~~--~~----d~~~~l~~-~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          108 TCRIAAHH--FP----NPASFVSE-AYRVLKKGGQLLLV  139 (260)
T ss_dssp             EEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEhhhhHh--cC----CHHHHHHH-HHHHcCCCCEEEEE
Confidence            99865222  11    12478888 89999999998875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.12  E-value=1.5e-10  Score=108.26  Aligned_cols=111  Identities=17%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHH-hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+++.+||+||||+|..+..++ +..+..+|++||+++.+++.|++.+....   ...+++++.+|+.+...  .++||+
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~  190 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA---LAGQITLHRQDAWKLDT--REGYDL  190 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEECCGGGCCC--CSCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECchhcCCc--cCCeEE
Confidence            3567899999999999999985 34456799999999999999999876432   13579999999887532  378999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++...-..  .+ ..-....+++. +.+.|+|||.+++..
T Consensus       191 v~~~~~~~~--~~-~~~~~~~~l~~-~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          191 LTSNGLNIY--EP-DDARVTELYRR-FWQALKPGGALVTSF  227 (305)
T ss_dssp             EECCSSGGG--CC-CHHHHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred             EEECChhhh--cC-CHHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            998653211  01 01112347898 799999999998764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.12  E-value=5.5e-11  Score=107.73  Aligned_cols=99  Identities=18%  Similarity=0.130  Sum_probs=78.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcC-C
Q 019699          102 NPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-E  174 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~-~  174 (337)
                      ++.+||+||||+|..+..+++.    .+..+|++||+++.+++.|+.   .      .++++++.+|+.++  +.... .
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~------~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D------MENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c------CCceEEEECcchhHHHHHhhccC
Confidence            4689999999999999999886    456899999999999988872   1      36899999999875  43333 3


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~  219 (337)
                      +||+|++|....         ....+++. +.+ +|+|||++++..
T Consensus       152 ~fD~I~~d~~~~---------~~~~~l~~-~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNAHA---------NTFNIMKW-AVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESSCS---------SHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCchH---------hHHHHHHH-HHHhhCCCCCEEEEEe
Confidence            799999997521         22467887 686 999999999863

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.12  E-value=2.6e-10  Score=110.12  Aligned_cols=99  Identities=19%  Similarity=0.288  Sum_probs=80.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi  180 (337)
                      ++++||+|| |+|.++.++++..+..+|++||+|+.+++.|++++...+  +  .+++++.+|+.+.+.. ..++||+|+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~--~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--Y--EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--C--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C--CCEEEEEChhhhhchhhccCCccEEE
Confidence            468999999 999999999887555799999999999999999987542  2  2899999999885543 346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG  213 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G  213 (337)
                      +|++-.    +. .  ..+|++. +.+.|+|||
T Consensus       247 ~~~p~~----~~-~--~~~~l~~-~~~~LkpgG  271 (373)
T 2qm3_A          247 TDPPET----LE-A--IRAFVGR-GIATLKGPR  271 (373)
T ss_dssp             ECCCSS----HH-H--HHHHHHH-HHHTBCSTT
T ss_pred             ECCCCc----hH-H--HHHHHHH-HHHHcccCC
Confidence            997532    11 2  2789998 799999999

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.12  E-value=1.4e-10  Score=106.12  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|.++..+++..+..++++||+++.+++.|++.+....    -++++++.+|+.+.. ...++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~  110 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG----IKNVKFLQANIFSLP-FEDSSFDHIF  110 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGCC-SCTTCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEcccccCC-CCCCCeeEEE
Confidence            56789999999999999999998767899999999999999999876532    257999999987642 2357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+    -...+++. +++.|+|||++++..
T Consensus       111 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFVLEH--LQ----SPEEALKS-LKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eechhhh--cC----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            9865322  11    12478888 899999999988753

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.12  E-value=4.8e-10  Score=98.50  Aligned_cols=146  Identities=14%  Similarity=0.089  Sum_probs=98.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|.++..+++.  ..++++||+++.+++.|++.+          +++++.+|....-  ..++||+|+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~--~~~~fD~v~  107 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD--AIDAYDAVW  107 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC--CCSCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC--CCCcEEEEE
Confidence            45789999999999999999986  358999999999999999875          3456778876543  468899999


Q ss_pred             EeCCCCCCCCCCcCC---chHHHHHHHhccccCCCceEEEeCCCCCcC--------CChhHHHHHHHHHhhh--cCceeE
Q 019699          181 GDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--------SHTEVFSCIYNTLRQV--FKYVVP  247 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~--------~~~~~~~~i~~~l~~v--F~~v~~  247 (337)
                      +...-.       ++   .-..+++. +++.|+|||.+++........        ...-....+.+.+++.  |..+..
T Consensus       108 ~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~  179 (211)
T 3e23_A          108 AHACLL-------HVPRDELADVLKL-IWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV  179 (211)
T ss_dssp             ECSCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred             ecCchh-------hcCHHHHHHHHHH-HHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence            875321       22   12468888 799999999998764211000        0001234555666655  776665


Q ss_pred             EEeeccccCC---ceEEEEEecCC
Q 019699          248 YSAHIPSFAD---TWGWIMASDSP  268 (337)
Q Consensus       248 ~~~~vP~~~~---~~~~~~as~~p  268 (337)
                      .......+.+   .|.+++..+.+
T Consensus       180 ~~~~~~~~~~~~~~wl~~~~~~~~  203 (211)
T 3e23_A          180 ESSEGKGFDQELAQFLHVSVRKPE  203 (211)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCC
T ss_pred             EeccCCCCCCCCceEEEEEEecCc
Confidence            5444444432   36666665544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.12  E-value=7.7e-10  Score=107.78  Aligned_cols=111  Identities=14%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++++||++|||+|+.+..+++. + .+|++||+++.+++.|++++..+.  +   ..++..+|+.+++....++||+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~-g-a~V~avDis~~al~~a~~n~~~ng--~---~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK-G-AYALAVDKDLEALGVLDQAALRLG--L---RVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHT--C---CCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc-C-CeEEEEECCHHHHHHHHHHHHHhC--C---CCcEEEccHHHHHHHhcCCCCEEEE
Confidence            4789999999999999999986 3 349999999999999999987653  1   1356799999998765555999999


Q ss_pred             eCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCCCC
Q 019699          182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       182 D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |++.-.. .. ..+.     -.++++. +.+.|+|||++++-+.++
T Consensus       287 dpP~f~~-~~-~~~~~~~~~~~~ll~~-a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          287 DPPTLVK-RP-EELPAMKRHLVDLVRE-ALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCCCS-SG-GGHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             CCCcCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC
Confidence            9863110 11 1111     1367777 689999999998655443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.12  E-value=3.3e-10  Score=104.01  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=93.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhc-cCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+..+||++|||+|.++..+++. .+..+|+++|+++.+++.|++++... ..  -.++++++.+|+.+.. ...+.||
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~--~~~~v~~~~~d~~~~~-~~~~~~D  173 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADSE-LPDGSVD  173 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGCC-CCTTCEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCCcEEEEECchHhcC-CCCCcee
Confidence            345679999999999999999985 34679999999999999999987542 10  1368999999987652 1246799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh--hcCcee
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VFKYVV  246 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~--vF~~v~  246 (337)
                      +|++|.++++           ++++. +.+.|+|||.+++...      ..+.+..+...+++  -|....
T Consensus       174 ~v~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~~~~f~~~~  226 (280)
T 1i9g_A          174 RAVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYVA------TVTQLSRIVEALRAKQCWTEPR  226 (280)
T ss_dssp             EEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHHSSBCCCE
T ss_pred             EEEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHhcCCcCCcE
Confidence            9999876442           45677 7899999999998752      23455666677765  354443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.12  E-value=3.2e-10  Score=95.41  Aligned_cols=142  Identities=18%  Similarity=0.264  Sum_probs=93.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-----h--hc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----E--SR  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-----~--~~  172 (337)
                      .++.+||++|||+|.++..++++ .+..+++++|+++ +++.              ++++++.+|..+.-     .  -.
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEcccccchhhhhhhccCC
Confidence            45679999999999999999987 3457999999999 5421              57899999987651     1  12


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCc-------hHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLY-------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~-------t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      .++||+|+++.+-.....  ....       ...+++. +.+.|+|||.+++....      ......+.+.+++.|..+
T Consensus        86 ~~~~D~i~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~~~~~  156 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGT--PAVDIPRAMYLVELALEM-CRDVLAPGGSFVVKVFQ------GEGFDEYLREIRSLFTKV  156 (180)
T ss_dssp             TCCEEEEEECCCCCCCSC--HHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEES------STTHHHHHHHHHHHEEEE
T ss_pred             CCceeEEEECCCccccCC--CccchHHHHHHHHHHHHH-HHHHcCCCcEEEEEEec------CCcHHHHHHHHHHhhhhE
Confidence            468999999876332111  0000       1578888 78999999999876421      122345667777778776


Q ss_pred             eEEEeeccccCCceEEEEEec
Q 019699          246 VPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       246 ~~~~~~vP~~~~~~~~~~as~  266 (337)
                      .............-.+++|.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~  177 (180)
T 1ej0_A          157 KVRKPDSSRARSREVYIVATG  177 (180)
T ss_dssp             EEECCTTSCTTCCEEEEEEEE
T ss_pred             EeecCCcccccCceEEEEEcc
Confidence            654322111112234566653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.11  E-value=1.1e-10  Score=113.08  Aligned_cols=135  Identities=17%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||++|||+|.++..+++..+..+|++||+|+.+++.|++++..+.. -+..+++++.+|+.+.+.  .++||+|+
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl-~~~~~v~~~~~D~~~~~~--~~~fD~Ii  297 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP-EALDRCEFMINNALSGVE--PFRFNAVL  297 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG-GGGGGEEEEECSTTTTCC--TTCEEEEE
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC-CcCceEEEEechhhccCC--CCCeeEEE
Confidence            345899999999999999999987778999999999999999998865421 012368889999987543  46899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      +|++-...... ..-...++++. +.++|+|||.+++-...     +...    ...+++.|..+....
T Consensus       298 ~nppfh~~~~~-~~~~~~~~l~~-~~~~LkpgG~l~iv~n~-----~~~~----~~~l~~~fg~~~~~a  355 (375)
T 4dcm_A          298 CNPPFHQQHAL-TDNVAWEMFHH-ARRCLKINGELYIVANR-----HLDY----FHKLKKIFGNCTTIA  355 (375)
T ss_dssp             ECCCC--------CCHHHHHHHH-HHHHEEEEEEEEEEEET-----TSCH----HHHHHHHHSCCEEEE
T ss_pred             ECCCcccCccc-CHHHHHHHHHH-HHHhCCCCcEEEEEEEC-----CcCH----HHHHHHhcCCEEEEe
Confidence            99864321011 11223478898 79999999998874321     1111    346777888776543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.11  E-value=3.4e-10  Score=97.91  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++.  ..+++++|+++.+++.+++.+....    -++++++.+|+.+.-.  .++||+|
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~--~~~~D~v  101 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDLNNLTF--DRQYDFI  101 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCGGGCCC--CCCEEEE
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcchhhCCC--CCCceEE
Confidence            456789999999999999999987  3589999999999999999876432    2479999999876432  5789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ++...-..  .+  .-....+++. +.+.|+|||.+++
T Consensus       102 ~~~~~l~~--~~--~~~~~~~l~~-~~~~L~~gG~l~~  134 (199)
T 2xvm_A          102 LSTVVLMF--LE--AKTIPGLIAN-MQRCTKPGGYNLI  134 (199)
T ss_dssp             EEESCGGG--SC--GGGHHHHHHH-HHHTEEEEEEEEE
T ss_pred             EEcchhhh--CC--HHHHHHHHHH-HHHhcCCCeEEEE
Confidence            98864221  11  0123578888 7999999998665

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.11  E-value=1.1e-10  Score=108.64  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=83.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.++||++|||.|.++..++++. ..+|+++|+||..++.++++...++  + ..+++++.+|++++..  .+.||.|+
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~--v-~~~v~~~~~D~~~~~~--~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--V-EDRMSAYNMDNRDFPG--ENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--C-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEeCcHHHhcc--ccCCCEEE
Confidence            567899999999999999999874 5789999999999999999988764  1 4689999999998864  36899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++++.          .+.+|+.. +.+.|++||++.+.
T Consensus       198 ~~~p~----------~~~~~l~~-a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          198 MGYVV----------RTHEFIPK-ALSIAKDGAIIHYH  224 (278)
T ss_dssp             ECCCS----------SGGGGHHH-HHHHEEEEEEEEEE
T ss_pred             ECCCC----------cHHHHHHH-HHHHcCCCCEEEEE
Confidence            99752          12367777 67899999998654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.11  E-value=1.5e-10  Score=107.90  Aligned_cols=112  Identities=17%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-----------------------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------------------------  152 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-----------------------------  152 (337)
                      .+++||+||||+|.++..++++.+..+|++||||+.+++.|++.+......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999876789999999999999999976421100                             


Q ss_pred             -----------C--------------CCCCeEEEEccHHHH----HhhcCCceeEEEEeCCCCCCCCCCcCC-----chH
Q 019699          153 -----------F--------------SDPRLELVINDARAE----LESRKESYDVIIGDLADPIEGGPCYKL-----YTK  198 (337)
Q Consensus       153 -----------~--------------~d~rv~v~~~D~~~~----l~~~~~~yDvIi~D~~dp~~~~p~~~L-----~t~  198 (337)
                                 +              --.+++++.+|....    +....++||+|++...-.+     .+|     .-.
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~-----ihl~~~~~~~~  200 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW-----VHLNWGDEGLK  200 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH-----HHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH-----hhhcCCHHHHH
Confidence                       0              004899999998632    2224578999999764211     011     235


Q ss_pred             HHHHHHhccccCCCceEEEeC
Q 019699          199 SFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       199 ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+++. +.++|+|||+|++..
T Consensus       201 ~~l~~-~~~~LkpGG~lil~~  220 (292)
T 3g07_A          201 RMFRR-IYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHH-HHHHEEEEEEEEEEC
T ss_pred             HHHHH-HHHHhCCCcEEEEec
Confidence            68888 799999999999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.10  E-value=1.2e-10  Score=105.22  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..+..+++++|+++.+++.+++.         .++++++.+|+.++.  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~d~~~~~--~~~~fD~v~  100 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---------LPNTNFGKADLATWK--PAQKADLLY  100 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---------STTSEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------CCCcEEEECChhhcC--ccCCcCEEE
Confidence            567899999999999999999875567899999999999999986         257899999987654  457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.+.  +    -...+++. +.+.|+|||.+++..
T Consensus       101 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          101 ANAVFQWV--P----DHLAVLSQ-LMDQLESGGVLAVQM  132 (259)
T ss_dssp             EESCGGGS--T----THHHHHHH-HGGGEEEEEEEEEEE
T ss_pred             EeCchhhC--C----CHHHHHHH-HHHhcCCCeEEEEEe
Confidence            97653221  1    13578888 899999999998875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.10  E-value=1.4e-10  Score=107.18  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||+||||+|..+..+++..+ ..+|++||+++.+++.|++.+...     .++++++.+|+.++..  +++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~~--~~~fD~   92 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEIEL--NDKYDI   92 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-----SSEEEEEESCTTTCCC--SSCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcchhhcCc--CCCeeE
Confidence            35678999999999999999998755 479999999999999999987643     2489999999987432  468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++...-..  .+    ....+++. +++.|+|||.+++..
T Consensus        93 v~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           93 AICHAFLLH--MT----TPETMLQK-MIHSVKKGGKIICFE  126 (284)
T ss_dssp             EEEESCGGG--CS----SHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEECChhhc--CC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            999875221  11    12578898 899999999998764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.09  E-value=5.8e-10  Score=108.39  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      ...++||++|||+|.++..+++. +..+|++||+++.+++.|++++..+.  + +++++++.+|+.+++..   ..++||
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~--~-~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG--V-EDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--C-GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--C-CccceEEECCHHHHHHHHHhhCCCCC
Confidence            36789999999999999999986 45799999999999999999987653  1 23899999999988754   257899


Q ss_pred             EEEEeCCCCCCCCCCcCC-----chHHHHHHHhccccCCCceEEEeCCCC
Q 019699          178 VIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +|++|++.-.. .. ..+     ...+++.. +.+.|+|||++++.+.++
T Consensus       292 ~Vi~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          292 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCC
Confidence            99999863210 11 111     12457777 789999999888765443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.09  E-value=9.8e-11  Score=103.29  Aligned_cols=109  Identities=11%  Similarity=0.024  Sum_probs=77.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc-----C---CCCCCCeEEEEccHHHHHh
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----E---AFSDPRLELVINDARAELE  170 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~-----~---~~~d~rv~v~~~D~~~~l~  170 (337)
                      ..+++.+||++|||+|..+..+++.  ..+|++||+++.+++.|++......     +   .+..++++++.+|+.+.-.
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~   96 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   96 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence            3457789999999999999999986  3589999999999999998753210     0   0013689999999876432


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCce
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI  214 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv  214 (337)
                      ...++||+|++...-..  -+  .-....+++. ++++|+|||.
T Consensus        97 ~~~~~fD~v~~~~~l~~--l~--~~~~~~~l~~-~~r~LkpgG~  135 (203)
T 1pjz_A           97 RDIGHCAAFYDRAAMIA--LP--ADMRERYVQH-LEALMPQACS  135 (203)
T ss_dssp             HHHHSEEEEEEESCGGG--SC--HHHHHHHHHH-HHHHSCSEEE
T ss_pred             ccCCCEEEEEECcchhh--CC--HHHHHHHHHH-HHHHcCCCcE
Confidence            11157999997543111  11  0012357888 7999999997

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.09  E-value=5.6e-10  Score=101.85  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+....   ..++++++.+|+.+. .-..++||+|
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v  133 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG---LANRVTFSYADAMDL-PFEDASFDAV  133 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECccccC-CCCCCCccEE
Confidence            3567899999999999999999865 4799999999999999999876432   135899999998653 2234789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+    -...+++. +++.|+|||.+++..
T Consensus       134 ~~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          134 WALESLHH--MP----DRGRALRE-MARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEESCTTT--SS----CHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             EEechhhh--CC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence            98754222  11    12578898 899999999988764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.08  E-value=2.8e-10  Score=102.83  Aligned_cols=103  Identities=20%  Similarity=0.206  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.       .++++++.+|+.+. ....++||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~v~  113 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI-AIEPDAYNVVL  113 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC-CCCTTCEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC-CCCCCCeEEEE
Confidence            467899999999999999999874 3499999999999999998764       46899999998653 22357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .    -....+++. +++.|+|||.+++..
T Consensus       114 ~~~~l~~--~----~~~~~~l~~-~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          114 SSLALHY--I----ASFDDICKK-VYINLKSSGSFIFSV  145 (253)
T ss_dssp             EESCGGG--C----SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Echhhhh--h----hhHHHHHHH-HHHHcCCCcEEEEEe
Confidence            9864221  0    013578888 899999999999875

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.08  E-value=2.5e-10  Score=101.88  Aligned_cols=100  Identities=13%  Similarity=0.156  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..++++.  .+|++||+++.+++.|++.++       . +++++.+|+.+..  .+++||+|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-------~-~v~~~~~d~~~~~--~~~~fD~v~  108 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK-------D-GITYIHSRFEDAQ--LPRRYDNIV  108 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC-------S-CEEEEESCGGGCC--CSSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh-------C-CeEEEEccHHHcC--cCCcccEEE
Confidence            466799999999999999998864  379999999999999998753       1 7999999988762  357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhc-cccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~-~~L~p~Gvlv~~~  219 (337)
                      +...-..  -+    -...+++. ++ ++|+|||.+++..
T Consensus       109 ~~~~l~~--~~----~~~~~l~~-~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          109 LTHVLEH--ID----DPVALLKR-INDDWLAEGGRLFLVC  141 (250)
T ss_dssp             EESCGGG--CS----SHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             EhhHHHh--hc----CHHHHHHH-HHHHhcCCCCEEEEEc
Confidence            8764211  11    12578898 89 9999999998865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.08  E-value=3e-10  Score=99.71  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+.+.+||+||||+|.++..+++.  ..+++++|+++.+++.|++.        ..++++++.+|+.++  ...++||+|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~~d~~~~--~~~~~~D~v  111 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH--------GLDNVEFRQQDLFDW--TPDRQWDAV  111 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG--------CCTTEEEEECCTTSC--CCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc--------CCCCeEEEecccccC--CCCCceeEE
Confidence            345679999999999999999987  36999999999999999981        136899999998776  345789999


Q ss_pred             EEeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-.       ++-.   ..+++. +++.|+|||.+++..
T Consensus       112 ~~~~~l~-------~~~~~~~~~~l~~-~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          112 FFAHWLA-------HVPDDRFEAFWES-VRSAVAPGGVVEFVD  146 (218)
T ss_dssp             EEESCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEechhh-------cCCHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9975421       2222   578888 799999999988765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.08  E-value=5.5e-10  Score=102.90  Aligned_cols=106  Identities=13%  Similarity=0.125  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++..+ .+|++||+++.+++.|++.+....   ..++++++.+|..++    +++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~----~~~fD~v~  134 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRIV  134 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC----CCCeeEEE
Confidence            4567999999999999999995544 499999999999999999875422   246899999998653    27899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  -+  .-....+++. +.+.|+|||.+++..
T Consensus       135 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEH--FG--HERYDAFFSL-AHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGG--TC--TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeCchhh--cC--hHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            8753111  00  0123578898 799999999998864

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.07  E-value=5.5e-10  Score=100.47  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=82.9

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||+||||+|.++..+++..  .++++||+++.+++.+++.+....    -++++++.+|+.+. ....++||+
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~   90 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAESL-PFPDDSFDI   90 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTBC-CSCTTCEEE
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEecccccC-CCCCCcEEE
Confidence            34667899999999999999998874  489999999999999999876432    25799999998653 333478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++...-..  -+    --..+++. ++++|+|||.+++..
T Consensus        91 v~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           91 ITCRYAAHH--FS----DVRKAVRE-VARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEECCchhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            999854221  01    12578888 799999999988753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.07  E-value=2.8e-10  Score=102.97  Aligned_cols=106  Identities=16%  Similarity=0.172  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.+...      ++++++.+|+.+. ....++||+|+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~  125 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN------NKIIFEANDILTK-EFPENNFDLIY  125 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC------TTEEEEECCTTTC-CCCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEECccccC-CCCCCcEEEEe
Confidence            456799999999999999999865 469999999999999999876431      7899999998764 22357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+  .-....+++. ++++|+|||.+++..
T Consensus       126 ~~~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          126 SRDAILA--LS--LENKNKLFQK-CYKWLKPTGTLLITD  159 (266)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             HHHHHHh--cC--hHHHHHHHHH-HHHHcCCCCEEEEEE
Confidence            9754211  00  0123578888 799999999988764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.07  E-value=1.2e-09  Score=108.41  Aligned_cols=136  Identities=12%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...++.+|||+|+|.|+.+..+++..+ ..+|+++|+++..++.+++++....    -. ++++.+|+.++.....++||
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G----~~-v~~~~~Da~~l~~~~~~~FD  172 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG----AP-LAVTQAPPRALAEAFGTYFH  172 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC----CC-CEEECSCHHHHHHHHCSCEE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----Ce-EEEEECCHHHhhhhccccCC
Confidence            345668999999999999999987643 4689999999999999999886542    23 89999999987654467899


Q ss_pred             EEEEeCCCCCC----CCCCcCC------------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          178 VIIGDLADPIE----GGPCYKL------------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       178 vIi~D~~dp~~----~~p~~~L------------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      +|++|++-...    ..|....            ...++++. +.+.|+|||.++..+.+.    .++.-..+++.+.+.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvysTCs~----~~eEne~vv~~~l~~  247 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQ-ASRLLGPGGVLVYSTCTF----APEENEGVVAHFLKA  247 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESCC----CGGGTHHHHHHHHHH
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeccC----chhcCHHHHHHHHHH
Confidence            99999873110    0111000            12678888 789999999998765432    223333444444444


Q ss_pred             cCc
Q 019699          242 FKY  244 (337)
Q Consensus       242 F~~  244 (337)
                      +|+
T Consensus       248 ~~~  250 (464)
T 3m6w_A          248 HPE  250 (464)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.07  E-value=4.9e-10  Score=97.74  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=79.5

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +.+||+||||+|..+..+++.  ..++++||+++.+++.|++.+         ++++++.+|+.++ ....++||+|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-SDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-GGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-ccCCCCeEEEEeh
Confidence            789999999999999999987  358999999999999999862         5789999998774 3345789999997


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..-..  .+  .-....+++. ++++|+|||.+++..
T Consensus       110 ~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A          110 YSLIH--MG--PGELPDALVA-LRMAVEDGGGLLMSF  141 (203)
T ss_dssp             SSSTT--CC--TTTHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             hhHhc--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            64221  11  0123578888 899999999988764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.06  E-value=1.3e-09  Score=102.89  Aligned_cols=116  Identities=16%  Similarity=0.073  Sum_probs=85.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+..+||++|||+|+.+..+++.. +..+|+++|+++..++.+++++....    -++++++.+|+.++.. ..++||
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~~~-~~~~fD  189 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGE-LNVEFD  189 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGG-GCCCEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCeEEEEECChhhccc-ccccCC
Confidence            33456799999999999999999864 34799999999999999999886432    2479999999987654 356899


Q ss_pred             EEEEeCCCCCCC----CCCc-CC-----------chHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEG----GPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~----~p~~-~L-----------~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++|++-....    .|.. ..           ...++++. +.+.|+|||.+++.+.
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~-~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTC  247 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEES
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeC
Confidence            999998621100    0100 00           01478888 7899999999987653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.06  E-value=4.3e-10  Score=102.31  Aligned_cols=98  Identities=14%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|.++..+++..  .+|++||+++.+++.|++.+         ++++++.+|+.++-.  .++||+|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v~  115 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN---------PDAVLHHGDMRDFSL--GRRFSAVT  115 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTCCC--SCCEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC---------CCCEEEECChHHCCc--cCCcCEEE
Confidence            567899999999999999999873  58999999999999999864         378999999877432  57899999


Q ss_pred             EeC-CCCCCCCCCcCC----chHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDL-ADPIEGGPCYKL----YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~-~dp~~~~p~~~L----~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.. .-       .++    ....+++. +++.|+|||.+++..
T Consensus       116 ~~~~~l-------~~~~~~~~~~~~l~~-~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          116 CMFSSI-------GHLAGQAELDAALER-FAAHVLPDGVVVVEP  151 (263)
T ss_dssp             ECTTGG-------GGSCHHHHHHHHHHH-HHHTEEEEEEEEECC
T ss_pred             EcCchh-------hhcCCHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            874 21       122    12467888 799999999999863

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.06  E-value=2e-10  Score=103.26  Aligned_cols=106  Identities=23%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.+....    ..+++++.+|+.++. ...++||+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC----CceEEEEEcChhhcC-CCCCCEEEEEE
Confidence            57899999999999999988865 5699999999999999999876431    247899999976543 23458999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +..-..  .+..  ....+++. +.++|+|||.+++.
T Consensus       153 ~~~l~~--~~~~--~~~~~l~~-~~~~LkpgG~l~i~  184 (241)
T 2ex4_A          153 QWVIGH--LTDQ--HLAEFLRR-CKGSLRPNGIIVIK  184 (241)
T ss_dssp             ESCGGG--SCHH--HHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cchhhh--CCHH--HHHHHHHH-HHHhcCCCeEEEEE
Confidence            854211  1100  01368888 79999999998874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.06  E-value=4e-10  Score=103.22  Aligned_cols=109  Identities=12%  Similarity=-0.030  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc--------cCC-----CCCCCeEEEEccHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEA-----FSDPRLELVINDARA  167 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~--------~~~-----~~d~rv~v~~~D~~~  167 (337)
                      ..+.+||++|||+|..+..+++.  ..+|++||+++.+++.|++.....        ...     -..++++++.+|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            46689999999999999999986  358999999999999998754310        000     024689999999887


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      .-....++||+|+....-..  -+.  -....+++. +.++|+|||+++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~--l~~--~~~~~~l~~-~~~~LkpGG~l~  188 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVA--INP--GDHDRYADI-ILSLLRKEFQYL  188 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTT--SCG--GGHHHHHHH-HHHTEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhh--CCH--HHHHHHHHH-HHHHcCCCeEEE
Confidence            54322378999997543211  111  113468888 799999999985

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.05  E-value=6.2e-10  Score=99.98  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      +++.+||+||||+|.++..+++.  ..+|++||+++.+++.|++.            ++++.+|+.+++.. ..++||+|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEE
Confidence            45689999999999999999886  35799999999999999863            68899999998744 35789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+  .-.-..+++. +++.|+|||.+++..
T Consensus       106 ~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          106 MISHFVEH--LD--PERLFELLSL-CYSKMKYSSYIVIES  140 (240)
T ss_dssp             EEESCGGG--SC--GGGHHHHHHH-HHHHBCTTCCEEEEE
T ss_pred             EECCchhh--CC--cHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            98754211  11  0012578898 899999999998875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.05  E-value=1.2e-09  Score=93.71  Aligned_cols=145  Identities=14%  Similarity=0.228  Sum_probs=95.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++.  ..+++++|+++.+++.+++.+         ++++++.+|..+. ....++||+|+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~~D~i~  112 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVD-QISETDFDLIV  112 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTS-CCCCCCEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccC-CCCCCceeEEE
Confidence            56789999999999999999987  368999999999999999864         3588999998763 22246899999


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEe-ecccc--
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSA-HIPSF--  255 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~-~vP~~--  255 (337)
                      +... -..  .+  .-....+++. +.+.|+|||.+++...... ...   ...+.+.+++. |..+..+.. ....+  
T Consensus       113 ~~~~~~~~--~~--~~~~~~~l~~-~~~~l~~~G~l~~~~~~~~-~~~---~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~  183 (195)
T 3cgg_A          113 SAGNVMGF--LA--EDGREPALAN-IHRALGADGRAVIGFGAGR-GWV---FGDFLEVAERVGLELENAFESWDLKPFVQ  183 (195)
T ss_dssp             ECCCCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEEETTS-SCC---HHHHHHHHHHHTEEEEEEESSTTCCBCCT
T ss_pred             ECCcHHhh--cC--hHHHHHHHHH-HHHHhCCCCEEEEEeCCCC-CcC---HHHHHHHHHHcCCEEeeeecccccCcCCC
Confidence            8732 111  00  0012578888 7999999999988653221 112   33444555544 554443322 11111  


Q ss_pred             CCceEEEEEec
Q 019699          256 ADTWGWIMASD  266 (337)
Q Consensus       256 ~~~~~~~~as~  266 (337)
                      ...+.++++.|
T Consensus       184 ~~~~~~~v~~k  194 (195)
T 3cgg_A          184 GSEFLVAVFTK  194 (195)
T ss_dssp             TCSEEEEEEEE
T ss_pred             CCcEEEEEEec
Confidence            23466666654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.05  E-value=9e-10  Score=96.57  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=91.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-----Hhh-c--
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LES-R--  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-----l~~-~--  172 (337)
                      .+..+||+||||+|+++..+++.  ..+|++||+++..               ..++++++.+|..+.     +.+ .  
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            45689999999999999999887  5799999999741               135899999997542     111 1  


Q ss_pred             --CCceeEEEEeCCCCCCCCCC--cCC----chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCc
Q 019699          173 --KESYDVIIGDLADPIEGGPC--YKL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY  244 (337)
Q Consensus       173 --~~~yDvIi~D~~dp~~~~p~--~~L----~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~  244 (337)
                        .++||+|++|..... .+..  ...    .....++. +.++|+|||.|++..     + ..+....+.+.+++.|..
T Consensus        87 ~~~~~~D~Vlsd~~~~~-~g~~~~d~~~~~~l~~~~l~~-a~~~LkpGG~lv~k~-----~-~~~~~~~~~~~l~~~F~~  158 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKV-SGIPSRDHAVSYQIGQRVMEI-AVRYLRNGGNVLLKQ-----F-QGDMTNDFIAIWRKNFSS  158 (191)
T ss_dssp             HTCSSEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE-----E-CSTHHHHHHHHHGGGEEE
T ss_pred             ccCCcceEEecCCCcCC-CCCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEE-----c-CCCCHHHHHHHHHHhcCE
Confidence              148999999985322 1110  000    01345665 689999999999764     1 222356778889999998


Q ss_pred             eeEEEeeccccCC-ceEEEEEec
Q 019699          245 VVPYSAHIPSFAD-TWGWIMASD  266 (337)
Q Consensus       245 v~~~~~~vP~~~~-~~~~~~as~  266 (337)
                      |..+. +..+-.. .=.|++|.+
T Consensus       159 v~~~k-P~asR~~s~E~y~v~~~  180 (191)
T 3dou_A          159 YKISK-PPASRGSSSEIYIMFFG  180 (191)
T ss_dssp             EEEEC-C------CCEEEEEEEE
T ss_pred             EEEEC-CCCccCCCceEEEEEee
Confidence            87654 1222222 234777765

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.05  E-value=2.3e-10  Score=102.78  Aligned_cols=103  Identities=13%  Similarity=0.049  Sum_probs=79.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+.+||++|||+|..+..+++..  .+|++||+++.+++.|++.+....   -.++++++.+|+.++..  .++||+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~--~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYG---IADKIEFICGDFLLLAS--FLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHGG--GCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcC---CCcCeEEEECChHHhcc--cCCCCEEEE
Confidence            67899999999999999999863  799999999999999999876532   12589999999998863  468999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +++-.....+..      .+.. ++++|+|||++++.
T Consensus       151 ~~~~~~~~~~~~------~~~~-~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          151 SPPWGGPDYATA------ETFD-IRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCCSSGGGGGS------SSBC-TTTSCSSCHHHHHH
T ss_pred             CCCcCCcchhhh------HHHH-HHhhcCCcceeHHH
Confidence            976322111111      2233 68899999987654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.04  E-value=5.1e-10  Score=103.19  Aligned_cols=104  Identities=17%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.  ..+|++||+++.+++.|++.+....     -+++++.+|+.+...  .++||+|+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~fD~i~  189 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKEN-----LNISTALYDINAANI--QENYDFIV  189 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCGGGCCC--CSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcC-----CceEEEEeccccccc--cCCccEEE
Confidence            36789999999999999999987  3589999999999999999876542     289999999877533  67899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  .+  .-....+++. +.++|+|||++++.
T Consensus       190 ~~~~~~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~  222 (286)
T 3m70_A          190 STVVFMF--LN--RERVPSIIKN-MKEHTNVGGYNLIV  222 (286)
T ss_dssp             ECSSGGG--SC--GGGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             Eccchhh--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            9864221  01  1123478888 79999999986653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.04  E-value=3.9e-10  Score=95.62  Aligned_cols=96  Identities=18%  Similarity=0.080  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++..  .+++++|+++.+++.+++.         .++++++.+|    +....++||+|+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------~~~v~~~~~d----~~~~~~~~D~v~   80 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---------FDSVITLSDP----KEIPDNSVDFIL   80 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---------CTTSEEESSG----GGSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---------CCCcEEEeCC----CCCCCCceEEEE
Confidence            566799999999999999999875  4999999999999999986         2589999999    333457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  .+    -...+++. +++.|+|||.+++.
T Consensus        81 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~  111 (170)
T 3i9f_A           81 FANSFHD--MD----DKQHVISE-VKRILKDDGRVIII  111 (170)
T ss_dssp             EESCSTT--CS----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Eccchhc--cc----CHHHHHHH-HHHhcCCCCEEEEE
Confidence            8865322  11    13578888 79999999988875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.04  E-value=3.3e-09  Score=96.22  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=102.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yD  177 (337)
                      .+..+||+||||+|.++..+++. .+..+|.+||+++++++.+++....      .+++..+.+|+...-.  .....+|
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~------~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD------RRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT------CTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh------hcCeeEEEEeccCccccccccceEE
Confidence            45689999999999999999986 4567999999999999999886532      3689999999865322  2347899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC--CCCCc-CCChhHHHHHHHHHhhh-cCceeEEEeecc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV-FKYVVPYSAHIP  253 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~--~~p~~-~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP  253 (337)
                      +|++|...|+  .      ...++++ +++.|+|||.+++-.  .+... ......+++..+.|++. |..+...  ...
T Consensus       150 vVf~d~~~~~--~------~~~~l~~-~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i--~L~  218 (233)
T 4df3_A          150 GLYADVAQPE--Q------AAIVVRN-ARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV--HLD  218 (233)
T ss_dssp             EEEECCCCTT--H------HHHHHHH-HHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE--ECT
T ss_pred             EEEEeccCCh--h------HHHHHHH-HHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE--ccC
Confidence            9999987553  1      2467888 799999999887642  11000 11235667777778765 6644332  334


Q ss_pred             ccCCceEEEEE
Q 019699          254 SFADTWGWIMA  264 (337)
Q Consensus       254 ~~~~~~~~~~a  264 (337)
                      .|.....+++|
T Consensus       219 pf~~~H~lv~~  229 (233)
T 4df3_A          219 PFDRDHAMIYA  229 (233)
T ss_dssp             TTSTTEEEEEE
T ss_pred             CCCCceEEEEE
Confidence            44433444554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.04  E-value=2.8e-09  Score=93.03  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||++|||+|.++..+++. +..+|++||+|+.+++.|++++.         +++++.+|+.++    +++||+|
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~----~~~~D~v  114 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI----SGKYDTW  114 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC----CCCEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC----CCCeeEE
Confidence            446789999999999999999887 45689999999999999998753         689999998773    3689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ++|++-...  .  .-....+++. +.+.|  |+++++
T Consensus       115 ~~~~p~~~~--~--~~~~~~~l~~-~~~~~--g~~~~~  145 (200)
T 1ne2_A          115 IMNPPFGSV--V--KHSDRAFIDK-AFETS--MWIYSI  145 (200)
T ss_dssp             EECCCC-----------CHHHHHH-HHHHE--EEEEEE
T ss_pred             EECCCchhc--c--CchhHHHHHH-HHHhc--CcEEEE
Confidence            999863321  1  1123578887 67777  555544

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.04  E-value=2.6e-09  Score=96.82  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=92.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yD  177 (337)
                      .+..+||++|||+|+.+..+++. .+..+|++||+++.+++...+....      .++++++.+|++....  ...++||
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhhccccceE
Confidence            45689999999999999988875 3456999999999886433322111      2579999999875321  2246899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCC---cCCChhHHHHHHHHHhhh-cCceeEEEeecc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQV-FKYVVPYSAHIP  253 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~---~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP  253 (337)
                      +|++|.+.+.        ...-+.+. +++.|+|||.+++..-+.+   .....+.++...+.|++. |..+..  ..+.
T Consensus       149 ~I~~d~a~~~--------~~~il~~~-~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~--~~l~  217 (232)
T 3id6_C          149 VLYVDIAQPD--------QTDIAIYN-AKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQI--INLD  217 (232)
T ss_dssp             EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEE--EECT
T ss_pred             EEEecCCChh--------HHHHHHHH-HHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEE--eccC
Confidence            9999976432        11223344 5668999999887532211   011223445666777764 443332  2344


Q ss_pred             ccCCceEEEEEec
Q 019699          254 SFADTWGWIMASD  266 (337)
Q Consensus       254 ~~~~~~~~~~as~  266 (337)
                      .|.....+++|.+
T Consensus       218 p~~~~h~~v~~~~  230 (232)
T 3id6_C          218 PYDKDHAIVLSKY  230 (232)
T ss_dssp             TTCSSCEEEEEEE
T ss_pred             CCcCceEEEEEEe
Confidence            4544455666654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.04  E-value=7.1e-10  Score=107.24  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..++++ +..+|++||++ .+++.|++.+..+.   -.++++++.+|+.++..  +++||+|+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~Iv  134 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN---LDHIVEVIEGSVEDISL--PEKVDVII  134 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT---CTTTEEEEESCGGGCCC--SSCEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC---CCCeEEEEECchhhcCc--CCcceEEE
Confidence            56789999999999999999987 45699999999 99999999876542   24679999999877532  37899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++.....  .. ..-.-..+++. +.+.|+|||+++..
T Consensus       135 ~~~~~~~--l~-~e~~~~~~l~~-~~~~LkpgG~li~~  168 (376)
T 3r0q_C          135 SEWMGYF--LL-RESMFDSVISA-RDRWLKPTGVMYPS  168 (376)
T ss_dssp             ECCCBTT--BT-TTCTHHHHHHH-HHHHEEEEEEEESS
T ss_pred             EcChhhc--cc-chHHHHHHHHH-HHhhCCCCeEEEEe
Confidence            9864221  00 11123457787 78999999999754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.03  E-value=3.8e-10  Score=98.66  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++... .+++++|+++.+++.|++.+..      .++++++.+|+.+. .-..++||+|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~v~  112 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-DFPSASFDVVL  112 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-CCCCCcccEEE
Confidence            5678999999999999999998743 4899999999999999997642      36899999998764 22346899999


Q ss_pred             EeCCC---------CCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLAD---------PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~d---------p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-         ++...+...-....+++. +.++|+|||.+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSE-VSRVLVPGGRFISMT  159 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECcchhhhccccccccccccchhHHHHHHHHH-HHHhCcCCCEEEEEe
Confidence            86531         110000000012578888 799999999998875

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.03  E-value=6.6e-10  Score=100.31  Aligned_cols=124  Identities=11%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++..+|||||||+|.++..+++..+..+|++||+|+..++.|+++...+.  + +.+++++.+|+.+-+... ++||+|+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l-~~~i~~~~~d~l~~l~~~-~~~D~Iv   89 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--L-KEKIQVRLANGLAAFEET-DQVSVIT   89 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--C-TTTEEEEECSGGGGCCGG-GCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CceEEEEECchhhhcccC-cCCCEEE
Confidence            45679999999999999999998767899999999999999999987653  1 358999999998766431 3699998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYV  245 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v  245 (337)
                      +..       ....+ -.+++.. +.+.|+++|.+++|..     ..   ...+.+.|.+. |..+
T Consensus        90 iaG-------~Gg~~-i~~Il~~-~~~~L~~~~~lVlq~~-----~~---~~~vr~~L~~~Gf~i~  138 (225)
T 3kr9_A           90 IAG-------MGGRL-IARILEE-GLGKLANVERLILQPN-----NR---EDDLRIWLQDHGFQIV  138 (225)
T ss_dssp             EEE-------ECHHH-HHHHHHH-TGGGCTTCCEEEEEES-----SC---HHHHHHHHHHTTEEEE
T ss_pred             EcC-------CChHH-HHHHHHH-HHHHhCCCCEEEEECC-----CC---HHHHHHHHHHCCCEEE
Confidence            742       11122 3578888 7899999999999852     12   23445566554 5543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.03  E-value=4.6e-10  Score=100.37  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=80.7

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++.+||+||||+|..+..+++.  ..+|++||+++.+++.|++.+....   ...+++++.+|+.++.  ..++||+|++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~v~~  138 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR--PTELFDLIFD  138 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC--CSSCEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC--CCCCeeEEEE
Confidence            4569999999999999998763  4789999999999999999875421   1357999999988754  3458999998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ...-..  .+  .-....+++. +++.|+|||.+++.
T Consensus       139 ~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~  170 (235)
T 3lcc_A          139 YVFFCA--IE--PEMRPAWAKS-MYELLKPDGELITL  170 (235)
T ss_dssp             ESSTTT--SC--GGGHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Chhhhc--CC--HHHHHHHHHH-HHHHCCCCcEEEEE
Confidence            754222  11  1123578888 79999999998864

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.03  E-value=2.2e-10  Score=102.39  Aligned_cols=92  Identities=15%  Similarity=0.298  Sum_probs=74.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI  179 (337)
                      +++.+||+||||+|.++..++++  ..+|+++|+++.+++.|++.         .++++++.+|+.+.+... .++||+|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN---------APHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH---------CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---------CCCceEEEcchhhccCCcCCCCEEEE
Confidence            56789999999999999999987  36999999999999999986         257899999986555444 5789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      ++.. +     +.      .+++. +.+.|+|||.++
T Consensus       116 ~~~~-~-----~~------~~l~~-~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSRR-G-----PT------SVILR-LPELAAPDAHFL  139 (226)
T ss_dssp             EEES-C-----CS------GGGGG-HHHHEEEEEEEE
T ss_pred             EeCC-C-----HH------HHHHH-HHHHcCCCcEEE
Confidence            9982 1     11      23445 688999999998

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.03  E-value=6.4e-10  Score=106.33  Aligned_cols=113  Identities=17%  Similarity=0.121  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ....+||++|||+|+++.+++... +..+|+++|+|+.+++.|++++....  +  ++++++.+|+.++... .+.||+|
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g--~--~~i~~~~~D~~~~~~~-~~~~D~I  276 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG--L--SWIRFLRADARHLPRF-FPEVDRI  276 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT--C--TTCEEEECCGGGGGGT-CCCCSEE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC--C--CceEEEeCChhhCccc-cCCCCEE
Confidence            456799999999999999999864 56789999999999999999986542  1  2899999999886433 3569999


Q ss_pred             EEeCCCCCCCCCCcCC--chHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKL--YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L--~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++|++.....+....+  .-.++++. +++.|+|||.+++-+
T Consensus       277 i~npPyg~r~~~~~~~~~~~~~~~~~-~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          277 LANPPHGLRLGRKEGLFHLYWDFLRG-ALALLPPGGRVALLT  317 (354)
T ss_dssp             EECCCSCC----CHHHHHHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             EECCCCcCccCCcccHHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            9998744321111111  11567887 799999999988864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.03  E-value=7.4e-10  Score=96.42  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=90.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH---------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---------  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l---------  169 (337)
                      .+..+||+||||+|.++..++++.+  ..+|++||+++..               ..++++++.+|..+..         
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------------CCCCceEEEccccchhhhhhccccc
Confidence            4567999999999999999998765  5799999999931               1256888888876532         


Q ss_pred             -------------h--hcCCceeEEEEeCCCCCCCCCC-cCCc-----hHHHHHHHhccccCCCceEEEeCCCCCcCCCh
Q 019699          170 -------------E--SRKESYDVIIGDLADPIEGGPC-YKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT  228 (337)
Q Consensus       170 -------------~--~~~~~yDvIi~D~~dp~~~~p~-~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~  228 (337)
                                   .  -...+||+|++|..-++. +.. ....     ....++. +.+.|+|||.+++....      .
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~-g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~------~  157 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI-GNKIDDHLNSCELTLSITHF-MEQYINIGGTYIVKMYL------G  157 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCC-SCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEEC------S
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCC-CCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEeC------C
Confidence                         0  123689999999753321 110 0000     1236777 78999999999885421      1


Q ss_pred             hHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEec
Q 019699          229 EVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       229 ~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      +....+...++..|..+..+..........-.|++|.+
T Consensus       158 ~~~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~  195 (201)
T 2plw_A          158 SQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKN  195 (201)
T ss_dssp             TTHHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHheEEEECCcccCCcCceEEEEEec
Confidence            22445667778788776543211111012234677765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.02  E-value=1.2e-09  Score=102.35  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.+....   .+++++++.+|..++    +++||+|+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~  160 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV  160 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChHHC----CCCcCEEE
Confidence            456799999999999999999874 3599999999999999999875431   136799999998654    37899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+  .-....+++. +.+.|+|||.+++..
T Consensus       161 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          161 SIEAFEH--FG--HENYDDFFKR-CFNIMPADGRMTVQS  194 (318)
T ss_dssp             EESCGGG--TC--GGGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             EeChHHh--cC--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence            8754211  00  0123578888 799999999998865

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.02  E-value=4.9e-10  Score=108.40  Aligned_cols=111  Identities=14%  Similarity=0.165  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhcc----CCCCCCCeEEEEccHHHHH-----h
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNK----EAFSDPRLELVINDARAEL-----E  170 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~----~~~~d~rv~v~~~D~~~~l-----~  170 (337)
                      .++.+||+||||+|..+..+++.. +..+|++||+++.+++.|++++....    +.+..++++++.+|+.+..     .
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999998863 45799999999999999999875321    1133579999999987652     1


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      -..++||+|++...-..  .+    -...+++. ++++|+|||.+++.
T Consensus       162 ~~~~~fD~V~~~~~l~~--~~----d~~~~l~~-~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNL--ST----NKLALFKE-IHRVLRDGGELYFS  202 (383)
T ss_dssp             CCTTCEEEEEEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhc--CC----CHHHHHHH-HHHHcCCCCEEEEE
Confidence            22468999999875322  11    13578898 89999999998875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=9.8e-10  Score=100.99  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++  +..+|+++|+++.+++.+++.+         ++++++.+|+.++-  ..++||+|
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v  121 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNFR--VDKPLDAV  121 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTCC--CSSCEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhCC--cCCCcCEE
Confidence            35678999999999999999998  3579999999999999998864         56889999987632  24789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-.+.  +    -...+++. +++.|+|||.+++..
T Consensus       122 ~~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          122 FSNAMLHWV--K----EPEAAIAS-IHQALKSGGRFVAEF  154 (279)
T ss_dssp             EEESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcchhhhC--c----CHHHHHHH-HHHhcCCCcEEEEEe
Confidence            987642220  1    12478888 799999999998865

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.02  E-value=7.8e-10  Score=105.84  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..+++. +..+|++||+++ +++.|++....+.   -.++++++.+|+.+. .-..++||+|+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC---CCCcEEEEECcHHHc-cCCCCceEEEE
Confidence            35689999999999999999987 567999999995 9999999876542   245799999998775 22247899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++.....  .. ..-....+++. +.+.|+|||+++..
T Consensus       139 s~~~~~~--l~-~~~~~~~~l~~-~~r~LkpgG~li~~  172 (349)
T 3q7e_A          139 SEWMGYC--LF-YESMLNTVLHA-RDKWLAPDGLIFPD  172 (349)
T ss_dssp             ECCCBBT--BT-BTCCHHHHHHH-HHHHEEEEEEEESC
T ss_pred             Ecccccc--cc-CchhHHHHHHH-HHHhCCCCCEEccc
Confidence            9864211  00 11123467777 78999999998744

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.02  E-value=1.1e-09  Score=97.69  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.. ..++++||+++.+++.|++.+.       .++++++.+|+.+.. ...++||+|+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~-~~~~~fD~v~  112 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGP-------DTGITYERADLDKLH-LPQDSFDLAY  112 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSC-------SSSEEEEECCGGGCC-CCTTCEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcc-------cCCceEEEcChhhcc-CCCCCceEEE
Confidence            467899999999999999999873 3499999999999999998753       247999999987642 2357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+    -...+++. ++++|+|||.+++..
T Consensus       113 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          113 SSLALHY--VE----DVARLFRT-VHQALSPGGHFVFST  144 (243)
T ss_dssp             EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eeccccc--cc----hHHHHHHH-HHHhcCcCcEEEEEe
Confidence            8764211  11    13578888 799999999998864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.02  E-value=1e-08  Score=89.68  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||++|||+|.++..+++. +..+|++||+|+.+++.|++.+....     -+++++.+|+.++    +.+||+|+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~----~~~~D~v~  117 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-----GKFKVFIGDVSEF----NSRVDIVI  117 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-----TSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECchHHc----CCCCCEEE
Confidence            45689999999999999999887 34689999999999999999876542     2799999998774    35899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      +|++-...    ..-....+++. +.+.|  +|+++....      .......+.+.+.+.
T Consensus       118 ~~~p~~~~----~~~~~~~~l~~-~~~~l--~~~~~~~~~------~~~~~~~~~~~l~~~  165 (207)
T 1wy7_A          118 MNPPFGSQ----RKHADRPFLLK-AFEIS--DVVYSIHLA------KPEVRRFIEKFSWEH  165 (207)
T ss_dssp             ECCCCSSS----STTTTHHHHHH-HHHHC--SEEEEEEEC------CHHHHHHHHHHHHHT
T ss_pred             EcCCCccc----cCCchHHHHHH-HHHhc--CcEEEEEeC------CcCCHHHHHHHHHHC
Confidence            99874321    11223577887 67777  677765521      233344444555543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.02  E-value=7.2e-10  Score=105.66  Aligned_cols=127  Identities=19%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+.+||+||||+|.++..+++..+..+|++||+++.+++.|++.+..+     +.+.+++.+|...+.   .++||+|++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~~d~~~~~---~~~fD~Iv~  267 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN-----GVEGEVFASNVFSEV---KGRFDMIIS  267 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT-----TCCCEEEECSTTTTC---CSCEEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCEEEEccccccc---cCCeeEEEE
Confidence            467999999999999999998866669999999999999999988654     234678999987654   468999999


Q ss_pred             eCCCCCCCCCCc-CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          182 DLADPIEGGPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       182 D~~dp~~~~p~~-~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      +.+-..  +... .-....+++. +.++|+|||.+++-....   ..      ....+...|..+...
T Consensus       268 ~~~~~~--g~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~~~~---~~------~~~~l~~~f~~~~~~  323 (343)
T 2pjd_A          268 NPPFHD--GMQTSLDAAQTLIRG-AVRHLNSGGELRIVANAF---LP------YPDVLDETFGFHEVI  323 (343)
T ss_dssp             CCCCCS--SSHHHHHHHHHHHHH-HGGGEEEEEEEEEEEETT---SS------HHHHHHHHHSCCEEE
T ss_pred             CCCccc--CccCCHHHHHHHHHH-HHHhCCCCcEEEEEEcCC---CC------cHHHHHHhcCceEEE
Confidence            976332  1100 0113578898 899999999988754221   11      124566667766543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.02  E-value=9.3e-10  Score=98.25  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +...+||+||||+|..+..+++.   .++++||+++.+++.|++.+...     .++++++.+|+.++-  ..++||+|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~  101 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET-----NRHVDFWVQDMRELE--LPEPVDAIT  101 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCGGGCC--CSSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc-----CCceEEEEcChhhcC--CCCCcCEEE
Confidence            44589999999999999998876   68999999999999999987643     257999999987642  237899999


Q ss_pred             EeC--CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDL--ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~--~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +..  ....   + ..-....+++. +.++|+|||.+++..
T Consensus       102 ~~~~~~~~~---~-~~~~~~~~l~~-~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          102 ILCDSLNYL---Q-TEADVKQTFDS-AARLLTDGGKLLFDV  137 (243)
T ss_dssp             ECTTGGGGC---C-SHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCCchhhc---C-CHHHHHHHHHH-HHHhcCCCeEEEEEc
Confidence            864  1111   0 00112467888 799999999999865

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.02  E-value=7.3e-10  Score=103.80  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..+++.. ..+|++||+++.+++.|++.+....   -.++++++.+|+.+. .-..++||+|+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~  190 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR---IDDHVRSRVCNMLDT-PFDKGAVTASW  190 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhcC-CCCCCCEeEEE
Confidence            456899999999999999999874 3689999999999999999876432   135899999998653 22347899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.       ++-...+++. +.++|+|||.+++..
T Consensus       191 ~~~~l~-------~~~~~~~l~~-~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTM-------YVDLHDLFSE-HSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGG-------GSCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchh-------hCCHHHHHHH-HHHHcCCCcEEEEEE
Confidence            865422       2225688998 899999999988754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.02  E-value=1.9e-09  Score=106.85  Aligned_cols=118  Identities=8%  Similarity=0.015  Sum_probs=87.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...++.+|||+|+|.|+.+..+++. .+..+|+++|+++..++.+++++....    -.+++++.+|+.++.....++||
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g----~~nv~v~~~Da~~l~~~~~~~FD  177 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG----VSNAIVTNHAPAELVPHFSGFFD  177 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT----CSSEEEECCCHHHHHHHHTTCEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhhhccccCC
Confidence            3455689999999999999998875 334689999999999999999886542    24699999999988654567899


Q ss_pred             EEEEeCCC-CCC---CCCC-------cC-----CchHHHHHHHhccccCCCceEEEeCCC
Q 019699          178 VIIGDLAD-PIE---GGPC-------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       178 vIi~D~~d-p~~---~~p~-------~~-----L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +|++|++- ...   ..|.       ..     -...++++. +.+.|+|||.++..+.+
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS-AIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHH-HHHTEEEEEEEEEEESC
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEEee
Confidence            99999862 110   0010       00     012367887 78999999999876543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.01  E-value=7.7e-10  Score=104.27  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||+||||+|.++..++++.+ ..+|++||+++++++.|++.+....    -++++++.+|+.+.+.. .++||+
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~  147 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVPE-FSPYDV  147 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEECChhhcccc-CCCeEE
Confidence            35668999999999999999998754 3679999999999999999876432    24599999999875542 367999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++..-+.       +.     +. +.+.|+|||++++..+
T Consensus       148 Iv~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          148 IFVTVGVDE-------VP-----ET-WFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             EEECSBBSC-------CC-----HH-HHHHEEEEEEEEEEBC
T ss_pred             EEEcCCHHH-------HH-----HH-HHHhcCCCcEEEEEEC
Confidence            999975322       21     34 5788999999999864

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.01  E-value=1.2e-09  Score=98.43  Aligned_cols=106  Identities=14%  Similarity=0.206  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++.. ..+|++||+++.+++.|++.+..      .++++++.+|+.+. ....++||+|+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~-~~~~~~fD~v~  163 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETA-TLPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEccHHHC-CCCCCCeEEEE
Confidence            467899999999999999988764 56899999999999999997643      26799999998763 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++..
T Consensus       164 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          164 IQWTAIY--LT--DADFVKFFKH-CQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Ecchhhh--CC--HHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            8754211  00  0012578888 799999999988754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.01  E-value=7.7e-10  Score=98.68  Aligned_cols=106  Identities=13%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++.  ..+++++|+++.+++.|++.+...     ..+++++.+|..++..  .++||+|+
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~~--~~~fD~v~  106 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNLNI--NRKFDLIT  106 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGCCC--SCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc-----CCCeEEEecccccCCc--cCCceEEE
Confidence            46789999999999999999987  368999999999999999987643     2379999999876432  37899999


Q ss_pred             EeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.. .-+.  .+ ..-....+++. ++++|+|||.+++..
T Consensus       107 ~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          107 CCLDSTNY--II-DSDDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             ECTTGGGG--CC-SHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             EcCccccc--cC-CHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence            864 2111  00 00123578888 799999999999865

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.01  E-value=9.7e-10  Score=106.57  Aligned_cols=104  Identities=19%  Similarity=0.226  Sum_probs=85.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-------------CCCCCCeEEEEccHHHH
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-------------AFSDPRLELVINDARAE  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-------------~~~d~rv~v~~~D~~~~  168 (337)
                      ++.+|||+|+|+|..+.++++..+..+|+++|+|+..++.++++...+..             .+  .+++++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence            67899999999999999999875557899999999999999999876510             12  2399999999999


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +....++||+|++|++.     .     ..+|++. +.+.|+++|++++.
T Consensus       125 ~~~~~~~fD~I~lDP~~-----~-----~~~~l~~-a~~~lk~gG~l~vt  163 (378)
T 2dul_A          125 MAERHRYFHFIDLDPFG-----S-----PMEFLDT-ALRSAKRRGILGVT  163 (378)
T ss_dssp             HHHSTTCEEEEEECCSS-----C-----CHHHHHH-HHHHEEEEEEEEEE
T ss_pred             HHhccCCCCEEEeCCCC-----C-----HHHHHHH-HHHhcCCCCEEEEE
Confidence            87666789999999751     1     1478887 78899999988765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.01  E-value=3.4e-10  Score=105.26  Aligned_cols=110  Identities=16%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|..+..+++.  ..+|++||+++.+++.|++.+...... ...+++++.+|+.++-  ..++||+|+
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~fD~v~  155 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMSAFA--LDKRFGTVV  155 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTTBCC--CSCCEEEEE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchhcCC--cCCCcCEEE
Confidence            45569999999999999999987  368999999999999999987642100 0158999999987742  257899988


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +... -..  .+  .-....+++. +++.|+|||.+++...
T Consensus       156 ~~~~~~~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          156 ISSGSINE--LD--EADRRGLYAS-VREHLEPGGKFLLSLA  191 (299)
T ss_dssp             ECHHHHTT--SC--HHHHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred             ECCccccc--CC--HHHHHHHHHH-HHHHcCCCcEEEEEee
Confidence            6422 111  00  0012578888 7999999999998753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.01  E-value=1e-09  Score=99.24  Aligned_cols=104  Identities=19%  Similarity=0.181  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++.  ..+|+++|+++.+++.|++.+..     ..++++++.+|+.+. .-..++||+|+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~-~~~~~~fD~v~  109 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAG-----VDRKVQVVQADARAI-PLPDESVHGVI  109 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTT-----SCTTEEEEESCTTSC-CSCTTCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhc-----cCCceEEEEcccccC-CCCCCCeeEEE
Confidence            56789999999999999999986  46899999999999999998721     247899999998653 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-.+  .+    -...+++. +.++|+|||.+++..
T Consensus       110 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          110 VVHLWHL--VP----DWPKVLAE-AIRVLKPGGALLEGW  141 (263)
T ss_dssp             EESCGGG--CT----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECCchhh--cC----CHHHHHHH-HHHHCCCCcEEEEEe
Confidence            9764222  11    13578888 799999999988764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.00  E-value=1.1e-09  Score=97.80  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..++++  ..+|++||+++.+++.+++..       ..++++++.+|+.+. ....++||+|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~-~~~~~~fD~v~  121 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG-------EGPDLSFIKGDLSSL-PFENEQFEAIM  121 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT-------CBTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc-------ccCCceEEEcchhcC-CCCCCCccEEE
Confidence            56789999999999999999987  358999999999999999864       247899999998754 22357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+    -...+++. +.+.|+|||.+++..
T Consensus       122 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          122 AINSLEW--TE----EPLRALNE-IKRVLKSDGYACIAI  153 (242)
T ss_dssp             EESCTTS--SS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChHhh--cc----CHHHHHHH-HHHHhCCCeEEEEEE
Confidence            8765322  11    12478888 799999999988765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.00  E-value=7.5e-10  Score=96.72  Aligned_cols=120  Identities=17%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH
Q 019699           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~  165 (337)
                      ..|.+.+..+..  .+++.+||+||||+|..+..++... ..++++||+++.+++.|++.+...     .++++++.+|+
T Consensus         9 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~   80 (209)
T 2p8j_A            9 PQLYRFLKYCNE--SNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENFSREN-----NFKLNISKGDI   80 (209)
T ss_dssp             THHHHHHHHHHH--SSSCSEEEEESCCSSSCTHHHHHHT-TCEEEEEECCHHHHHHHHHHHHHH-----TCCCCEEECCT
T ss_pred             hhHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEECch
Confidence            345565543332  3567899999999998744444443 468999999999999999987643     25788999998


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+. .-..++||+|++...-..  .+  .-....+++. +++.|+|||++++..
T Consensus        81 ~~~-~~~~~~fD~v~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           81 RKL-PFKDESMSFVYSYGTIFH--MR--KNDVKEAIDE-IKRVLKPGGLACINF  128 (209)
T ss_dssp             TSC-CSCTTCEEEEEECSCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhC-CCCCCceeEEEEcChHHh--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            753 223478999998643111  00  0123568888 799999999998764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.00  E-value=6.5e-10  Score=102.59  Aligned_cols=116  Identities=8%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      .++.+||+||||+|..+..+++..  .+|++||+++.+++.|++...........+++.+..+|+.+.-..  ..++||+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            466899999999999999999873  499999999999999998753211111125789999998776421  3478999


Q ss_pred             EEEe--CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGD--LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D--~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++.  ............-....+++. +.++|+|||++++..
T Consensus       134 V~~~g~~l~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          134 VICLGNSFAHLPDSKGDQSEHRLALKN-IASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEECTTCGGGSCCSSSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEEcChHHhhcCccccCHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9985  222110000000113578898 899999999999874

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.00  E-value=1.3e-09  Score=96.03  Aligned_cols=103  Identities=19%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++.+||+||||+|.++..+++.. +..+|+++|+++.+++.|++.+....    -++++++.+|+...+. ..++||+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~  149 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG----YDNVIVIVGDGTLGYE-PLAPYDR  149 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-CCCCeeE
Confidence            3556799999999999999998874 34799999999999999999876432    2469999999865443 2367999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++..-+.       +.     +. +.+.|+|||.+++...
T Consensus       150 v~~~~~~~~-------~~-----~~-~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          150 IYTTAAGPK-------IP-----EP-LIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             EEESSBBSS-------CC-----HH-HHHTEEEEEEEEEEES
T ss_pred             EEECCchHH-------HH-----HH-HHHHcCCCcEEEEEEC
Confidence            999865322       11     24 6789999999988764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.99  E-value=1.4e-10  Score=105.27  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCC---------------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPR---------------------  157 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~r---------------------  157 (337)
                      .+.+||++|||+|.++.++++.  .+..+|+++|+|+.+++.|+++...... .+ ..+                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-TARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-cccchhhhhhhhhcccccchhhhh
Confidence            5679999999999999999886  4457899999999999999987643200 00 011                     


Q ss_pred             ----eE-------------EEEccHHHHHhh----cCCceeEEEEeCCCCCCCCCCc---CCchHHHHHHHhccccCCCc
Q 019699          158 ----LE-------------LVINDARAELES----RKESYDVIIGDLADPIEGGPCY---KLYTKSFYEFVVKPRLNPEG  213 (337)
Q Consensus       158 ----v~-------------v~~~D~~~~l~~----~~~~yDvIi~D~~dp~~~~p~~---~L~t~ef~~~~~~~~L~p~G  213 (337)
                          ++             ++.+|..+.+..    ..++||+|+++++-........   .-.-..+++. +.++|+|||
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG  208 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS-LASALPAHA  208 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH-HHHHSCTTC
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH-HHHhcCCCc
Confidence                55             999998776532    3358999999975211000000   0112468888 789999999


Q ss_pred             eEEE
Q 019699          214 IFVT  217 (337)
Q Consensus       214 vlv~  217 (337)
                      ++++
T Consensus       209 ~l~~  212 (250)
T 1o9g_A          209 VIAV  212 (250)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.99  E-value=3.1e-09  Score=90.93  Aligned_cols=122  Identities=13%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..   +|++||+|+.+++.             .++++++.+|+.+.+..  ++||+|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------------~~~~~~~~~d~~~~~~~--~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------------HRGGNLVRADLLCSINQ--ESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------------CSSSCEEECSTTTTBCG--GGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------------ccCCeEEECChhhhccc--CCCCEEE
Confidence            456799999999999999999864   99999999999987             25789999999875432  7899999


Q ss_pred             EeCCCCCCCCC---CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          181 GDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       181 ~D~~dp~~~~p---~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                      ++++-.....+   .......++++. +.+.| |||.+++....   .   .....+.+.+++. |..+...
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-pgG~l~~~~~~---~---~~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDR-FVDAV-TVGMLYLLVIE---A---NRPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHH-HHHHC-CSSEEEEEEEG---G---GCHHHHHHHHHHTTCEEEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHH-HHhhC-CCCEEEEEEec---C---CCHHHHHHHHHHCCCcEEEEE
Confidence            98763221000   000112356776 56677 99998875421   1   1234455556554 5544443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.99  E-value=7.3e-10  Score=107.85  Aligned_cols=104  Identities=23%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCC-eEEEEccHHHHHh-hcCCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELE-SRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~r-v~v~~~D~~~~l~-~~~~~yDv  178 (337)
                      +..+|||+++|+|..+.++++.. +..+|++||+|+..++.+++++..++  + +.+ ++++.+|+.++++ ...++||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l-~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--I-PEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--C-CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            45799999999999999999863 44789999999999999999998763  2 235 9999999999998 66678999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++|++.    .+      .+|++. +.+.|++||++++..
T Consensus       129 V~lDP~g----~~------~~~l~~-a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDPFG----TP------VPFIES-VALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEECCCc----CH------HHHHHH-HHHHhCCCCEEEEEe
Confidence            9999831    11      468887 678899999887753

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.99  E-value=9.8e-10  Score=99.04  Aligned_cols=106  Identities=17%  Similarity=0.244  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++.  ..+|++||+++.+++.|++.+...     ..+++++.+|..+..  ..++||+|+
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~v~  110 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAVT  110 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc-----CCceEEEECChhhcc--cCCCccEEE
Confidence            45689999999999999999986  358999999999999999987643     247999999987742  246899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +....... .+  .-....+++. ++++|+|||++++..
T Consensus       111 ~~~~~~~~-~~--~~~~~~~l~~-~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          111 MFFSTIMY-FD--EEDLRKLFSK-VAEALKPGGVFITDF  145 (252)
T ss_dssp             ECSSGGGG-SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcCCchhc-CC--HHHHHHHHHH-HHHHcCCCeEEEEec
Confidence            75321100 00  0012468888 799999999998764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.99  E-value=1.2e-09  Score=101.00  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++..+ .+|++||+++.+++.|++.+....   -.++++++.+|+.+. .-..++||+|
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v  154 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFI  154 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEEcCcccC-CCCCCCEeEE
Confidence            35678999999999999999998643 589999999999999999875432   146899999998653 2234789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+  .  ...+++. +++.|+|||.+++..
T Consensus       155 ~~~~~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          155 WSQDAFLH--SP--D--KLKVFQE-CARVLKPRGVMAITD  187 (297)
T ss_dssp             EEESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Eecchhhh--cC--C--HHHHHHH-HHHHcCCCeEEEEEE
Confidence            98754211  11  1  3678898 899999999988764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.99  E-value=6.2e-10  Score=106.04  Aligned_cols=99  Identities=16%  Similarity=0.206  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||++|||+|.++.. ++  +..+|++||+|+.+++.|++++..++  + +++++++.+|+.+++    ++||+|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~--l-~~~v~~~~~D~~~~~----~~fD~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNK--L-EHKIIPILSDVREVD----VKGNRVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTT--C-TTTEEEEESCGGGCC----CCEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEECChHHhc----CCCcEEE
Confidence            4678999999999999999 77  36899999999999999999987653  1 358999999999887    6899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++..          ..++++. +.+.|+|||++++...
T Consensus       264 ~dpP~~----------~~~~l~~-~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          264 MNLPKF----------AHKFIDK-ALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             ECCTTT----------GGGGHHH-HHHHEEEEEEEEEEEE
T ss_pred             ECCcHh----------HHHHHHH-HHHHcCCCCEEEEEEe
Confidence            997421          1267777 7889999998887653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.99  E-value=1.3e-09  Score=96.47  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +++.+||+||||+|.++..+++.  ..+|+++|+++.+++.|++.+..... .....+++++.+|+... ....++||+|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence            56789999999999999999987  36899999999999999998754321 11134789999998654 2235789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+ ..-....+++. +++.|+|||.+++..
T Consensus       106 ~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          106 VMQAFLTS--VP-DPKERSRIIKE-VFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEESCGGG--CC-CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEcchhhc--CC-CHHHHHHHHHH-HHHHcCCCeEEEEEE
Confidence            99754211  01 00111268888 799999999988764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=105.54  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=84.8

Q ss_pred             hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH
Q 019699           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (337)
Q Consensus        87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~  166 (337)
                      .|.++|..-.-.  -+.+.||+||||+|.++..+++. +..+|++||.++ +++.|++....+.   -..+++++.+|..
T Consensus        70 aY~~Ai~~~~~~--~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~---~~~~i~~i~~~~~  142 (376)
T 4hc4_A           70 AYRLGILRNWAA--LRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNG---LEDRVHVLPGPVE  142 (376)
T ss_dssp             HHHHHHHTTHHH--HTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhCHHh--cCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcC---CCceEEEEeeeee
Confidence            455555432111  25689999999999999888876 568999999997 7899998876553   2578999999987


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++  ..++++|+|+++.....  ...+.+ -..++.. ..+.|+|||+++..
T Consensus       143 ~~--~lpe~~DvivsE~~~~~--l~~e~~-l~~~l~a-~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          143 TV--ELPEQVDAIVSEWMGYG--LLHESM-LSSVLHA-RTKWLKEGGLLLPA  188 (376)
T ss_dssp             TC--CCSSCEEEEECCCCBTT--BTTTCS-HHHHHHH-HHHHEEEEEEEESC
T ss_pred             ee--cCCccccEEEeeccccc--ccccch-hhhHHHH-HHhhCCCCceECCc
Confidence            65  34578999999876422  111122 2355555 57899999998743

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.98  E-value=3.3e-10  Score=102.72  Aligned_cols=80  Identities=11%  Similarity=0.114  Sum_probs=63.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-HHhhcC----Cce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRK----ESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-~l~~~~----~~y  176 (337)
                      ++.+||+||||+|.++..+++..+..+|++||+++.+++.|++++..+.   -..+++++.+|+.+ ++....    ++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC---CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            5679999999999999888876445799999999999999999876532   13579999999765 222221    589


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |+|+++++
T Consensus       142 D~i~~npp  149 (254)
T 2h00_A          142 DFCMCNPP  149 (254)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999976

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.98  E-value=1.7e-09  Score=96.08  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-----CCcEEEEEECChHHHHHHHhhhhhcc-CCCCCCCeEEEEccHHHHHh---h
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELE---S  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-----~~~~v~~VEid~~vi~~a~~~f~~~~-~~~~d~rv~v~~~D~~~~l~---~  171 (337)
                      .+..+||+||||+|..+..+++..     +..+|+++|+++.+++.|++.+.... ..+..++++++.+|+.+...   .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            456899999999999999998864     34699999999999999999876431 00113689999999987431   1


Q ss_pred             cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ..++||+|+++...+       ++     ++. +.+.|+|||++++...
T Consensus       159 ~~~~fD~I~~~~~~~-------~~-----~~~-~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASAS-------EL-----PEI-LVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBS-------SC-----CHH-HHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchH-------HH-----HHH-HHHhcCCCcEEEEEEc
Confidence            236799999986532       22     244 6788999999988753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.98  E-value=8.2e-10  Score=98.55  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=79.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC------CcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccHHHHHhhcC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT------VEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~------~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~~~~l~~~~  173 (337)
                      .+..+||+||||+|..+..+++..+      ..+|+++|+++.+++.|++.+..... .+..++++++.+|+.+.+.. .
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  161 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  161 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-C
Confidence            4457999999999999999888543      25899999999999999998753210 00025899999999874332 3


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      ++||+|+++...+       ++.     +. +.+.|+|||.+++..++
T Consensus       162 ~~fD~I~~~~~~~-------~~~-----~~-~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          162 APYNAIHVGAAAP-------DTP-----TE-LINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CSEEEEEECSCBS-------SCC-----HH-HHHTEEEEEEEEEEESC
T ss_pred             CCccEEEECCchH-------HHH-----HH-HHHHhcCCCEEEEEEec
Confidence            6799999987532       221     34 67889999999988754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=1.1e-09  Score=98.38  Aligned_cols=104  Identities=10%  Similarity=0.043  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc----CCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~----~~~y  176 (337)
                      .+..+||+||||+|..+..+++...  +|++||+++.+++.|++.+.       ..+++++.+|+.+.-...    ...|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccCc
Confidence            4567999999999999999998753  89999999999999998762       358999999987643221    1349


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|++...-..  .+  .-....+++. ++++|+|||.+++.
T Consensus       126 d~v~~~~~~~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          126 ANIYMRTGFHH--IP--VEKRELLGQS-LRILLGKQGAMYLI  162 (245)
T ss_dssp             CEEEEESSSTT--SC--GGGHHHHHHH-HHHHHTTTCEEEEE
T ss_pred             cEEEEcchhhc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            99999876432  11  1123578888 79999999986654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.98  E-value=1.9e-09  Score=96.01  Aligned_cols=99  Identities=21%  Similarity=0.340  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++..  .+|++||+++.+++.|++.+...      .+++++.+|+.+.+. ..++||+|
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~-~~~~fD~v  138 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLGYE-EEKPYDRV  138 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGCCG-GGCCEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc------CCeEEEECCcccccc-cCCCccEE
Confidence            3566799999999999999999874  79999999999999999987543      289999999877332 24689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +++..-+       ++.     +. +.+.|+|||.+++...
T Consensus       139 ~~~~~~~-------~~~-----~~-~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          139 VVWATAP-------TLL-----CK-PYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EESSBBS-------SCC-----HH-HHHTEEEEEEEEEEEC
T ss_pred             EECCcHH-------HHH-----HH-HHHHcCCCcEEEEEEc
Confidence            9986422       222     23 5789999999988754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.97  E-value=5.7e-09  Score=102.56  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ..++.+||++|||.|+.+..+++..+..+|+++|+++..++.+++++....     -+++++.+|+.++... ..++||+
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHTTCCEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-----CCeEEEeCchhhchhhcccCCCCE
Confidence            345679999999999999999987655799999999999999999876532     2478999998765432 2368999


Q ss_pred             EEEeCCCCCCC----CCCc-------CC-----chHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEG----GPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~----~p~~-------~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++|++-....    .|..       .+     ...++++. +.+.|+|||.++....
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~-a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATC  375 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEES
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence            99998632100    0100       00     11478888 7899999999987653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.97  E-value=6.4e-10  Score=102.39  Aligned_cols=112  Identities=14%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++. +..++++||+++.+++.|++.+....   ...+++++.+|+.+.-....++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC---CCccEEEEECCccccccCCCCCcCEEE
Confidence            56789999999999999888876 35699999999999999999876432   135799999998764211357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .....-....+++. +.++|+|||.+++..
T Consensus       139 ~~~~l~~--~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          139 SQFSFHY--AFSTSESLDIAQRN-IARHLRPGGYFIMTV  174 (298)
T ss_dssp             EESCGGG--GGSSHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             ECchhhh--hcCCHHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence            8854211  00000112578888 799999999998875

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.97  E-value=1.7e-09  Score=94.26  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~  184 (337)
                      +||+||||+|..+..+++.  ..+++++|+++.+++.|++.+...     ..+++++.+|+.+. ....++||+|++...
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK-----GVKITTVQSNLADF-DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECCBTTTB-SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcChhhc-CCCcCCccEEEEEhh
Confidence            9999999999999999886  359999999999999999987643     24799999998664 223478999998532


Q ss_pred             CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       185 dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       ..   +  .-....+++. +.+.|+|||.+++..
T Consensus       104 -~~---~--~~~~~~~l~~-~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 -HL---P--SSLRQQLYPK-VYQGLKPGGVFILEG  131 (202)
T ss_dssp             -CC---C--HHHHHHHHHH-HHTTCCSSEEEEEEE
T ss_pred             -cC---C--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence             11   1  1123578888 799999999988764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.97  E-value=2.3e-09  Score=102.49  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..++++ +..+|++||+++ +++.|++.+..+.   -.++++++.+|..++  ..+++||+|+
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---l~~~v~~~~~d~~~~--~~~~~~D~Iv  121 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIII  121 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC---CCCcEEEEEcchhhC--CCCCceeEEE
Confidence            45689999999999999999986 467999999997 7899988876432   136899999998764  2236899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++.....  .. .. ...+++.. +++.|+|||++++..
T Consensus       122 s~~~~~~--~~-~~-~~~~~l~~-~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          122 SEPMGYM--LF-NE-RMLESYLH-AKKYLKPSGNMFPTI  155 (348)
T ss_dssp             ECCCBTT--BT-TT-SHHHHHHH-GGGGEEEEEEEESCE
T ss_pred             EeCchhc--CC-hH-HHHHHHHH-HHhhcCCCeEEEEec
Confidence            9864211  00 01 12467777 789999999998553

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.96  E-value=2.2e-09  Score=102.41  Aligned_cols=106  Identities=18%  Similarity=0.179  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..+++. +..+|++||+++ +++.|++.+..+.  + .++++++.+|+.++ .-..++||+|+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~~D~Iv  136 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK--L-EDTITLIKGKIEEV-HLPVEKVDVII  136 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT--C-TTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC--C-CCcEEEEEeeHHHh-cCCCCcEEEEE
Confidence            56789999999999999999987 457999999997 9999999876432  1 36899999998764 22237899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      ++.....   ....-.-..+++. +++.|+|||+++
T Consensus       137 s~~~~~~---l~~~~~~~~~l~~-~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYF---LLFESMLDSVLYA-KNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTT---BTTTCHHHHHHHH-HHHHEEEEEEEE
T ss_pred             EcCchhh---ccCHHHHHHHHHH-HHhhcCCCcEEE
Confidence            9863111   0011122457777 789999999987

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.96  E-value=1.9e-09  Score=96.03  Aligned_cols=99  Identities=14%  Similarity=0.251  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++..  .+++++|+++.+++.|++.+         ++++++.+|+.++-  ..++||+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDFR--LGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTCC--CSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHcc--cCCCCcEEE
Confidence            567899999999999999999874  38999999999999999864         46899999987642  257899999


Q ss_pred             EeCCCCCCCCCCcCC----chHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKL----YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L----~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +....      ..++    ....+++. ++++|+|||.+++..
T Consensus       106 ~~~~~------~~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          106 SMFSS------VGYLKTTEELGAAVAS-FAEHLEPGGVVVVEP  141 (239)
T ss_dssp             ECTTG------GGGCCSHHHHHHHHHH-HHHTEEEEEEEEECC
T ss_pred             EcCch------HhhcCCHHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence            53210      0112    12578888 799999999999864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.96  E-value=2.9e-09  Score=105.38  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-Ccee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~~yD  177 (337)
                      ..++.+||++|||.|+.+..+++..+. .+|+++|+++..++.+++++...+    -++++++.+|+.++..... ++||
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~fD  332 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG----IKIVKPLVKDARKAPEIIGEEVAD  332 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCTTCCSSSSCSSCEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEEEcChhhcchhhccCCCC
Confidence            345679999999999999999987544 799999999999999999876432    2479999999877543222 6799


Q ss_pred             EEEEeCCCCCCC----CCC-------cCC-----chHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEG----GPC-------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~----~p~-------~~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +|++|++-....    .|.       ..+     ...++++. +.+.|+|||.++....
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES-AARLVKPGGRLLYTTC  390 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHH-HHTTEEEEEEEEEEES
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeC
Confidence            999998632100    010       000     01578888 7899999999987653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.95  E-value=3.9e-09  Score=95.46  Aligned_cols=150  Identities=9%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++..+|||||||+|.++..+++..+..+|+++|+|+..++.|+++...+.  + ..+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l-~~~I~~~~gD~l~~~~~-~~~~D~Iv   95 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--L-TSKIDVRLANGLSAFEE-ADNIDTIT   95 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--C-TTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhhcccc-ccccCEEE
Confidence            55689999999999999999998667799999999999999999987553  1 46899999999887643 23799988


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTW  259 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~  259 (337)
                      +..       .... .-.+++.. ..+.|+++|.|+++..     .+   ...+.+.|.+. |..+.--.+  -.-+...
T Consensus        96 iaG-------mGg~-lI~~IL~~-~~~~l~~~~~lIlqp~-----~~---~~~lr~~L~~~Gf~i~~E~lv--~e~~~~Y  156 (230)
T 3lec_A           96 ICG-------MGGR-LIADILNN-DIDKLQHVKTLVLQPN-----NR---EDDLRKWLAANDFEIVAEDIL--TENDKRY  156 (230)
T ss_dssp             EEE-------ECHH-HHHHHHHH-TGGGGTTCCEEEEEES-----SC---HHHHHHHHHHTTEEEEEEEEE--EC--CEE
T ss_pred             EeC-------CchH-HHHHHHHH-HHHHhCcCCEEEEECC-----CC---hHHHHHHHHHCCCEEEEEEEE--EECCEEE
Confidence            742       2122 23578887 7899999999999842     22   23455566655 554332211  1111223


Q ss_pred             EEEEEecCCCCCCH
Q 019699          260 GWIMASDSPFTLSA  273 (337)
Q Consensus       260 ~~~~as~~p~~~~~  273 (337)
                      .++.+++.+.+++.
T Consensus       157 eii~~~~~~~~~~~  170 (230)
T 3lec_A          157 EILVVKHGHMNLTA  170 (230)
T ss_dssp             EEEEEEECCCCCCH
T ss_pred             EEEEEEeCCCCCCH
Confidence            45667665544544

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.95  E-value=2.2e-09  Score=96.34  Aligned_cols=103  Identities=25%  Similarity=0.306  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|.++..+++..+ .+|+++|+++.+++.|++.+....    -++++++.+|+..-+.. ..+||+|
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~fD~I  162 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFPP-KAPYDVI  162 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEECCcccCCCC-CCCccEE
Confidence            34567999999999999999998755 789999999999999999876432    24599999998332322 2459999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +++..-+       .+.     +. +.+.|+|||.+++..+.
T Consensus       163 i~~~~~~-------~~~-----~~-~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          163 IVTAGAP-------KIP-----EP-LIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EECSBBS-------SCC-----HH-HHHTEEEEEEEEEEECS
T ss_pred             EECCcHH-------HHH-----HH-HHHhcCCCcEEEEEEec
Confidence            9986432       121     23 57889999999987653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.94  E-value=5.8e-09  Score=104.08  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++.+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++....    -++++++.+|+.++.....++||+|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g----~~nv~~~~~D~~~~~~~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG----ISNVALTHFDGRVFGAAVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHhhhhccccCCEEE
Confidence            56799999999999999998864 34789999999999999999886432    24799999999887543457899999


Q ss_pred             EeCCCCCC----CCCCc-CCc-----------hHHHHHHHhccccCCCceEEEeCCC
Q 019699          181 GDLADPIE----GGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       181 ~D~~dp~~----~~p~~-~L~-----------t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +|++-...    ..|.. ...           ..++++. +.++|+|||.++..+.+
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDS-AFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHH-HHHhcCCCCEEEEeccc
Confidence            99862110    01110 011           2467787 78999999999876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.94  E-value=2.4e-09  Score=97.66  Aligned_cols=123  Identities=11%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ++..+|||||||+|.++..+++..+..+|+++|+|+..++.|+++...+.  + ..+++++.+|+.+.+.. .++||+|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l-~~~I~v~~gD~l~~~~~-~~~~D~Iv   95 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--L-TEQIDVRKGNGLAVIEK-KDAIDTIV   95 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--C-TTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CceEEEEecchhhccCc-cccccEEE
Confidence            55689999999999999999998667799999999999999999987553  1 45899999999887643 23699998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKY  244 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~  244 (337)
                      +.       +.... .-.+++.. ..+.|+++|.|+++..     ..   ...+.+.|.+. |..
T Consensus        96 ia-------gmGg~-lI~~IL~~-~~~~L~~~~~lIlq~~-----~~---~~~lr~~L~~~Gf~i  143 (244)
T 3gnl_A           96 IA-------GMGGT-LIRTILEE-GAAKLAGVTKLILQPN-----IA---AWQLREWSEQNNWLI  143 (244)
T ss_dssp             EE-------EECHH-HHHHHHHH-TGGGGTTCCEEEEEES-----SC---HHHHHHHHHHHTEEE
T ss_pred             Ee-------CCchH-HHHHHHHH-HHHHhCCCCEEEEEcC-----CC---hHHHHHHHHHCCCEE
Confidence            74       22122 23568887 7899999999999842     22   23455666665 554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.93  E-value=3.8e-09  Score=100.13  Aligned_cols=107  Identities=16%  Similarity=0.197  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+..+.   -.++++++.+|+.++- ...++||+|+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~Iv  110 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG---FSDKITLLRGKLEDVH-LPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT---CTTTEEEEESCTTTSC-CSSSCEEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC---CCCCEEEEECchhhcc-CCCCcccEEE
Confidence            35689999999999999999986 45799999999 58999999876432   1468999999987642 2236899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ++.....  .. ..-.-..+++. +++.|+|||+++.
T Consensus       111 s~~~~~~--l~-~~~~~~~~l~~-~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYF--LL-YESMMDTVLYA-RDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTT--BS-TTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             EeCchhh--cc-cHHHHHHHHHH-HHhhcCCCeEEEE
Confidence            9864221  00 11112457776 6899999999874

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.93  E-value=1.7e-09  Score=94.83  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+    +..+++++|+++.+++.|++.+         ++++++.+|+.+. .-..++||+|+
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  100 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL-PFPGESFDVVL  100 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC-CSCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC-CCCCCcEEEEE
Confidence            36789999999999999877    3348999999999999999875         4688899997653 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  .+    ....+++. +.++|+|||.+++..
T Consensus       101 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          101 LFTTLEF--VE----DVERVLLE-ARRVLRPGGALVVGV  132 (211)
T ss_dssp             EESCTTT--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EcChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            8865322  11    13578888 799999999988765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.92  E-value=1.2e-09  Score=102.36  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC---CCCCCeEEEEccHHHHH-----hhc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA---FSDPRLELVINDARAEL-----ESR  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~---~~d~rv~v~~~D~~~~l-----~~~  172 (337)
                      +++.+||+||||+|..+..+++. +..+++++|+++.+++.|++.+......   ....+++++.+|+.+..     ...
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            46789999999999999999875 4679999999999999999987532100   01347999999987652     212


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCC-chHHHHHHHhccccCCCceEEEeC
Q 019699          173 KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .++||+|++...-++  .. ..+ ....+++. ++++|+|||++++..
T Consensus       112 ~~~fD~V~~~~~l~~--~~-~~~~~~~~~l~~-~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          112 QMCFDICSCQFVCHY--SF-ESYEQADMMLRN-ACERLSPGGYFIGTT  155 (313)
T ss_dssp             TCCEEEEEEETCGGG--GG-GSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhh--cc-CCHHHHHHHHHH-HHHHhCCCcEEEEec
Confidence            358999999764322  00 011 12478898 799999999999874

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.92  E-value=2.5e-09  Score=94.50  Aligned_cols=114  Identities=13%  Similarity=0.048  Sum_probs=76.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..+..+|++||+++.+++.+.+..........-++++++.+|+.+ +....+. |.|+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~-d~v~  103 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-LPPLSGV-GELH  103 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-CCSCCCE-EEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-CCCCCCC-CEEE
Confidence            4668999999999999999999877789999999999888533222110000123589999999877 3333344 8777


Q ss_pred             EeCCCCCCCCCCcC-CchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~-L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +..+...  ....+ --...+++. +++.|+|||.+++..
T Consensus       104 ~~~~~~~--~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          104 VLMPWGS--LLRGVLGSSPEMLRG-MAAVCRPGASFLVAL  140 (218)
T ss_dssp             EESCCHH--HHHHHHTSSSHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEccchh--hhhhhhccHHHHHHH-HHHHcCCCcEEEEEe
Confidence            5543110  00000 001478888 799999999998854

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.92  E-value=5.5e-10  Score=100.45  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=78.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECC-hHHHHHH---HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID-EEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid-~~vi~~a---~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      .++.+||+||||+|..+..+++..+..+|++||++ +.+++.|   ++.....    .-++++++.+|+..+-....+.+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~----~~~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG----GLSNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----CCSSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEcCHHHhhhhccCeE
Confidence            45679999999999999999876667899999999 7777776   6654322    13579999999877622223667


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      |.|.+..+.+.. .........++++. ++++|+|||.+++
T Consensus        99 ~~i~~~~~~~~~-~~~~~~~~~~~l~~-~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTL-LEYVIKPNRDILSN-VADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHH-HHHHHTTCHHHHHH-HHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHH-hhhhhcchHHHHHH-HHHhcCCCcEEEE
Confidence            888777542210 00000112468888 8999999999988

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.92  E-value=4.5e-09  Score=90.90  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC---------cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHH-
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV---------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAEL-  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~---------~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l-  169 (337)
                      .++.+||+||||+|.++..+++..+.         .+|++||+++..               .-++++++ .+|....- 
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------------cCCCCeEEEeccCCCHHH
Confidence            45689999999999999999987543         789999999831               12467888 88865431 


Q ss_pred             ----hh--cCCceeEEEEeCCCCCCCCCCcCCch--------HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699          170 ----ES--RKESYDVIIGDLADPIEGGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (337)
Q Consensus       170 ----~~--~~~~yDvIi~D~~dp~~~~p~~~L~t--------~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~  235 (337)
                          ..  ..++||+|++|...... +  .....        ..+++. +.+.|+|||.+++....      .+....+.
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~------~~~~~~~~  155 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNAT-G--FRDLDHDRLISLCLTLLSV-TPDILQPGGTFLCKTWA------GSQSRRLQ  155 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCC-S--CHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC------SGGGHHHH
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCC-C--CcccCHHHHHHHHHHHHHH-HHHHhcCCCEEEEEecC------CccHHHHH
Confidence                11  13579999998742210 1  11111        367787 78999999999887421      12234566


Q ss_pred             HHHhhhcCceeEE
Q 019699          236 NTLRQVFKYVVPY  248 (337)
Q Consensus       236 ~~l~~vF~~v~~~  248 (337)
                      ..++..|..+..+
T Consensus       156 ~~l~~~f~~v~~~  168 (196)
T 2nyu_A          156 RRLTEEFQNVRII  168 (196)
T ss_dssp             HHHHHHEEEEEEE
T ss_pred             HHHHHHhcceEEE
Confidence            7777788776654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.91  E-value=5.9e-09  Score=92.57  Aligned_cols=106  Identities=23%  Similarity=0.302  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .++.+||+||||+|..+..+++.. +..+|+++|+++.+++.+++.+..... .+..++++++.+|+..... ....||+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  154 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  154 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence            456799999999999999998863 346999999999999999998754210 0013579999999875332 2467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++...+       ++.     +. +.+.|+|||.+++...
T Consensus       155 i~~~~~~~-------~~~-----~~-~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAAAP-------VVP-----QA-LIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEECSBBS-------SCC-----HH-HHHTEEEEEEEEEEES
T ss_pred             EEECCchH-------HHH-----HH-HHHhcCCCcEEEEEEe
Confidence            99986422       222     34 6789999999998764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.90  E-value=2.1e-09  Score=94.55  Aligned_cols=104  Identities=14%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|.++..+....+..+++++|+|+.+++++++++...+.   ..++++  .|...-  ..++.||+|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~---~~~v~~--~d~~~~--~~~~~~DvVL  120 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT---TIKYRF--LNKESD--VYKGTYDVVF  120 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC---SSEEEE--ECCHHH--HTTSEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CccEEE--eccccc--CCCCCcChhh
Confidence            668999999999999999998876677999999999999999999865421   114444  666554  2457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .-..-|.-.....     ..+ . +.++|+|+|+++..
T Consensus       121 a~k~LHlL~~~~~-----al~-~-v~~~L~pggvfISf  151 (200)
T 3fzg_A          121 LLKMLPVLKQQDV-----NIL-D-FLQLFHTQNFVISF  151 (200)
T ss_dssp             EETCHHHHHHTTC-----CHH-H-HHHTCEEEEEEEEE
T ss_pred             HhhHHHhhhhhHH-----HHH-H-HHHHhCCCCEEEEe
Confidence            8765221000001     123 3 57899999998854

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.88  E-value=2.2e-08  Score=96.56  Aligned_cols=111  Identities=13%  Similarity=0.101  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .....+||++|||+|.++.++++.....+|+++|+|+.+++.|++++....   -+++++++.+|+.+.. ...++||+|
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g---l~~~i~~~~~D~~~~~-~~~~~fD~I  290 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG---VLDKIKFIQGDATQLS-QYVDSVDFA  290 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT---CGGGCEEEECCGGGGG-GTCSCEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhhCC-cccCCcCEE
Confidence            456789999999999999999987544589999999999999999986542   1357999999998854 334789999


Q ss_pred             EEeCCCCCCCCCC---cCCchHHHHHHHhccccCCCceEEE
Q 019699          180 IGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       180 i~D~~dp~~~~p~---~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ++|++-....+..   ..+| .++++. ++++| +++.+++
T Consensus       291 i~npPyg~r~~~~~~~~~ly-~~~~~~-l~r~l-~g~~~~i  328 (373)
T 3tm4_A          291 ISNLPYGLKIGKKSMIPDLY-MKFFNE-LAKVL-EKRGVFI  328 (373)
T ss_dssp             EEECCCC------CCHHHHH-HHHHHH-HHHHE-EEEEEEE
T ss_pred             EECCCCCcccCcchhHHHHH-HHHHHH-HHHHc-CCeEEEE
Confidence            9998743211111   1122 467777 78888 3333333

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.88  E-value=4.8e-09  Score=97.26  Aligned_cols=110  Identities=10%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             CCCeEEEEecchhHHHHH----HHhcCCCcEE--EEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-----
Q 019699          102 NPKTIFIMGGGEGSTARE----ILRHKTVEKV--VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~----ll~~~~~~~v--~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-----  170 (337)
                      ++.+||+||||+|.++..    ++...+..+|  ++||+++++++.|++.+.... ...+-++++..+|+.++..     
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-NLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-SCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-CCCcceEEEEecchhhhhhhhccc
Confidence            456999999999976543    3333234444  999999999999999864311 1112234556677766542     


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ...++||+|++...-.+-..      -..+++. ++++|+|||.+++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKD------IPATLKF-FHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSC------HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence            12578999998865322111      2468888 799999999988754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.87  E-value=4.1e-09  Score=92.83  Aligned_cols=99  Identities=19%  Similarity=0.162  Sum_probs=76.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-hhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-~~~~~~yDvI  179 (337)
                      .++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+           .+++.+|+.++. .-..++||+|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcCCCCCCCccCEE
Confidence            56789999999999999999987 4 79999999999999998753           157788876542 2224789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+    -..++++. +++.|+|||.+++..
T Consensus        98 ~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           98 IFGDVLEH--LF----DPWAVIEK-VKPYIKQNGVILASI  130 (230)
T ss_dssp             EEESCGGG--SS----CHHHHHHH-TGGGEEEEEEEEEEE
T ss_pred             EECChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence            98754211  11    12578898 899999999998865

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.87  E-value=8.7e-09  Score=95.33  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=80.3

Q ss_pred             CCCeEEEEecch---hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--H-------
Q 019699          102 NPKTIFIMGGGE---GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L-------  169 (337)
Q Consensus       102 ~p~~VLiIG~G~---G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l-------  169 (337)
                      ...+||+||||+   |.+...+.+..+..+|++||+||.+++.|++.+..      .++++++.+|..+.  +       
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence            458999999999   98877676665668999999999999999998732      36899999998753  2       


Q ss_pred             hhcC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          170 ESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       170 ~~~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ...+ .+||+|++...-..  -+. . -...+++. +.++|+|||.|++..
T Consensus       151 ~~~d~~~~d~v~~~~vlh~--~~d-~-~~~~~l~~-~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHY--LSP-D-VVDRVVGA-YRDALAPGSYLFMTS  196 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGG--SCT-T-THHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             ccCCCCCCEEEEEechhhh--CCc-H-HHHHHHHH-HHHhCCCCcEEEEEE
Confidence            1111 47999998764222  110 1 23578888 799999999998765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.87  E-value=5e-09  Score=98.39  Aligned_cols=114  Identities=9%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCC--CCeEEEEccH----H-HHHhh--
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--PRLELVINDA----R-AELES--  171 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d--~rv~v~~~D~----~-~~l~~--  171 (337)
                      +.+.+||+||||+|..+..+++. +..+|++||+++.+++.|++...........  .+++++++|.    . .-+..  
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            34689999999999866555554 3578999999999999999976532100000  1256777776    1 12221  


Q ss_pred             cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..++||+|++-..-...-.+ .+  ...+++. ++++|+|||++++..
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~-~~--~~~~l~~-~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHP-RH--YATVMNN-LSELTASGGKVLITT  169 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCST-TT--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCH-HH--HHHHHHH-HHHHcCCCCEEEEEe
Confidence            24689999876532110011 12  2578998 899999999998764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=3.1e-09  Score=96.85  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++  +..+|++||+++.+++.|++.          ++++++.+|+.++ .-..++||+|
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~d~~~~-~~~~~~fD~v   98 (261)
T 3ege_A           32 LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH----------PQVEWFTGYAENL-ALPDKSVDGV   98 (261)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC----------TTEEEECCCTTSC-CSCTTCBSEE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc----------cCCEEEECchhhC-CCCCCCEeEE
Confidence            45778999999999999999987  347999999999999887653          3799999998653 2235789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-...      ---..+++. +.++|+ ||.+++.
T Consensus        99 ~~~~~l~~~------~~~~~~l~~-~~~~Lk-gG~~~~~  129 (261)
T 3ege_A           99 ISILAIHHF------SHLEKSFQE-MQRIIR-DGTIVLL  129 (261)
T ss_dssp             EEESCGGGC------SSHHHHHHH-HHHHBC-SSCEEEE
T ss_pred             EEcchHhhc------cCHHHHHHH-HHHHhC-CcEEEEE
Confidence            998652210      112578888 899999 9966554

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.86  E-value=1.1e-08  Score=99.74  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-----ccCCCCCCCeEEEEccHHHHHhh-cC
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEAFSDPRLELVINDARAELES-RK  173 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-----~~~~~~d~rv~v~~~D~~~~l~~-~~  173 (337)
                      ..+..+|||||||+|.++..+++..+..+|++||+++.++++|++....     ....+..++++++.+|+.+.--. .-
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~  250 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  250 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc
Confidence            4567899999999999999998776666899999999999999875321     00112236899999998764211 11


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ..||+|+++.+- .  .+  .  ....++. +.+.|+|||.+++.
T Consensus       251 ~~aDVVf~Nn~~-F--~p--d--l~~aL~E-i~RvLKPGGrIVss  287 (438)
T 3uwp_A          251 ANTSVIFVNNFA-F--GP--E--VDHQLKE-RFANMKEGGRIVSS  287 (438)
T ss_dssp             HTCSEEEECCTT-C--CH--H--HHHHHHH-HHTTSCTTCEEEES
T ss_pred             CCccEEEEcccc-c--Cc--h--HHHHHHH-HHHcCCCCcEEEEe
Confidence            469999997642 1  11  1  1344566 57899999999875

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.85  E-value=2.9e-08  Score=93.22  Aligned_cols=172  Identities=19%  Similarity=0.225  Sum_probs=106.0

Q ss_pred             CCCeEEEEecchhHHHH----HHHhcCCCcEEEEEECChH-----------HHHHHHhhhhhccCCCCCCC--eEEEEcc
Q 019699          102 NPKTIFIMGGGEGSTAR----EILRHKTVEKVVMCDIDEE-----------VVEFCKSYLVVNKEAFSDPR--LELVIND  164 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~----~ll~~~~~~~v~~VEid~~-----------vi~~a~~~f~~~~~~~~d~r--v~v~~~D  164 (337)
                      ..-+||++|.|+|....    ++.+..+..++..+.++..           .-++.+..+... ..+.+.+  ++++.+|
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~-p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERV-PEYEGERLSLKVLLGD  174 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHC-SEEECSSEEEEEEESC
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhC-ccccCCcEEEEEEech
Confidence            44689999999997433    2333344556655544321           122222222110 0122344  4688999


Q ss_pred             HHHHHhhcC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          165 ARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       165 ~~~~l~~~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      +++.+++.. .++|+|+.|.+.|.. .|  .|+|.++|+. ++++++|||++++.+..          ..+.+.|+++-=
T Consensus       175 a~~~l~~l~~~~~Da~flDgFsP~k-NP--eLWs~e~f~~-l~~~~~pgg~laTYtaa----------g~VRR~L~~aGF  240 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDAFSPYK-NP--ELWTLDFLSL-IKERIDEKGYWVSYSSS----------LSVRKSLLTLGF  240 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECCSCTTT-SG--GGGSHHHHHH-HHTTEEEEEEEEESCCC----------HHHHHHHHHTTC
T ss_pred             HHHHHhhhcccceeEEEeCCCCccc-Cc--ccCCHHHHHH-HHHHhCCCcEEEEEeCc----------HHHHHHHHHCCC
Confidence            999998864 489999999998863 44  8999999999 89999999999986521          245677887743


Q ss_pred             ceeEEEeeccccCCceEEEEEecCC--CCCCHHHHHHHHHhccCCCceeeCHH
Q 019699          244 YVVPYSAHIPSFADTWGWIMASDSP--FTLSAEELDMKVKKNIKGENRYLDGK  294 (337)
Q Consensus       244 ~v~~~~~~vP~~~~~~~~~~as~~p--~~~~~~~l~~r~~~~~~~~l~yy~~~  294 (337)
                      .|.    .+|.+++-..+++|+..+  .++.....+ ++... ....-|.|+.
T Consensus       241 ~V~----k~~G~g~KReml~A~~~~~~~pl~~~~~~-~~~~s-~aaiPyRDp~  287 (308)
T 3vyw_A          241 KVG----SSREIGRKRKGTVASLKAPVPPMEENEVR-KLVLS-PFAVPMRDEK  287 (308)
T ss_dssp             EEE----EEECC---CEEEEEESSSCCCCCCHHHHH-HHHHC-TTCCCCCCSS
T ss_pred             EEE----ecCCCCCCCceeEEecCCCCCCCChHHHH-HHhcC-CCeeeCcCCC
Confidence            343    356677666789999754  245544433 33211 2234455553

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.85  E-value=4.9e-09  Score=100.58  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+++||+||||+|..+..+++..+..+++++|+ |.+++.|++.+....   ..+|++++.+|..+.-...++.||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~p~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS---GSERIHGHGANLLDRDVPFPTGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT---TGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC---cccceEEEEccccccCCCCCCCcCEEE
Confidence            4678999999999999999998877789999999 999999999875421   136899999997653001236899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       254 ~~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          254 MSQFLDC--FS--EEEVISILTR-VAQSIGKDSKVYIM  286 (363)
T ss_dssp             EESCSTT--SC--HHHHHHHHHH-HHHHCCTTCEEEEE
T ss_pred             Eechhhh--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8654221  01  0012467888 79999999988764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.85  E-value=1.8e-08  Score=96.76  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|..+..+++..+..+++++|+ +.+++.|++.+....   -.+|++++.+|..+   ..+..||+|+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~---~~p~~~D~v~  273 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG---LADRCEILPGDFFE---TIPDGADVYL  273 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTT---CCCSSCSEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC---cCCceEEeccCCCC---CCCCCceEEE
Confidence            5678999999999999999999877789999999 999999999876432   14789999999863   2234799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       274 ~~~vlh~--~~--d~~~~~~L~~-~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          274 IKHVLHD--WD--DDDVVRILRR-IATAMKPDSRLLVI  306 (369)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEE
T ss_pred             hhhhhcc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            8754211  01  0111358898 89999999988774

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.85  E-value=1.1e-08  Score=96.68  Aligned_cols=107  Identities=9%  Similarity=0.042  Sum_probs=81.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||+||||+|..+..+++..+..+++++|+ |.+++.|++++....   -.+|++++.+|..+   ..+..||+|+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~---~~p~~~D~v~  240 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG---LSGRAQVVVGSFFD---PLPAGAGGYV  240 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCCCSCSEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC---cCcCeEEecCCCCC---CCCCCCcEEE
Confidence            3468999999999999999998877789999999 999999999876432   14789999999763   2234899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +-..-..  -+  .-....+++. +++.|+|||.+++..
T Consensus       241 ~~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          241 LSAVLHD--WD--DLSAVAILRR-CAEAAGSGGVVLVIE  274 (332)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred             Eehhhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence            8654211  01  0012568898 799999999887753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.84  E-value=6.5e-09  Score=94.59  Aligned_cols=99  Identities=17%  Similarity=0.263  Sum_probs=75.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +++.+||+||||+|..+..+++.  ..++++||+++.+++.|++...        .  .++.+|+.+. .-..++||+|+
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~--------~--~~~~~d~~~~-~~~~~~fD~v~  119 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAEDL-PFPSGAFEAVL  119 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC--------C--CEEECcHHHC-CCCCCCEEEEE
Confidence            47789999999999999999886  3689999999999999998643        1  1778887653 22347899999


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +... ...  .+  .  ...+++. +++.|+|||.+++..
T Consensus       120 ~~~~~~~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          120 ALGDVLSY--VE--N--KDKAFSE-IRRVLVPDGLLIATV  152 (260)
T ss_dssp             ECSSHHHH--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Ecchhhhc--cc--c--HHHHHHH-HHHHcCCCeEEEEEe
Confidence            8642 111  01  1  3578888 799999999998865

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.84  E-value=1e-08  Score=100.90  Aligned_cols=109  Identities=11%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHH-------HhhhhhccCCCCCCCeEEEEccHHH---HH
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARA---EL  169 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a-------~~~f~~~~~~~~d~rv~v~~~D~~~---~l  169 (337)
                      ..++.+||+||||+|.++..+++..+..+|++||+++.+++.|       ++.+....  +.-.+++++.+|+..   .+
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~gD~~~~~~~~  317 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLKKSFVDNNRV  317 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEESSCSTTCHHH
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEcCcccccccc
Confidence            3567899999999999999999875567899999999999999       66654321  112689999987642   12


Q ss_pred             hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ....++||+|+++.+- .  .+  .  -...++. +.+.|+|||.+++.
T Consensus       318 ~~~~~~FDvIvvn~~l-~--~~--d--~~~~L~e-l~r~LKpGG~lVi~  358 (433)
T 1u2z_A          318 AELIPQCDVILVNNFL-F--DE--D--LNKKVEK-ILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHGGGCSEEEECCTT-C--CH--H--HHHHHHH-HHTTCCTTCEEEES
T ss_pred             ccccCCCCEEEEeCcc-c--cc--c--HHHHHHH-HHHhCCCCeEEEEe
Confidence            2223679999986431 1  11  1  1345677 78999999999875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.84  E-value=1.4e-08  Score=93.58  Aligned_cols=103  Identities=11%  Similarity=0.082  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-HHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-~l~~~~~~yDv  178 (337)
                      ..++.+||+||||+|.++..+++.  ..+|++||+++.+++.|++.....       .++....|... ......++||+
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~  113 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDF  113 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSE
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccE
Confidence            356789999999999999999986  368999999999999999976431       23333333211 01122468999


Q ss_pred             EEEeCCCCCCCCCCcCCc---hHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~---t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++..-.       ++.   ...+++. +.++| |||.+++...
T Consensus       114 Vv~~~~l~-------~~~~~~~~~~l~~-l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          114 VLNDRLIN-------RFTTEEARRACLG-MLSLV-GSGTVRASVK  149 (261)
T ss_dssp             EEEESCGG-------GSCHHHHHHHHHH-HHHHH-TTSEEEEEEE
T ss_pred             EEEhhhhH-------hCCHHHHHHHHHH-HHHhC-cCcEEEEEec
Confidence            99986421       221   2347777 68899 9999998763

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.83  E-value=1.2e-08  Score=97.60  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..+..+++++|+ +.+++.|++.+....   -.++++++.+|..+.+   +..||+|+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  253 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKPL---PVTADVVL  253 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCcC---CCCCCEEE
Confidence            4568999999999999999998876779999999 999999999875432   1358999999986533   34599999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       254 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  286 (374)
T 1qzz_A          254 LSFVLLN--WS--DEDALTILRG-CVRALEPGGRLLVL  286 (374)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EeccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8754211  01  0011368898 79999999977754

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.82  E-value=8e-09  Score=98.13  Aligned_cols=107  Identities=12%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +.+||+||||+|..+..+++..+..+++++|+ +.+++.+++++....   ..+|++++.+|..+.-...++.||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD---LGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC---CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            78999999999999999999877789999999 899999999876432   13689999999876431134669999986


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ..-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       256 ~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          256 DCLHY--FD--AREAREVIGH-AAGLVKPGGALLIL  286 (352)
T ss_dssp             SCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ccccc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            54211  01  0012578888 79999999988764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.80  E-value=1.1e-08  Score=90.79  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=74.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCC-CCCCeEEEEccHHH-------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-SDPRLELVINDARA-------------  167 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-~d~rv~v~~~D~~~-------------  167 (337)
                      ++++||+||+|  ..+..+++.. ..+|+.||.|++..+.|+++|....  + ...+++++.+|+.+             
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g--~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANP--PAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSC--CCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCCceEEEEeCchhhhcccccccchhh
Confidence            67899999985  5677777653 6899999999999999999997542  1 13589999999643             


Q ss_pred             -----HHh---hc--CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          168 -----ELE---SR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       168 -----~l~---~~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                           +..   +.  .+.||+|++|...           ..+++.. +.+.|+|||++++.
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----------~~~~~~~-~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-----------RVGCALA-TAFSITRPVTLLFD  153 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSS-----------HHHHHHH-HHHHCSSCEEEEET
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCC-----------chhHHHH-HHHhcCCCeEEEEe
Confidence                 321   12  2689999999731           1255555 46899999999874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.80  E-value=9.1e-09  Score=93.77  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+.+||+||||+|..+..+++..+..+++++|+++.+++.|++..         ++++++.+|+.+. ....++||+|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC-CCCCCceeEEE
Confidence            4678999999999999999998755579999999999999998863         4678899997643 22346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...      +       .+++. +.+.|+|||.+++..
T Consensus       154 ~~~~------~-------~~l~~-~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          154 RIYA------P-------CKAEE-LARVVKPGGWVITAT  178 (269)
T ss_dssp             EESC------C-------CCHHH-HHHHEEEEEEEEEEE
T ss_pred             EeCC------h-------hhHHH-HHHhcCCCcEEEEEE
Confidence            7532      1       13566 688999999988765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.80  E-value=1.3e-09  Score=98.58  Aligned_cols=115  Identities=11%  Similarity=0.090  Sum_probs=79.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC-------------------------C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------D  155 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-------------------------d  155 (337)
                      .++++||+||||+|..+..+++... .+|+++|+++.+++.|++.+......++                         .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3457999999999999988887643 5899999999999999998753210000                         0


Q ss_pred             CCe-EEEEccHHHHHhhcC---CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          156 PRL-ELVINDARAELESRK---ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       156 ~rv-~v~~~D~~~~l~~~~---~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .++ +++.+|..+......   ++||+|++...-..  .+...-.-..+++. +.++|+|||.+++..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~--~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  198 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA--ACPDLPAYRTALRN-LGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh--hcCChHHHHHHHHH-HHhhCCCCcEEEEEe
Confidence            127 899999876432123   78999998754110  00000012467888 799999999988753

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.79  E-value=2.4e-08  Score=91.04  Aligned_cols=110  Identities=12%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChH------HHHHHHhhhhhccCCCCCCCeEEEEcc-HHHH-Hh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE------VVEFCKSYLVVNKEAFSDPRLELVIND-ARAE-LE  170 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~------vi~~a~~~f~~~~~~~~d~rv~v~~~D-~~~~-l~  170 (337)
                      ..++.+||+||||+|..+..++++. +..+|+++|+++.      +++.|++.+....   ..++++++.+| .... +.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~  117 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---LGDRLTVHFNTNLSDDLGP  117 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST---TGGGEEEECSCCTTTCCGG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC---CCCceEEEECChhhhccCC
Confidence            3567899999999999999999873 4579999999997      8999999875421   13689999998 2111 11


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      -..++||+|++...-.....      ...+.+. +++.++|||.+++..
T Consensus       118 ~~~~~fD~v~~~~~l~~~~~------~~~~~~~-~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          118 IADQHFDRVVLAHSLWYFAS------ANALALL-FKNMAAVCDHVDVAE  159 (275)
T ss_dssp             GTTCCCSEEEEESCGGGSSC------HHHHHHH-HHHHTTTCSEEEEEE
T ss_pred             CCCCCEEEEEEccchhhCCC------HHHHHHH-HHHHhCCCCEEEEEE
Confidence            13478999998764221001      1235665 667777799888754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.79  E-value=1.1e-08  Score=99.20  Aligned_cols=123  Identities=21%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      +.+.+||++|||+|.++..++++. +..++++||+|+.+++.|             ++++++.+|...+..  .++||+|
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~~~--~~~fD~I  102 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLWEP--GEAFDLI  102 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGCCC--SSCEEEE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhcCc--cCCCCEE
Confidence            456799999999999999999863 457999999999988766             478999999887632  3689999


Q ss_pred             EEeCCCCCCCCC-------CcC---C-------------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH
Q 019699          180 IGDLADPIEGGP-------CYK---L-------------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (337)
Q Consensus       180 i~D~~dp~~~~p-------~~~---L-------------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~  236 (337)
                      +++++-......       ...   .             .-..|++. +.+.|+|||.+++-....  +........+.+
T Consensus       103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~~G~~~~i~p~~--~l~~~~~~~lr~  179 (421)
T 2ih2_A          103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVPAT--WLVLEDFALLRE  179 (421)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEEGG--GGTCGGGHHHHH
T ss_pred             EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHH-HHHHhCCCCEEEEEEChH--HhcCccHHHHHH
Confidence            999863211010       000   0             11268888 789999999887754221  332333445555


Q ss_pred             HHhhh
Q 019699          237 TLRQV  241 (337)
Q Consensus       237 ~l~~v  241 (337)
                      .+.+.
T Consensus       180 ~l~~~  184 (421)
T 2ih2_A          180 FLARE  184 (421)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.78  E-value=4.9e-08  Score=93.16  Aligned_cols=107  Identities=11%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||+|..+..+++..+..+++++|+ +.+++.|++.+....   -.+|++++.+|..+.   ....+|+|
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v  260 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAV  260 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CTTTEEEEECCTTTS---CCCCCSEE
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC---CCCCEEEEeCccccC---CCCCCCEE
Confidence            35678999999999999999999877789999999 999999999876432   135799999998654   12345999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       261 ~~~~vlh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~  294 (359)
T 1x19_A          261 LFCRILYS--AN--EQLSTIMCKK-AFDAMRSGGRLLIL  294 (359)
T ss_dssp             EEESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEE
T ss_pred             EEechhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            98754211  01  0113578888 79999999988654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.78  E-value=1.9e-08  Score=95.85  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..+..+++++|+ +.+++.|++.+....   -.++++++.+|..+.+   +..||+|+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~  254 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEPL---PRKADAII  254 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SSCEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCCC---CCCccEEE
Confidence            4568999999999999999998876778999999 999999999876432   1358999999986533   34599999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       255 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          255 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIH  287 (360)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EcccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence            8754211  01  0011468898 79999999987764

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.78  E-value=2.4e-08  Score=95.02  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCC-----cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTV-----EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~-----~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      .+.+||++|||+|+++..++++.+.     .+++++|+|+.++++|+..+....     .+++++.+|.....  ..++|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~~~~i~~~D~l~~~--~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLANL--LVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSCC--CCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----CCceEEECCCCCcc--ccCCc
Confidence            4579999999999999988876422     689999999999999999876542     26899999986532  24689


Q ss_pred             eEEEEeCCCCCCC--------C---CCcC-CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          177 DVIIGDLADPIEG--------G---PCYK-LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       177 DvIi~D~~dp~~~--------~---p~~~-L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      |+|+++++-....        .   +... .+...|++. +.+.|+|||.+++-....  +........+.+.|.+.+
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~-~~~~Lk~gG~~~~v~p~~--~~~~~~~~~ir~~l~~~~  277 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLVPDA--MFGTSDFAKVDKFIKKNG  277 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEEEGG--GGGSTTHHHHHHHHHHHE
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHH-HHHHhCCCCEEEEEECch--hcCCchHHHHHHHHHhCC
Confidence            9999998721100        0   0001 122368888 789999999887654222  223333455556665543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.78  E-value=5.3e-09  Score=101.69  Aligned_cols=97  Identities=19%  Similarity=0.308  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecc-------hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHh-
Q 019699          101 PNPKTIFIMGGG-------EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELE-  170 (337)
Q Consensus       101 ~~p~~VLiIG~G-------~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~-  170 (337)
                      .++.+||+||||       +|.+...+.++++..+|++||+++++.        .     ..++++++.+|+.+  |+. 
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-----~~~rI~fv~GDa~dlpf~~~  281 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-----DELRIRTIQGDQNDAEFLDR  281 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-----CBTTEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-----cCCCcEEEEecccccchhhh
Confidence            567999999999       455444444455678999999999862        0     24799999999865  441 


Q ss_pred             --hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          171 --SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       171 --~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                        ...++||+|++|.....     .  -...+|+. +.++|+|||++++.
T Consensus       282 l~~~d~sFDlVisdgsH~~-----~--d~~~aL~e-l~rvLKPGGvlVi~  323 (419)
T 3sso_A          282 IARRYGPFDIVIDDGSHIN-----A--HVRTSFAA-LFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHCCEEEEEECSCCCH-----H--HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred             hhcccCCccEEEECCcccc-----h--hHHHHHHH-HHHhcCCCeEEEEE
Confidence              12378999999864211     0  12468888 89999999999985

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.78  E-value=8.9e-09  Score=102.76  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.++..++++ +..+|++||+++ +++.|++.+..+.  + .++++++.+|..++  ..+++||+|+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~g--l-~~~v~~~~~d~~~~--~~~~~fD~Iv  229 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN--L-TDRIVVIPGKVEEV--SLPEQVDIII  229 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTT--C-TTTEEEEESCTTTC--CCSSCEEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcC--C-CCcEEEEECchhhC--ccCCCeEEEE
Confidence            35689999999999999999885 467999999999 8899998876432  1 36899999998764  2246899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++.....  ....  -..+.+.. +++.|+|||++++..
T Consensus       230 s~~~~~~--~~~e--~~~~~l~~-~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          230 SEPMGYM--LFNE--RMLESYLH-AKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CCCCHHH--HTCH--HHHHHHHH-GGGGEEEEEEEESCE
T ss_pred             EeCchHh--cCcH--HHHHHHHH-HHHhcCCCCEEEEEe
Confidence            9754110  0000  11356666 789999999998543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.76  E-value=7.2e-08  Score=94.78  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||++|||+|.++..+++.  ..+|++||+++.+++.|+++...+.    -+ ++++.+|+.+++..   +||+|+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng----l~-v~~~~~d~~~~~~~---~fD~Vv  358 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN----VD-AEFEVASDREVSVK---GFDTVI  358 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CC-EEEEECCTTTCCCT---TCSEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChHHcCcc---CCCEEE
Confidence            46689999999999999999886  4689999999999999999887542    13 99999999887643   799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++..   +     ...++.+. +. .|+|+|++.+.+
T Consensus       359 ~dPPr~---g-----~~~~~~~~-l~-~l~p~givyvsc  387 (425)
T 2jjq_A          359 VDPPRA---G-----LHPRLVKR-LN-REKPGVIVYVSC  387 (425)
T ss_dssp             ECCCTT---C-----SCHHHHHH-HH-HHCCSEEEEEES
T ss_pred             EcCCcc---c-----hHHHHHHH-HH-hcCCCcEEEEEC
Confidence            997621   2     12456676 44 599999998875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.76  E-value=1.3e-08  Score=95.58  Aligned_cols=106  Identities=14%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|..+..+++..+..+++++|++ .+++.|++.+....   -.+|++++.+|..+.  ..++.||+|+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~~D~v~  237 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG---VASRYHTIAGSAFEV--DYGNDYDLVL  237 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT---CGGGEEEEESCTTTS--CCCSCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC---CCcceEEEecccccC--CCCCCCcEEE
Confidence            56789999999999999999988767899999999 99999999875431   135799999998653  2234599999


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +... ..+   +  .-....+++. +++.|+|||.+++.
T Consensus       238 ~~~~l~~~---~--~~~~~~~l~~-~~~~L~pgG~l~i~  270 (335)
T 2r3s_A          238 LPNFLHHF---D--VATCEQLLRK-IKTALAVEGKVIVF  270 (335)
T ss_dssp             EESCGGGS---C--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EcchhccC---C--HHHHHHHHHH-HHHhCCCCcEEEEE
Confidence            8543 111   0  0112478888 79999999976654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.74  E-value=1.2e-08  Score=96.26  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL  183 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~  183 (337)
                      .+||+||||+|..+..+++..+..+++++|+ +.+++.|++.+....   -.+|++++.+|..+.   .++.||+|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---AGERVSLVGGDMLQE---VPSNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH---HTTSEEEEESCTTTC---CCSSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC---CCCcEEEecCCCCCC---CCCCCCEEEEch
Confidence            8999999999999999998877789999999 999999999875321   136899999998662   346799999875


Q ss_pred             CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       242 vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          242 IIGD--LD--EAASLRLLGN-CREAMAGDGRVVVI  271 (334)
T ss_dssp             CGGG--CC--HHHHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             hccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            4211  01  0012378888 79999999988775

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.73  E-value=2.4e-08  Score=93.41  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=81.3

Q ss_pred             eEEEEcCcc-ccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh
Q 019699           70 KALVIDGKL-QSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (337)
Q Consensus        70 ~~L~lDG~~-q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~  148 (337)
                      ..+.++|.. ....+..+...+++....  .....++|||||||+|.++..++++ +..+|++||+++.+++.+.+.   
T Consensus        54 d~I~v~g~~~~yvsrg~~Kl~~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---  127 (291)
T 3hp7_A           54 TELKLKGEKLRYVSRGGLKLEKALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---  127 (291)
T ss_dssp             CCEEETTCCCCSSSTTHHHHHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT---
T ss_pred             CEEEEcccccccccchHHHHHHHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---
Confidence            345666653 222333333344443322  2345679999999999999999887 567999999999999885442   


Q ss_pred             ccCCCCCCCeEEEE-ccHHHHHhh--cC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          149 NKEAFSDPRLELVI-NDARAELES--RK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       149 ~~~~~~d~rv~v~~-~D~~~~l~~--~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                            ++|+.... .|.+ ++..  .+ ..||+|++|.....       +  ...+.. +++.|+|||.+++-
T Consensus       128 ------~~rv~~~~~~ni~-~l~~~~l~~~~fD~v~~d~sf~s-------l--~~vL~e-~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          128 ------DDRVRSMEQYNFR-YAEPVDFTEGLPSFASIDVSFIS-------L--NLILPA-LAKILVDGGQVVAL  184 (291)
T ss_dssp             ------CTTEEEECSCCGG-GCCGGGCTTCCCSEEEECCSSSC-------G--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             ------CcccceecccCce-ecchhhCCCCCCCEEEEEeeHhh-------H--HHHHHH-HHHHcCcCCEEEEE
Confidence                  45654443 2333 2221  12 34999999975321       1  356677 78999999988763

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.73  E-value=1.9e-08  Score=88.95  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +.+||+||||+|..+..+++.      +++|+++.+++.+++.           +++++.+|+... ....++||+|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccC-CCCCCCeeEEEEc
Confidence            789999999999999988764      9999999999999874           578888887553 2234689999987


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..-..  .+    -...+++. +.+.|+|||.+++..
T Consensus       110 ~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          110 TTICF--VD----DPERALKE-AYRILKKGGYLIVGI  139 (219)
T ss_dssp             SCGGG--SS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             chHhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence            54211  11    12578888 799999999988764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.73  E-value=1.1e-07  Score=91.62  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=75.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC--------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--------  173 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~--------  173 (337)
                      .+.+||++|||+|.++..+++.  ..+|++||+++.+++.|+++...+.    -++++++.+|+.+++....        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCHHHHHHHHhhccccccc
Confidence            3578999999999999988874  4699999999999999999987643    2589999999999875422        


Q ss_pred             -------CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          174 -------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       174 -------~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                             .+||+|++|++..   +    + ..++.     +.|+++|.++.-+
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~---g----~-~~~~~-----~~l~~~g~ivyvs  326 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRS---G----L-DSETE-----KMVQAYPRILYIS  326 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTT---C----C-CHHHH-----HHHTTSSEEEEEE
T ss_pred             cccccccCCCCEEEECcCcc---c----c-HHHHH-----HHHhCCCEEEEEE
Confidence                   2799999997532   1    1 12333     3455777776554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.70  E-value=1.8e-09  Score=98.79  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC-------------------------CC
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------DP  156 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-------------------------d~  156 (337)
                      +..+||+||||+|..+..+++. +..+|+++|+++.+++.|++++......++                         ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4578999999999777665554 346899999999999999998643211111                         01


Q ss_pred             CeE-EEEccHHHHHh---hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          157 RLE-LVINDARAELE---SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       157 rv~-v~~~D~~~~l~---~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++ ++.+|..+...   ....+||+|++...-... .+... --...++. +.++|+|||.|++..
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i-~~~~~-~~~~~l~~-i~r~LKPGG~li~~~  197 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA-CCSLD-AYRAALCN-LASLLKPGGHLVTTV  197 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH-CSSHH-HHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHh-cCCHH-HHHHHHHH-HHHHcCCCcEEEEEE
Confidence            243 78888765311   124689999998642110 00000 01356777 789999999998763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.70  E-value=1.1e-07  Score=93.53  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      ....+||++|||+|.++..+++.  ..+|++||+++.+++.|+++...+.    -++++++.+|+.+++..   ..++||
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHHHHhhhhhhhcCCCC
Confidence            45679999999999999999986  5799999999999999999886542    24899999999886543   246799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++|++..   +    +  .++.+. +. .++|++++.+.+
T Consensus       359 ~Vv~dPPr~---g----~--~~~~~~-l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          359 KVLLDPARA---G----A--AGVMQQ-II-KLEPIRIVYVSC  389 (433)
T ss_dssp             EEEECCCTT---C----C--HHHHHH-HH-HHCCSEEEEEES
T ss_pred             EEEECCCCc---c----H--HHHHHH-HH-hcCCCeEEEEEC
Confidence            999997532   1    1  256665 43 478999887764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.69  E-value=1.2e-07  Score=87.70  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEEC-ChHHHHHHHhhhhhcc---CCCC---CCCeEEEE---ccHH-HHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI-DEEVVEFCKSYLVVNK---EAFS---DPRLELVI---NDAR-AEL  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEi-d~~vi~~a~~~f~~~~---~~~~---d~rv~v~~---~D~~-~~l  169 (337)
                      ..+++||+||||+|.++..+++. +..+|+++|+ ++.+++.|+++...+.   ..+.   .++++++.   +|.. ...
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            35679999999999999988886 3469999999 9999999999873321   0111   14788874   3322 222


Q ss_pred             hh-cCCceeEEEE-eCCCCCCCCCCcCCchHHHHHHHhccccC---C--CceEEEe
Q 019699          170 ES-RKESYDVIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLN---P--EGIFVTQ  218 (337)
Q Consensus       170 ~~-~~~~yDvIi~-D~~dp~~~~p~~~L~t~ef~~~~~~~~L~---p--~Gvlv~~  218 (337)
                      .. ..++||+|++ |.....       -.-..+++. +++.|+   |  ||++++-
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~-------~~~~~ll~~-l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFH-------QAHDALLRS-VKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCG-------GGHHHHHHH-HHHHBCCTTTCTTCEEEEE
T ss_pred             hhccCCCCCEEEEeCcccCh-------HHHHHHHHH-HHHHhcccCCCCCCEEEEE
Confidence            21 2478999987 554211       113467887 789999   9  9976543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.68  E-value=6.7e-08  Score=101.09  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhc--cCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVN--KEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~--~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+.+||+||||+|.++..++++. +..+|++||+++.+++.|++.+...  .....-++++++.+|+.++ ....+.||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCee
Confidence            467899999999999999999875 4579999999999999999865421  1111236899999998764 23357899


Q ss_pred             EEEEeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++...-       .++-.   ..|++. +.+.|+|| .+++.
T Consensus       799 lVV~~eVL-------eHL~dp~l~~~L~e-I~RvLKPG-~LIIS  833 (950)
T 3htx_A          799 IGTCLEVI-------EHMEEDQACEFGEK-VLSLFHPK-LLIVS  833 (950)
T ss_dssp             EEEEESCG-------GGSCHHHHHHHHHH-HHHTTCCS-EEEEE
T ss_pred             EEEEeCch-------hhCChHHHHHHHHH-HHHHcCCC-EEEEE
Confidence            99996431       23332   247888 79999999 55543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.68  E-value=3.3e-07  Score=86.36  Aligned_cols=115  Identities=15%  Similarity=0.057  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ..+..+|||+|+|.|+.+..+++. .+..+|+++|+++..++.+++++....    -.+++++.+|+.++....  ..+|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCChHhcCccccccCCC
Confidence            345679999999999999998875 345799999999999999999986532    257999999998764321  1579


Q ss_pred             eEEEEeCCCCCCC----CCC---------cCC-----chHHHHHHHhccccCCCceEEEeCC
Q 019699          177 DVIIGDLADPIEG----GPC---------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       177 DvIi~D~~dp~~~----~p~---------~~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |.|++|++-....    .|.         ..+     ...++++. +.+.|+ +|.++..+.
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-ALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHH-HTTCTT-CCEEEEEES
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHH-HHhccC-CCEEEEECC
Confidence            9999998731110    010         010     11346666 566776 898886553

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.67  E-value=6.5e-09  Score=96.03  Aligned_cols=113  Identities=14%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC------------C-------------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------------D-------------  155 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------------d-------------  155 (337)
                      .++.+||+||||+|.+...+.+. ...+|++||+++.+++.|++++......++            .             
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            36689999999999954433332 346999999999999999986542110000            0             


Q ss_pred             -CCeEEEEccHHHHHh-----hcCCceeEEEEeCCCCCCCCCCcCC-chHHHHHHHhccccCCCceEEEe
Q 019699          156 -PRLELVINDARAELE-----SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       156 -~rv~v~~~D~~~~l~-----~~~~~yDvIi~D~~dp~~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       ..++++..|+.+.+.     ..+++||+|++...-..  .+ ..+ --..+++. ++++|+|||.|++.
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~-~~~~~~~~~l~~-~~r~LkpGG~l~~~  214 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VS-PDLASFQRALDH-ITTLLRPGGHLLLI  214 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HC-SSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh--hc-CCHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence             125677778766332     11356999999864211  00 001 12468888 79999999998874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.64  E-value=3e-08  Score=93.32  Aligned_cols=126  Identities=12%  Similarity=0.022  Sum_probs=83.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEEC----ChHHHHHHHhhhhhccCCCCCCCeEEEEc-cHHHHHhhcCCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEi----d~~vi~~a~~~f~~~~~~~~d~rv~v~~~-D~~~~l~~~~~~  175 (337)
                      .+..+|||||||+|+++..+++.   .+|++||+    ++..++.+    ..  .....++++++.+ |...+   ..++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~----~~--~~~~~~~v~~~~~~D~~~l---~~~~  148 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI----PM--STYGWNLVRLQSGVDVFFI---PPER  148 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC----CC--CSTTGGGEEEECSCCTTTS---CCCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH----Hh--hhcCCCCeEEEeccccccC---CcCC
Confidence            44579999999999999999886   47999999    44332211    11  1112367999998 87653   2468


Q ss_pred             eeEEEEeCCCCCCCCCCcCCc----hHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          176 YDVIIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~----t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      ||+|++|.....  +-  ...    +...++. +.+.|+|||.|++..-.+    .......++..++..|..+..
T Consensus       149 fD~V~sd~~~~~--g~--~~~d~~~~l~~L~~-~~~~LkpGG~~v~kv~~~----~~~~~~~~l~~l~~~f~~v~~  215 (305)
T 2p41_A          149 CDTLLCDIGESS--PN--PTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP----YMSSVIEKMEALQRKHGGALV  215 (305)
T ss_dssp             CSEEEECCCCCC--SS--HHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEE
T ss_pred             CCEEEECCcccc--Cc--chhhHHHHHHHHHH-HHHHhCCCCEEEEEeCCC----CCchHHHHHHHHHHHcCCEEE
Confidence            999999975321  11  111    1146776 689999999999875322    123345667788888887653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.63  E-value=1.2e-08  Score=94.79  Aligned_cols=148  Identities=11%  Similarity=-0.053  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE--EccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~--~~D~~~~l~~~~~~yDv  178 (337)
                      .+..+|||||||+|.++..+++.   .+|++||+++ ++..+++. +..... .+.+++++  .+|+.++ .  +++||+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l-~--~~~fD~  151 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-PRLVET-FGWNLITFKSKVDVTKM-E--PFQADT  151 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-CCCCCC-TTGGGEEEECSCCGGGC-C--CCCCSE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-hhhhhh-cCCCeEEEeccCcHhhC-C--CCCcCE
Confidence            45679999999999999999886   5799999999 43333221 110000 11268899  8998763 2  578999


Q ss_pred             EEEeCCCCCCCCCC-cCCchHHHHHHHhccccCCCc--eEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~G--vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      |++|.. .....+. ...-+..+++. +.+.|+|||  .+++..-.|   .. .....+++.++..|..+..+    |.+
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~~v~~~~~~---~~-~~~~~~l~~l~~~f~~v~v~----P~~  221 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNV-ISRWLEYNQGCGFCVKVLNP---YS-CDVLEALMKMQARFGGGLIR----VPL  221 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHSTTCEEEEEESCC---CS-HHHHHHHHHHHHHHCCEEEC----CTT
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHH-HHHHhccCCCcEEEEEeCCC---Cc-hhHHHHHHHHHHHcCCEEEE----cCC
Confidence            999976 2210110 00001136776 789999999  888865333   12 22335567788888877653    443


Q ss_pred             C---CceEEEEEecC
Q 019699          256 A---DTWGWIMASDS  267 (337)
Q Consensus       256 ~---~~~~~~~as~~  267 (337)
                      .   ....++++...
T Consensus       222 sR~~s~E~y~v~~~~  236 (276)
T 2wa2_A          222 SRNSTHEMYFVSGIK  236 (276)
T ss_dssp             SCTTCCCEEEESSCC
T ss_pred             CCCcchheEEecccC
Confidence            2   13445666543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.61  E-value=2.4e-08  Score=97.17  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..++++.  .++++||+++.+++.|++.. ..      ....++..+..+.+....++||+|+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~-~~------~~~~~~~~~~~~~l~~~~~~fD~I~  176 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKG-IR------VRTDFFEKATADDVRRTEGPANVIY  176 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTT-CC------EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcC-CC------cceeeechhhHhhcccCCCCEEEEE
Confidence            456799999999999999999863  58999999999999999861 10      1111222233333433357899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  -+    .-..+++. ++++|+|||++++..
T Consensus       177 ~~~vl~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          177 AANTLCH--IP----YVQSVLEG-VDALLAPDGVFVFED  208 (416)
T ss_dssp             EESCGGG--CT----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             ECChHHh--cC----CHHHHHHH-HHHHcCCCeEEEEEe
Confidence            9865221  11    23578998 899999999998863

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.61  E-value=3.5e-07  Score=84.78  Aligned_cols=112  Identities=15%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             CCCCeEEEEecch--hHHHHHHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---Hhhc--
Q 019699          101 PNPKTIFIMGGGE--GSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~--G~~~~~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~--  172 (337)
                      ...++||+||||.  ++...++++ ..+..+|+.||+||.|++.||+.+...    ...+++++.+|.++.   +...  
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~----~~~~~~~v~aD~~~~~~~l~~~~~  152 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST----PEGRTAYVEADMLDPASILDAPEL  152 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC----SSSEEEEEECCTTCHHHHHTCHHH
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC----CCCcEEEEEecccChhhhhccccc
Confidence            3568999999996  333444443 456789999999999999999987532    135799999999875   2111  


Q ss_pred             CCcee-----EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          173 KESYD-----VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       173 ~~~yD-----vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .+.||     .|++...-++  -+. .---...++. +.+.|+|||.|++...
T Consensus       153 ~~~~D~~~p~av~~~avLH~--l~d-~~~p~~~l~~-l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          153 RDTLDLTRPVALTVIAIVHF--VLD-EDDAVGIVRR-LLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             HTTCCTTSCCEEEEESCGGG--SCG-GGCHHHHHHH-HHTTSCTTCEEEEEEE
T ss_pred             ccccCcCCcchHHhhhhHhc--CCc-hhhHHHHHHH-HHHhCCCCcEEEEEec
Confidence            24465     4666654333  110 0001467787 7899999999988753

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.60  E-value=1.1e-07  Score=90.57  Aligned_cols=103  Identities=19%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +...+||+||||+|..+..+++..+..+++++|+ +.++.  ++......   ..+|++++.+|..+   ..+ .||+|+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~---~~~~v~~~~~d~~~---~~p-~~D~v~  252 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD---VAGRWKVVEGDFLR---EVP-HADVHV  252 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG---GTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC---CCCCeEEEecCCCC---CCC-CCcEEE
Confidence            5678999999999999999999877789999999 55655  43332111   24689999999862   233 899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....+++. +++.|+|||.+++.
T Consensus       253 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkpgG~l~i~  285 (348)
T 3lst_A          253 LKRILHN--WG--DEDSVRILTN-CRRVMPAHGRVLVI  285 (348)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             EehhccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8754211  01  0111478898 79999999988774

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.59  E-value=1.6e-08  Score=93.23  Aligned_cols=130  Identities=12%  Similarity=-0.007  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE--EccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~--~~D~~~~l~~~~~~yDv  178 (337)
                      .+..+|||||||+|+++..++++   .+|++||+++ ++..+++. +.....+ +.+++++  .+|+.++ .  +++||+
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~~~~-~~~v~~~~~~~D~~~l-~--~~~fD~  143 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRITESY-GWNIVKFKSRVDIHTL-P--VERTDV  143 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCCCBT-TGGGEEEECSCCTTTS-C--CCCCSE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhhhcc-CCCeEEEecccCHhHC-C--CCCCcE
Confidence            45679999999999999999886   5799999999 43222211 1100001 1268888  8898763 2  578999


Q ss_pred             EEEeCCCCCCCCCCcCCc----hHHHHHHHhccccCCCc--eEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          179 IIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~----t~ef~~~~~~~~L~p~G--vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      |++|.. ..  .+ ....    +...++. +.+.|+|||  .+++..-.|    .......++..++..|..+...
T Consensus       144 V~sd~~-~~--~~-~~~~d~~~~l~~L~~-~~r~LkpGG~~~fv~kv~~~----~~~~~~~~l~~l~~~f~~v~~~  210 (265)
T 2oxt_A          144 IMCDVG-ES--SP-KWSVESERTIKILEL-LEKWKVKNPSADFVVKVLCP----YSVEVMERLSVMQRKWGGGLVR  210 (265)
T ss_dssp             EEECCC-CC--CS-CHHHHHHHHHHHHHH-HHHHHHHCTTCEEEEEESCT----TSHHHHHHHHHHHHHHCCEEEC
T ss_pred             EEEeCc-cc--CC-ccchhHHHHHHHHHH-HHHHhccCCCeEEEEEeCCC----CChhHHHHHHHHHHHcCCEEEE
Confidence            999976 22  11 1111    1136776 789999999  888865333    1122335667788888876544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.59  E-value=2.2e-07  Score=86.75  Aligned_cols=134  Identities=15%  Similarity=0.248  Sum_probs=82.8

Q ss_pred             CCCCeEEEEec------chhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE-EEccHHHHHhhc
Q 019699          101 PNPKTIFIMGG------GEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESR  172 (337)
Q Consensus       101 ~~p~~VLiIG~------G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v-~~~D~~~~l~~~  172 (337)
                      ++..+||+|||      |.|+  ..+++. ++..+|++||+++.        .         +++++ +.+|+.+.-  .
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---------~~v~~~i~gD~~~~~--~  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---------SDADSTLIGDCATVH--T  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---------CSSSEEEESCGGGCC--C
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---------CCCEEEEECccccCC--c
Confidence            55679999999      5577  333433 33579999999998        1         35778 999987642  2


Q ss_pred             CCceeEEEEeCCCCCC-----CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699          173 KESYDVIIGDLADPIE-----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV  246 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~-----~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~  246 (337)
                      .++||+|++|...+..     ......-+-.+.++. +.+.|+|||.|++..-..   ..   ...+.+.+++. |..+.
T Consensus       121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~-a~r~LkpGG~~v~~~~~~---~~---~~~l~~~l~~~GF~~v~  193 (290)
T 2xyq_A          121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKITEH---SW---NADLYKLMGHFSWWTAF  193 (290)
T ss_dssp             SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEECSS---SC---CHHHHHHHTTEEEEEEE
T ss_pred             cCcccEEEEcCCccccccccccccchHHHHHHHHHH-HHHhcCCCcEEEEEEecc---CC---HHHHHHHHHHcCCcEEE
Confidence            3679999999753321     000001112467787 789999999999854211   11   23566677777 77665


Q ss_pred             EEEeecccc-CCceEEEEEec
Q 019699          247 PYSAHIPSF-ADTWGWIMASD  266 (337)
Q Consensus       247 ~~~~~vP~~-~~~~~~~~as~  266 (337)
                      ..    .+- .....|++|.+
T Consensus       194 ~~----asr~~s~e~~lv~~~  210 (290)
T 2xyq_A          194 VT----NVNASSSEAFLIGAN  210 (290)
T ss_dssp             EE----GGGTTSSCEEEEEEE
T ss_pred             EE----EcCCCchheEEecCC
Confidence            54    111 22244666654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.59  E-value=1.2e-07  Score=90.63  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +..++||+||||.|..+.++++.+|..++++.|+ |.|++.|+++....    ..+|++++.+|.++   .....+|+|+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~----~~~rv~~~~gD~~~---~~~~~~D~~~  249 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ----EEEQIDFQEGDFFK---DPLPEADLYI  249 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTT---SCCCCCSEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc----ccCceeeecCcccc---CCCCCceEEE
Confidence            3467999999999999999999888889999998 89999999987532    25799999999643   3345689998


Q ss_pred             EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-.. ..+   +.  -.....+++ +++.|+|||.+++.
T Consensus       250 ~~~vlh~~---~d--~~~~~iL~~-~~~al~pgg~lli~  282 (353)
T 4a6d_A          250 LARVLHDW---AD--GKCSHLLER-IYHTCKPGGGILVI  282 (353)
T ss_dssp             EESSGGGS---CH--HHHHHHHHH-HHHHCCTTCEEEEE
T ss_pred             eeeecccC---CH--HHHHHHHHH-HHhhCCCCCEEEEE
Confidence            8654 222   10  012467888 79999999977664

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.57  E-value=2.5e-07  Score=86.94  Aligned_cols=79  Identities=29%  Similarity=0.349  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---HhhcC-Cce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~~-~~y  176 (337)
                      .+..+||++|||+|+.+.++++..+..+|++||+|+.+++.|++++...     .++++++.+|..+.   +.... .+|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-----g~~v~~v~~d~~~l~~~l~~~g~~~~   99 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREADFLLKTLGIEKV   99 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHhcCCCCC
Confidence            4567999999999999999999865679999999999999999987643     16899999998764   33222 579


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |.|++|+.
T Consensus       100 D~Vl~D~g  107 (301)
T 1m6y_A          100 DGILMDLG  107 (301)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEcCc
Confidence            99999985

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.57  E-value=2.2e-07  Score=85.93  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=72.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+. +||+||||+|.++..+++..  .+|++||+|+.+++.+++.+.       +.+++++.+|+.++--.....+|.|+
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~~~~~~~iv  115 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEEVPQGSLLV  115 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGGSCTTEEEE
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhhccCccEEE
Confidence            344 99999999999999999873  689999999999999998764       25899999999876322223689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+++...        .+.-+++. +....-+.+++++|.
T Consensus       116 ~NlPy~i--------ss~il~~l-l~~~~~~~~~lm~Qk  145 (271)
T 3fut_A          116 ANLPYHI--------ATPLVTRL-LKTGRFARLVFLVQK  145 (271)
T ss_dssp             EEECSSC--------CHHHHHHH-HHHCCEEEEEEEEEH
T ss_pred             ecCcccc--------cHHHHHHH-hcCCCCCEEEEEeee
Confidence            9986322        23333443 433222467777773

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.56  E-value=5.9e-08  Score=87.64  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCC-cee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKE-SYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~-~yD  177 (337)
                      +.+++||+||||+|.++..++++ +..+|++||+++.+++.|++..         +++......-..++.  .... .||
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d  105 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD---------ERVVVMEQFNFRNAVLADFEQGRPS  105 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC---------TTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC---------ccccccccceEEEeCHhHcCcCCCC
Confidence            45679999999999999999987 4569999999999999987742         343332221122222  1122 378


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+..|..-.       .+  ..+++. +++.|+|||.+++-
T Consensus       106 ~~~~D~v~~-------~l--~~~l~~-i~rvLkpgG~lv~~  136 (232)
T 3opn_A          106 FTSIDVSFI-------SL--DLILPP-LYEILEKNGEVAAL  136 (232)
T ss_dssp             EEEECCSSS-------CG--GGTHHH-HHHHSCTTCEEEEE
T ss_pred             EEEEEEEhh-------hH--HHHHHH-HHHhccCCCEEEEE
Confidence            777776421       11  457777 79999999988774

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.55  E-value=8.6e-08  Score=92.02  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|..+..+++..+..+++++|+ +.+++.|+++          ++++++.+|..+.   .+. ||+|+
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~v~  272 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS---VPQ-GDAMI  272 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC---CCC-EEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC---CCC-CCEEE
Confidence            4568999999999999999999877778999999 9999877642          5799999998652   233 99999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  ......+++. +++.|+|||.+++.
T Consensus       273 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          273 LKAVCHN--WS--DEKCIEFLSN-CHKALSPNGKVIIV  305 (372)
T ss_dssp             EESSGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Eeccccc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            8754211  01  0112378898 89999999988765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.53  E-value=1.3e-07  Score=90.08  Aligned_cols=98  Identities=19%  Similarity=0.126  Sum_probs=74.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.+.+||+||||+|..+..+++..+..+++++|+ +.+++.|+++          ++++++.+|..+.   .+ .||+|+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~p-~~D~v~  251 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTS---IP-NADAVL  251 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTC---CC-CCSEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCC---CC-CccEEE
Confidence            4568999999999999999998877779999999 9999887652          4599999998652   22 399999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCC---CceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p---~Gvlv~~  218 (337)
                      +...-..  -+  ..-...+++. +++.|+|   ||.+++.
T Consensus       252 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          252 LKYILHN--WT--DKDCLRILKK-CKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHHSGGGCCCEEEEE
T ss_pred             eehhhcc--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEE
Confidence            8754211  01  0112378898 7999999   9987765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.53  E-value=7.6e-08  Score=88.39  Aligned_cols=80  Identities=13%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECCh-------HHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE-------EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-  173 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~-------~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-  173 (337)
                      ...+||++|||+|..+..+++.  ..+|++||+++       ..++.|+++...+..   ..|++++.+|+.+++.... 
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~---~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT---AARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH---HTTEEEEESCHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC---ccCeEEEECCHHHHHHhhhc
Confidence            4579999999999999999986  36899999999       899999887654321   2479999999999876433 


Q ss_pred             --CceeEEEEeCCCC
Q 019699          174 --ESYDVIIGDLADP  186 (337)
Q Consensus       174 --~~yDvIi~D~~dp  186 (337)
                        ++||+|++|+..+
T Consensus       158 ~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHCCCSEEEECCCC-
T ss_pred             cCCCccEEEECCCCC
Confidence              6899999998644

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.52  E-value=1.2e-07  Score=92.64  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi  180 (337)
                      ...+||++|||+|..+..+++.  ..+|++||+|+.+++.|++++......+  .+++++.+|+.+++... .++||+|+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECcHHHhhhhccCCCceEEE
Confidence            3689999999999999988875  3699999999999999999986531111  57999999999987642 35799999


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      +|++
T Consensus       169 lDPP  172 (410)
T 3ll7_A          169 VDPA  172 (410)
T ss_dssp             ECCE
T ss_pred             ECCC
Confidence            9997

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.52  E-value=2.4e-07  Score=86.07  Aligned_cols=77  Identities=18%  Similarity=0.361  Sum_probs=62.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++..  .+|++||+|+.+++.+++.+....   ..++++++.+|+.++   ....||+|+
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~---~~~~fD~vv   98 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   98 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceecc---cchhhcEEE
Confidence            456799999999999999999873  589999999999999999875321   125899999998764   124799999


Q ss_pred             EeCCC
Q 019699          181 GDLAD  185 (337)
Q Consensus       181 ~D~~d  185 (337)
                      ++++.
T Consensus        99 ~nlpy  103 (285)
T 1zq9_A           99 ANLPY  103 (285)
T ss_dssp             EECCG
T ss_pred             EecCc
Confidence            98753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.51  E-value=2.1e-07  Score=87.22  Aligned_cols=75  Identities=17%  Similarity=0.341  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..+++.  ..+|++||+|+.+++.+++.+..      .++++++.+|+.++-- ....||+|+
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~~-~~~~fD~Iv  119 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVDL-NKLDFNKVV  119 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSCG-GGSCCSEEE
T ss_pred             CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCCc-ccCCccEEE
Confidence            45679999999999999999987  47999999999999999998762      3689999999976421 124699999


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      .+++
T Consensus       120 ~NlP  123 (295)
T 3gru_A          120 ANLP  123 (295)
T ss_dssp             EECC
T ss_pred             EeCc
Confidence            8875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.50  E-value=2.6e-07  Score=84.75  Aligned_cols=100  Identities=18%  Similarity=0.318  Sum_probs=72.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hhhc--CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~--~~~yD  177 (337)
                      .+..+||+||||+|.++..+++..  .+|++||+|+.+++.+++.+..      .++++++.+|+.++ +.+.  .+.||
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~   99 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVKTDKPLR   99 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhccCCCeE
Confidence            456799999999999999999863  7999999999999999998753      36899999999876 3332  35688


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccc-cCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~-L~p~Gvlv~~  218 (337)
                       |+.+++.        ...+.-.++. +... .-...++++|
T Consensus       100 -vv~NlPY--------~is~~il~~l-l~~~~~~~~~~lm~Q  131 (255)
T 3tqs_A          100 -VVGNLPY--------NISTPLLFHL-FSQIHCIEDMHFMLQ  131 (255)
T ss_dssp             -EEEECCH--------HHHHHHHHHH-HHTGGGEEEEEEEEE
T ss_pred             -EEecCCc--------ccCHHHHHHH-HhCCCChheEEEEEe
Confidence             7778642        2223333443 3322 2245677777

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.50  E-value=1.3e-07  Score=90.95  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||||+|.++..+++..+..+++++|+ |.+++.+++          .++++++.+|..+.+   +.. |+|+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~~---p~~-D~v~  266 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFDGV---PKG-DAIF  266 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTCC---CCC-SEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCCCC---CCC-CEEE
Confidence            3468999999999999999999877889999999 989887653          268999999987522   233 9998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-+.  -+  .-....+++. +++.|+|||.+++.
T Consensus       267 ~~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~  299 (368)
T 3reo_A          267 IKWICHD--WS--DEHCLKLLKN-CYAALPDHGKVIVA  299 (368)
T ss_dssp             EESCGGG--BC--HHHHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             Eechhhc--CC--HHHHHHHHHH-HHHHcCCCCEEEEE
Confidence            8764211  01  0012367888 79999999988764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.47  E-value=5.8e-07  Score=81.52  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..++++.  .+|++||+|+.+++.+++.+..      .++++++.+|+.++--.....| .|+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~~-~vv   99 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFPKNQSY-KIF   99 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCCSSCCC-EEE
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCcccCCCe-EEE
Confidence            456799999999999999999874  7899999999999999998642      2689999999877522212345 577


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      ++++
T Consensus       100 ~nlP  103 (244)
T 1qam_A          100 GNIP  103 (244)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.47  E-value=3.9e-07  Score=92.62  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=64.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      ..|.||||||||+|.++..+++.  ..+|++||+++..++.|+.+.....    .-++++..+|+.+.... .+++||+|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENP----DFAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTST----TSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcC----CCceEEEECCHHHHhhhccCCCccEE
Confidence            57789999999999999999986  3689999999999999999875431    23689999999988765 35789999


Q ss_pred             EEeC
Q 019699          180 IGDL  183 (337)
Q Consensus       180 i~D~  183 (337)
                      ++--
T Consensus       139 ~~~e  142 (569)
T 4azs_A          139 IGLS  142 (569)
T ss_dssp             EEES
T ss_pred             EECc
Confidence            9764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.47  E-value=2.3e-07  Score=81.39  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+.     .+++++|+++.                   +++++.+|+.+ +....++||+|+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~v~  120 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQ-VPLEDESVDVAV  120 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTS-CSCCTTCEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEecccc-CCCCCCCEeEEE
Confidence            456899999999999988762     57999999987                   34566777655 222346899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCce
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTW  259 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~  259 (337)
                      +...-..       -....+++. +.+.|+|||.+++...... ...   ...+.+.+++. |..+..     ...++.+
T Consensus       121 ~~~~l~~-------~~~~~~l~~-~~~~L~~gG~l~i~~~~~~-~~~---~~~~~~~l~~~Gf~~~~~-----~~~~~~~  183 (215)
T 2zfu_A          121 FCLSLMG-------TNIRDFLEE-ANRVLKPGGLLKVAEVSSR-FED---VRTFLRAVTKLGFKIVSK-----DLTNSHF  183 (215)
T ss_dssp             EESCCCS-------SCHHHHHHH-HHHHEEEEEEEEEEECGGG-CSC---HHHHHHHHHHTTEEEEEE-----ECCSTTC
T ss_pred             Eehhccc-------cCHHHHHHH-HHHhCCCCeEEEEEEcCCC-CCC---HHHHHHHHHHCCCEEEEE-----ecCCCeE
Confidence            8754321       123578888 7999999999887532110 122   23444555554 554331     1123446


Q ss_pred             EEEEEecCC
Q 019699          260 GWIMASDSP  268 (337)
Q Consensus       260 ~~~~as~~p  268 (337)
                      .++++.|..
T Consensus       184 ~~~~~~k~~  192 (215)
T 2zfu_A          184 FLFDFQKTG  192 (215)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEecC
Confidence            677777753

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.47  E-value=1.5e-07  Score=86.43  Aligned_cols=82  Identities=17%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--CCCCC---CCeEEEEccHHHHHhhcCCceeE
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSD---PRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~d---~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+|||+|||.|..+.++++..  .+|++||+++.+.+++++.+....  ...++   .|++++.+|+.++++...++||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            799999999999999999873  479999999999888888764221  01111   57999999999999876568999


Q ss_pred             EEEeCCCCC
Q 019699          179 IIGDLADPI  187 (337)
Q Consensus       179 Ii~D~~dp~  187 (337)
                      |++|+..+.
T Consensus       168 V~lDP~y~~  176 (258)
T 2oyr_A          168 VYLDPMFPH  176 (258)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCCCC
Confidence            999987554

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.46  E-value=6e-07  Score=83.18  Aligned_cols=151  Identities=13%  Similarity=0.143  Sum_probs=104.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yDv  178 (337)
                      ++..+|++-.|+|.++.|+++ . ..+++.||+++..++..++++..      +++++++..|+.++++.   .+.+||+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~-~d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~~fdL  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-S-QDRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGL  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-T-TSEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC-C-CCeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence            467899999999999999998 3 48999999999999999998853      47899999999999875   3357999


Q ss_pred             EEEeCCCCCCCCCCcCCchH--HHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc--c
Q 019699          179 IIGDLADPIEGGPCYKLYTK--SFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP--S  254 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~--ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP--~  254 (337)
                      |++|++...     ...+.+  +.+..  ...+.++|+++++.  |  ..+.+....+.+.|++.-..+......+.  +
T Consensus       163 VfiDPPYe~-----k~~~~~vl~~L~~--~~~r~~~Gi~v~WY--P--i~~~~~~~~~~~~l~~~~~~~l~~el~~~~~~  231 (283)
T 2oo3_A          163 IFIDPSYER-----KEEYKEIPYAIKN--AYSKFSTGLYCVWY--P--VVNKAWTEQFLRKMREISSKSVRIELHLNPLI  231 (283)
T ss_dssp             EEECCCCCS-----TTHHHHHHHHHHH--HHHHCTTSEEEEEE--E--ESSHHHHHHHHHHHHHHCSSEEEEEEECCCSS
T ss_pred             EEECCCCCC-----CcHHHHHHHHHHH--hCccCCCeEEEEEE--e--ccchHHHHHHHHHHHhcCCCeEEEEEEecCCC
Confidence            999986431     112221  22222  24688999999985  2  45666777888888755333322222221  1


Q ss_pred             cCCceE-EEEEecCCCCC
Q 019699          255 FADTWG-WIMASDSPFTL  271 (337)
Q Consensus       255 ~~~~~~-~~~as~~p~~~  271 (337)
                      -.++.+ =++.-+.|..+
T Consensus       232 ~~gm~gsGm~viNpP~~l  249 (283)
T 2oo3_A          232 NEGMTGCGLWIINPPYTF  249 (283)
T ss_dssp             CCSCCEEEEEEESCCTTH
T ss_pred             CCCcCceeEEEECCchhH
Confidence            133333 25566767654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.46  E-value=1.9e-07  Score=89.68  Aligned_cols=98  Identities=21%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||||+|..+..+++..+..+++++|+ |.+++.|++          .+|++++.+|..+-   .+.. |+|+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~p~~-D~v~  264 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFKE---VPSG-DTIL  264 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTC---CCCC-SEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCCC---CCCC-CEEE
Confidence            4568999999999999999999877889999999 988887653          26899999998752   2233 9999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-+.  -+..  ....++++ +++.|+|||.+++.
T Consensus       265 ~~~vlh~--~~d~--~~~~~L~~-~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          265 MKWILHD--WSDQ--HCATLLKN-CYDALPAHGKVVLV  297 (364)
T ss_dssp             EESCGGG--SCHH--HHHHHHHH-HHHHSCTTCEEEEE
T ss_pred             ehHHhcc--CCHH--HHHHHHHH-HHHHcCCCCEEEEE
Confidence            8754211  0100  12467888 79999999988765

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.45  E-value=1.4e-07  Score=86.60  Aligned_cols=101  Identities=25%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.|.+|||||||.|-++..+....+..+++++|||+.+++++++++..+     ..+.++.+.|...  ...+.+||+|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~-----g~~~~~~v~D~~~--~~p~~~~DvaL  203 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL-----NVPHRTNVADLLE--DRLDEPADVTL  203 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-----TCCEEEEECCTTT--SCCCSCCSEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeeecc--cCCCCCcchHH
Confidence            6689999999999999988888778899999999999999999998764     3568888888532  22458899999


Q ss_pred             EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +...-|.       |-.   ..-|+  +.+.|+++|+++-
T Consensus       204 ~lkti~~-------Le~q~kg~g~~--ll~aL~~~~vvVS  234 (281)
T 3lcv_B          204 LLKTLPC-------LETQQRGSGWE--VIDIVNSPNIVVT  234 (281)
T ss_dssp             ETTCHHH-------HHHHSTTHHHH--HHHHSSCSEEEEE
T ss_pred             HHHHHHH-------hhhhhhHHHHH--HHHHhCCCCEEEe
Confidence            8765221       111   12333  4578999999874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.43  E-value=1.1e-06  Score=85.42  Aligned_cols=111  Identities=11%  Similarity=0.040  Sum_probs=77.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC--------------------------------------cEEEEEECChHHHHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV--------------------------------------EKVVMCDIDEEVVEFC  142 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~--------------------------------------~~v~~VEid~~vi~~a  142 (337)
                      .....|||.+||+|+++.+++.....                                      .+|+++|+|+.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            45678999999999999888764211                                      4699999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCC--CceEEEeC
Q 019699          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (337)
Q Consensus       143 ~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p--~Gvlv~~~  219 (337)
                      +++.....   -+.+++++.+|+.++..  ..+||+|++|++....-+  ..---.++|+. +.+.|++  ||.+.+-+
T Consensus       280 r~Na~~~g---l~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~--~~~~l~~ly~~-lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          280 KQNAVEAG---LGDLITFRQLQVADFQT--EDEYGVVVANPPYGERLE--DEEAVRQLYRE-MGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHTT---CTTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHH--HHHHHHHHHHH-HHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHcC---CCCceEEEECChHhCCC--CCCCCEEEECCCCccccC--CchhHHHHHHH-HHHHHhcCCCCEEEEEE
Confidence            99986542   13479999999987643  358999999987432100  00011346665 4555554  77665543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.43  E-value=5.7e-07  Score=87.20  Aligned_cols=111  Identities=12%  Similarity=-0.022  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC--------------------------------------cEEEEEECChHHHHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV--------------------------------------EKVVMCDIDEEVVEFC  142 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~--------------------------------------~~v~~VEid~~vi~~a  142 (337)
                      .....+||.+||+|+++.+++.....                                      .+|+++|+|+.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            45578999999999999988864211                                      4699999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCC--CceEEEeC
Q 019699          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (337)
Q Consensus       143 ~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p--~Gvlv~~~  219 (337)
                      +++.....  + +.+++++.+|+.++..  ..+||+|++|++-...-+  ..--..++|+. +.+.|++  ||.+.+-+
T Consensus       273 r~Na~~~g--l-~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~--~~~~l~~ly~~-lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          273 RKNAREVG--L-EDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLL--DDKAVDILYNE-MGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHTT--C-TTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTS--CHHHHHHHHHH-HHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHcC--C-CCceEEEECChHHCCc--cCCcCEEEECCchhhccC--CHHHHHHHHHH-HHHHHhhCCCcEEEEEE
Confidence            99986542  1 3479999999987643  358999999997543211  11112456665 5555554  77665543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.42  E-value=1.5e-06  Score=79.30  Aligned_cols=100  Identities=27%  Similarity=0.400  Sum_probs=71.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~~~yDvI  179 (337)
                      .+..+||+||||+|.++.++++. +..+|++||+|+.+++.+++. .       .++++++.+|+.++ +.+....| .|
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~~~~~~~~~~-~v   99 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKFPFCSLGKEL-KV   99 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTCCGGGSCSSE-EE
T ss_pred             CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhCChhHccCCc-EE
Confidence            45679999999999999999987 357999999999999999876 2       36899999999775 22222234 78


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~  219 (337)
                      +.+++.        ...+.-+++. +.. ..-+.+++++|.
T Consensus       100 v~NlPy--------~i~~~il~~l-l~~~~~~~~~~~m~Qk  131 (249)
T 3ftd_A          100 VGNLPY--------NVASLIIENT-VYNKDCVPLAVFMVQK  131 (249)
T ss_dssp             EEECCT--------TTHHHHHHHH-HHTGGGCSEEEEEEEH
T ss_pred             EEECch--------hccHHHHHHH-HhcCCCCceEEEEEeH
Confidence            888753        2223334443 432 234567777774

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.41  E-value=2.5e-07  Score=91.19  Aligned_cols=112  Identities=14%  Similarity=0.056  Sum_probs=79.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-------------CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-------------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-------------~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      ...+||+.|||+|+++..+.++.             ...+++++|+|+.++++|+.++..+.  ..+.+.+++.+|....
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g--~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG--IGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT--CCSSCCSEEECCTTTS
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC--CCcCCCCEeeCCCCCC
Confidence            34699999999999998887652             23579999999999999999876542  2222678999997654


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcC-----------CchHHHHHHHhccccCCCceEEEe
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYK-----------LYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~-----------L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .  ...+||+|+++++-.........           -....|++. +.+.|+|||.+++-
T Consensus       249 ~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~gG~~a~V  306 (445)
T 2okc_A          249 E--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVV  306 (445)
T ss_dssp             C--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             c--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHH-HHHHhccCCEEEEE
Confidence            2  23489999999873211010000           012478998 78999999987654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.40  E-value=5.2e-07  Score=83.57  Aligned_cols=112  Identities=16%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             CCCeEEEEecchhH----HHHHHHhcCC----CcEEEEEECChHHHHHHHhhhh-hcc----------------CCCCC-
Q 019699          102 NPKTIFIMGGGEGS----TAREILRHKT----VEKVVMCDIDEEVVEFCKSYLV-VNK----------------EAFSD-  155 (337)
Q Consensus       102 ~p~~VLiIG~G~G~----~~~~ll~~~~----~~~v~~VEid~~vi~~a~~~f~-~~~----------------~~~~d-  155 (337)
                      .+.+||++|||+|.    ++..++++.+    ..+|+++|||+++++.|++..- ...                ....+ 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    5555555422    2589999999999999998531 000                00001 


Q ss_pred             ---------CCeEEEEccHHHH-HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          156 ---------PRLELVINDARAE-LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       156 ---------~rv~v~~~D~~~~-l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                               .++++...|..+. + ...++||+|++-..-..- .+   -.....++. +.+.|+|||.+++-.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~-~~~~~fDlI~crnvliyf-~~---~~~~~vl~~-~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQY-NVPGPFDAIFCRNVMIYF-DK---TTQEDILRR-FVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC-CCCCCEEEEEECSSGGGS-CH---HHHHHHHHH-HGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCC-CcCCCeeEEEECCchHhC-CH---HHHHHHHHH-HHHHhCCCcEEEEEe
Confidence                     3789999997651 1 113689999994210000 00   012467887 799999999998854

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.38  E-value=3.1e-07  Score=89.09  Aligned_cols=111  Identities=16%  Similarity=0.115  Sum_probs=77.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC--------------------------------------CcEEEEEECChHHHHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC  142 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~--------------------------------------~~~v~~VEid~~vi~~a  142 (337)
                      ....+|||.|||+|+++.+++....                                      ..+|+++|+|+.+++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            3457899999999999999876521                                      14799999999999999


Q ss_pred             HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCC--CceEEEeC
Q 019699          143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA  219 (337)
Q Consensus       143 ~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p--~Gvlv~~~  219 (337)
                      +++...+.   -+.++++..+|+.++..  +.+||+|++|++....-+  ..-.-.++|+. +.+.|++  ||.+.+-+
T Consensus       274 r~Na~~~g---l~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~--~~~~l~~ly~~-lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          274 RENAEIAG---VDEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLE--DKDSVKQLYKE-LGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHT---CGGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHH--HHHHHHHHHHH-HHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHcC---CCCceEEEECChhhcCc--CCCCcEEEECCCCcCccC--CHHHHHHHHHH-HHHHHhhCCCCEEEEEE
Confidence            99986542   12479999999987643  368999999987432100  00011346665 5555655  66555443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.34  E-value=4.1e-07  Score=85.12  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=58.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++.+||+||||+|.++..+++.  ..+|++||+|+.+++.+++.+....    .++++++.+|+.++-   ..+||+|+
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~~---~~~~D~Vv  111 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKTV---FPKFDVCT  111 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSSC---CCCCSEEE
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhCC---cccCCEEE
Confidence            45679999999999999999886  4689999999999999999875321    268999999986642   25799999


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      +|++
T Consensus       112 ~n~p  115 (299)
T 2h1r_A          112 ANIP  115 (299)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            9975

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.34  E-value=7.2e-07  Score=81.06  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +.|.+|||||||.|-++..+.   +..+++++|||+.+++.+++++...     .+++++.+.|...-  ..+.+||+|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~--~~~~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCA--PPAEAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTS--CCCCBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccC--CCCCCcchHH
Confidence            678999999999999998776   5789999999999999999997654     47789999996532  2357899998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +...-|.-    .+.-...-++  +-+.|+++|+++.
T Consensus       174 llk~lh~L----E~q~~~~~~~--ll~aL~~~~vvVs  204 (253)
T 3frh_A          174 IFKLLPLL----EREQAGSAMA--LLQSLNTPRMAVS  204 (253)
T ss_dssp             EESCHHHH----HHHSTTHHHH--HHHHCBCSEEEEE
T ss_pred             HHHHHHHh----hhhchhhHHH--HHHHhcCCCEEEE
Confidence            87542210    0001112333  3458999998874

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.32  E-value=4.3e-07  Score=86.58  Aligned_cols=97  Identities=18%  Similarity=0.130  Sum_probs=73.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ...+||+||||+|..+..++++.+..+++++|+ +.+++.+++          .++++++.+|..+   ..+ .||+|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~-~~D~v~~  257 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----------NENLNFVGGDMFK---SIP-SADAVLL  257 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----------CSSEEEEECCTTT---CCC-CCSEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----------CCCcEEEeCccCC---CCC-CceEEEE
Confidence            568999999999999999999877779999999 888876654          1469999999865   222 5999998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCC---CceEEEe
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQ  218 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p---~Gvlv~~  218 (337)
                      ...-..  -+  .-....+++. +++.|+|   ||.+++.
T Consensus       258 ~~vlh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          258 KWVLHD--WN--DEQSLKILKN-SKEAISHKGKDGKVIII  292 (358)
T ss_dssp             ESCGGG--SC--HHHHHHHHHH-HHHHTGGGGGGCEEEEE
T ss_pred             cccccC--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEE
Confidence            764221  01  1112378898 7999999   9977764

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.31  E-value=1.5e-06  Score=80.79  Aligned_cols=109  Identities=12%  Similarity=0.033  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-----CCcEEEEEECChH--------------------------HHHHHHhhhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEE--------------------------VVEFCKSYLVV  148 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-----~~~~v~~VEid~~--------------------------vi~~a~~~f~~  148 (337)
                      ...|++||++|...|.++..+++..     +..+|+++|..+.                          .++.++++|..
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            3568999999999999887665421     3578999996421                          36678888864


Q ss_pred             ccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          149 NKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       149 ~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..  +.+++++++.||+.+.|.+. .++||+|++|+..        .-.+.++|+. +..+|+|||++++.-
T Consensus       184 ~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--------y~~~~~~Le~-~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          184 YD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--------YESTWDTLTN-LYPKVSVGGYVIVDD  244 (282)
T ss_dssp             TT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred             cC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--------cccHHHHHHH-HHhhcCCCEEEEEcC
Confidence            32  33579999999999998775 3789999999731        1125688898 799999999999853

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.31  E-value=1.4e-06  Score=88.15  Aligned_cols=138  Identities=12%  Similarity=0.031  Sum_probs=87.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC---------------CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~---------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~  165 (337)
                      +.+.+||+.+||+|+++..++++..               ..++.++|+|+.++++|+.++..+.  . +.++.++.+|.
T Consensus       243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i-~~~i~i~~gDt  319 (544)
T 3khk_A          243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG--I-DFNFGKKNADS  319 (544)
T ss_dssp             CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT--C-CCBCCSSSCCT
T ss_pred             cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC--C-Ccccceeccch
Confidence            4556999999999999887754311               3589999999999999999876543  1 23355578886


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCC---C--------------------CCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          166 RAELESRKESYDVIIGDLADPIE---G--------------------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~---~--------------------~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      ...-.....+||+|++++|-...   .                    .|...-....|++. +.+.|+|||.+++-... 
T Consensus       320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~aiVlP~-  397 (544)
T 3khk_A          320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH-MLYHLAPTGSMALLLAN-  397 (544)
T ss_dssp             TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH-HHHTEEEEEEEEEEEET-
T ss_pred             hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH-HHHHhccCceEEEEecc-
Confidence            54322224689999999974321   0                    01111112368998 78999999987654311 


Q ss_pred             CcCCCh-hHHHHHHHHHhhhcC
Q 019699          223 GIFSHT-EVFSCIYNTLRQVFK  243 (337)
Q Consensus       223 ~~~~~~-~~~~~i~~~l~~vF~  243 (337)
                      +.+... .....+.+.|.+-+.
T Consensus       398 g~L~~~~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          398 GSMSSNTNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             HHHHCCGGGHHHHHHHHHHTTC
T ss_pred             hhhhcCcchHHHHHHHHHhCCc
Confidence            111122 234556666655544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.30  E-value=6.1e-06  Score=83.43  Aligned_cols=138  Identities=11%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~y  176 (337)
                      ...+||+.+||+|+++..++++   ....++.++|+|+..+++|+.++..+.  ...++++++.+|....  -.....+|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~~~~~~I~~gDtL~~d~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG--VPIENQFLHNADTLDEDWPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC--CCcCccceEecceecccccccccccc
Confidence            4569999999999998888776   235789999999999999999876542  2225789999997643  11234789


Q ss_pred             eEEEEeCCCCCCCCC-----------------CcCCchHHHHHHHhccccC-CCceEEEeCCCCCcCCChhHHHHHHHHH
Q 019699          177 DVIIGDLADPIEGGP-----------------CYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTL  238 (337)
Q Consensus       177 DvIi~D~~dp~~~~p-----------------~~~L~t~ef~~~~~~~~L~-p~Gvlv~~~~~p~~~~~~~~~~~i~~~l  238 (337)
                      |+|+.++|-......                 +..-....|++. +.+.|+ +||.+++-... +.+........+.+.|
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~-~l~~Lk~~gGr~a~VlP~-g~Lf~~~~~~~iRk~L  376 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLH-GYYHLKQDNGVMAIVLPH-GVLFRGNAEGTIRKAL  376 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHH-HHHTBCTTTCEEEEEEET-HHHHCCTHHHHHHHHH
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHH-HHHHhCCCceeEEEEecc-hHhhCCchhHHHHHHH
Confidence            999999973211000                 000112358898 789999 99987654311 1111222334555665


Q ss_pred             hhhcC
Q 019699          239 RQVFK  243 (337)
Q Consensus       239 ~~vF~  243 (337)
                      -+-+.
T Consensus       377 le~~~  381 (542)
T 3lkd_A          377 LEEGA  381 (542)
T ss_dssp             HHTTC
T ss_pred             HhCCc
Confidence            55443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.29  E-value=8.7e-06  Score=78.16  Aligned_cols=121  Identities=13%  Similarity=0.112  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--CCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+..+|||+++|.|+=+..++.......|+++|+++.=++..++.+....  ......++++...|++.+-....++||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            344579999999999988888876655689999999998888888765321  111235799999999988766678999


Q ss_pred             EEEEeCC-CCC-----CCCCCc-C-----------CchHHHHHHHhccccCCCceEEEeCCC
Q 019699          178 VIIGDLA-DPI-----EGGPCY-K-----------LYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       178 vIi~D~~-dp~-----~~~p~~-~-----------L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      .|++|++ +..     ...|.. .           -...+.++. +.+.|+|||++|--+.+
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lkpGG~LVYsTCS  286 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-GLLATKPGGHVVYSTCS  286 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHH-HHHTEEEEEEEEEEESC
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCC
Confidence            9999997 220     001110 0           112456676 67889999998866544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.18  E-value=7.6e-06  Score=85.52  Aligned_cols=141  Identities=11%  Similarity=0.042  Sum_probs=87.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCC---CcEEEEEECChHHHHHH--HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFC--KSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~---~~~v~~VEid~~vi~~a--~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      ...+||+.|||+|+++.+++++.+   ..++.++|||+..+++|  +..+..+......+...+..+|....-.....+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            467999999999999999887643   35799999999999999  5544321100112234666677654211234689


Q ss_pred             eEEEEeCCCCC-CCCCC-----------------cC-----CchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHH
Q 019699          177 DVIIGDLADPI-EGGPC-----------------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVF  231 (337)
Q Consensus       177 DvIi~D~~dp~-~~~p~-----------------~~-----L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~  231 (337)
                      |+||+++|-.. ...+.                 ..     -....|++. +.+.|++||.+++-....  +.  .....
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~-Al~lLKpGGrLAfIlP~s--~Lf~sg~~~  477 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLEL-VTELVQDGTVISAIMPKQ--YLTAQGNES  477 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHH-HHHHSCTTCEEEEEEETH--HHHCCSHHH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHH-HHHhcCCCcEEEEEEChH--HhccCChHH
Confidence            99999997421 00000                 00     012357887 788999999887654211  22  22334


Q ss_pred             HHHHHHHhhhcCce
Q 019699          232 SCIYNTLRQVFKYV  245 (337)
Q Consensus       232 ~~i~~~l~~vF~~v  245 (337)
                      +.+.+.|.+-+...
T Consensus       478 kkLRk~LLe~~~I~  491 (878)
T 3s1s_A          478 KAFREFLVGNFGLE  491 (878)
T ss_dssp             HHHHHHHTTTTCEE
T ss_pred             HHHHHHHHhCCCeE
Confidence            55666666555433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.16  E-value=2.6e-06  Score=86.09  Aligned_cols=114  Identities=8%  Similarity=0.003  Sum_probs=79.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC---C---------------CcEEEEEECChHHHHHHHhhhhhccCCCCC---CCeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK---T---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSD---PRLEL  160 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~---~---------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d---~rv~v  160 (337)
                      ...+||+.+||+|+++..+.++.   .               ..++.++|+|+.++++|+..+..+.  ..+   .+.++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g--i~~~~~~~~~I  246 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD--IEGNLDHGGAI  246 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT--CCCBGGGTBSE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC--CCccccccCCe
Confidence            45699999999999987777541   0               1379999999999999999876542  111   23789


Q ss_pred             EEccHHHHHhhcCCceeEEEEeCCCCCCCCC--------CcCCchHHHHHHHhccccCCCceEEEe
Q 019699          161 VINDARAELESRKESYDVIIGDLADPIEGGP--------CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       161 ~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p--------~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +.+|....-.....+||+|+.++|-......        +..-....|++. +.+.|+|||.+++-
T Consensus       247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~a~V  311 (541)
T 2ar0_A          247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVV  311 (541)
T ss_dssp             EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH-HHHHhCCCCEEEEE
Confidence            9999876533334689999999973221000        001112368888 78999999987654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.13  E-value=2e-06  Score=73.14  Aligned_cols=89  Identities=11%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD  177 (337)
                      .....+||+||+|.                +.+|+++.+++.|++.+.        .+++++.+|+.+.-..  ..++||
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc--------cCcEEEEechhcCccccCCCCCEe
Confidence            35678999999985                139999999999998753        2489999998765321  357899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++...-..  .+ ..  ...+++. ++++|+|||.+++.
T Consensus        66 ~V~~~~~l~~--~~-~~--~~~~l~~-~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           66 IILSGLVPGS--TT-LH--SAEILAE-IARILRPGGCLFLK  100 (176)
T ss_dssp             EEEECCSTTC--CC-CC--CHHHHHH-HHHHEEEEEEEEEE
T ss_pred             EEEECChhhh--cc-cC--HHHHHHH-HHHHCCCCEEEEEE
Confidence            9998554222  10 11  2678998 89999999999885

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.12  E-value=2.9e-06  Score=77.52  Aligned_cols=76  Identities=12%  Similarity=0.239  Sum_probs=56.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hhhc---CCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR---KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~---~~~y  176 (337)
                      ....+||+||||+|.++. +.+ ....+|++||+|+.+++.+++.+..      .++++++.+|+.++ +.+.   .+..
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~   91 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMGQP   91 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCHHHhhcccCCc
Confidence            455789999999999999 643 3222399999999999999987643      25899999999774 2211   1245


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |+|+.+++
T Consensus        92 ~~vvsNlP   99 (252)
T 1qyr_A           92 LRVFGNLP   99 (252)
T ss_dssp             EEEEEECC
T ss_pred             eEEEECCC
Confidence            78898875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.12  E-value=4.5e-06  Score=77.45  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCC--cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcCC---
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKE---  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~~---  174 (337)
                      .+..+||+||||+|.++..++++...  .+|++||+|+.+++.+++.+        .++++++.+|+.++ +.+...   
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~  112 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--------GELLELHAGDALTFDFGSIARPGD  112 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--------GGGEEEEESCGGGCCGGGGSCSSS
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--------CCCcEEEECChhcCChhHhccccc
Confidence            45679999999999999999986421  33999999999999999873        25799999999875 222111   


Q ss_pred             -ceeEEEEeCC
Q 019699          175 -SYDVIIGDLA  184 (337)
Q Consensus       175 -~yDvIi~D~~  184 (337)
                       ..+.|+.+++
T Consensus       113 ~~~~~vv~NlP  123 (279)
T 3uzu_A          113 EPSLRIIGNLP  123 (279)
T ss_dssp             SCCEEEEEECC
T ss_pred             CCceEEEEccC
Confidence             3457888874

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.11  E-value=1e-05  Score=83.34  Aligned_cols=123  Identities=23%  Similarity=0.361  Sum_probs=80.6

Q ss_pred             hHHHHHHhHH-HhcC--CCCCeEEEEecchhHHHHHHHhc----C---------CCcEEEEEECChHHHHHHHhhhhhcc
Q 019699           87 IYHESLVHPA-LLHH--PNPKTIFIMGGGEGSTAREILRH----K---------TVEKVVMCDIDEEVVEFCKSYLVVNK  150 (337)
Q Consensus        87 ~Y~e~l~~~~-l~~~--~~p~~VLiIG~G~G~~~~~ll~~----~---------~~~~v~~VEid~~vi~~a~~~f~~~~  150 (337)
                      .|.+++...- -...  ...+-||+||+|+|.+...+++.    .         ...+|.+||.++..+...+.... + 
T Consensus       391 ~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-N-  468 (745)
T 3ua3_A          391 VYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-R-  468 (745)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-H-
T ss_pred             HHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-c-
Confidence            4667765431 1111  12457999999999996433221    1         13489999999977655554332 2 


Q ss_pred             CCCCCCCeEEEEccHHHHHh----hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          151 EAFSDPRLELVINDARAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       151 ~~~~d~rv~v~~~D~~~~l~----~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       .+ +.+++++.+|.+++--    ...++.|+||+..-...  +. ..| ..|.+.. +.+.|+|||+++-+
T Consensus       469 -g~-~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsf--l~-nEL-~pe~Ld~-v~r~Lkp~Gi~iP~  533 (745)
T 3ua3_A          469 -TW-KRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSF--GD-NEL-SPECLDG-VTGFLKPTTISIPQ  533 (745)
T ss_dssp             -TT-TTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTT--BG-GGS-HHHHHHT-TGGGSCTTCEEESC
T ss_pred             -CC-CCeEEEEeCchhhcccccccCCCCcccEEEEeccccc--cc-hhc-cHHHHHH-HHHhCCCCcEEECC
Confidence             23 4689999999998843    12588999999986322  11 233 3578887 78999999998643

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.09  E-value=3.9e-06  Score=86.06  Aligned_cols=104  Identities=15%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             CCeEEEEecchhHHHHHHHh---cC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          103 PKTIFIMGGGEGSTAREILR---HK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~---~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+.||+||+|.|-+....++   .. ...+|.+||-+| +...|++....+  .+ +.+++++.+|.+++  +.+++.|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N--~~-~dkVtVI~gd~eev--~LPEKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE--EW-GSQVTVVSSDMREW--VAPEKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH--TT-GGGEEEEESCTTTC--CCSSCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc--cC-CCeEEEEeCcceec--cCCcccCE
Confidence            35799999999988444433   22 122789999998 455666655433  23 46899999998876  35689999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ||+..-...  +. .++. .+.+.. ..+.|+|||+++-
T Consensus       432 IVSEwMG~f--Ll-~E~m-levL~A-rdr~LKPgGimiP  465 (637)
T 4gqb_A          432 IVSELLGSF--AD-NELS-PECLDG-AQHFLKDDGVSIP  465 (637)
T ss_dssp             EECCCCBTT--BG-GGCH-HHHHHH-HGGGEEEEEEEES
T ss_pred             EEEEcCccc--cc-ccCC-HHHHHH-HHHhcCCCcEEcc
Confidence            999986432  21 2222 255655 6889999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.07  E-value=6.7e-06  Score=85.60  Aligned_cols=112  Identities=7%  Similarity=-0.038  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC------------------------------------------CCcEEEEEECChHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK------------------------------------------TVEKVVMCDIDEEV  138 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~------------------------------------------~~~~v~~VEid~~v  138 (337)
                      .....+||.+||+|+++.+++...                                          +..+|.++|+|+.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            445789999999999998887641                                          12479999999999


Q ss_pred             HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccc---cCCCce
Q 019699          139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR---LNPEGI  214 (337)
Q Consensus       139 i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~---L~p~Gv  214 (337)
                      ++.|+++.....   -+.++++..+|+.++..... ++||+|++|+|-..+-+.  .---.++|+. +.+.   +.|||.
T Consensus       269 v~~A~~N~~~ag---v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~--~~~l~~ly~~-l~~~lk~~~~g~~  342 (703)
T 3v97_A          269 IQRARTNARLAG---IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS--EPALIALHSL-LGRIMKNQFGGWN  342 (703)
T ss_dssp             HHHHHHHHHHTT---CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C--CHHHHHHHHH-HHHHHHHHCTTCE
T ss_pred             HHHHHHHHHHcC---CCCceEEEECChhhCccccccCCCCEEEeCCCccccccc--hhHHHHHHHH-HHHHHHhhCCCCe
Confidence            999999976542   13468999999987532222 389999999975432111  1112345554 4433   457886


Q ss_pred             EEEe
Q 019699          215 FVTQ  218 (337)
Q Consensus       215 lv~~  218 (337)
                      +.+-
T Consensus       343 ~~il  346 (703)
T 3v97_A          343 LSLF  346 (703)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.02  E-value=6.9e-06  Score=75.68  Aligned_cols=150  Identities=12%  Similarity=0.036  Sum_probs=91.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+|||||||.|+++..++++.+..+++++++.-++.     .-+...... +.++..+.+|. +...-.+++||+|+
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-----~~pi~~~~~-g~~ii~~~~~~-dv~~l~~~~~DlVl  145 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-----EKPMNVQSL-GWNIITFKDKT-DIHRLEPVKCDTLL  145 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-----CCCCCCCBT-TGGGEEEECSC-CTTTSCCCCCSEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-----ccccccCcC-CCCeEEEeccc-eehhcCCCCccEEE
Confidence            445689999999999999988876677888888874320     001110001 12334444442 11122357899999


Q ss_pred             EeCCCCCCCCCC--cCCchHHHHHHHhccccCCC-ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc-ccC
Q 019699          181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-SFA  256 (337)
Q Consensus       181 ~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~-Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP-~~~  256 (337)
                      +|....  .+-.  .+.-+...++. +.+.|+|| |.|++..-.|    -.+.+..+++.|+..|..|..+.   | +..
T Consensus       146 sD~apn--sG~~~~D~~rs~~LL~~-a~~~LkpG~G~FV~KVf~p----yg~~~~~l~~~lk~~F~~V~~~K---PaSR~  215 (277)
T 3evf_A          146 CDIGES--SSSSVTEGERTVRVLDT-VEKWLACGVDNFCVKVLAP----YMPDVLEKLELLQRRFGGTVIRN---PLSRN  215 (277)
T ss_dssp             ECCCCC--CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEEECC---TTSCT
T ss_pred             ecCccC--cCchHHHHHHHHHHHHH-HHHHhCCCCCeEEEEecCC----CCccHHHHHHHHHHhcCCEEEEe---CCCCC
Confidence            998632  1221  11112223555 67899999 9999975322    14566788899999999987653   4 222


Q ss_pred             C-ceEEEEEecC
Q 019699          257 D-TWGWIMASDS  267 (337)
Q Consensus       257 ~-~~~~~~as~~  267 (337)
                      . .=.|++|..+
T Consensus       216 ~S~E~Y~V~~~r  227 (277)
T 3evf_A          216 STHEMYYVSGAR  227 (277)
T ss_dssp             TCCCEEEESSCC
T ss_pred             CCCceEEEEecC
Confidence            2 2347777655

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.90  E-value=6.6e-07  Score=80.92  Aligned_cols=75  Identities=19%  Similarity=0.393  Sum_probs=60.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|.++..++++.  .+|++||+|+.+++.|++.+.      ..++++++.+|+.++--...++| .|+
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~------~~~~v~~~~~D~~~~~~~~~~~f-~vv   98 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQDILQFQFPNKQRY-KIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc------cCCceEEEECChhhcCcccCCCc-EEE
Confidence            456799999999999999999874  789999999999999888754      13689999999877531112578 788


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      ++++
T Consensus        99 ~n~P  102 (245)
T 1yub_A           99 GNIP  102 (245)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8876

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.85  E-value=2.8e-05  Score=72.21  Aligned_cols=150  Identities=13%  Similarity=0.033  Sum_probs=90.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+.++|||||++.|+++..+++..++..|+++|+......     .+.....+..+-+.+.  ++.+...-.+.++|+|+
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~-----~P~~~~~~~~~iv~~~--~~~di~~l~~~~~DlVl  152 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE-----KPIHMQTLGWNIVKFK--DKSNVFTMPTEPSDTLL  152 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC-----CCCCCCBTTGGGEEEE--CSCCTTTSCCCCCSEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc-----ccccccccCCceEEee--cCceeeecCCCCcCEEe
Confidence            5678999999999999999998766778999999653210     0100000001112222  11122222357899999


Q ss_pred             EeCCCCCCCCCC--cCCchHHHHHHHhccccCCC-ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc-ccC
Q 019699          181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-SFA  256 (337)
Q Consensus       181 ~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~-Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP-~~~  256 (337)
                      +|.. |. .|..  .+.-+...++. +.+.|+|| |.|++-.-.|    -.+.+..++..|+..|..|..+.   | +..
T Consensus       153 sD~A-Pn-sG~~~~D~~rs~~LL~~-A~~~LkpG~G~FV~KvF~~----yG~~~~~ll~~lk~~F~~V~~~K---PaSR~  222 (300)
T 3eld_A          153 CDIG-ES-SSNPLVERDRTMKVLEN-FERWKHVNTENFCVKVLAP----YHPDVIEKLERLQLRFGGGIVRV---PFSRN  222 (300)
T ss_dssp             ECCC-CC-CSSHHHHHHHHHHHHHH-HHHHCCTTCCEEEEEESST----TSHHHHHHHHHHHHHHCCEEECC---TTSCT
T ss_pred             ecCc-CC-CCCHHHHHHHHHHHHHH-HHHHhcCCCCcEEEEeccc----cCccHHHHHHHHHHhCCcEEEEe---CCCCC
Confidence            9986 32 2321  11222334554 67899999 9999975221    14566788899999999987653   4 222


Q ss_pred             C-ceEEEEEecC
Q 019699          257 D-TWGWIMASDS  267 (337)
Q Consensus       257 ~-~~~~~~as~~  267 (337)
                      . .=.|++|..+
T Consensus       223 ~S~E~Y~V~~~r  234 (300)
T 3eld_A          223 STHEMYYISGAR  234 (300)
T ss_dssp             TCCCEEEESSCC
T ss_pred             CChHHeeeccCC
Confidence            2 2346777654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.83  E-value=2.6e-05  Score=80.46  Aligned_cols=114  Identities=12%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC----------C--CcEEEEEEC---ChHHHHHHHhhhhh------------c-----
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK----------T--VEKVVMCDI---DEEVVEFCKSYLVV------------N-----  149 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~----------~--~~~v~~VEi---d~~vi~~a~~~f~~------------~-----  149 (337)
                      +.-+||++|.|+|......++..          .  ..+++.+|.   +++.+..+-.+++.            +     
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            34689999999998765554421          1  135788999   88888754443221            0     


Q ss_pred             --cCCCCC--CCeEEEEccHHHHHhhc----CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          150 --KEAFSD--PRLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       150 --~~~~~d--~rv~v~~~D~~~~l~~~----~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                        .-.+++  -+++++.+|+++.|.+.    ..+||+|+.|.+.|.. .|  .|++.++|+. +.++++|||.++..+
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NP--DMWTQNLFNA-MARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CG--GGSCHHHHHH-HHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence              001223  35678999999999875    3679999999998753 34  7999999999 899999999998764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.81  E-value=8.4e-05  Score=68.79  Aligned_cols=74  Identities=30%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---HhhcC-Cce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~~-~~y  176 (337)
                      .+...++|.++|.|+-++++++.  ..+|+++|.||.+++.|++ +.       ++|++++.+|..++   ++..+ +++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~-------~~rv~lv~~~f~~l~~~L~~~g~~~v   90 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH-------LPGLTVVQGNFRHLKRHLAALGVERV   90 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC-------CTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc-------cCCEEEEECCcchHHHHHHHcCCCCc
Confidence            44578999999999999999997  4699999999999999998 63       16999999998776   54433 579


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |.|+.|+.
T Consensus        91 DgIL~DLG   98 (285)
T 1wg8_A           91 DGILADLG   98 (285)
T ss_dssp             EEEEEECS
T ss_pred             CEEEeCCc
Confidence            99999985

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.80  E-value=5.3e-06  Score=76.56  Aligned_cols=150  Identities=13%  Similarity=0.038  Sum_probs=91.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+|||||||.|+++..+++..++.+|+++++.......+     .....+ +.++.....+. +...-...++|+|+
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p-----i~~~~~-g~~ii~~~~~~-dv~~l~~~~~DvVL  161 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP-----IMRTTL-GWNLIRFKDKT-DVFNMEVIPGDTLL  161 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC-----CCCCBT-TGGGEEEECSC-CGGGSCCCCCSEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc-----cccccC-CCceEEeeCCc-chhhcCCCCcCEEE
Confidence            345689999999999999988766778899999976421111     100001 12333222221 11122357899999


Q ss_pred             EeCCCCCCCCCC--cCCchHHHHHHHhccccCCC--ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc-cc
Q 019699          181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-SF  255 (337)
Q Consensus       181 ~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~--Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP-~~  255 (337)
                      +|....  .+-.  .+.-+.+.++. +.+.|+||  |.|++-.-.|    -.+.+..+++.|+..|..|..+.   | +.
T Consensus       162 SDmApn--sG~~~~D~~rs~~LL~~-A~~~Lk~g~~G~Fv~KvF~p----yg~~~~~l~~~lk~~F~~V~~~K---PaSR  231 (282)
T 3gcz_A          162 CDIGES--SPSIAVEEQRTLRVLNC-AKQWLQEGNYTEFCIKVLCP----YTPLIMEELSRLQLKHGGGLVRV---PLSR  231 (282)
T ss_dssp             ECCCCC--CSCHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEECC---TTSC
T ss_pred             ecCccC--CCChHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEecC----CCccHHHHHHHHHHhcCCEEEEc---CCCc
Confidence            998732  2321  11222234554 67899999  9999975221    04566788899999999987653   4 22


Q ss_pred             CC-ceEEEEEecC
Q 019699          256 AD-TWGWIMASDS  267 (337)
Q Consensus       256 ~~-~~~~~~as~~  267 (337)
                      .. .=.|++|..+
T Consensus       232 ~~S~E~Y~V~~~r  244 (282)
T 3gcz_A          232 NSTHEMYWVSGTR  244 (282)
T ss_dssp             TTCCCEEEETTCC
T ss_pred             ccCcceeEEEecC
Confidence            22 2347777654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.80  E-value=3.8e-05  Score=79.51  Aligned_cols=114  Identities=16%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC----------C--CcEEEEEEC---ChHHHHHHHhhhhh------------------
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK----------T--VEKVVMCDI---DEEVVEFCKSYLVV------------------  148 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~----------~--~~~v~~VEi---d~~vi~~a~~~f~~------------------  148 (337)
                      ++.+||++|.|+|.....+.+..          .  ..+++.+|.   +.+.+..+-..++.                  
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45799999999998765554421          1  146899999   44444433322221                  


Q ss_pred             -ccCCCCCC--CeEEEEccHHHHHhhc----CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          149 -NKEAFSDP--RLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       149 -~~~~~~d~--rv~v~~~D~~~~l~~~----~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       +.-.+++.  +++++.+|+++.|++.    ..++|+|++|.+.|.. .|  .+++.+||+. +.++++|||.++...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-np--~~w~~~~~~~-l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-NP--DMWNEQLFNA-MARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CC--TTCSHHHHHH-HHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-Ch--hhhhHHHHHH-HHHHhCCCCEEEecc
Confidence             01113344  5678999999999875    4789999999998863 34  7999999998 899999999988764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.64  E-value=0.00079  Score=62.47  Aligned_cols=149  Identities=18%  Similarity=0.266  Sum_probs=86.6

Q ss_pred             hhHHHHHHhHHH--hcCCCCCeEEEEec------chhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCC
Q 019699           86 FIYHESLVHPAL--LHHPNPKTIFIMGG------GEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP  156 (337)
Q Consensus        86 ~~Y~e~l~~~~l--~~~~~p~~VLiIG~------G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~  156 (337)
                      .-|+++.-.+--  +..|...+||++|+      .-|+.. +.+  .+....|+.|||.+-+.               ++
T Consensus        91 ~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~--~p~g~~VVavDL~~~~s---------------da  153 (344)
T 3r24_A           91 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQW--LPTGTLLVDSDLNDFVS---------------DA  153 (344)
T ss_dssp             HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHH--SCTTCEEEEEESSCCBC---------------SS
T ss_pred             HHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHh--CCCCcEEEEeeCccccc---------------CC
Confidence            357765543311  23477899999997      455532 222  12235899999977321               22


Q ss_pred             CeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCC-------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChh
Q 019699          157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPC-------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE  229 (337)
Q Consensus       157 rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~-------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~  229 (337)
                      . .++.+|..+.  ....+||+||+|...... |-.       ..|. +.-+.- +.+.|+|||.|++-.-     ... 
T Consensus       154 ~-~~IqGD~~~~--~~~~k~DLVISDMAPNtT-G~~D~d~~Rs~~L~-ElALdf-A~~~LkpGGsFvVKVF-----QGs-  221 (344)
T 3r24_A          154 D-STLIGDCATV--HTANKWDLIISDMYDPRT-KHVTKENDSKEGFF-TYLCGF-IKQKLALGGSIAVKIT-----EHS-  221 (344)
T ss_dssp             S-EEEESCGGGE--EESSCEEEEEECCCCTTS-CSSCSCCCCCCTHH-HHHHHH-HHHHEEEEEEEEEEEC-----SSS-
T ss_pred             C-eEEEcccccc--ccCCCCCEEEecCCCCcC-CccccchhHHHHHH-HHHHHH-HHHhCcCCCEEEEEEe-----cCC-
Confidence            3 4489997553  234789999999974322 210       1122 333443 6789999999988751     111 


Q ss_pred             HHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEec
Q 019699          230 VFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASD  266 (337)
Q Consensus       230 ~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as~  266 (337)
                      .. +.+..+++.|..|..+..  .+.. ..=.|++|..
T Consensus       222 g~-~~L~~lrk~F~~VK~fK~--ASRa~SsEvYLVG~g  256 (344)
T 3r24_A          222 WN-ADLYKLMGHFSWWTAFVT--NVNASSSEAFLIGAN  256 (344)
T ss_dssp             CC-HHHHHHHTTEEEEEEEEE--GGGTTSSCEEEEEEE
T ss_pred             CH-HHHHHHHhhCCeEEEECC--CCCCCCeeEEEEeee
Confidence            11 234556679999988852  2222 2235777753

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.34  E-value=0.00047  Score=62.80  Aligned_cols=130  Identities=13%  Similarity=0.002  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe---EEEEc-cHHHHHhhcCCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL---ELVIN-DARAELESRKES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv---~v~~~-D~~~~l~~~~~~  175 (337)
                      ..+..+|+||||+-|+.+..+++..++..|.+..|-... .    -.|...   ..+.+   ++..+ |.++   ..+.+
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~---~~~Gv~~i~~~~G~Df~~---~~~~~  139 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLM---QSYGWNIVTMKSGVDVFY---KPSEI  139 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCC---CSTTGGGEEEECSCCGGG---SCCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcc---cCCCceEEEeeccCCccC---CCCCC
Confidence            355789999999999999999886444454554443321 0    011110   01344   34436 8765   22468


Q ss_pred             eeEEEEeCCCCCCCCCC-cCCchHHHHHHHhccccCCCc-eEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          176 YDVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~G-vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      +|+|++|... ....+. .+.-+..-+.. +.+.|+||| .|++-.-.+    ..+.+.+.++.++..|..+.
T Consensus       140 ~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~-A~~~Lk~gG~~FvvKVFqg----~~~~~~~~l~~lk~~F~~vk  206 (269)
T 2px2_A          140 SDTLLCDIGE-SSPSAEIEEQRTLRILEM-VSDWLSRGPKEFCIKILCP----YMPKVIEKLESLQRRFGGGL  206 (269)
T ss_dssp             CSEEEECCCC-CCSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEE
T ss_pred             CCEEEeCCCC-CCCccHHHHHHHHHHHHH-HHHHhhcCCcEEEEEECCC----CchHHHHHHHHHHHHcCCEE
Confidence            9999999873 321111 01112224454 568999999 898875211    12566677889999999987

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.33  E-value=0.00038  Score=65.92  Aligned_cols=76  Identities=22%  Similarity=0.282  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---HhhcC--C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK--E  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~~--~  174 (337)
                      .+...++|..+|.|+-++++++. .+..+|+++|.||++++.|+ .+       .++|++++.++..++   +...+  +
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-------~~~Rv~lv~~nF~~l~~~L~~~g~~~  127 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-------DDPRFSIIHGPFSALGEYVAERDLIG  127 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-------CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-------cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence            34578999999999999999987 45679999999999999995 33       247999999987665   44332  3


Q ss_pred             ceeEEEEeCC
Q 019699          175 SYDVIIGDLA  184 (337)
Q Consensus       175 ~yDvIi~D~~  184 (337)
                      ++|.|+.|+-
T Consensus       128 ~vDgILfDLG  137 (347)
T 3tka_A          128 KIDGILLDLG  137 (347)
T ss_dssp             CEEEEEEECS
T ss_pred             cccEEEECCc
Confidence            6999999985

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.27  E-value=0.0003  Score=67.25  Aligned_cols=59  Identities=8%  Similarity=0.096  Sum_probs=50.4

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      ...||+||-|.|.+++.+++.....+|++||+|+..+...++.+ .      .++++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~------~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E------GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T------TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c------CCCEEEEECCccch
Confidence            47899999999999999998633468999999999999888765 1      36899999999765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.24  E-value=0.0016  Score=58.65  Aligned_cols=133  Identities=15%  Similarity=0.080  Sum_probs=89.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc-cHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~-D~~~~l~~~~~~yDvI  179 (337)
                      ....+|||||++.|+....++...++.+|.++|+-+.-.     ..|..-..+.-+-+++..+ |. .++.  +.++|.|
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-----e~P~~~~s~gwn~v~fk~gvDv-~~~~--~~~~Dtl  148 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-----EEPVPMSTYGWNIVKLMSGKDV-FYLP--PEKCDTL  148 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-----CCCCCCCCTTTTSEEEECSCCG-GGCC--CCCCSEE
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-----cCcchhhhcCcCceEEEeccce-eecC--CccccEE
Confidence            345699999999999999998888888999999966322     1121112233467889888 85 2333  3679999


Q ss_pred             EEeCCCCCCCCCC-cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       180 i~D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ++|... ....|. .+--|...++. +.+.|++ |-+++-.-.|.   .++ +.+.++.|+..|..+...
T Consensus       149 lcDIge-Ss~~~~vE~~RtlrvLel-a~~wL~~-~~fc~KVl~py---~p~-v~e~l~~lq~~fgg~lVR  211 (267)
T 3p8z_A          149 LCDIGE-SSPSPTVEESRTIRVLKM-VEPWLKN-NQFCIKVLNPY---MPT-VIEHLERLQRKHGGMLVR  211 (267)
T ss_dssp             EECCCC-CCSCHHHHHHHHHHHHHH-HGGGCSS-CEEEEEESCCC---SHH-HHHHHHHHHHHHCCEEEC
T ss_pred             EEecCC-CCCChhhhhhHHHHHHHH-HHHhccc-CCEEEEEccCC---Chh-HHHHHHHHHHHhCCEeEe
Confidence            999974 211121 11223345665 6789998 88888876552   333 446678889999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.19  E-value=0.0028  Score=60.08  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=91.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-CceeEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVI  179 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~yDvI  179 (337)
                      +.+|+++.+|.|++...+.+..- ...|.++|+|+..++..+.+++.         ..++.+|..++.... . ..+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~---------~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH---------TQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc---------cccccCCHHHccHhHcCcCCcCEE
Confidence            45899999999999998887521 35799999999999999998742         246778877653221 1 269999


Q ss_pred             EEeCCC-CCC-CCCC-------cCCchHHHHHHHhccccC--CCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          180 IGDLAD-PIE-GGPC-------YKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       180 i~D~~d-p~~-~~p~-------~~L~t~ef~~~~~~~~L~--p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      +.+++- +.. .+..       ..|+ .+|++. + +.++  |.-+++=|..  + +.....+..+.+.|++.-=.+...
T Consensus        73 ~~gpPCq~fS~ag~~~g~~d~r~~l~-~~~~~~-i-~~~~~~P~~~~~ENV~--~-l~~~~~~~~i~~~l~~~GY~v~~~  146 (343)
T 1g55_A           73 LMSPPCQPFTRIGRQGDMTDSRTNSF-LHILDI-L-PRLQKLPKYILLENVK--G-FEVSSTRDLLIQTIENCGFQYQEF  146 (343)
T ss_dssp             EECCC------------------CHH-HHHHHH-G-GGCSSCCSEEEEEEET--T-GGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEcCCCcchhhcCCcCCccCccchHH-HHHHHH-H-HHhcCCCCEEEEeCCc--c-ccCHHHHHHHHHHHHHCCCeeEEE
Confidence            999871 111 1110       1122 356664 4 5677  8877665552  2 224456777777777642122222


Q ss_pred             EeeccccC----CceEEEEEecCC
Q 019699          249 SAHIPSFA----DTWGWIMASDSP  268 (337)
Q Consensus       249 ~~~vP~~~----~~~~~~~as~~p  268 (337)
                      ...-..|+    ..-.|++|++..
T Consensus       147 vl~a~~~GvPQ~R~R~~iv~~~~~  170 (343)
T 1g55_A          147 LLSPTSLGIPNSRLRYFLIAKLQS  170 (343)
T ss_dssp             EECGGGGTCSCCCCEEEEEEEESS
T ss_pred             EEEHHHCCCCCcccEEEEEEEeCC
Confidence            22222332    235688887653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.98  E-value=0.0013  Score=66.17  Aligned_cols=81  Identities=11%  Similarity=0.040  Sum_probs=58.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc----CC---------CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH----KT---------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~----~~---------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~  167 (337)
                      ....+|++-.||+|+++..+.++    ..         ...+.++|+|+....+|+-++-.+.    ....++..+|...
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg----~~~~~I~~~dtL~  291 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG----LEYPRIDPENSLR  291 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT----CSCCEEECSCTTC
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC----Ccccccccccccc
Confidence            34568999999999998776653    11         2469999999999999998876543    2334678888764


Q ss_pred             HH-hh--cCCceeEEEEeCCC
Q 019699          168 EL-ES--RKESYDVIIGDLAD  185 (337)
Q Consensus       168 ~l-~~--~~~~yDvIi~D~~d  185 (337)
                      +- ..  ...+||+|+.++|-
T Consensus       292 ~~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          292 FPLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             SCGGGCCGGGCBSEEEECCCS
T ss_pred             CchhhhcccccceEEEecCCC
Confidence            31 11  13579999999974

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.86  E-value=0.0058  Score=58.93  Aligned_cols=111  Identities=11%  Similarity=-0.022  Sum_probs=68.5

Q ss_pred             CCeEEEEecchhHHHHHHHhc-----------------CCCcEEEEEECC-----------hHHHHHHHhhhhhccCCCC
Q 019699          103 PKTIFIMGGGEGSTAREILRH-----------------KTVEKVVMCDID-----------EEVVEFCKSYLVVNKEAFS  154 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~-----------------~~~~~v~~VEid-----------~~vi~~a~~~f~~~~~~~~  154 (337)
                      +-+|+|+||++|..+..++..                 .+.-+|...|+-           |...+..++..+      .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------~  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------R  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC------C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc------C
Confidence            688999999999876655443                 234567777775           333332222111      1


Q ss_pred             CCCeEEEEccHHHHHhh--cCCceeEEEEeCCCCCCCCCCcCCch---------------------------------HH
Q 019699          155 DPRLELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT---------------------------------KS  199 (337)
Q Consensus       155 d~rv~v~~~D~~~~l~~--~~~~yDvIi~D~~dp~~~~p~~~L~t---------------------------------~e  199 (337)
                      ..+-.++.+.+..|-.+  ..+++|+|++...-+|-...+..|..                                 ..
T Consensus       127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            12346677777776544  25889999999987664333222221                                 12


Q ss_pred             HHHHHhccccCCCceEEEeCC
Q 019699          200 FYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       200 f~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++. .++.|+|||.+++...
T Consensus       207 FL~~-Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          207 FLRI-HSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHH-HHHHEEEEEEEEEEEE
T ss_pred             HHHH-HHHHhccCCeEEEEEe
Confidence            4665 5799999999998763

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.82  E-value=0.0013  Score=60.96  Aligned_cols=134  Identities=13%  Similarity=0.032  Sum_probs=86.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc-cHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~-D~~~~l~~~~~~yDvI  179 (337)
                      ....+||+|||+.|+....++...++.+|.++|+-..--+     .|..-..+.-+-++++.+ |. .++..  ..+|+|
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-----~P~~~~ql~w~lV~~~~~~Dv-~~l~~--~~~D~i  164 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-----EPQLVQSYGWNIVTMKSGVDV-FYRPS--ECCDTL  164 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-----CCCCCCBTTGGGEEEECSCCT-TSSCC--CCCSEE
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-----CcchhhhcCCcceEEEeccCH-hhCCC--CCCCEE
Confidence            3456999999999999998888888889999999654110     111101122233666666 64 23433  679999


Q ss_pred             EEeCCCCCCCCCC-cCCchHHHHHHHhccccCCC-ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       180 i~D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~-Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ++|..... ..|. ..--|...++. +.+.|+++ |-|++-.-.|+   .+ .+.+.++.|+..|..+...
T Consensus       165 vcDigeSs-~~~~ve~~Rtl~vLel-~~~wL~~~~~~f~~KVl~pY---~~-~v~e~l~~lq~~fgg~lvr  229 (321)
T 3lkz_A          165 LCDIGESS-SSAEVEEHRTIRVLEM-VEDWLHRGPREFCVKVLCPY---MP-KVIEKMELLQRRYGGGLVR  229 (321)
T ss_dssp             EECCCCCC-SCHHHHHHHHHHHHHH-HHHHHTTCCCEEEEEESCTT---SH-HHHHHHHHHHHHHCCEEEC
T ss_pred             EEECccCC-CChhhhhhHHHHHHHH-HHHHhccCCCcEEEEEcCCC---Ch-HHHHHHHHHHHHhCCEeEe
Confidence            99997321 1111 11122335565 57889988 89999875552   23 4446778899999987654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.64  E-value=0.041  Score=51.77  Aligned_cols=148  Identities=12%  Similarity=0.107  Sum_probs=95.5

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ..+|+++.+|.|++...+.+. +...+.+||+|+..++..+.+++..      .     .+|..++....-..+|+|+.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~------~-----~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------P-----EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------C-----BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC------C-----cCCHHHcCHhhCCCCCEEEEC
Confidence            468999999999999998875 5677899999999999999987531      1     588877655444569999999


Q ss_pred             CCC-CCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCceeEEEee
Q 019699          183 LAD-PIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAH  251 (337)
Q Consensus       183 ~~d-p~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v~~~~~~  251 (337)
                      ++- +.. .+       +-..|+ .+|.+. + +.++|.-+++=|..  +...  ....+..+.+.|++.-=.+......
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L~-~~~~r~-i-~~~~P~~~~~ENV~--gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~  153 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTLF-FDIARI-V-REKKPKVVFMENVK--NFASHDNGNTLEVVKNTMNELDYSFHAKVLN  153 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHH-HHHHHH-H-HHHCCSEEEEEEEG--GGGTGGGGHHHHHHHHHHHHTTBCCEEEEEE
T ss_pred             CCCCCcchhcccCCCcchhhHHH-HHHHHH-H-HhccCcEEEEeCcH--HHHhccccHHHHHHHHHHHhCCCEEEEEEEE
Confidence            872 221 11       111232 467774 4 46799877666652  2222  2346777778887653223333333


Q ss_pred             ccccC----CceEEEEEecC
Q 019699          252 IPSFA----DTWGWIMASDS  267 (337)
Q Consensus       252 vP~~~----~~~~~~~as~~  267 (337)
                      -..|+    ..-.|++|++.
T Consensus       154 a~~~GvPQ~R~R~~iv~~~~  173 (327)
T 2c7p_A          154 ALDYGIPQKRERIYMICFRN  173 (327)
T ss_dssp             GGGGTCSBCCEEEEEEEEBG
T ss_pred             HHHcCCCccceEEEEEEEeC
Confidence            33443    23457888754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.63  E-value=0.0019  Score=61.90  Aligned_cols=71  Identities=10%  Similarity=0.084  Sum_probs=54.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+|||||++.|+.+..++++  ..+|++||+-+-- ...          ..+|+|+++.+|+..+... .+.+|+|+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-~~l----------~~~~~V~~~~~d~~~~~~~-~~~~D~vv  275 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-QSL----------MDTGQVTWLREDGFKFRPT-RSNISWMV  275 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-HHH----------HTTTCEEEECSCTTTCCCC-SSCEEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-hhh----------ccCCCeEEEeCccccccCC-CCCcCEEE
Confidence            45689999999999999999987  3689999975411 111          1368999999999887533 36799999


Q ss_pred             EeCCC
Q 019699          181 GDLAD  185 (337)
Q Consensus       181 ~D~~d  185 (337)
                      +|...
T Consensus       276 sDm~~  280 (375)
T 4auk_A          276 CDMVE  280 (375)
T ss_dssp             ECCSS
T ss_pred             EcCCC
Confidence            99863

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.36  E-value=0.0014  Score=54.84  Aligned_cols=39  Identities=18%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             CCCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECChHHHH
Q 019699          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVE  140 (337)
Q Consensus       101 ~~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~~vi~  140 (337)
                      ..+.+||+||+|.| ..+..|.++. ...|+++||+|..++
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~   73 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc
Confidence            45679999999999 6898888754 368999999986655

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.33  E-value=0.005  Score=59.23  Aligned_cols=118  Identities=11%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHh--------c-------CCCcEEEEEECChHHHHHHHhhhhhccCCC--------CCCC
Q 019699          101 PNPKTIFIMGGGEGSTAREILR--------H-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--------SDPR  157 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~--------~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~--------~d~r  157 (337)
                      +.+-+|+|+|||+|..+..++.        +       ++.-+|...|+-..-....=+.++.....+        ...+
T Consensus        51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence            4568999999999987766521        1       245567777776554433322232211000        0112


Q ss_pred             eEEEEccHHHHHhh--cCCceeEEEEeCCCCCCCCCCcCCch--------------------------------HHHHHH
Q 019699          158 LELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT--------------------------------KSFYEF  203 (337)
Q Consensus       158 v~v~~~D~~~~l~~--~~~~yDvIi~D~~dp~~~~p~~~L~t--------------------------------~ef~~~  203 (337)
                      -.++.+.+..|-.+  ..+++|+|++...-+|-...+..+..                                ..|++.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            23555666555433  25789999999987764332222210                                236776


Q ss_pred             HhccccCCCceEEEeC
Q 019699          204 VVKPRLNPEGIFVTQA  219 (337)
Q Consensus       204 ~~~~~L~p~Gvlv~~~  219 (337)
                       .++.|+|||.+++..
T Consensus       211 -ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          211 -RAAEVKRGGAMFLVC  225 (374)
T ss_dssp             -HHHHEEEEEEEEEEE
T ss_pred             -HHHHhCCCCEEEEEE
Confidence             689999999998875

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.32  E-value=0.062  Score=51.50  Aligned_cols=148  Identities=17%  Similarity=0.187  Sum_probs=90.8

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-------cCCce
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-------RKESY  176 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-------~~~~y  176 (337)
                      -+|+++.+|.|++...+.+. +...+.+||+|+..++..+.+++         ...++.+|..++..+       ....+
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~---------~~~~~~~DI~~~~~~~~~~~~~~~~~~   72 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFP---------RSLHVQEDVSLLNAEIIKGFFKNDMPI   72 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCT---------TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCC---------CCceEecChhhcCHHHHHhhcccCCCe
Confidence            47999999999999888775 45678899999999999888763         456777887654221       13679


Q ss_pred             eEEEEeCCC-CCC-CCCC------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCce-
Q 019699          177 DVIIGDLAD-PIE-GGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYV-  245 (337)
Q Consensus       177 DvIi~D~~d-p~~-~~p~------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v-  245 (337)
                      |+|+.+++= +.. .+..      ..|+ .+|++. + +.++|.-+++=|..  +...  ....++.+. .|.+.-=.+ 
T Consensus        73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L~-~~~~~~-v-~~~~P~~~v~ENV~--gl~s~~~~~~~~~i~-~l~~~GY~v~  146 (376)
T 3g7u_A           73 DGIIGGPPCQGFSSIGKGNPDDSRNQLY-MHFYRL-V-SELQPLFFLAENVP--GIMQEKYSGIRNKAF-NLVSGDYDIL  146 (376)
T ss_dssp             CEEEECCCCCTTC-------CHHHHHHH-HHHHHH-H-HHHCCSEEEEEECT--TTTCGGGHHHHHHHH-HHHHTTEEEC
T ss_pred             eEEEecCCCCCcccccCCCCCCchHHHH-HHHHHH-H-HHhCCCEEEEecch--HhhccCcHHHHHHHH-HHHcCCCccC
Confidence            999999872 221 1110      1122 456664 3 56899887776753  2221  234566666 666542112 


Q ss_pred             eEEEeeccccC----CceEEEEEecC
Q 019699          246 VPYSAHIPSFA----DTWGWIMASDS  267 (337)
Q Consensus       246 ~~~~~~vP~~~----~~~~~~~as~~  267 (337)
                      .........||    ..-.|++|++.
T Consensus       147 ~~~vl~a~dyGvPQ~R~R~~iig~r~  172 (376)
T 3g7u_A          147 DPIKVKASDYGAPTIRTRYFFIGVKK  172 (376)
T ss_dssp             CCEEEEGGGGTCSBCCEEEEEEEEEG
T ss_pred             cEEEEEHhhCCCCCCCcEEEEEEEeC
Confidence            21222223332    23457888753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.24  E-value=0.0069  Score=56.00  Aligned_cols=46  Identities=11%  Similarity=0.061  Sum_probs=40.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~  148 (337)
                      .+...||+++||+|+++.++++.  ..++++||+++.+++.|++.+..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHH
Confidence            55679999999999999999886  36899999999999999998753

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.22  E-value=0.004  Score=59.52  Aligned_cols=116  Identities=10%  Similarity=0.039  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHh----------------cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILR----------------HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN  163 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~----------------~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~  163 (337)
                      .+++-+|+|+||++|..+..+..                ..+.-+|...|+-..-....-+.++...   ...+-.++.+
T Consensus        49 ~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~~~~~~f~~g  125 (359)
T 1m6e_X           49 VTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFING  125 (359)
T ss_dssp             SSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEE
T ss_pred             CCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---ccCCCEEEEe
Confidence            35667899999999965432222                1345678899998888777766665321   1124577778


Q ss_pred             cHHHHHhh--cCCceeEEEEeCCCCCCCCCCcC--------------------Cch-------HHHHHHHhccccCCCce
Q 019699          164 DARAELES--RKESYDVIIGDLADPIEGGPCYK--------------------LYT-------KSFYEFVVKPRLNPEGI  214 (337)
Q Consensus       164 D~~~~l~~--~~~~yDvIi~D~~dp~~~~p~~~--------------------L~t-------~ef~~~~~~~~L~p~Gv  214 (337)
                      .+..|-.+  ..+++|+|++...-+|-...+..                    .|.       ..|++. .++.|+|||.
T Consensus       126 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~-Ra~EL~pGG~  204 (359)
T 1m6e_X          126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC-RAQEVVPGGR  204 (359)
T ss_dssp             EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH-HHHHBCTTCE
T ss_pred             cchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCce
Confidence            87777544  25889999999986664322211                    332       236775 6899999999


Q ss_pred             EEEeC
Q 019699          215 FVTQA  219 (337)
Q Consensus       215 lv~~~  219 (337)
                      +++..
T Consensus       205 mvl~~  209 (359)
T 1m6e_X          205 MVLTI  209 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98875

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.72  E-value=0.21  Score=46.98  Aligned_cols=150  Identities=14%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             CeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEEE
Q 019699          104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi  180 (337)
                      -+++++.+|.|++...+.+.. +...|.++|+|+...+.-+.+|+.         ..++.+|..++..+.  ...+|+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~---------~~~~~~DI~~~~~~~~~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE---------TNLLNRNIQQLTPQVIKKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC---------CceeccccccCCHHHhccCCCCEEE
Confidence            489999999999998887642 125688999999999999988753         235667776543221  13699999


Q ss_pred             EeCCC-CCC-C-------CCCcCCchHHHHHHHhccccC-CCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEe
Q 019699          181 GDLAD-PIE-G-------GPCYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA  250 (337)
Q Consensus       181 ~D~~d-p~~-~-------~p~~~L~t~ef~~~~~~~~L~-p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~  250 (337)
                      ..++= +.. .       .+-..|+ .+|++. + +.++ |.=+++=|..  + +.....+..+.+.|++.-=.+.....
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~-~~~~r~-i-~~~~~P~~~vlENV~--g-l~~~~~~~~i~~~l~~~GY~v~~~vl  148 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSF-LYLIGI-L-DQLDNVDYILMENVK--G-FENSTVRNLFIDKLKECNFIYQEFLL  148 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCH-HHHHHH-G-GGCTTCCEEEEEECT--T-GGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ecCCCcchhhhhhccCCcCcccccH-HHHHHH-H-HHhcCCCEEEEecch--h-hhhhhHHHHHHHHHHhCCCeEEEEEe
Confidence            88762 211 0       1112343 467774 4 4565 8877776752  2 23344567777777765222332223


Q ss_pred             eccccC----CceEEEEEecCC
Q 019699          251 HIPSFA----DTWGWIMASDSP  268 (337)
Q Consensus       251 ~vP~~~----~~~~~~~as~~p  268 (337)
                      .-..|+    ..-.|++|++..
T Consensus       149 ~a~~~GvPQ~R~R~fiva~r~~  170 (333)
T 4h0n_A          149 CPSTVGVPNSRLRYYCTARRNN  170 (333)
T ss_dssp             CTTTTTCSCCCCEEEEEEEETT
T ss_pred             cHHHcCCCccceEEEEEEEeCC
Confidence            323343    235688898754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.67  E-value=0.03  Score=52.30  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...++||++|+|+ |.++..++++.+. +|++++.+++-.+.++++-...       -+.....|..+.+.+..+.+|+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~-------~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEV-------AVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCE-------EEeCCCcCHHHHHHHhCCCCCEE
Confidence            4568999999875 7888888887754 8999999999999998752110       00001134555555444579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |.....            .+.++. +.+.|+++|.++.-.
T Consensus       237 id~~g~------------~~~~~~-~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          237 LVTAVS------------PKAFSQ-AIGMVRRGGTIALNG  263 (340)
T ss_dssp             EESSCC------------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEeCCC------------HHHHHH-HHHHhccCCEEEEeC
Confidence            865421            134555 568899999988653

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.53  E-value=0.14  Score=46.43  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-------CCCcEEEEEE-----CChH-----------------------HHHHHH--
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCD-----IDEE-----------------------VVEFCK--  143 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-------~~~~~v~~VE-----id~~-----------------------vi~~a~--  143 (337)
                      .-|..|+++|.--|+.+..++..       ....+|.++|     ..+.                       +-++.+  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            66889999999999887765431       2457899988     2210                       111111  


Q ss_pred             hhhhhccCCCCCCCeEEEEccHHHHHhh----c-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          144 SYLVVNKEAFSDPRLELVINDARAELES----R-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       144 ~~f~~~~~~~~d~rv~v~~~D~~~~l~~----~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +.+..  -...+++++++.|++.+-|..    . ..++|+|.+|.- -       .--+...|+. +..+|+|||++++.
T Consensus       148 ~~~~~--~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-~-------Y~~t~~~le~-~~p~l~~GGvIv~D  216 (257)
T 3tos_A          148 ECSDF--FGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-L-------YEPTKAVLEA-IRPYLTKGSIVAFD  216 (257)
T ss_dssp             HTTST--TTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-C-------HHHHHHHHHH-HGGGEEEEEEEEES
T ss_pred             hhhhh--cCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-c-------cchHHHHHHH-HHHHhCCCcEEEEc
Confidence            11110  011247999999999987754    2 357999999973 1       1125677887 78999999999986


Q ss_pred             C
Q 019699          219 A  219 (337)
Q Consensus       219 ~  219 (337)
                      -
T Consensus       217 D  217 (257)
T 3tos_A          217 E  217 (257)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.41  E-value=0.091  Score=49.40  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-----ccHHHHHhhc--
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELESR--  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-----~D~~~~l~~~--  172 (337)
                      ...++||++|+|+ |.++..+++..+..+|++++.+++-.+.+++. ..       .-+....     .|..+.+++.  
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-------~~~~~~~~~~~~~~~~~~v~~~t~  249 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-------EVVTHKVERLSAEESAKKIVESFG  249 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-------TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-------hcccccccccchHHHHHHHHHHhC
Confidence            5568999999875 67778888887665699999999999999986 21       1122221     3334444332  


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+.+|+||--..     +       ...++. +.+.|+++|.++.-.
T Consensus       250 g~g~Dvvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          250 GIEPAVALECTG-----V-------ESSIAA-AIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SCCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECC
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEc
Confidence            357999985432     1       124455 567899999988653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.32  E-value=0.15  Score=47.88  Aligned_cols=96  Identities=14%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE------ccHHHHHhh-c
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~------~D~~~~l~~-~  172 (337)
                      ....+||++|+|+ |.++..+++..+..+|++++.+++-.+.++++-.       +   .++.      .|..+-+.+ .
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~---~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-------D---LVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------S---EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------C---EEEcCcccccchHHHHHHHHh
Confidence            4568999999875 6777788887765589999999999999887521       1   1221      122222322 2


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+.+|+||-...     .       ...++. +.+.|+++|.++.-.
T Consensus       240 ~~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 GCKPEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLVG  273 (356)
T ss_dssp             TSCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEe
Confidence            356999985432     1       123444 567899999987643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.18  E-value=0.4  Score=44.49  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=58.6

Q ss_pred             CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-HHhhcCCceeEE
Q 019699          103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDVI  179 (337)
Q Consensus       103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-~l~~~~~~yDvI  179 (337)
                      .++|.+||+|  ++.+++.+.+.....+|+++|.+++.++.+++.-..      +    -...|..+ .+    ...|+|
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~------~----~~~~~~~~~~~----~~aDvV   98 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------D----EGTTSIAKVED----FSPDFV   98 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------S----EEESCTTGGGG----GCCSEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc------c----hhcCCHHHHhh----ccCCEE
Confidence            4789999998  345566666643223899999999988877653110      0    12233333 22    358999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+-.+..         ...+.++. +...|+++.+++-.
T Consensus        99 ilavp~~---------~~~~vl~~-l~~~l~~~~iv~d~  127 (314)
T 3ggo_A           99 MLSSPVR---------TFREIAKK-LSYILSEDATVTDQ  127 (314)
T ss_dssp             EECSCGG---------GHHHHHHH-HHHHSCTTCEEEEC
T ss_pred             EEeCCHH---------HHHHHHHH-HhhccCCCcEEEEC
Confidence            9987521         13567777 67788888766543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.08  E-value=0.23  Score=45.96  Aligned_cols=147  Identities=13%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~  184 (337)
                      +|+++-+|.|++..-+.+. +..-+-++|+|+..++.-+.+++.          +++.+|..+.-.+.-...|+|+--++
T Consensus         2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~~----------~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCCS----------EEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCCC----------CcccCChhhCCHhhCCcccEEEecCC
Confidence            7999999999998777664 466778999999999998887642          56788977654333357899987775


Q ss_pred             -CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC--CChhHHHHHHHHHhhhcCceeEEEeecc
Q 019699          185 -DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQVFKYVVPYSAHIP  253 (337)
Q Consensus       185 -dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~--~~~~~~~~i~~~l~~vF~~v~~~~~~vP  253 (337)
                       -+.. .+       +-..|+ .+|++. + +.++|.-+++=|..  ++.  ...+.+..+++.|.+.-=.+........
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~-~~~~r~-i-~~~~Pk~~~~ENV~--gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~  145 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLF-YEYIRI-L-KQKKPIFFLAENVK--GMMAQRHNKAVQEFIQEFDNAGYDVHIILLNAN  145 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHH-HHHHHH-H-HHHCCSEEEEEECC--GGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGG
T ss_pred             CCCcCCCCCccCCCCchhHHH-HHHHHH-H-hccCCeEEEeeeec--ccccccccchhhhhhhhhccCCcEEEEEecccc
Confidence             1110 01       111232 456664 3 56899877766652  222  2346777888888876323443334444


Q ss_pred             ccC----CceEEEEEecC
Q 019699          254 SFA----DTWGWIMASDS  267 (337)
Q Consensus       254 ~~~----~~~~~~~as~~  267 (337)
                      .||    ..=.|++|+++
T Consensus       146 ~yGvPQ~R~Rvfivg~r~  163 (331)
T 3ubt_Y          146 DYGVAQDRKRVFYIGFRK  163 (331)
T ss_dssp             GTTCSBCCEEEEEEEEEG
T ss_pred             cCCCCcccceEEEEEEcC
Confidence            443    22357888753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.03  E-value=0.04  Score=52.13  Aligned_cols=99  Identities=13%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ...++||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .     +.....|..+-+.+ ..+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--v-----i~~~~~~~~~~~~~~~~gg~D~  261 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH--V-----INSKTQDPVAAIKEITDGGVNF  261 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE--E-----EETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCE--E-----ecCCccCHHHHHHHhcCCCCcE
Confidence            4568999999876 677778888766558999999999999998752110  0     00001233344433 2347999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||--..     .       .+.++. +.+.|+++|.++.-.
T Consensus       262 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          262 ALESTG-----S-------PEILKQ-GVDALGILGKIAVVG  289 (371)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEeC
Confidence            984432     1       134455 568999999987643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.89  E-value=0.042  Score=51.58  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=64.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~yD  177 (337)
                      ....+||++|+|. |.++..++++.+..+|++++.+++-.+.++++-...  .     +.....|..+.+.+ + ...+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--v-----i~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD--I-----INYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE--E-----ECGGGSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce--E-----EcCCCcCHHHHHHHHcCCCCCC
Confidence            4568999999875 667788888776668999999999999998852110  0     00011344444443 2 24699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||-....     +       +.++. +.+.|+++|.++.-.
T Consensus       238 ~v~d~~g~-----~-------~~~~~-~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          238 KVVIAGGD-----V-------HTFAQ-AVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCCC-----h-------HHHHH-HHHHHhcCCEEEEec
Confidence            99843321     1       22344 567899999987643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.85  E-value=0.045  Score=51.92  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh----cCCc
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~----~~~~  175 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ |.    ...|..+.+.+    +.+.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--vi-~~----~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA--TV-DP----SAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE--EE-CT----TSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE--EE-CC----CCcCHHHHHHhhhhccCCC
Confidence            5678999999875 667788888777669999999999999998852110  00 00    12355555554    2347


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+||-...     .       .+.++. +.+.|+++|.++.-.
T Consensus       254 ~Dvvid~~G-----~-------~~~~~~-~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          254 VDVVIECAG-----V-------AETVKQ-STRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             CCEEEECCC-----C-------HHHHHH-HHHHhccCCEEEEEe
Confidence            999984332     1       134455 567899999988643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.77  E-value=0.03  Score=52.41  Aligned_cols=66  Identities=24%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             CCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCC-CCcC-------CchHHHHHHHhccccCCCceEEEeCC
Q 019699          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIEGG-PCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       154 ~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~-p~~~-------L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ...+.+++.+|+++.++.. .+++|+|++|++-..... -...       -+..+.++. ++++|+|+|.++++.+
T Consensus        11 ~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~-~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           11 TTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             ECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEC
T ss_pred             ecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHH-HHHHCcCCcEEEEEEC
Confidence            4568899999999998764 468999999997432100 0000       023456777 6899999999998865

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.75  E-value=0.23  Score=46.97  Aligned_cols=99  Identities=20%  Similarity=0.313  Sum_probs=57.8

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+++||++|+|.-+ .+..+++..+. +|+++|.+++-.+.+++.+..        .+.++..+...+.+. -..+|+||
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~DvVI  235 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--------RVELLYSNSAEIETA-VAEADLLI  235 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHHHHH-HHTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHHHHH-HcCCCEEE
Confidence            45899999986433 34444555554 899999999988887765432        122232222222111 12599998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .-...+.  .+...+.+.+.     .+.|+++|+++-
T Consensus       236 ~~~~~~~--~~~~~li~~~~-----~~~~~~g~~ivd  265 (361)
T 1pjc_A          236 GAVLVPG--RRAPILVPASL-----VEQMRTGSVIVD  265 (361)
T ss_dssp             ECCCCTT--SSCCCCBCHHH-----HTTSCTTCEEEE
T ss_pred             ECCCcCC--CCCCeecCHHH-----HhhCCCCCEEEE
Confidence            7655433  22234444432     356889998764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.67  E-value=0.028  Score=50.77  Aligned_cols=62  Identities=11%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             CeEEEEccHHHHHhhcC-CceeEEEEeCCCCCCCCCCcCC--------chHHHHHHHhccccCCCceEEEeC
Q 019699          157 RLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       157 rv~v~~~D~~~~l~~~~-~~yDvIi~D~~dp~~~~p~~~L--------~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..+++.+|+.++|+... +++|+|++|++-.....-...+        +..++++. ++++|+|+|+++++.
T Consensus         4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~-~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHH-HHHHhcCCeEEEEEc
Confidence            35689999999998754 6899999999843210000011        33556676 689999999998874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.64  E-value=0.059  Score=48.62  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~  148 (337)
                      ..+...|||..+|+|+++.++.+.  ..+++++|+++..+++|++.+..
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHh
Confidence            356678999999999999999886  37899999999999999998753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.41  E-value=0.17  Score=47.92  Aligned_cols=94  Identities=20%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ....+||++|+|+ |.++..+++..+ .+|++++.+++-.+.++++ +..         .++..+-.+++++..+.+|+|
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL-GAD---------EVVNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TCS---------EEEETTCHHHHHTTTTCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc---------EEeccccHHHHHHhhcCCCEE
Confidence            4568999999875 667777887765 4699999999988988873 211         112111123444333579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |--...+       ..     ++. +.+.|+++|.++.-
T Consensus       262 id~~g~~-------~~-----~~~-~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          262 LNTVAAP-------HN-----LDD-FTTLLKRDGTMTLV  287 (369)
T ss_dssp             EECCSSC-------CC-----HHH-HHTTEEEEEEEEEC
T ss_pred             EECCCCH-------HH-----HHH-HHHHhccCCEEEEe
Confidence            8543211       11     233 46789999988754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.36  E-value=0.47  Score=44.45  Aligned_cols=152  Identities=18%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEE-EEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v-~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ..+-+|+++.+|.|++...+.+.. +...+ .++|+|+...+..+.+|+..          ++.+|..++-.+.  ...+
T Consensus         8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~~   77 (327)
T 3qv2_A            8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLNC   77 (327)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTCC
T ss_pred             CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCCC
Confidence            345689999999999998887752 13567 79999999999999988531          3445554432111  1269


Q ss_pred             eEEEEeCC-CCC--C-CC-------CCcCCchHHHHH-HHhcccc--CCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          177 DVIIGDLA-DPI--E-GG-------PCYKLYTKSFYE-FVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       177 DvIi~D~~-dp~--~-~~-------p~~~L~t~ef~~-~~~~~~L--~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      |+|+..++ .+.  . .+       +-..|+ .++.+ . + +.+  +|.-+++=|..  + +.....+..+.+.|++.-
T Consensus        78 Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~-~~~~r~~-i-~~~~~~P~~~~lENV~--g-l~~~~~~~~i~~~l~~~G  151 (327)
T 3qv2_A           78 NTWFMSPPCQPYNNSIMSKHKDINDPRAKSV-LHLYRDI-L-PYLINKPKHIFIENVP--L-FKESLVFKEIYNILIKNQ  151 (327)
T ss_dssp             CEEEECCCCTTCSHHHHTTTCTTTCGGGHHH-HHHHHTT-G-GGCSSCCSEEEEEECG--G-GGGSHHHHHHHHHHHHTT
T ss_pred             CEEEecCCccCcccccCCCCCCCccccchhH-HHHHHHH-H-HHhccCCCEEEEEchh--h-hcChHHHHHHHHHHHhCC
Confidence            99998876 222  1 01       100111 23444 3 2 345  67766665652  2 233456777778887653


Q ss_pred             CceeEEEeeccccC----CceEEEEEecCC
Q 019699          243 KYVVPYSAHIPSFA----DTWGWIMASDSP  268 (337)
Q Consensus       243 ~~v~~~~~~vP~~~----~~~~~~~as~~p  268 (337)
                      =.+.........|+    ..-.|++|++..
T Consensus       152 Y~v~~~vl~a~~yGvPQ~R~R~fivg~r~~  181 (327)
T 3qv2_A          152 YYIKDIICSPIDIGIPNSRTRYYVMARLTP  181 (327)
T ss_dssp             CEEEEEEECGGGGTCSBCCCEEEEEEESSC
T ss_pred             CEEEEEEEeHHHcCCCccceEEEEEEEeCC
Confidence            23333333333343    234688998754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.31  E-value=0.11  Score=48.57  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-..        .+--...|..+.+.+.  ...+|
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~--------~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD--------AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS--------EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC--------EEEcCCCcHHHHHHHHhCCCCCe
Confidence            4568999999865 66777788765567999999999999999875211        0100112333444332  24799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||--..     +       .+.++. +.+.|+++|.++.-.
T Consensus       242 ~v~d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          242 AVFDFVG-----A-------QSTIDT-AQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEC
Confidence            9885432     1       134555 568899999988643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.18  E-value=0.13  Score=48.37  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             CeEEEEecch-hHHH-HHHH-hcCCCcEEEEEECChH---HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          104 KTIFIMGGGE-GSTA-REIL-RHKTVEKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       104 ~~VLiIG~G~-G~~~-~~ll-~~~~~~~v~~VEid~~---vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .+||++|+|. |.++ ..++ +..+..+|++++.+++   -.+.++++-...-    +.+    ..|..+ +.+..+.+|
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v----~~~----~~~~~~-i~~~~gg~D  244 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV----DSR----QTPVED-VPDVYEQMD  244 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE----ETT----TSCGGG-HHHHSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc----CCC----ccCHHH-HHHhCCCCC
Confidence            8999999753 5667 7788 7766556999999988   7888876421110    111    123333 332223799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||--..     .+       ..++. +.+.|+++|.++.-.
T Consensus       245 vvid~~g-----~~-------~~~~~-~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          245 FIYEATG-----FP-------KHAIQ-SVQALAPNGVGALLG  273 (357)
T ss_dssp             EEEECSC-----CH-------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC-----Ch-------HHHHH-HHHHHhcCCEEEEEe
Confidence            9984332     11       23455 567899999987643

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.95  E-value=0.22  Score=46.25  Aligned_cols=99  Identities=17%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             CCCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      ....+||++|+|++ .++..++++....+|++++.+++=.+.+++.-...       -+.....|..+.+.+.  ...+|
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~-------~i~~~~~~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV-------TINSGDVNPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE-------EEEC-CCCHHHHHHHHTTSSCEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE-------EEeCCCCCHHHHhhhhcCCCCce
Confidence            45689999999865 44555666555689999999999888888764211       1222234555555443  24578


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++.+...     +       +.+.. ..+.|+++|.++.-.
T Consensus       235 ~~~~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          235 SAIVCAVA-----R-------IAFEQ-AVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEECCSC-----H-------HHHHH-HHHTEEEEEEEEECC
T ss_pred             EEEEeccC-----c-------chhhe-eheeecCCceEEEEe
Confidence            88876532     1       23344 467899999987654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.92  E-value=0.21  Score=44.37  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             HHHHhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEEC--ChHHHHHHHhhhhhccCCCCCCCeEEEEccH
Q 019699           90 ESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDA  165 (337)
Q Consensus        90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEi--d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~  165 (337)
                      |.|.+.|++..-..++||+||+|.=+..  +.+++.  ..+|++|+-  ++++.+++.+           .+++++..+ 
T Consensus        18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~l~~~-----------~~i~~i~~~-   83 (223)
T 3dfz_A           18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTVSAEINEWEAK-----------GQLRVKRKK-   83 (223)
T ss_dssp             ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSCCHHHHHHHHT-----------TSCEEECSC-
T ss_pred             cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHc-----------CCcEEEECC-
Confidence            5566678888888999999999965553  344443  357888854  4444444432           345555433 


Q ss_pred             HHHHhhcCCceeEEEEeCCC
Q 019699          166 RAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~d  185 (337)
                        |-...-..+|+||..+.+
T Consensus        84 --~~~~dL~~adLVIaAT~d  101 (223)
T 3dfz_A           84 --VGEEDLLNVFFIVVATND  101 (223)
T ss_dssp             --CCGGGSSSCSEEEECCCC
T ss_pred             --CCHhHhCCCCEEEECCCC
Confidence              212222569999987654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.89  E-value=0.28  Score=46.40  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ +.+-  ...|..+.+++ ..+.+|+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--vi-~~~~--~~~~~~~~i~~~~~gg~D~  266 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE--FV-NPKD--HDKPIQEVIVDLTDGGVDY  266 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE--EE-CGGG--CSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE--EE-cccc--CchhHHHHHHHhcCCCCCE
Confidence            4568999999864 667777888766668999999999999998752110  00 0000  01234444443 3348999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      ||--..     .       .+.++. +.+.|+++ |.+++-.
T Consensus       267 vid~~g-----~-------~~~~~~-~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          267 SFECIG-----N-------VSVMRA-ALECCHKGWGTSVIVG  295 (378)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             EEECCC-----C-------HHHHHH-HHHHhhccCCEEEEEc
Confidence            984432     1       134555 56899996 9887643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.88  E-value=0.29  Score=39.39  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCcee
Q 019699          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~yD  177 (337)
                      ..+|+++|+|. |.. ++.+.+.  ..+|+++|.|++.++.+++           ..+.++.+|+.  +.+++. -...|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~-----------~g~~~i~gd~~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE-----------RGVRAVLGNAANEEIMQLAHLECAK   73 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH-----------TTCEEEESCTTSHHHHHHTTGGGCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH-----------cCCCEEECCCCCHHHHHhcCcccCC
Confidence            36899999985 333 4444443  3589999999998887765           24567888874  345443 26799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++-.+++.     ..   .....  ..+.+.|+..++...
T Consensus        74 ~vi~~~~~~~-----~n---~~~~~--~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           74 WLILTIPNGY-----EA---GEIVA--SARAKNPDIEIIARA  105 (140)
T ss_dssp             EEEECCSCHH-----HH---HHHHH--HHHHHCSSSEEEEEE
T ss_pred             EEEEECCChH-----HH---HHHHH--HHHHHCCCCeEEEEE
Confidence            9998775421     01   11112  245677777666654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.88  E-value=0.067  Score=49.23  Aligned_cols=66  Identities=23%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             CCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCC-CC--CCcCC--------c---hHHHHHHHhccccCCCceEEEe
Q 019699          154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIE-GG--PCYKL--------Y---TKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       154 ~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~-~~--p~~~L--------~---t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .-.+++++.+|.+++++.. +++||+|++|++-... ..  ....+        +   -.++++. +.++|+|+|.+++.
T Consensus        18 ~~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~-~~rvLk~~G~l~i~   96 (297)
T 2zig_A           18 SFGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWRE-VFRLLVPGGRLVIV   96 (297)
T ss_dssp             ---CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             cccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHH-HHHHcCCCcEEEEE
Confidence            3457899999999998764 4789999999974211 00  00000        0   1235566 68999999999888


Q ss_pred             CC
Q 019699          219 AG  220 (337)
Q Consensus       219 ~~  220 (337)
                      .+
T Consensus        97 ~~   98 (297)
T 2zig_A           97 VG   98 (297)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.81  E-value=0.24  Score=47.50  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=59.4

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC------CCCeEEEEc----cHHHHHh
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------DPRLELVIN----DARAELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------d~rv~v~~~----D~~~~l~  170 (337)
                      .+.+|++||+|.-+ .+..+++..+ .+|+++|.+++..+.+++. +..-..++      +...+-...    ....-+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            56899999998543 3444444444 5899999999988888763 21000000      000000000    0011222


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.-...|+||.-...|.  .+...|++++.++     .++||.+++ +.
T Consensus       261 e~l~~aDIVI~tv~iPg--~~ap~Lvt~emv~-----~MkpGsVIV-Dv  301 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG--RPAPRLVTAAAAT-----GMQPGSVVV-DL  301 (381)
T ss_dssp             HHHTTCSEEEECCCCTT--SCCCCCBCHHHHH-----TSCTTCEEE-ET
T ss_pred             HHHhcCCEEEECCCCCC--cccceeecHHHHh-----cCCCCcEEE-EE
Confidence            22367999997765443  2234688876544     477877765 44

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.70  E-value=0.39  Score=45.24  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ...++||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ +.+-  ...|..+.+++ ..+.+|+
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--vi-~~~~--~~~~~~~~~~~~~~~g~D~  265 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD--FV-NPND--HSEPISQVLSKMTNGGVDF  265 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE--EE-CGGG--CSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCce--EE-eccc--cchhHHHHHHHHhCCCCCE
Confidence            3468999999764 666777777766558999999999999988742110  00 0000  00233344433 2347999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      ||--..     .       .+.++. +.+.|+++ |.++.-.
T Consensus       266 vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          266 SLECVG-----N-------VGVMRN-ALESCLKGWGVSVLVG  294 (374)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             EEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEEc
Confidence            984432     1       133455 56899999 9987643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.67  E-value=0.43  Score=44.51  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhh-c----C
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELES-R----K  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~-~----~  173 (337)
                      ...++||++|+|+ |..+..+++..+. +|++++.+++-.+.++++-...       -+... ..|..+-+.+ .    .
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~-------~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV-------TLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE-------EEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCE-------EEcCcccccHHHHHHHHhccccC
Confidence            4568999999865 6667777777654 5999999999999988742110       00000 0232333332 2    3


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.+|+||-...     .       ...++. +.+.|+++|.++.-.
T Consensus       239 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          239 DLPNVTIDCSG-----N-------EKCITI-GINITRTGGTLMLVG  271 (352)
T ss_dssp             SCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECS
T ss_pred             CCCCEEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            56999985432     1       123444 567899999987643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.67  E-value=0.11  Score=44.28  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      .+.++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. +.      +..+.....|..+.+.+ . .+.+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV------EYVGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC------SEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEeeCCcHHHHHHHHHHhCCCCC
Confidence            45688999994  45666666666544 5899999999888877653 11      00011111233333332 2 2469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||...      ++       +.++. +.+.|+++|.++.-
T Consensus       109 D~vi~~~------g~-------~~~~~-~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          109 DVVLNSL------AG-------EAIQR-GVQILAPGGRFIEL  136 (198)
T ss_dssp             EEEEECC------CT-------HHHHH-HHHTEEEEEEEEEC
T ss_pred             eEEEECC------ch-------HHHHH-HHHHhccCCEEEEE
Confidence            9999543      21       23455 56789999988754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.64  E-value=0.35  Score=45.94  Aligned_cols=108  Identities=12%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc-HHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D-~~~~l~~-~-~~~y  176 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-. .       -+.....| ..+.+++ + ...+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa-~-------~i~~~~~~~~~~~v~~~t~g~g~  255 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-E-------IADLSLDTPLHEQIAALLGEPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-E-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC-c-------EEccCCcchHHHHHHHHhCCCCC
Confidence            4568999999765 6777888887766689999999999999987521 0       00000112 3334433 2 2469


Q ss_pred             eEEEEeCCCCCCCCC----CcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGP----CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p----~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||--...+.. +.    ..+.-..+.++. +.+.|+++|.+++-
T Consensus       256 Dvvid~~G~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~  299 (398)
T 1kol_A          256 DCAVDAVGFEAR-GHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEEECCCTTCB-CSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEEC
T ss_pred             CEEEECCCCccc-ccccccccccchHHHHHH-HHHHHhcCCEEEEe
Confidence            999854432210 00    000111234555 56789999998754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.63  E-value=0.062  Score=50.29  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             CCCeEEE-EccHHHHHhhc-CCceeEEEEeCCCCCCCCC---CcCC--chHHHHHHHhccccCCCceEEEeCC
Q 019699          155 DPRLELV-INDARAELESR-KESYDVIIGDLADPIEGGP---CYKL--YTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       155 d~rv~v~-~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p---~~~L--~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +...+++ .+|++++|+.. .+++|+|++|++-....+-   ....  +..+.+.. +++.|+|+|+++++.+
T Consensus        36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~-~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGG  107 (319)
T ss_dssp             CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEEC
T ss_pred             cccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHH-HHHHcCCCeEEEEEcC
Confidence            4557888 99999999864 3689999999974321000   0011  23466676 6899999999998865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.55  E-value=0.29  Score=46.76  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .++..     ..|..+.+.+.  ...+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--vi~~~-----~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH--VIDPT-----KENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE--EECTT-----TSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE--EEcCC-----CCCHHHHHHHHhCCCCCC
Confidence            3567999999864 666777888776669999999999999998763210  01000     12444444442  24699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhcccc----CCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL----NPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L----~p~Gvlv~~~  219 (337)
                      +||--..     ++      ...+.. +.+.|    +++|.++.-.
T Consensus       285 ~vid~~g-----~~------~~~~~~-~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          285 LFLEATG-----VP------QLVWPQ-IEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             EEEECSS-----CH------HHHHHH-HHHHHHHCSCCCCEEEECS
T ss_pred             EEEECCC-----Cc------HHHHHH-HHHHHHhccCCCcEEEEeC
Confidence            9984432     11      012333 33444    9999988654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.40  E-value=0.11  Score=49.68  Aligned_cols=109  Identities=14%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH-HHHHhh-cC-Cce
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-RK-ESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~-~~~l~~-~~-~~y  176 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-. .       -+.....|. .+.+++ .. ..+
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~-------~i~~~~~~~~~~~~~~~~~g~g~  255 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF-E-------TIDLRNSAPLRDQIDQILGKPEV  255 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC-E-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-c-------EEcCCCcchHHHHHHHHhCCCCC
Confidence            4568999999876 7778888887665589999999999999887421 0       011111232 333433 22 369


Q ss_pred             eEEEEeCCCCCCC-CC-CcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEG-GP-CYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~-~p-~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||--...+... ++ ..++-....++. +.+.|+++|.+++-
T Consensus       256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gG~iv~~  298 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEANTETPNGALNS-LFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTTSBCTTHHHHH-HHHHEEEEEEEECC
T ss_pred             CEEEECCCCccccccccccccccHHHHHH-HHHHHhcCCEEEEe
Confidence            9998544321100 00 000001123455 56789999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.39  E-value=0.54  Score=44.74  Aligned_cols=97  Identities=20%  Similarity=0.345  Sum_probs=58.2

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhhcCCcee
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~~~~~yD  177 (337)
                      .+++|+++|+|. |..+...++..+ .+|+++|.+++-.+.+++.++.        .+.+..   .|..+.+    ...|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G-a~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l----~~aD  233 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG-ATVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAV----KRAD  233 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHH----HHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHH----cCCC
Confidence            468999999864 233334444455 4899999999988877765432        122221   1222333    3589


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||.-...|..  ....+.+.+.     -+.++++|+++ +.
T Consensus       234 vVi~~~~~p~~--~t~~li~~~~-----l~~mk~g~~iV-~v  267 (377)
T 2vhw_A          234 LVIGAVLVPGA--KAPKLVSNSL-----VAHMKPGAVLV-DI  267 (377)
T ss_dssp             EEEECCCCTTS--CCCCCBCHHH-----HTTSCTTCEEE-EG
T ss_pred             EEEECCCcCCC--CCcceecHHH-----HhcCCCCcEEE-EE
Confidence            99986654431  1235655543     34578988875 54

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.34  E-value=0.42  Score=44.98  Aligned_cols=96  Identities=9%  Similarity=-0.021  Sum_probs=62.3

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-----ccHHHHHhh-cC
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-----~D~~~~l~~-~~  173 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-..          .++.     .|..+.+++ ..
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----------~vi~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT----------ECLNPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS----------EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc----------EEEecccccchHHHHHHHHhC
Confidence            4568999999764 56677777776655899999999989998874211          1111     234444443 23


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      +.+|+||--..     .       .+.++. +.+.|+++ |.++.-.
T Consensus       260 gg~Dvvid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          260 GGVDYAVECAG-----R-------IETMMN-ALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             CCCCEEEECCC-----C-------HHHHHH-HHHHHhcCCCEEEEEc
Confidence            47999984332     1       133455 56889999 9987543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.33  E-value=0.47  Score=44.68  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=62.5

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ |.+-  ...|..+.+.+ ..+.+|+
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~--vi-~~~~--~~~~~~~~v~~~~~~g~Dv  268 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD--CL-NPRE--LDKPVQDVITELTAGGVDY  268 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE--EE-CGGG--CSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcE--EE-cccc--ccchHHHHHHHHhCCCccE
Confidence            3468999999764 666777888776558999999999999888742110  00 0000  00233444433 2347999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      ||--..     .       .+.++. +.+.|+++ |.++.-.
T Consensus       269 vid~~G-----~-------~~~~~~-~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          269 SLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             EEESSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHhhcCCCEEEEEC
Confidence            984332     1       133455 56789999 9987643

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.29  E-value=0.7  Score=45.67  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh------------
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------------  170 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~------------  170 (337)
                      .-+++++-+|.|++..-+.+. +...|.++|+|+...+.-+.+|..      +|...++.+|..++..            
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~  160 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC------DPATHHFNEDIRDITLSHQEGVSDEAAA  160 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc------CCCcceeccchhhhhhccccccchhhHH
Confidence            458999999999999888764 455688999999999988887742      3556678899888752            


Q ss_pred             ----hcCCceeEEEEeCCC-CCC-CC----------------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--
Q 019699          171 ----SRKESYDVIIGDLAD-PIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--  226 (337)
Q Consensus       171 ----~~~~~yDvIi~D~~d-p~~-~~----------------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--  226 (337)
                          .....+|+|+..++= +.. .+                +-..|+ .+|.+. + +.++|.-+++=|+.  ++..  
T Consensus       161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf-~e~~ri-I-~~~rPk~fvlENV~--gl~s~~  235 (482)
T 3me5_A          161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLF-FDVVRI-I-DARRPAMFVLENVK--NLKSHD  235 (482)
T ss_dssp             HHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHH-HHHHHH-H-HHHCCSEEEEEEET--TTTTGG
T ss_pred             hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHH-HHHHHH-H-HHcCCcEEEEeCcH--HHhccc
Confidence                123468999988862 221 11                101122 456664 3 46789877766652  2222  


Q ss_pred             ChhHHHHHHHHHhhh
Q 019699          227 HTEVFSCIYNTLRQV  241 (337)
Q Consensus       227 ~~~~~~~i~~~l~~v  241 (337)
                      ....+..+++.|.+.
T Consensus       236 ~g~~f~~i~~~L~~l  250 (482)
T 3me5_A          236 KGKTFRIIMQTLDEL  250 (482)
T ss_dssp             GGHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHhcC
Confidence            235677777777764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.28  E-value=0.43  Score=44.87  Aligned_cols=94  Identities=11%  Similarity=0.061  Sum_probs=61.3

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhh-c-CC
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-R-KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~-~-~~  174 (337)
                      ...++||++|+|. |.++..+++..+ .+|++++.+++-.+.++++-..          .++.   .|..+.+.+ . ..
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa~----------~vi~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFALGAD----------HGINRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTCS----------EEEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHcCCC----------EEEcCCcccHHHHHHHHhCCC
Confidence            4568999999775 666777777765 4899999999999998875211          1111   233444433 2 34


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+|+||-... +       .     .++. +.+.|+++|.++.-.
T Consensus       257 g~D~vid~~g-~-------~-----~~~~-~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          257 GADHILEIAG-G-------A-----GLGQ-SLKAVAPDGRISVIG  287 (363)
T ss_dssp             CEEEEEEETT-S-------S-----CHHH-HHHHEEEEEEEEEEC
T ss_pred             CceEEEECCC-h-------H-----HHHH-HHHHhhcCCEEEEEe
Confidence            7999985542 1       1     1233 457899999988654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.27  E-value=0.51  Score=44.41  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-----ccHHHHHhh-cC
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-----~D~~~~l~~-~~  173 (337)
                      ...++||++|+|. |..+..+++..+..+|++++.+++-.+.++++-..          .++.     .|..+.+++ ..
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~----------~vi~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----------ECVNPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----------EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc----------eEecccccchhHHHHHHHHhC
Confidence            4568999999765 66677777776655899999999999988864211          1111     233444443 23


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEe
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ  218 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~  218 (337)
                      +.+|+||--..     .       .+.++. +.+.|+++ |.++.-
T Consensus       260 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          260 GGVDFSFEVIG-----R-------LDTMVT-ALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SCBSEEEECSC-----C-------HHHHHH-HHHHBCTTTCEEEEC
T ss_pred             CCCcEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEe
Confidence            47999984432     1       133454 56789999 988764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.23  E-value=0.17  Score=47.27  Aligned_cols=90  Identities=18%  Similarity=0.102  Sum_probs=60.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ....+||++|+|. |.++..+++..+ .+|++++.+++-.+.++++ +.       .  .++ .|. +.+.   +.+|+|
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga-------~--~v~-~~~-~~~~---~~~D~v  238 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM-GV-------K--HFY-TDP-KQCK---EELDFI  238 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT-TC-------S--EEE-SSG-GGCC---SCEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc-CC-------C--eec-CCH-HHHh---cCCCEE
Confidence            4578999999875 677788888765 4899999999999988874 21       1  122 332 2222   279999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |--...+       .     .++. +.+.|+++|.++.-.
T Consensus       239 id~~g~~-------~-----~~~~-~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPTH-------Y-----DLKD-YLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCSC-------C-----CHHH-HHTTEEEEEEEEECC
T ss_pred             EECCCcH-------H-----HHHH-HHHHHhcCCEEEEEC
Confidence            8443221       1     1233 467899999988653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.15  E-value=0.29  Score=45.70  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDv  178 (337)
                      ..++||++|+|. |..+..+++..+..+|++++.+++-.+.++++-...  .+ +.+    ..|..+.+.+.  ...+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~--~~-~~~----~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY--VI-NPF----EEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE--EE-CTT----TSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE--EE-CCC----CcCHHHHHHHHcCCCCCCE
Confidence            568999999864 666777777765448999999999888888642110  00 011    12444444432  246999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||....     .       .+.++. +.+.|+++|.++.-.
T Consensus       240 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          240 FLEFSG-----A-------PKALEQ-GLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEc
Confidence            985442     1       133455 567899999887543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.14  E-value=0.47  Score=44.60  Aligned_cols=101  Identities=11%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-...  .+ +.+-  ...|..+.+++ ..+.+|+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--vi-~~~~--~~~~~~~~v~~~~~~g~D~  263 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE--CI-NPQD--FSKPIQEVLIEMTDGGVDY  263 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE--EE-CGGG--CSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce--Ee-cccc--ccccHHHHHHHHhCCCCCE
Confidence            3468999999764 566777777665558999999999999988742110  00 0000  00234444443 2347999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      ||--..     .       .+.++. +.+.|+++ |.++.-.
T Consensus       264 vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          264 SFECIG-----N-------VKVMRA-ALEACHKGWGVSVVVG  292 (373)
T ss_dssp             EEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred             EEECCC-----c-------HHHHHH-HHHhhccCCcEEEEEe
Confidence            984432     1       133455 56889999 9987643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.05  E-value=0.43  Score=44.24  Aligned_cols=99  Identities=16%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD  177 (337)
                      ...++||++|+|+ |.++..+++..+...+++++.+++=.+.++++-...       -+.....|..+.++.  ....+|
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~-------~i~~~~~~~~~~~~~~~~~~g~d  231 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ-------TFNSSEMSAPQMQSVLRELRFNQ  231 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHGGGCSSE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeE-------EEeCCCCCHHHHHHhhcccCCcc
Confidence            4578999999875 445667777777778899999999999998863211       011111233344333  235578


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+-....            .+.++. +.+.|+++|.+++-.
T Consensus       232 ~v~d~~G~------------~~~~~~-~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          232 LILETAGV------------PQTVEL-AVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEECSCS------------HHHHHH-HHHHCCTTCEEEECC
T ss_pred             cccccccc------------cchhhh-hhheecCCeEEEEEe
Confidence            77644321            134455 567899999988754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.83  E-value=0.53  Score=44.54  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE------ccHHHHHhh-c
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R  172 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~------~D~~~~l~~-~  172 (337)
                      ...++||++|+| -|..+..+++..+..+|++++.+++-.+.++++- ..         .++.      .|..+.+++ .
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG-a~---------~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG-AD---------LTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT-CS---------EEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcC-Cc---------EEEeccccCcchHHHHHHHHh
Confidence            346899999965 3566777777765469999999999999988642 10         1221      233333433 2


Q ss_pred             C-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          173 K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 ~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      . ..+|+||-....     +       +.++. +.+.|+++|.++.-.
T Consensus       264 ~g~g~Dvvid~~g~-----~-------~~~~~-~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATGD-----S-------RALLE-GSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence            2 369999854321     1       12344 467899999987643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.76  E-value=0.4  Score=44.99  Aligned_cols=94  Identities=15%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH-HHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~-~~l~~~~~~yDv  178 (337)
                      ...++||++|+|. |..+..+++..+ .+|++++.+++-.+.++++ +..         .++..+-. ++.+...+.+|+
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~v~~~~~~~~~~~~~~~~~D~  246 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKM-GAD---------HYIATLEEGDWGEKYFDTFDL  246 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TCS---------EEEEGGGTSCHHHHSCSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCC---------EEEcCcCchHHHHHhhcCCCE
Confidence            4568999999753 666777777655 4799999999888888874 211         11211111 223222257999


Q ss_pred             EEEeCCC--CCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLAD--PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~d--p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||--...  +.       .     ++. +.+.|+++|.++.-
T Consensus       247 vid~~g~~~~~-------~-----~~~-~~~~l~~~G~iv~~  275 (360)
T 1piw_A          247 IVVCASSLTDI-------D-----FNI-MPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEECCSCSTTC-------C-----TTT-GGGGEEEEEEEEEC
T ss_pred             EEECCCCCcHH-------H-----HHH-HHHHhcCCCEEEEe
Confidence            9855432  11       1     122 45789999998754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.49  E-value=0.4  Score=44.52  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...++||++|+|+ |..+..+++..+ .+|++++.+++-.+.+++. .... .+ |.+    ..|..+.+.+..+.+|+|
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~~-~~-d~~----~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKEL-GADL-VV-NPL----KEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TCSE-EE-CTT----TSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHC-CCCE-Ee-cCC----CccHHHHHHHHhCCCCEE
Confidence            4568999999863 666777777765 5899999999999988864 2110 00 000    123333333211579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |....     .+       +.++. +.+.|+++|.++.-.
T Consensus       235 id~~g-----~~-------~~~~~-~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          235 VVTAV-----SK-------PAFQS-AYNSIRRGGACVLVG  261 (339)
T ss_dssp             EESSC-----CH-------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EECCC-----CH-------HHHHH-HHHHhhcCCEEEEec
Confidence            85442     11       23444 467899999887543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.47  E-value=0.23  Score=46.06  Aligned_cols=97  Identities=24%  Similarity=0.232  Sum_probs=61.5

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ...++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+.+-+...      .-+.....|..+.+.+ ..+.+|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKCRFLVEELGFD------GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCCS------EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCC------EEEECCCHHHHHHHHHhcCCCce
Confidence            45689999997  55677777777765 48999999999888883333211      0001111344444433 345799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||....      .       +.++. +.+.|+++|.++.-
T Consensus       221 ~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVG------G-------EILDT-VLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSC------H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred             EEEECCC------c-------chHHH-HHHHHhhCCEEEEE
Confidence            9885432      1       23455 56899999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.30  E-value=0.46  Score=45.75  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~  145 (337)
                      .+++|+++|+|.-+ .+..+++..+ .+|+++|.++...+.+++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~l  214 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM  214 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc
Confidence            47899999998544 3445555555 4899999999988877653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.29  E-value=0.22  Score=46.37  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      ..++||++|+|+ |..+..+++..+..+|++++.+++-.+.++++ ...  .+ +.+    ..|..+.+++ ..+.+|+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~--v~-~~~----~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR--LV-NPL----EEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE--EE-CTT----TSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh--cc-CcC----ccCHHHHHHHhcCCCCCEE
Confidence            568999999754 66677777776544899999999888877764 211  01 111    1233333332 24579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |--..     +       .+.++. +.+.|+++|.++.-.
T Consensus       236 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          236 LEFSG-----N-------EAAIHQ-GLMALIPGGEARILG  262 (343)
T ss_dssp             EECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred             EECCC-----C-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            85432     1       133455 567899999887643

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.28  E-value=0.15  Score=42.80  Aligned_cols=112  Identities=17%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             HHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699           92 LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES  171 (337)
Q Consensus        92 l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~  171 (337)
                      |-+..-....-+.-||++|.|.|-+=-.+....+..+|.++|-.-      +.| +  .+.  -|.-.++.||+++-+..
T Consensus        30 L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~------~~h-p--~~~--P~~e~~ilGdi~~tL~~   98 (174)
T 3iht_A           30 LEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAV------ASH-P--DST--PPEAQLILGDIRETLPA   98 (174)
T ss_dssp             HHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSC------CCC-G--GGC--CCGGGEEESCHHHHHHH
T ss_pred             HHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeee------ccC-C--CCC--CchHheecccHHHHHHH
Confidence            334444445667889999999999988888888889999998621      111 1  111  13456899999998876


Q ss_pred             c----CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          172 R----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       172 ~----~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .    +.+--++=.|.-...   +....-+...+.-++..+|+|||+++-
T Consensus        99 ~~~r~g~~a~LaHaD~G~g~---~~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A           99 TLERFGATASLVHADLGGHN---REKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             HHHHHCSCEEEEEECCCCSC---HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHhcCCceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            3    455666666764322   111222333333346899999999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.17  E-value=0.46  Score=45.28  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~  144 (337)
                      .+++|+++|+|.=+ .+..+++..+. +|+++|.++.-.+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            57899999998544 34455555554 79999999988777776

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=92.16  E-value=0.36  Score=44.94  Aligned_cols=93  Identities=11%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH-HHHHhh--cCCc
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES--RKES  175 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~-~~~l~~--~~~~  175 (337)
                      ...+||++|+|. |.++..+++..  + .+|++++.+++-.+.++++ ...         .++..+- .+++++  ....
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALEL-GAD---------YVSEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHH-TCS---------EEECHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHh-CCC---------EEeccccchHHHHHhhcCCC
Confidence            568999999864 56667777765  5 5799999999989988874 211         1221111 122222  1347


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|+||--..     +       .+.++. +.+.|+++|.++.-
T Consensus       239 ~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          239 ASIAIDLVG-----T-------EETTYN-LGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEEESSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             ccEEEECCC-----C-------hHHHHH-HHHHhhcCCEEEEe
Confidence            999985432     1       123455 56789999998764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.10  E-value=0.45  Score=44.79  Aligned_cols=96  Identities=23%  Similarity=0.292  Sum_probs=61.6

Q ss_pred             CCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          102 NPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      ...+||++|  +|-|.++..++++....+|++++.+++-.+.+++. +... .+ +.+     .|..+.+.+. .+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~-vi-~~~-----~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHH-VI-DHS-----KPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSE-EE-CTT-----SCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCE-EE-eCC-----CCHHHHHHHhcCCCceE
Confidence            456899998  34577788888863357999999999989998874 2110 01 111     2334444433 457998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||-...     +       .+.++. +.+.|+++|.++.-
T Consensus       243 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH-----T-------DKHAAE-IADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC-----H-------HHHHHH-HHHHSCTTCEEEEC
T ss_pred             EEECCC-----c-------hhhHHH-HHHHhcCCCEEEEE
Confidence            874332     1       134455 56789999998864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.02  E-value=0.44  Score=44.79  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh---HHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~---~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .++||++|+|+ |..+..+++..+. +|++++.++   +-.+.++++ ...       .+.  ..|..+.+.+..+.+|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~-ga~-------~v~--~~~~~~~~~~~~~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET-KTN-------YYN--SSNGYDKLKDSVGKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH-TCE-------EEE--CTTCSHHHHHHHCCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh-CCc-------eec--hHHHHHHHHHhCCCCCE
Confidence            68999999843 4455566665554 899999998   777888764 211       010  00222233222257999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHH-HHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFY-EFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~-~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||.....     +       ..+ +. +.+.|+++|.++.-.
T Consensus       250 vid~~g~-----~-------~~~~~~-~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA-----D-------VNILGN-VIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC-----C-------THHHHH-HGGGEEEEEEEEECS
T ss_pred             EEECCCC-----h-------HHHHHH-HHHHHhcCCEEEEEe
Confidence            9865432     1       123 44 568899999887543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.91  E-value=0.58  Score=43.80  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=58.1

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...+||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.++..       .+ +-..| .+.+++..+.+|+||
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~lGa~-------~v-i~~~~-~~~~~~~~~g~D~vi  249 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGAD-------DY-VIGSD-QAKMSELADSLDYVI  249 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTTSCCS-------CE-EETTC-HHHHHHSTTTEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHcCCc-------ee-ecccc-HHHHHHhcCCCCEEE
Confidence            568999999753 455666777655 48999999998888877434321       11 11112 234444345799998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      --...+.      .      ++. +.+.|+++|.++.-.
T Consensus       250 d~~g~~~------~------~~~-~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          250 DTVPVHH------A------LEP-YLSLLKLDGKLILMG  275 (357)
T ss_dssp             ECCCSCC------C------SHH-HHTTEEEEEEEEECS
T ss_pred             ECCCChH------H------HHH-HHHHhccCCEEEEeC
Confidence            4432211      1      122 457899999987643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.85  E-value=0.78  Score=43.11  Aligned_cols=93  Identities=17%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvI  179 (337)
                      ..++||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.++..         .++. .| .+.+++..+.+|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~lGa~---------~v~~~~~-~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGAD---------SFLVSRD-QEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHTSCCS---------EEEETTC-HHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcCCc---------eEEeccC-HHHHHHhhCCCCEE
Confidence            568999999754 555667777665 58999999998887777433321         1111 12 23444434579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |-....+.       .+     +. +.+.|+++|.++.-
T Consensus       256 id~~g~~~-------~~-----~~-~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          256 IDTVSAVH-------PL-----LP-LFGLLKSHGKLILV  281 (366)
T ss_dssp             EECCSSCC-------CS-----HH-HHHHEEEEEEEEEC
T ss_pred             EECCCcHH-------HH-----HH-HHHHHhcCCEEEEE
Confidence            85543211       11     22 34678999988754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.80  E-value=2.3  Score=39.92  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .+..++|.+||+|  ++.+++.+.+. + .+|.++|.+++.++.+++. +          ++ ...|..+.++......|
T Consensus         5 ~~~~~kIgIIG~G~mG~slA~~L~~~-G-~~V~~~dr~~~~~~~a~~~-G----------~~-~~~~~~e~~~~a~~~aD   70 (341)
T 3ktd_A            5 KDISRPVCILGLGLIGGSLLRDLHAA-N-HSVFGYNRSRSGAKSAVDE-G----------FD-VSADLEATLQRAAAEDA   70 (341)
T ss_dssp             -CCSSCEEEECCSHHHHHHHHHHHHT-T-CCEEEECSCHHHHHHHHHT-T----------CC-EESCHHHHHHHHHHTTC
T ss_pred             cCCCCEEEEEeecHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHc-C----------Ce-eeCCHHHHHHhcccCCC
Confidence            4556789999998  45556666654 2 5799999999988877653 1          11 23455555543223479


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +||+-.+.       .  ...+.++. +... +|+. +++..+
T Consensus        71 lVilavP~-------~--~~~~vl~~-l~~~-~~~~-iv~Dv~  101 (341)
T 3ktd_A           71 LIVLAVPM-------T--AIDSLLDA-VHTH-APNN-GFTDVV  101 (341)
T ss_dssp             EEEECSCH-------H--HHHHHHHH-HHHH-CTTC-CEEECC
T ss_pred             EEEEeCCH-------H--HHHHHHHH-HHcc-CCCC-EEEEcC
Confidence            99998752       1  23466666 5554 6654 455654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.77  E-value=1  Score=42.51  Aligned_cols=101  Identities=19%  Similarity=0.354  Sum_probs=55.0

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+++|+++|+|. |..+...++..+ .+|+++|.+++-.+.+++.+..        .+.....+... +.+.-...|+||
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~g~--------~~~~~~~~~~~-l~~~~~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVFGG--------RVITLTATEAN-IKKSVQHADLLI  234 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SEEEEECCHHH-HHHHHHHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcCc--------eEEEecCCHHH-HHHHHhCCCEEE
Confidence            468999999853 233333444444 4899999999887776653321        23332222221 111113689998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .....+..  ....+.+.+.     -+.++++|+++ +.+
T Consensus       235 ~~~g~~~~--~~~~li~~~~-----l~~mk~gg~iV-~v~  266 (369)
T 2eez_A          235 GAVLVPGA--KAPKLVTRDM-----LSLMKEGAVIV-DVA  266 (369)
T ss_dssp             ECCC---------CCSCHHH-----HTTSCTTCEEE-ECC
T ss_pred             ECCCCCcc--ccchhHHHHH-----HHhhcCCCEEE-EEe
Confidence            87654320  1124555543     34578888765 543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.75  E-value=0.22  Score=45.81  Aligned_cols=88  Identities=14%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ....+||++|+|. |.++..+++..+. +|++++ +++-.+.++++ +..         .++ .| .+-+   .+.+|+|
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l-Ga~---------~v~-~d-~~~v---~~g~Dvv  203 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR-GVR---------HLY-RE-PSQV---TQKYFAI  203 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH-TEE---------EEE-SS-GGGC---CSCEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc-CCC---------EEE-cC-HHHh---CCCccEE
Confidence            4568999999863 6777788887654 899999 88888888874 211         122 24 2222   5789998


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |--...+.            + .. +.+.|+++|.++.-.
T Consensus       204 ~d~~g~~~------------~-~~-~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          204 FDAVNSQN------------A-AA-LVPSLKANGHIICIQ  229 (315)
T ss_dssp             ECC--------------------T-TGGGEEEEEEEEEEC
T ss_pred             EECCCchh------------H-HH-HHHHhcCCCEEEEEe
Confidence            84332111            1 22 457899999887653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=91.59  E-value=5.7  Score=42.71  Aligned_cols=152  Identities=10%  Similarity=0.075  Sum_probs=93.6

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh----------
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~----------  171 (337)
                      +-++++|-+|.|++..-+.+. +. ..+.++|+|+..++.-+.+|+         ...++.+|..++++.          
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP---------GSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC---------CCccccccHHHHhhhccchhhhhhh
Confidence            458999999999998877664 33 467899999999998887764         456788887765421          


Q ss_pred             -----cCCceeEEEEeCC-CCCC-CCCC---------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699          172 -----RKESYDVIIGDLA-DPIE-GGPC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (337)
Q Consensus       172 -----~~~~yDvIi~D~~-dp~~-~~p~---------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~  235 (337)
                           .....|+|+.-++ -+.. .+..         ..| -.+|++. + +.++|.-+++=|...-..+.....+..++
T Consensus       610 ~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L-~~~~~ri-v-~~~rPk~~llENV~glls~~~~~~~~~i~  686 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSL-VVSFLSY-C-DYYRPRFFLLENVRNFVSFKRSMVLKLTL  686 (1002)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSH-HHHHHHH-H-HHHCCSEEEEEEEGGGGTTGGGHHHHHHH
T ss_pred             hhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHH-HHHHHHH-H-HHhCCCEEEEeccHHHhccCcchHHHHHH
Confidence                 1236899998876 2221 1110         011 1356664 4 56899888776752110012245677777


Q ss_pred             HHHhhhcCceeEEEeeccccC----CceEEEEEecC
Q 019699          236 NTLRQVFKYVVPYSAHIPSFA----DTWGWIMASDS  267 (337)
Q Consensus       236 ~~l~~vF~~v~~~~~~vP~~~----~~~~~~~as~~  267 (337)
                      +.|.+.-=.+.........||    ..-.|++|++.
T Consensus       687 ~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~  722 (1002)
T 3swr_A          687 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP  722 (1002)
T ss_dssp             HHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred             HHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence            777766333443333444443    23457888763

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.47  E-value=0.28  Score=45.39  Aligned_cols=74  Identities=11%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcE--EEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~--v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~  175 (337)
                      ..+.+|+++-+|.|++...+.+. +...  |.++|+|+...+..+.+++         ...++.+|..++....   ...
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~~~~   83 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQEWGP   83 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHHTCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcccCC
Confidence            34568999999999998887765 3333  6899999999988887753         3357788887653321   146


Q ss_pred             eeEEEEeCC
Q 019699          176 YDVIIGDLA  184 (337)
Q Consensus       176 yDvIi~D~~  184 (337)
                      +|+|+..++
T Consensus        84 ~Dll~ggpP   92 (295)
T 2qrv_A           84 FDLVIGGSP   92 (295)
T ss_dssp             CSEEEECCC
T ss_pred             cCEEEecCC
Confidence            999999886

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=91.28  E-value=0.88  Score=41.92  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhh-cCCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~-~~~~y  176 (337)
                      ...++||+.|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ...      ..+.... .|..+.+.+ ..+.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~~------~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GFD------AAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CCc------EEEecCCHHHHHHHHHHHhCCCC
Confidence            45689999996  56666666666654 4899999999888888554 210      0000001 334444433 23579


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++|....      .       +.++. +.+.|+++|.++.-.
T Consensus       216 d~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          216 DCYFDNVG------G-------EFLNT-VLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEESSC------H-------HHHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEECCC------h-------HHHHH-HHHHHhcCCEEEEEe
Confidence            99986542      1       12455 568899999887643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.10  E-value=1.2  Score=41.27  Aligned_cols=95  Identities=17%  Similarity=0.070  Sum_probs=60.7

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE---EccHHHHHhh-cCC
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV---INDARAELES-RKE  174 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~---~~D~~~~l~~-~~~  174 (337)
                      ...++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..      +  ..+-   ..|..+.+.+ ..+
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~~-g~------~--~~~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSI-GG------E--VFIDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHHT-TC------C--EEEETTTCSCHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHHc-CC------c--eEEecCccHhHHHHHHHHhCC
Confidence            45689999998  45666667777655 5899999998888888763 11      0  1111   1233444433 123


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+|+||....     .       .+.++. +.+.|+++|.++.-
T Consensus       238 ~~D~vi~~~g-----~-------~~~~~~-~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          238 GAHGVINVSV-----S-------EAAIEA-STRYVRANGTTVLV  268 (347)
T ss_dssp             CEEEEEECSS-----C-------HHHHHH-HTTSEEEEEEEEEC
T ss_pred             CCCEEEECCC-----c-------HHHHHH-HHHHHhcCCEEEEE
Confidence            7999986643     1       134565 67899999988754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=90.97  E-value=0.88  Score=41.36  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH-HHHHhhcCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~-~~~l~~~~~~yD  177 (337)
                      ...++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++. ..      +   .++..+- .++.+.. +.+|
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga------~---~~~~~~~~~~~~~~~-~~~d  191 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLAL-GA------E---EAATYAEVPERAKAW-GGLD  191 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHT-TC------S---EEEEGGGHHHHHHHT-TSEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC------C---EEEECCcchhHHHHh-cCce
Confidence            45689999996  45667777777765 4899999999888888763 21      1   1222111 2333332 5799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||. ...     +        .++. +.+.|+++|.++.-
T Consensus       192 ~vid-~g~-----~--------~~~~-~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          192 LVLE-VRG-----K--------EVEE-SLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEE-CSC-----T--------THHH-HHTTEEEEEEEEEC
T ss_pred             EEEE-CCH-----H--------HHHH-HHHhhccCCEEEEE
Confidence            9986 431     1        1234 56789999988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.84  E-value=0.59  Score=45.16  Aligned_cols=106  Identities=20%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCC-----CCC-CeEEEE---ccH-----H
Q 019699          102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-----SDP-RLELVI---NDA-----R  166 (337)
Q Consensus       102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-----~d~-rv~v~~---~D~-----~  166 (337)
                      .+.+|++||+|.-+ .+..+++..+ .+|+++|.++...+.++++ ...-...     ++. ....+.   .+.     .
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG-AVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhhhhH
Confidence            46899999998543 3445555554 5899999999998888774 2110000     000 000000   000     0


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      .-+.+.-...|+||.-...|.  .+...|++++.     -+.++||.+++
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg--~~ap~Lvt~em-----v~~Mk~GsVIV  309 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPG--RPAPRLVTREM-----LDSMKPGSVVV  309 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSS--SCCCCCBCHHH-----HTTSCTTCEEE
T ss_pred             hHHHHHhcCCCEEEECCcCCC--CCCCEEecHHH-----HhcCCCCCEEE
Confidence            112222246899998765554  23347888764     34578888776

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.83  E-value=0.54  Score=43.44  Aligned_cols=97  Identities=15%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ...++||++|  +|-|..+..+++..+ .+|++++.+++-.+.++++-...       -+.....|..+.+.+.  ...+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga~~-------~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEYGAEY-------LINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCcE-------EEeCCCchHHHHHHHHhCCCCc
Confidence            4568999999  356677777888765 58999999999888888742110       0000113444444432  3569


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|+-....             +.++. +.+.|+++|.++.-.
T Consensus       219 D~vid~~g~-------------~~~~~-~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          219 DASFDSVGK-------------DTFEI-SLAALKRKGVFVSFG  247 (334)
T ss_dssp             EEEEECCGG-------------GGHHH-HHHHEEEEEEEEECC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhccCCEEEEEc
Confidence            999854321             12344 457899999988643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.82  E-value=0.8  Score=37.32  Aligned_cols=74  Identities=26%  Similarity=0.270  Sum_probs=43.7

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCce
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~y  176 (337)
                      ....+|+++|+|. |......++..+ .+|+++|.+++-++.+++          .....++.+|..  +.+... -..+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~----------~~g~~~~~~d~~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNS----------EFSGFTVVGDAAEFETLKECGMEKA   85 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCT----------TCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHh----------cCCCcEEEecCCCHHHHHHcCcccC
Confidence            4567999999875 322223333333 589999999876543321          123445556642  334432 3569


Q ss_pred             eEEEEeCCC
Q 019699          177 DVIIGDLAD  185 (337)
Q Consensus       177 DvIi~D~~d  185 (337)
                      |+||.-..+
T Consensus        86 d~Vi~~~~~   94 (155)
T 2g1u_A           86 DMVFAFTND   94 (155)
T ss_dssp             SEEEECSSC
T ss_pred             CEEEEEeCC
Confidence            999987653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.59  E-value=0.63  Score=41.62  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~  136 (337)
                      .++||+||+|+ |.. +..+++ .++.+++.||-|.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence            47999999974 322 333444 4678999999996

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.55  E-value=0.72  Score=42.91  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=59.1

Q ss_pred             CCCCeEEEEecc--hhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cC-Cc
Q 019699          101 PNPKTIFIMGGG--EGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G--~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~-~~  175 (337)
                      ...++||++|+|  .|..+..+++.. + .+|++++.+++-.+.+++. ...      .-+.....|..+.+.+ .. +.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA-GAD------YVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh-CCC------EEecCCCccHHHHHHHHhcCCC
Confidence            456899999987  445556666654 4 5899999999988888764 210      0000001233233333 22 47


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|+||.....            .+.++. +.+.|+++|.++.-
T Consensus       241 ~d~vi~~~g~------------~~~~~~-~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          241 VDAVIDLNNS------------EKTLSV-YPKALAKQGKYVMV  270 (347)
T ss_dssp             EEEEEESCCC------------HHHHTT-GGGGEEEEEEEEEC
T ss_pred             ceEEEECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence            9999865421            123444 56899999988764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=90.55  E-value=0.43  Score=44.46  Aligned_cols=95  Identities=20%  Similarity=0.277  Sum_probs=61.1

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ...++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+++.-..       .-+... .|..+.+.+.  ...+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga~-------~v~~~~-~~~~~~v~~~~~~~g~  228 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSVGAD-------IVLPLE-EGWAKAVREATGGAGV  228 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTCS-------EEEESS-TTHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCCc-------EEecCc-hhHHHHHHHHhCCCCc
Confidence            45689999996  56777788888765 4899999999888888874211       001111 3444444432  2469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||-....     +        .++. +.+.|+++|.++.-
T Consensus       229 Dvvid~~g~-----~--------~~~~-~~~~l~~~G~iv~~  256 (342)
T 4eye_A          229 DMVVDPIGG-----P--------AFDD-AVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEEESCC---------------CHHH-HHHTEEEEEEEEEC
T ss_pred             eEEEECCch-----h--------HHHH-HHHhhcCCCEEEEE
Confidence            999855431     1        1234 45789999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.41  E-value=3.3  Score=40.37  Aligned_cols=142  Identities=15%  Similarity=0.153  Sum_probs=79.3

Q ss_pred             CCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCCC--------CCCCeEEEEccHHHHH
Q 019699          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAEL  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~--------~d~rv~v~~~D~~~~l  169 (337)
                      ...-++-+||+|.=++  +..+++.  .-+|+++|+|++.++..++.- +.....+        ...++++ ..|..+-+
T Consensus         6 ~~~~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~   82 (446)
T 4a7p_A            6 HGSVRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV   82 (446)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH
T ss_pred             CCceEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH
Confidence            3446899999995333  4445553  358999999999888776521 1000000        0123433 34554444


Q ss_pred             hhcCCceeEEEEeCCCCCC--CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          170 ESRKESYDVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~--~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                          ..-|+||+-.+.|..  .+-+.--+-++..+. +...|+++-+++..++.+     +...+.+.+.+.+..+....
T Consensus        83 ----~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~-i~~~l~~g~iVV~~STv~-----pgtt~~l~~~l~e~~~~~d~  152 (446)
T 4a7p_A           83 ----KDADAVFIAVGTPSRRGDGHADLSYVFAAARE-IAENLTKPSVIVTKSTVP-----VGTGDEVERIIAEVAPNSGA  152 (446)
T ss_dssp             ----TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHH-HHHSCCSCCEEEECSCCC-----TTHHHHHHHHHHHHSTTSCC
T ss_pred             ----hcCCEEEEEcCCCCccccCCccHHHHHHHHHH-HHHhcCCCCEEEEeCCCC-----chHHHHHHHHHHHhCCCCCc
Confidence                347999998876641  121111133455666 677898887777655322     23344555666665544333


Q ss_pred             EEeecccc
Q 019699          248 YSAHIPSF  255 (337)
Q Consensus       248 ~~~~vP~~  255 (337)
                      ....-|.+
T Consensus       153 ~v~~~Pe~  160 (446)
T 4a7p_A          153 KVVSNPEF  160 (446)
T ss_dssp             EEEECCCC
T ss_pred             eEEeCccc
Confidence            34556776

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.27  E-value=0.74  Score=44.50  Aligned_cols=70  Identities=27%  Similarity=0.403  Sum_probs=49.6

Q ss_pred             CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCcee
Q 019699          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~yD  177 (337)
                      ..+|+++|+|- |.. ++.|.+.  ...|++||.|++.++.+++.           .+.++.+|+.  +.|+.. -++.|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~A~   70 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE   70 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTTCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCccC
Confidence            45799999985 333 4444443  35799999999999988753           3557888885  356554 36799


Q ss_pred             EEEEeCCC
Q 019699          178 VIIGDLAD  185 (337)
Q Consensus       178 vIi~D~~d  185 (337)
                      +||+-..+
T Consensus        71 ~viv~~~~   78 (413)
T 3l9w_A           71 VLINAIDD   78 (413)
T ss_dssp             EEEECCSS
T ss_pred             EEEECCCC
Confidence            99988764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.05  E-value=0.34  Score=44.70  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ...++||++|  +|-|..+..+++..+ .+|++++.+++-.+.++++-...       -+.....|..+.+.+.  .+.+
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~Ga~~-------~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKALGAWE-------TIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCCE-------EEeCCCccHHHHHHHHhCCCCc
Confidence            4568999999  456777777777765 48999999999999888742110       0011113344444432  2479


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||-....             +.++. +.+.|+++|.++.-.
T Consensus       211 Dvvid~~g~-------------~~~~~-~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          211 PVVYDGVGQ-------------DTWLT-SLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEEESSCG-------------GGHHH-HHTTEEEEEEEEECC
T ss_pred             eEEEECCCh-------------HHHHH-HHHHhcCCCEEEEEe
Confidence            998854321             12344 467999999988654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.92  E-value=0.46  Score=43.85  Aligned_cols=52  Identities=21%  Similarity=0.301  Sum_probs=25.2

Q ss_pred             hhhHHHHHHhHHHhc-----CCCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699           85 EFIYHESLVHPALLH-----HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus        85 e~~Y~e~l~~~~l~~-----~~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...|.+.|...-+-.     .-...+||+||+|+ |+.....+...++.+++.||-|.
T Consensus        13 ~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           13 GLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             -------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            456766655322211     11347999999985 43333333345789999999886

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=89.88  E-value=0.93  Score=42.14  Aligned_cols=96  Identities=20%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             CCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ..++||++|+  |.|.++..+++..+ .+|++++.+++-.+.+++. +... .+ +.+     .|..+.+++ ..+.+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~~-vi-~~~-----~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASRNETIEWTKKM-GADI-VL-NHK-----ESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCSHHHHHHHHHH-TCSE-EE-CTT-----SCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCcE-EE-ECC-----ccHHHHHHHhCCCCccE
Confidence            5689999953  45667777788765 4899999999999999884 2110 01 111     233333433 3457998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||-...     +       ...++. +.++|+++|.++.-.
T Consensus       221 v~d~~g-----~-------~~~~~~-~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          221 VFCTFN-----T-------DMYYDD-MIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEESSC-----H-------HHHHHH-HHHHEEEEEEEEESS
T ss_pred             EEECCC-----c-------hHHHHH-HHHHhccCCEEEEEC
Confidence            885331     1       234555 568899999987644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=89.80  E-value=0.45  Score=44.42  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCC--CeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCc
Q 019699          101 PNP--KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES  175 (337)
Q Consensus       101 ~~p--~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~  175 (337)
                      ...  ++||+.|+  |-|..+..+++..+..+|++++.+++-.+.+++.++...      -+.....|..+.+.+ ..+.
T Consensus       157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~------~~d~~~~~~~~~~~~~~~~~  230 (357)
T 2zb4_A          157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDA------AINYKKDNVAEQLRESCPAG  230 (357)
T ss_dssp             CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSE------EEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCce------EEecCchHHHHHHHHhcCCC
Confidence            345  89999996  456666667776654489999999988887776332110      000001233334433 2337


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++|...      +.       +.++. +.+.|+++|.++.-
T Consensus       231 ~d~vi~~~------G~-------~~~~~-~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          231 VDVYFDNV------GG-------NISDT-VISQMNENSHIILC  259 (357)
T ss_dssp             EEEEEESC------CH-------HHHHH-HHHTEEEEEEEEEC
T ss_pred             CCEEEECC------CH-------HHHHH-HHHHhccCcEEEEE
Confidence            99998554      21       23455 56789999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=89.63  E-value=6.7  Score=38.37  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             CeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCCC-------CCCCeEEEEccHHHHHhhcC
Q 019699          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK  173 (337)
Q Consensus       104 ~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~-------~d~rv~v~~~D~~~~l~~~~  173 (337)
                      .+|.+||+|.=  .++..+++.....+|+++|+|++.++..++-. +.....+       ...++++ ..|..+-++   
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~~~---   85 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPKAIA---   85 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHhh---
Confidence            58999999943  44566666532468999999999888766421 1100000       0113332 334333343   


Q ss_pred             CceeEEEEeCCCCCCC-C----CCcCC-chHHHHHHHhccccCCCceEEEeC
Q 019699          174 ESYDVIIGDLADPIEG-G----PCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~-~----p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                       ..|+||+-.+.|... +    -...+ +..+..+. +.+.|+++-+++.-+
T Consensus        86 -~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           86 -EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRT-IAQYAGGPKIVVEKS  135 (481)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred             -cCCEEEEecCCccccccccccCCCcHHHHHHHHHH-HHHhCCCCCEEEECC
Confidence             479999998765410 0    00122 24556676 677888877766544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=89.61  E-value=3.5  Score=40.45  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CCCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCCC--------CCCCeEEEEccHHHHH
Q 019699          101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAEL  169 (337)
Q Consensus       101 ~~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~--------~d~rv~v~~~D~~~~l  169 (337)
                      ....+|.+||+|.=  .++..+++.  ..+|+++|+|++.++..++.- +.....+        ...++++ ..|..+-+
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~   82 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV   82 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence            34579999999943  344555553  357999999999998877642 1100000        0123433 33443334


Q ss_pred             hhcCCceeEEEEeCCCCCC-CCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          170 ESRKESYDVIIGDLADPIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~-~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +    ..|+||+-.+.|.. .+.+.--+..+.++. +...|+++-+++..++
T Consensus        83 ~----~aDvviiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           83 A----HGDVQFIAVGTPPDEDGSADLQYVLAAARN-IGRYMTGFKVIVDKST  129 (478)
T ss_dssp             H----HCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECSC
T ss_pred             h----cCCEEEEEeCCCcccCCCccHHHHHHHHHH-HHHhcCCCCEEEEeCC
Confidence            3    47999999876532 121122344567776 6778988777655443

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=89.52  E-value=1.1  Score=41.90  Aligned_cols=97  Identities=16%  Similarity=0.283  Sum_probs=62.0

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ...++||++|  +|.|..+..+++..+ .+|++++.+++-.+.++++ +... .+ +.    ...|..+.+++ ..+.+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga~~-~~-~~----~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSL-GCDR-PI-NY----KTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCSE-EE-ET----TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHc-CCcE-EE-ec----CChhHHHHHHHhcCCCCC
Confidence            4568999999  567778888888765 4899999999888888873 2110 00 00    01233344433 235799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||-...      .       +.++. +.+.|+++|.++.-.
T Consensus       234 ~vid~~g------~-------~~~~~-~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          234 VVYESVG------G-------AMFDL-AVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEECSC------T-------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEECCC------H-------HHHHH-HHHHHhcCCEEEEEe
Confidence            9985432      1       23444 567899999887643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.51  E-value=6.3  Score=36.30  Aligned_cols=109  Identities=14%  Similarity=0.260  Sum_probs=57.2

Q ss_pred             CCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+.+|.+||+|.-+.+  ..++...-..++..+|++++.++. +...-...  .+...++++..+| .+-+    ..-|+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~--~~~~~~~~v~~~~-~~a~----~~aDv   77 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT--PYSPTTVRVKAGE-YSDC----HDADL   77 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG--GGSSSCCEEEECC-GGGG----TTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh--hhcCCCeEEEeCC-HHHh----CCCCE
Confidence            3569999999765443  333333334689999999875553 22211111  1112355666544 2222    45899


Q ss_pred             EEEeCCCCCCCCCCc-C--CchHHHHHHH---hccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCY-K--LYTKSFYEFV---VKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~-~--L~t~ef~~~~---~~~~L~p~Gvlv~~  218 (337)
                      ||+-...|...+... .  ..+...++.+   +.+ .+|++++++-
T Consensus        78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~-~~p~a~viv~  122 (317)
T 3d0o_A           78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMA-SKFDGIFLVA  122 (317)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH-TTCCSEEEEC
T ss_pred             EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEe
Confidence            999886554211100 0  1122333331   222 3899988763

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=89.50  E-value=1.8  Score=34.36  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             CCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCcee
Q 019699          103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~yD  177 (337)
                      .++|+++|+|. |. +++.+.+.  ..+|+++|.|++.++.+++.           .++++.+|+.  +.++.. -...|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~~d   72 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEGVS   72 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCcccCC
Confidence            36899999974 22 33444443  35799999999988776542           3566777764  345443 35799


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +||+-..
T Consensus        73 ~vi~~~~   79 (141)
T 3llv_A           73 AVLITGS   79 (141)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            9988765

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=89.47  E-value=1.7  Score=40.14  Aligned_cols=95  Identities=15%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhh-cCC
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-RKE  174 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~-~~~  174 (337)
                      ...++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++.++..        ..+-.   .|..+.++. ..+
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~g~~--------~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKFGFD--------DAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTSCCS--------EEEETTSCSCSHHHHHHHCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCc--------eEEecCCHHHHHHHHHHHhCC
Confidence            45689999996  56677777777665 58999999999888887433211        01110   133344433 235


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+|+||....      .       +.++. +.+.|+++|.++.-
T Consensus       225 ~~d~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVG------G-------KMLDA-VLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSC------H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred             CCcEEEECCC------H-------HHHHH-HHHHHhcCCEEEEE
Confidence            6999985542      1       23455 56889999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=89.37  E-value=0.39  Score=44.60  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      ...++||++|+|  .|..+..+++..+ .+|++++.+++-.+.+++.-...       -+.....|..+.+.+ . ...+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lga~~-------~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGAAY-------VIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhCCCcE-------EEeCCcccHHHHHHHHhCCCCC
Confidence            456899999986  5677777777665 48999999999888888742110       000011244444433 2 3479


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||-...     ++       .+.+. + +.|+++|.++.-.
T Consensus       215 Dvvid~~g-----~~-------~~~~~-~-~~l~~~G~iv~~G  243 (340)
T 3gms_A          215 DAAIDSIG-----GP-------DGNEL-A-FSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEESSC-----HH-------HHHHH-H-HTEEEEEEEEECC
T ss_pred             cEEEECCC-----Ch-------hHHHH-H-HHhcCCCEEEEEe
Confidence            99985432     11       22333 3 6899999988653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.06  E-value=4  Score=39.84  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC-Cce
Q 019699          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~-~~y  176 (337)
                      ...++|+++|||.-+. +...+..  ..+|..+|.|++-.+...+.+         |+..+++|||.+  .|.+.. +..
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L~~--~~~v~iIE~d~~r~~~la~~l---------~~~~Vi~GD~td~~~L~ee~i~~~  301 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRLEQ--TYSVKLIERNLQRAEKLSEEL---------ENTIVFCGDAADQELLTEENIDQV  301 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHC---------TTSEEEESCTTCHHHHHHTTGGGC
T ss_pred             ccccEEEEEcchHHHHHHHHHhhh--cCceEEEecCHHHHHHHHHHC---------CCceEEeccccchhhHhhcCchhh
Confidence            4568999999985432 3333332  368999999998877655543         467899999964  566544 789


Q ss_pred             eEEEEeCCC
Q 019699          177 DVIIGDLAD  185 (337)
Q Consensus       177 DvIi~D~~d  185 (337)
                      |+++.-..+
T Consensus       302 D~~ia~T~~  310 (461)
T 4g65_A          302 DVFIALTNE  310 (461)
T ss_dssp             SEEEECCSC
T ss_pred             cEEEEcccC
Confidence            999977654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=89.03  E-value=0.7  Score=44.50  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=40.5

Q ss_pred             CCCCeEEEEecchhHHHHHHH-hcCC-CcEEEEEECChHHHHHHHhhhhh
Q 019699          101 PNPKTIFIMGGGEGSTAREIL-RHKT-VEKVVMCDIDEEVVEFCKSYLVV  148 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll-~~~~-~~~v~~VEid~~vi~~a~~~f~~  148 (337)
                      .+...|++||++.|..+..++ +..+ ..+|.++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            456789999999999998887 4443 37999999999999999998765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.92  E-value=1.8  Score=32.61  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=42.0

Q ss_pred             CCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcCCceeE
Q 019699          103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~~~yDv  178 (337)
                      .++|+++|+|.=  .+++.+++. +..+|++++.+++-.+..+.           .+++++..|..+  .+.+.-..+|+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence            368999998432  223344443 34689999999987765541           234555555432  23332357999


Q ss_pred             EEEeC
Q 019699          179 IIGDL  183 (337)
Q Consensus       179 Ii~D~  183 (337)
                      ||.-.
T Consensus        73 vi~~~   77 (118)
T 3ic5_A           73 VISAA   77 (118)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99776

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.81  E-value=2.4  Score=34.18  Aligned_cols=98  Identities=10%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             CCeEEEEecchhH--HHHHHHhcCCCcEEEEEECC-hHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCce
Q 019699          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID-EEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY  176 (337)
Q Consensus       103 p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid-~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~y  176 (337)
                      .++|+++|+|.=+  +++.+.+.  ..+|+++|.| ++-.+..++.+        ...++++.+|+.  +.+.+. -+..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~~~~--------~~~~~~i~gd~~~~~~l~~a~i~~a   72 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRC   72 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHHHhh--------cCCCeEEEcCCCCHHHHHHcChhhC
Confidence            4689999976322  23444443  3579999998 45444333322        134788889875  345443 4679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+|++-..+..     ..    ..... ..+.+.|...+++...
T Consensus        73 d~vi~~~~~d~-----~n----~~~~~-~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           73 RAILALSDNDA-----DN----AFVVL-SAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             SEEEECSSCHH-----HH----HHHHH-HHHHHTSSSCEEEECS
T ss_pred             CEEEEecCChH-----HH----HHHHH-HHHHHCCCCEEEEEEC
Confidence            99998875321     11    12222 3456777777776653

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=88.68  E-value=0.85  Score=42.07  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      ...++||++|  +|-|..+..+++..+ .+|++++.+++-.+.++++ ...      .-+.....|..+.+.+ . ...+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-g~~------~~~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL-GCH------HTINYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCC------EEEECCCHHHHHHHHHHhCCCCC
Confidence            3568999999  466777777777665 5899999999888888763 210      0000001233333332 1 3469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||.....             +.++. +.+.|+++|.++.-.
T Consensus       216 d~vi~~~g~-------------~~~~~-~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          216 DVVYDSIGK-------------DTLQK-SLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEECSCT-------------TTHHH-HHHTEEEEEEEEECC
T ss_pred             eEEEECCcH-------------HHHHH-HHHhhccCCEEEEEe
Confidence            999865421             11344 467899999887643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=88.67  E-value=1  Score=41.81  Aligned_cols=94  Identities=17%  Similarity=0.300  Sum_probs=60.1

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCce
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~y  176 (337)
                      ...++||++|  +|-|..+..+++..+ .+|+++ .+++-.+.++++- .      +. +. ...|..+.+.+  ....+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~~~~~~~~lG-a------~~-i~-~~~~~~~~~~~~~~~~g~  217 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGSDLEYVRDLG-A------TP-ID-ASREPEDYAAEHTAGQGF  217 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHHHHHHHHHHT-S------EE-EE-TTSCHHHHHHHHHTTSCE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHHHHHHHHHcC-C------CE-ec-cCCCHHHHHHHHhcCCCc
Confidence            4568999999  356777888888765 489999 8888888887742 1      11 22 12334444433  23579


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||-..      +.       +.++. +.+.|+++|.++.-.
T Consensus       218 D~vid~~------g~-------~~~~~-~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          218 DLVYDTL------GG-------PVLDA-SFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEEESS------CT-------HHHHH-HHHHEEEEEEEEESC
T ss_pred             eEEEECC------Cc-------HHHHH-HHHHHhcCCeEEEEc
Confidence            9888433      21       23444 467899999988643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.32  E-value=3.7  Score=40.00  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-----------ccCCCCCCCeEEEEccHHHHH
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----------NKEAFSDPRLELVINDARAEL  169 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-----------~~~~~~d~rv~v~~~D~~~~l  169 (337)
                      .++|.+||+|.  ++++..+++.  ..+|+++|++++.++.+++....           .....+....++ ..|. +-+
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~~  112 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KEL  112 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HHH
Confidence            36899999995  3445555553  35899999999988877664210           000011122333 4453 222


Q ss_pred             hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                          ...|+||.-.++.       .-...+.|+. +...++++.+++.|+.+
T Consensus       113 ----~~aDlVIeaVpe~-------~~~k~~v~~~-l~~~~~~~~ii~snTs~  152 (463)
T 1zcj_A          113 ----STVDLVVEAVFED-------MNLKKKVFAE-LSALCKPGAFLCTNTSA  152 (463)
T ss_dssp             ----TTCSEEEECCCSC-------HHHHHHHHHH-HHHHSCTTCEEEECCSS
T ss_pred             ----CCCCEEEEcCCCC-------HHHHHHHHHH-HHhhCCCCeEEEeCCCC
Confidence                4589999987531       1123567777 67889998888876543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.31  E-value=0.5  Score=43.50  Aligned_cols=95  Identities=13%  Similarity=0.087  Sum_probs=58.8

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE--EccHHHHHhh-c-CC
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-R-KE  174 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~--~~D~~~~l~~-~-~~  174 (337)
                      ...++||+.|  +|.|..+..+++..+ .+|++++.+++-.+.+++. ...        ..+-  ..|..+-+.+ . ..
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GAW--------QVINYREEDLVERLKEITGGK  208 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TCS--------EEEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC--------EEEECCCccHHHHHHHHhCCC
Confidence            3568999999  455666666666554 5899999999888888773 210        0111  1233333332 2 24


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+|+||....      +       +.++. +.+.|+++|.++.-.
T Consensus       209 ~~D~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          209 KVRVVYDSVG------R-------DTWER-SLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CEEEEEECSC------G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred             CceEEEECCc------h-------HHHHH-HHHHhcCCCEEEEEe
Confidence            6999986642      1       12344 567899999887643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.23  E-value=6.8  Score=34.28  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=55.3

Q ss_pred             CeEEEEecch--hHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          104 KTIFIMGGGE--GSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       104 ~~VLiIG~G~--G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+|.+||+|.  +.+++.+++..  +..+|+++|.+++-++..++.+.          ++ ...|..+.++    ..|+|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g----------~~-~~~~~~e~~~----~aDvV   67 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYG----------LT-TTTDNNEVAK----NADIL   67 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHC----------CE-ECSCHHHHHH----HCSEE
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhC----------CE-EeCChHHHHH----hCCEE
Confidence            4799999983  34556666542  22479999999988776654322          12 2345455554    37999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+-.+ |.        ...+.++. +...|+++.+++...
T Consensus        68 ilav~-~~--------~~~~v~~~-l~~~l~~~~~vvs~~   97 (247)
T 3gt0_A           68 ILSIK-PD--------LYASIINE-IKEIIKNDAIIVTIA   97 (247)
T ss_dssp             EECSC-TT--------THHHHC----CCSSCTTCEEEECS
T ss_pred             EEEeC-HH--------HHHHHHHH-HHhhcCCCCEEEEec
Confidence            99874 21        12355566 677888887776443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.04  E-value=1.8  Score=38.67  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...+||++|+|+ |......+...++.+++.+|-|.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357999999984 44444444445788999998873

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=88.04  E-value=1.1  Score=41.64  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      ...++||++|+  |.|..+..+++..+ .+|++++.+++-.+.++++ ...      .-+.....|..+.+.+.  ...+
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-ga~------~~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL-GAD------ETVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTSTTHHHHHHHHTTTTCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CCC------EEEcCCcccHHHHHHHHhCCCCc
Confidence            34689999997  56777777777665 4899999999988888764 210      00000012333334332  2479


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||.... +       .     .++. +.+.|+++|.++.-.
T Consensus       237 d~vi~~~g-~-------~-----~~~~-~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          237 DKVVDHTG-A-------L-----YFEG-VIKATANGGRIAIAG  265 (343)
T ss_dssp             EEEEESSC-S-------S-----SHHH-HHHHEEEEEEEEESS
T ss_pred             eEEEECCC-H-------H-----HHHH-HHHhhccCCEEEEEe
Confidence            99986543 1       1     1233 457889999887643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.96  E-value=7  Score=37.97  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             CeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC--------CCCeEEEEccHHHHHhhc
Q 019699          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS--------DPRLELVINDARAELESR  172 (337)
Q Consensus       104 ~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~--------d~rv~v~~~D~~~~l~~~  172 (337)
                      .+|.+||+|.=  .++..+++.  ..+|+++|+|++.++..++... .....++        ..++++ ..|..+.++  
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~~--   77 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAVP--   77 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHGG--
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHHh--
Confidence            48999999843  334555554  3589999999998887766211 0000000        133443 345444443  


Q ss_pred             CCceeEEEEeCCCCCC-CCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          173 KESYDVIIGDLADPIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~-~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                        ..|+||+-.+.|.. .+.+.--+-.+.++. +...|+++-+++..++
T Consensus        78 --~aDvViiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           78 --EADIIFIAVGTPAGEDGSADMSYVLDAARS-IGRAMSRYILIVTKST  123 (450)
T ss_dssp             --GCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECSC
T ss_pred             --cCCEEEEEcCCCcccCCCcChHHHHHHHHH-HHhhCCCCCEEEEeee
Confidence              47999998875531 111111133456666 6778887776665543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.72  E-value=0.67  Score=43.31  Aligned_cols=97  Identities=20%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ...++||++|+  |-|..+..+++..+ .+|++++.+++-.+.+++.-...       -+.....|..+.+.+ ..+.+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~lGa~~-------~~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKCEACERLGAKR-------GINYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhcCCCE-------EEeCCchHHHHHHHHHhCCCce
Confidence            45689999963  45677777787765 58999999999999888742110       000001233333332 246799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||-...     ++        .++. +.+.|+++|.++.-.
T Consensus       238 vvid~~g-----~~--------~~~~-~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          238 IILDMIG-----AA--------YFER-NIASLAKDGCLSIIA  265 (353)
T ss_dssp             EEEESCC-----GG--------GHHH-HHHTEEEEEEEEECC
T ss_pred             EEEECCC-----HH--------HHHH-HHHHhccCCEEEEEE
Confidence            9885432     11        2334 457899999887643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.51  E-value=8.4  Score=34.58  Aligned_cols=76  Identities=18%  Similarity=0.343  Sum_probs=46.7

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChH-HHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~-vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~  171 (337)
                      +.+.||+.|+++|   .+++.+++.  ..+|.+++.++. ..+..++.....     ..++.++..|..+      +++.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKE-----GVKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTT-----TCCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence            4578888887654   234555554  368999998865 334444333221     3578888888643      2221


Q ss_pred             ---cCCceeEEEEeCC
Q 019699          172 ---RKESYDVIIGDLA  184 (337)
Q Consensus       172 ---~~~~yDvIi~D~~  184 (337)
                         .-++.|++|..+.
T Consensus       119 ~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               2257999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.45  E-value=1.8  Score=36.01  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             CCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc--CCce
Q 019699          103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR--KESY  176 (337)
Q Consensus       103 p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~--~~~y  176 (337)
                      ..+|+++|+|. |. +++.+.+..+ .+|+++|.|++-++.+++.           .++++.+|+.  +.+.+.  -+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRSE-----------GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence            46899999874 22 2344443302 5799999999888776542           2345666653  345443  4679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||+-.+++.        ........  .+.+.|++.++...
T Consensus       107 d~vi~~~~~~~--------~~~~~~~~--~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMPHHQ--------GNQTALEQ--LQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCSSHH--------HHHHHHHH--HHHTTCCSEEEEEE
T ss_pred             CEEEEeCCChH--------HHHHHHHH--HHHHCCCCEEEEEE
Confidence            99998664321        11222332  34667777776653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=87.37  E-value=7.1  Score=34.12  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH--H------HHHh
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--R------AELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~--~------~~l~  170 (337)
                      +.+.||+.|+++|   .+++.++++  ..+|.+++.+++-.+...+.+....    ..++.++..|.  .      +.++
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   84 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEET----GRQPQWFILDLLTCTSENCQQLAQ   84 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHH----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhc----CCCceEEEEecccCCHHHHHHHHH
Confidence            4578888887654   234555554  3689999999887766555443221    23667777776  1      1222


Q ss_pred             ---hcCCceeEEEEeCC
Q 019699          171 ---SRKESYDVIIGDLA  184 (337)
Q Consensus       171 ---~~~~~yDvIi~D~~  184 (337)
                         +.-++.|++|..+.
T Consensus        85 ~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           85 RIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHHHHCSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence               22357999999885

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=87.36  E-value=5.6  Score=37.02  Aligned_cols=77  Identities=12%  Similarity=0.115  Sum_probs=45.7

Q ss_pred             CCCCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHh----hhhhccCCCCCCCeEEEEccHHHHHhhcCC
Q 019699          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKS----YLVVNKEAFSDPRLELVINDARAELESRKE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~----~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~  174 (337)
                      ..+.+|.+||+|. |. ++..++...-..+++++|++++.++.-..    -++..     ..++++..+|.. -+    .
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-----~~~v~i~~~~~~-a~----~   72 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-----PQPVKTSYGTYE-DC----K   72 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-----SSCCEEEEECGG-GG----T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-----cCCeEEEeCcHH-Hh----C
Confidence            3467999999874 22 23334444323589999999986654211    12221     235666666632 12    4


Q ss_pred             ceeEEEEeCCCCC
Q 019699          175 SYDVIIGDLADPI  187 (337)
Q Consensus       175 ~yDvIi~D~~dp~  187 (337)
                      .-|+||+-...|.
T Consensus        73 ~aDvVvi~ag~p~   85 (326)
T 3pqe_A           73 DADIVCICAGANQ   85 (326)
T ss_dssp             TCSEEEECCSCCC
T ss_pred             CCCEEEEecccCC
Confidence            5899999876554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.24  E-value=8.9  Score=35.97  Aligned_cols=143  Identities=17%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             CCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhh----hccCCCCCCCeEEEEccHHHHHhhcCCc
Q 019699          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV----VNKEAFSDPRLELVINDARAELESRKES  175 (337)
Q Consensus       102 ~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~----~~~~~~~d~rv~v~~~D~~~~l~~~~~~  175 (337)
                      ...+|.+||+|.=+  ++..+++.  ..+|++++.+++.++..++.-.    .+...+ .+++++ ..|..+-+    ..
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~-t~d~~ea~----~~   99 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKA-YCDLKASL----EG   99 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEE-ESCHHHHH----TT
T ss_pred             cCCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEE-ECCHHHHH----hc
Confidence            34689999999533  34444443  3579999999998877665311    011111 234443 34554444    35


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      .|+||+-.+..         ..++.++. ++..|+++-+++.-....   . ... ..+.+.+++.++........-|.+
T Consensus       100 aDvVilaVp~~---------~~~~vl~~-i~~~l~~~~ivvs~~kGi---~-~~t-~~~se~i~~~l~~~~~~vlsgP~~  164 (356)
T 3k96_A          100 VTDILIVVPSF---------AFHEVITR-MKPLIDAKTRIAWGTKGL---A-KGS-RLLHEVVATELGQVPMAVISGPSL  164 (356)
T ss_dssp             CCEEEECCCHH---------HHHHHHHH-HGGGCCTTCEEEECCCSC---B-TTT-BCHHHHHHHHHCSCCEEEEESSCC
T ss_pred             CCEEEECCCHH---------HHHHHHHH-HHHhcCCCCEEEEEeCCC---C-cCc-cCHHHHHHHHcCCCCEEEEECccH
Confidence            79999876421         34677887 788898877665432111   1 111 233445566666433223455766


Q ss_pred             C-----C-ceEEEEEecC
Q 019699          256 A-----D-TWGWIMASDS  267 (337)
Q Consensus       256 ~-----~-~~~~~~as~~  267 (337)
                      .     + ....++++..
T Consensus       165 a~ev~~g~pt~~via~~~  182 (356)
T 3k96_A          165 ATEVAANLPTAVSLASNN  182 (356)
T ss_dssp             HHHHHTTCCEEEEEEESC
T ss_pred             HHHHHcCCCeEEEEecCC
Confidence            2     2 2345667743

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=87.12  E-value=8.8  Score=35.26  Aligned_cols=108  Identities=15%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             CCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+.+|.+||+|.=  +++..++......+|.++|++++..+. +......  ..+....+++..+|. +-+    ...|+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~--~~~~~~~~~i~~~~~-~al----~~aDv   77 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG--KVFAPKPVDIWHGDY-DDC----RDADL   77 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH--TTSSSSCCEEEECCG-GGT----TTCSE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH--hhhcCCCeEEEcCcH-HHh----CCCCE
Confidence            4579999999842  334444444335689999999985553 2222111  111223566665442 212    45899


Q ss_pred             EEEeCCCCCCCCCC-cCCc--h----HHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~--t----~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||+-...+...+.. ..+.  +    .++.+. +.+. .|++++++-
T Consensus        78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~a~~iv~  122 (316)
T 1ldn_A           78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VMAS-GFQGLFLVA  122 (316)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HHHH-TCCSEEEEC
T ss_pred             EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHH-HHHH-CCCCEEEEe
Confidence            99987654421210 0111  1    234444 3333 699987653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.06  E-value=4  Score=37.99  Aligned_cols=106  Identities=10%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             CCCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC--------CCeEEEEcc
Q 019699          101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD--------PRLELVIND  164 (337)
Q Consensus       101 ~~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d--------~rv~v~~~D  164 (337)
                      |...+|.+||+|.=  +++..++.+  ..+|+++|++++.++.++++...      ..+.+..        .+++.. .|
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~   80 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN   80 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence            55689999999842  344445544  36799999999998877765421      1111111        123322 23


Q ss_pred             HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      ..+-+    ..-|+||=..+..       --..++.|+. +.+.++|+-++..|+++
T Consensus        81 l~~a~----~~ad~ViEav~E~-------l~iK~~lf~~-l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           81 LAEAV----EGVVHIQECVPEN-------LDLKRKIFAQ-LDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             HHHHT----TTEEEEEECCCSC-------HHHHHHHHHH-HHTTCCSSSEEEECCSS
T ss_pred             hHhHh----ccCcEEeeccccH-------HHHHHHHHHH-HHHHhhhcceeehhhhh
Confidence            22223    3578887554421       1134688998 89999999999999753

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=87.02  E-value=4.3  Score=37.50  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECC
Q 019699           59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDID  135 (337)
Q Consensus        59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid  135 (337)
                      .|.+++... |.. ..+||...+.-+..-  .-.+. .-.+..++.+++++||+|.=  ..++.+.+..+..+|.+.+.+
T Consensus        80 ~v~L~d~~t-G~p~a~ld~~~lT~~RTaA--~s~la-a~~La~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  155 (313)
T 3hdj_A           80 VILLFSAAD-GRPLATCDAGTLTRKRTAA--CTVLA-AGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY  155 (313)
T ss_dssp             EEEEEETTT-CCEEEEECSHHHHHHHHHH--HHHHH-HHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT
T ss_pred             EEEEEECCC-CCEEEEEcCchhhhHHHHH--HHHHH-HHhhccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc
Confidence            455666544 554 467887766533211  11111 22344577899999999842  334555554567899999999


Q ss_pred             hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                       ..-++++++-...     .-+++..  |..+.++    ..|+|++-.+.
T Consensus       156 -~a~~la~~l~~~~-----g~~~~~~--~~~eav~----~aDIVi~aT~s  193 (313)
T 3hdj_A          156 -ASPEILERIGRRC-----GVPARMA--APADIAA----QADIVVTATRS  193 (313)
T ss_dssp             -CCHHHHHHHHHHH-----TSCEEEC--CHHHHHH----HCSEEEECCCC
T ss_pred             -HHHHHHHHHHHhc-----CCeEEEe--CHHHHHh----hCCEEEEccCC
Confidence             6656665532111     1123333  7766664    48999988764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.89  E-value=2.4  Score=36.41  Aligned_cols=93  Identities=18%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             eEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhc-CCceeEE
Q 019699          105 TIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDVI  179 (337)
Q Consensus       105 ~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~-~~~yDvI  179 (337)
                      +|+++|+|.=  .+++.+.+.  ..+|+++|.|++.++...+.          ..+.++.+|+.+  .+++. -+..|+|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~~----------~~~~~i~gd~~~~~~l~~a~i~~ad~v   69 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAKK----------LKATIIHGDGSHKEILRDAEVSKNDVV   69 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHH----------SSSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHH----------cCCeEEEcCCCCHHHHHhcCcccCCEE
Confidence            6999998642  233444443  35799999999988764432          135678888753  34442 3679999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-..+..         ...+... ..+.+.+...+++..
T Consensus        70 i~~~~~d~---------~n~~~~~-~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           70 VILTPRDE---------VNLFIAQ-LVMKDFGVKRVVSLV   99 (218)
T ss_dssp             EECCSCHH---------HHHHHHH-HHHHTSCCCEEEECC
T ss_pred             EEecCCcH---------HHHHHHH-HHHHHcCCCeEEEEE
Confidence            98765321         1122222 344566666666554

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=86.59  E-value=3.4  Score=37.89  Aligned_cols=98  Identities=15%  Similarity=0.313  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      |...++|-+||+|  +++++..++ .  .-+|+++|.+++.++.+++.+.  ...+  .++++. .|..+ +    ..-|
T Consensus         9 ~~~~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~l~--~~~~--~~i~~~-~~~~~-~----~~aD   75 (293)
T 1zej_A            9 HHHHMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQIP--EELL--SKIEFT-TTLEK-V----KDCD   75 (293)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHSC--GGGG--GGEEEE-SSCTT-G----GGCS
T ss_pred             ccCCCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHHHH--HHHh--CCeEEe-CCHHH-H----cCCC
Confidence            3456899999999  455676666 4  3589999999999988877621  0000  134432 33322 3    3579


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +||.-.++..       -...++|.. +...  |+.+++.|++
T Consensus        76 lVieavpe~~-------~vk~~l~~~-l~~~--~~~IlasntS  108 (293)
T 1zej_A           76 IVMEAVFEDL-------NTKVEVLRE-VERL--TNAPLCSNTS  108 (293)
T ss_dssp             EEEECCCSCH-------HHHHHHHHH-HHTT--CCSCEEECCS
T ss_pred             EEEEcCcCCH-------HHHHHHHHH-HhcC--CCCEEEEECC
Confidence            9999887432       123466776 5554  8888888864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=86.41  E-value=0.93  Score=42.35  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      ...++||++|+  |-|..+..+++..+ .+|++++.+++-.+.++++ ...      .-+.....|..+-+.+ . ...+
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQMAEKL-GAA------AGFNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCc------EEEecCChHHHHHHHHHhcCCCc
Confidence            45688999984  55666667777654 5899999999988888654 210      0000001233333333 2 2469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||....     ++        .++. +.+.|+++|.++.-.
T Consensus       233 d~vi~~~G-----~~--------~~~~-~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          233 NLILDCIG-----GS--------YWEK-NVNCLALDGRWVLYG  261 (354)
T ss_dssp             EEEEESSC-----GG--------GHHH-HHHHEEEEEEEEECC
T ss_pred             eEEEECCC-----ch--------HHHH-HHHhccCCCEEEEEe
Confidence            99986542     11        1233 456789999987643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=86.41  E-value=1.1  Score=41.89  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=59.4

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      ...++||++|+  |.|..+..+++..+ .+|++++.+++-.+.+++.-...       -+.....|..+.+.+ . .+.+
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~ga~~-------~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGAHE-------VFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSE-------EEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHcCCCE-------EEeCCCchHHHHHHHHcCCCCc
Confidence            45689999996  55666777777665 58999999999888887642100       000001233333332 2 2479


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||....     +        +.+.. +.+.|+++|.++.-.
T Consensus       241 D~vi~~~G-----~--------~~~~~-~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          241 DIIIEMLA-----N--------VNLSK-DLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EEEEESCH-----H--------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EEEEECCC-----h--------HHHHH-HHHhccCCCEEEEEe
Confidence            99985532     1        12344 457899999987643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.36  E-value=5.3  Score=36.13  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=62.9

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC------------CCeEEEE
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD------------PRLELVI  162 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d------------~rv~v~~  162 (337)
                      .++|.+||+|.  +.++..+++.  ..+|+++|.+++.++.+++....      ..+.+.+            .++++ .
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~   91 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-S   91 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-E
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-e
Confidence            46899999985  3355556654  35899999999988876553221      0111111            13443 2


Q ss_pred             ccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       163 ~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .|..+-+    ...|+||.-.+...      . ...++++. +...++++.+++.+..
T Consensus        92 ~~~~~~~----~~aD~Vi~avp~~~------~-~~~~v~~~-l~~~~~~~~iv~s~ts  137 (302)
T 1f0y_A           92 TDAASVV----HSTDLVVEAIVENL------K-VKNELFKR-LDKFAAEHTIFASNTS  137 (302)
T ss_dssp             SCHHHHT----TSCSEEEECCCSCH------H-HHHHHHHH-HTTTSCTTCEEEECCS
T ss_pred             cCHHHhh----cCCCEEEEcCcCcH------H-HHHHHHHH-HHhhCCCCeEEEECCC
Confidence            3433233    45899998875321      1 13567787 7888988888776653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=86.28  E-value=5.8  Score=34.25  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH--------HHHHh
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--------RAELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~--------~~~l~  170 (337)
                      +.+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...    ..+++.++..|.        .++++
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~d~d~~~~~~~~~~~~   86 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSA----GQPQPLIIALNLENATAQQYRELAA   86 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT----TSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhc----CCCCceEEEeccccCCHHHHHHHHH
Confidence            3567888887544   234445543  368999999998777666555432    135666666654        12222


Q ss_pred             h---cCCceeEEEEeCC
Q 019699          171 S---RKESYDVIIGDLA  184 (337)
Q Consensus       171 ~---~~~~yDvIi~D~~  184 (337)
                      .   .-++.|++|..+.
T Consensus        87 ~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           87 RVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             HHHHHHSCCSEEEECCC
T ss_pred             HHHHhCCCCCEEEECCc
Confidence            2   2257999999886

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=86.14  E-value=9.3  Score=33.45  Aligned_cols=77  Identities=13%  Similarity=0.099  Sum_probs=49.1

Q ss_pred             CCCeEEEEecch----h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh
Q 019699          102 NPKTIFIMGGGE----G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~----G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~  170 (337)
                      +.+.||+.|+++    | .+++.+++.  ..+|.+++.++...+.+++.....    ...++.++..|..+      +++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTL----DRNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTS----SSCCCEEEECCCSSSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhc----CCCCceEEeCCCCCHHHHHHHHH
Confidence            567899999763    2 245566654  368999998876666555543322    23478888887632      222


Q ss_pred             h---cCCceeEEEEeCC
Q 019699          171 S---RKESYDVIIGDLA  184 (337)
Q Consensus       171 ~---~~~~yDvIi~D~~  184 (337)
                      .   .-++.|++|..+.
T Consensus        80 ~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCeeEEEEccc
Confidence            2   2257999999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=86.03  E-value=1.9  Score=40.48  Aligned_cols=97  Identities=15%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++||++|  +|-|..+..+++..+ .+|++++ +++-.+.++++ +..      .-+.....|..+-+.+. ..+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga~------~v~~~~~~~~~~~~~~~-~g~D~  251 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVC-SQDASELVRKL-GAD------DVIDYKSGSVEEQLKSL-KPFDF  251 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TCS------EEEETTSSCHHHHHHTS-CCBSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEe-ChHHHHHHHHc-CCC------EEEECCchHHHHHHhhc-CCCCE
Confidence            3467999999  456777788888765 5888888 66667777654 210      00000012333444432 46999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||-....     +.      .-++. ..+.|+++|.++.-.
T Consensus       252 vid~~g~-----~~------~~~~~-~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          252 ILDNVGG-----ST------ETWAP-DFLKKWSGATYVTLV  280 (375)
T ss_dssp             EEESSCT-----TH------HHHGG-GGBCSSSCCEEEESC
T ss_pred             EEECCCC-----hh------hhhHH-HHHhhcCCcEEEEeC
Confidence            9854421     10      11233 457899999987643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=85.97  E-value=20  Score=32.57  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             CCCeEEEEecch--hHHHHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+|.+||+|.  ..+++.+++. +..+|+++|.+  ++..+.+++.           .++ ...|..+.++    ..|
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~~~-----------g~~-~~~~~~e~~~----~aD   85 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAEEL-----------GVS-CKASVAEVAG----ECD   85 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHHHT-----------TCE-ECSCHHHHHH----HCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHHHC-----------CCE-EeCCHHHHHh----cCC
Confidence            346899999983  3455666665 33489999997  5666665542           122 2334445554    379


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      +||+-.+.+.         ..+.++. +...|+++-+++ +.++    ..+.....+.+.+.+.++.+
T Consensus        86 vVi~~vp~~~---------~~~~~~~-l~~~l~~~~ivv-d~st----~~~~~~~~~~~~~~~~~~g~  138 (312)
T 3qsg_A           86 VIFSLVTAQA---------ALEVAQQ-AGPHLCEGALYA-DFTS----CSPAVKRAIGDVISRHRPSA  138 (312)
T ss_dssp             EEEECSCTTT---------HHHHHHH-HGGGCCTTCEEE-ECCC----CCHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEecCchh---------HHHHHHh-hHhhcCCCCEEE-EcCC----CCHHHHHHHHHHHHhhcCCC
Confidence            9999886432         1245566 678888877665 4322    13444555566666554443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.96  E-value=6.6  Score=34.49  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~--  170 (337)
                      +.++||+.|+++|   .+++.+++.  ..+|.+++.+++-++...+.++        .++.++..|..+.      ++  
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFG--------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC--------CcceEEEccCCCHHHHHHHHHHH
Confidence            5678999988654   234555554  3689999999887765554331        3577777776421      21  


Q ss_pred             -hcCCceeEEEEeCC
Q 019699          171 -SRKESYDVIIGDLA  184 (337)
Q Consensus       171 -~~~~~yDvIi~D~~  184 (337)
                       +.-++.|++|..+.
T Consensus        77 ~~~~g~id~lv~nAg   91 (255)
T 4eso_A           77 GQTLGAIDLLHINAG   91 (255)
T ss_dssp             HHHHSSEEEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence             12257999999875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.90  E-value=11  Score=33.23  Aligned_cols=76  Identities=20%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      +.+.||+.|++.|   .+++.+++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+      +++  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDT-----GRRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4678999998765   345555554  368999999988776655544322     3578888877642      222  


Q ss_pred             -hcCCceeEEEEeCC
Q 019699          171 -SRKESYDVIIGDLA  184 (337)
Q Consensus       171 -~~~~~yDvIi~D~~  184 (337)
                       +.-++.|++|..+.
T Consensus        83 ~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           83 MKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHTSCCSEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence             12357999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.89  E-value=2.4  Score=41.81  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=63.7

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHH
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARA  167 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~  167 (337)
                      .++|.+||+|.  ++++..+++.  ..+|+++|++++.++.+++.....      .+.+..       .|++.. .|. +
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~   80 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-H   80 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-H
Confidence            46899999984  4566666664  257999999999998887653211      010100       133332 232 2


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      -+    ..-|+||.-.++..       -..++.|+. +...++++.+++.|++
T Consensus        81 ~~----~~aDlVIeAVpe~~-------~vk~~v~~~-l~~~~~~~~IlasntS  121 (483)
T 3mog_A           81 AL----AAADLVIEAASERL-------EVKKALFAQ-LAEVCPPQTLLTTNTS  121 (483)
T ss_dssp             GG----GGCSEEEECCCCCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             Hh----cCCCEEEEcCCCcH-------HHHHHHHHH-HHHhhccCcEEEecCC
Confidence            12    35799998875321       123567787 7888999888887764

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=85.86  E-value=2.8  Score=38.59  Aligned_cols=99  Identities=16%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             CceeEEEEeCCCCCCCCCC-c----C--CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          174 ESYDVIIGDLADPIEGGPC-Y----K--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~-~----~--L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      ++||+|++|..-+.. +-. .    +  +.+. ..+. +.++|+|||.+++-.-    -........+...|++.|..++
T Consensus       205 ~k~DvV~SDMApn~s-Gh~yqQC~DHarii~L-al~f-A~~vLkPGGtfV~Kvy----ggaDr~se~lv~~LaR~F~~Vr  277 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYK-YHHYQQCEDHAIKLSM-LTKK-ACLHLNPGGTCVSIGY----GYADRASESIIGAIARQFKFSR  277 (320)
T ss_dssp             CCEEEEEEECCCCCC-SCHHHHHHHHHHHHHH-THHH-HGGGEEEEEEEEEEEC----CCCSHHHHHHHHHHHTTEEEEE
T ss_pred             CcCCEEEEcCCCCCC-CccccccchHHHHHHH-HHHH-HHHhcCCCceEEEEEe----cCCcccHHHHHHHHHHhcceee
Confidence            679999999875442 211 0    0  0001 2232 4689999999998751    1122355788899999999887


Q ss_pred             EEEeeccccCCceEEEEEec---CCCCCCHHHHHHHH
Q 019699          247 PYSAHIPSFADTWGWIMASD---SPFTLSAEELDMKV  280 (337)
Q Consensus       247 ~~~~~vP~~~~~~~~~~as~---~p~~~~~~~l~~r~  280 (337)
                      ...-. -+....=.|++|+.   .-...+...+..++
T Consensus       278 ~vKP~-ASR~StEvf~La~gf~g~~r~~~~~~l~~~l  313 (320)
T 2hwk_A          278 VCKPK-SSLEETEVLFVFIGYDRKARTHNPYKLSSTL  313 (320)
T ss_dssp             EECCT-TCCSTTCEEEEEEEECCCCCCCCHHHHHHHH
T ss_pred             eeCCC-CccccceEEEEEEeecCCccccCHHHhcchh
Confidence            65411 01122234777764   22334555555443

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=85.76  E-value=23  Score=39.28  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=91.6

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh----------
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----------  171 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~----------  171 (337)
                      .-++++|-+|.|++..-+.+. +. ..+.++|+|+..++.-+.+++         ...++.+|..+++..          
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~p---------~~~~~~~DI~~l~~~~~~gdi~~~~  920 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNNP---------GTTVFTEDCNVLLKLVMAGEVTNSL  920 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHCT---------TSEEECSCHHHHHHHHTTTCSBCSS
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC---------CCcEeeccHHHHhHhhhccchhhhh
Confidence            458999999999998877664 43 467899999999998887753         346778888766421          


Q ss_pred             ---c--CCceeEEEEeCC-CCCC-CCCC---------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699          172 ---R--KESYDVIIGDLA-DPIE-GGPC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY  235 (337)
Q Consensus       172 ---~--~~~yDvIi~D~~-dp~~-~~p~---------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~  235 (337)
                         .  ....|+|+--++ -+.. .+..         ..|+ .+|++. + +.++|.-+++=|...--.+.....+..++
T Consensus       921 ~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~-~~~lri-v-~~~rPk~fv~ENV~glls~~~g~~~~~il  997 (1330)
T 3av4_A          921 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLV-VSFLSY-C-DYYRPRFFLLENVRNFVSYRRSMVLKLTL  997 (1330)
T ss_dssp             CCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHH-HHHHHH-H-HHHCCSEEEEEEEGGGGTTTTTHHHHHHH
T ss_pred             hhhccccCccceEEecCCCcccccccccccccccchhhHHH-HHHHHH-H-HHhcCcEEEEeccHHHhccCccHHHHHHH
Confidence               0  135899998876 2221 1110         0111 356664 4 56899877766652110012334667777


Q ss_pred             HHHhhhcCceeEEEeeccccC----CceEEEEEec
Q 019699          236 NTLRQVFKYVVPYSAHIPSFA----DTWGWIMASD  266 (337)
Q Consensus       236 ~~l~~vF~~v~~~~~~vP~~~----~~~~~~~as~  266 (337)
                      +.|.+.-=.+......-..||    ..-.|++|++
T Consensus       998 ~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 1032 (1330)
T 3av4_A          998 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA 1032 (1330)
T ss_dssp             HHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEEC
T ss_pred             HHHHhcCCeeeEEEecHHHcCCCccccEEEEEEec
Confidence            777765333433333333443    2345788875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=85.58  E-value=1.5  Score=40.71  Aligned_cols=64  Identities=16%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE  170 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~  170 (337)
                      ..+..-|||--+|+|+++.++.+.  ..+..++|+++..++++++.+...     ......+.+|+++...
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~i~~  313 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDN-----NISEEKITDIYNRILN  313 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCS-----CSCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHc
Confidence            355678999999999999998886  378999999999999999987532     1235556666666543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=85.53  E-value=6.8  Score=31.09  Aligned_cols=67  Identities=25%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             CCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE-EEccHHHHHhhcCCceeE
Q 019699          103 PKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESRKESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v-~~~D~~~~l~~~~~~yDv  178 (337)
                      .++|++||+|  .+++.+++.   .+. +|++++.+++-.+...+.+.          ..+ ...|..+.++    ..|+
T Consensus        21 ~~~v~iiG~G--~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~----------~~~~~~~~~~~~~~----~~Di   83 (144)
T 3oj0_A           21 GNKILLVGNG--MLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE----------YEYVLINDIDSLIK----NNDV   83 (144)
T ss_dssp             CCEEEEECCS--HHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT----------CEEEECSCHHHHHH----TCSE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC----------CceEeecCHHHHhc----CCCE
Confidence            7899999985  444444432   344 49999999987654332222          122 2345445553    4899


Q ss_pred             EEEeCCCC
Q 019699          179 IIGDLADP  186 (337)
Q Consensus       179 Ii~D~~dp  186 (337)
                      ||.-.+.+
T Consensus        84 vi~at~~~   91 (144)
T 3oj0_A           84 IITATSSK   91 (144)
T ss_dssp             EEECSCCS
T ss_pred             EEEeCCCC
Confidence            99877643

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=85.39  E-value=1.4  Score=41.52  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ..+||+||+|+ |+.....+...++.+++.||-|.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            57999999984 33333333345799999999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.38  E-value=3.5  Score=36.31  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---------HH
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------EL  169 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---------~l  169 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+         .+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   78 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAA-----GGRIVARSLDARNEDEVTAFLNAA   78 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEECcCCCHHHHHHHHHHH
Confidence            5678999988755   344555554  368999999988766655544322     3578888888632         22


Q ss_pred             hhcCCceeEEEEeCCC
Q 019699          170 ESRKESYDVIIGDLAD  185 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~d  185 (337)
                      .+. ++.|++|.++..
T Consensus        79 ~~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           79 DAH-APLEVTIFNVGA   93 (252)
T ss_dssp             HHH-SCEEEEEECCCC
T ss_pred             Hhh-CCceEEEECCCc
Confidence            223 689999998863

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.31  E-value=7.5  Score=34.73  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|..++.+++-++...+.+...     ..++..+..|..+      ++++ 
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~-----g~~~~~~~~Dvt~~~~v~~~~~~~   78 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGM-----GKEVLGVKADVSKKKDVEEFVRRT   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4577888887655   234455543  478999999998877666655432     3577888888632      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|+++.++-
T Consensus        79 ~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           79 FETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence              2367999999885

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=85.28  E-value=14  Score=35.78  Aligned_cols=108  Identities=17%  Similarity=0.195  Sum_probs=58.6

Q ss_pred             CeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCC----C---CCCCeEEEEccHHHHHhhcC
Q 019699          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA----F---SDPRLELVINDARAELESRK  173 (337)
Q Consensus       104 ~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~----~---~d~rv~v~~~D~~~~l~~~~  173 (337)
                      .+|.+||+|.  +.++..+++.....+|+++|++++.++..++.- +.....    .   ...++++ ..|..+-++   
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~~---   81 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAIK---   81 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHHh---
Confidence            5899999994  334556666532357999999999887654310 000000    0   0023332 344433343   


Q ss_pred             CceeEEEEeCCCCCCCCC-----CcCC-chHHHHHHHhccccCCCceEEE
Q 019699          174 ESYDVIIGDLADPIEGGP-----CYKL-YTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p-----~~~L-~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                       ..|+||+-.+.|.....     ...| +..+..+. +...|+++.+++.
T Consensus        82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~  129 (467)
T 2q3e_A           82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARR-IVQNSNGYKIVTE  129 (467)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHTCCSEEEEEE
T ss_pred             -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHH-HHhhCCCCCEEEE
Confidence             47999999876542100     0011 12445565 5667887666543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=84.96  E-value=8.3  Score=35.41  Aligned_cols=104  Identities=26%  Similarity=0.310  Sum_probs=55.1

Q ss_pred             eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +|.+||+|.=+  ++..+++.....+|+++|++++.++.....+..... + .+..++...|. +-+    ...|+||+-
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~d~-~~~----~~aDvViia   74 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-F-TRRANIYAGDY-ADL----KGSDVVIVA   74 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-G-SCCCEEEECCG-GGG----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-h-cCCcEEEeCCH-HHh----CCCCEEEEc
Confidence            78999997533  334444433234899999999877654432211000 1 12334444552 222    458999998


Q ss_pred             CCCCCCCCCC-cCCc------hHHHHHHHhccccCCCceEEE
Q 019699          183 LADPIEGGPC-YKLY------TKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       183 ~~dp~~~~p~-~~L~------t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ...+...+.. ..|.      -++..+. +.+. .|++++++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~~~~~ii~  114 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARN-VSKY-APDSIVIV  114 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHH-HHHH-CTTCEEEE
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHhh-CCCeEEEE
Confidence            8765411100 0011      1345554 4444 58897765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=84.84  E-value=6  Score=30.59  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=42.3

Q ss_pred             CCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCcee
Q 019699          103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYD  177 (337)
Q Consensus       103 p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~yD  177 (337)
                      ..+|+++|+|.-+  +++.+.+.  ..+|+++|.+++.++..++.+          .+.++.+|..  +.+... -...|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCHHHHHHcCcccCC
Confidence            3589999986432  23444443  368999999998776554321          2344555543  233322 35799


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +|++-.+
T Consensus        72 ~vi~~~~   78 (140)
T 1lss_A           72 MYIAVTG   78 (140)
T ss_dssp             EEEECCS
T ss_pred             EEEEeeC
Confidence            9998864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=84.68  E-value=13  Score=34.55  Aligned_cols=112  Identities=17%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             cCCCCCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699           99 HHPNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      +...+.+|.+||+|. |. ++..++...-..+++.+|++++.++.-..-+.... .+. +++++..+|-.. +    ...
T Consensus         5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~~-~~~~i~~~~~~a-~----~~a   77 (326)
T 3vku_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-PFT-SPKKIYSAEYSD-A----KDA   77 (326)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS-CCCEEEECCGGG-G----TTC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-hhc-CCcEEEECcHHH-h----cCC
Confidence            345678999999874 22 23334444334589999999986654332222111 111 356666665322 2    458


Q ss_pred             eEEEEeCCCCCCCCC-CcCCc--h----HHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p-~~~L~--t----~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||+-+..|...+. -..|+  +    +++-+. +.+ ..|++++++-+
T Consensus        78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~-~~p~a~ilvvt  125 (326)
T 3vku_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDP-IVD-SGFNGIFLVAA  125 (326)
T ss_dssp             SEEEECCCCC----------------CHHHHHHH-HHT-TTCCSEEEECS
T ss_pred             CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHH-HHh-cCCceEEEEcc
Confidence            999987764432111 11233  1    233343 333 57999876543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=84.60  E-value=14  Score=33.18  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CeEEEEecch--hHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          104 KTIFIMGGGE--GSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~--G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+|.+||+|.  +.+++.+++.. +..+|+++|.+++-.+..++.+          .+++ ..|..+.+    ...|+||
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~----------gi~~-~~~~~~~~----~~aDvVi   68 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC----------GVHT-TQDNRQGA----LNADVVV   68 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT----------CCEE-ESCHHHHH----SSCSEEE
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc----------CCEE-eCChHHHH----hcCCeEE
Confidence            6899999983  34455555542 2347999999998877666532          1232 34544544    3579999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccc-cCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~-L~p~Gvlv~~  218 (337)
                      +-.+. .        ...+.++. ++.. |+++-+++..
T Consensus        69 lav~p-~--------~~~~vl~~-l~~~~l~~~~iiiS~   97 (280)
T 3tri_A           69 LAVKP-H--------QIKMVCEE-LKDILSETKILVISL   97 (280)
T ss_dssp             ECSCG-G--------GHHHHHHH-HHHHHHTTTCEEEEC
T ss_pred             EEeCH-H--------HHHHHHHH-HHhhccCCCeEEEEe
Confidence            98741 1        13567777 6777 7766566543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=84.53  E-value=3.7  Score=39.41  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY  145 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~  145 (337)
                      ...++||++|+  |-|..+..+++..+ .++++++.+++-.+.++++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~l  264 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRAL  264 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc
Confidence            45689999995  45677778888765 5888888999989988764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=84.27  E-value=2.6  Score=39.48  Aligned_cols=96  Identities=11%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ....+||++|+  |.|.++..+++..+. +|+++ .+++=.+.++++-..       .-+.....|..+.+++ +.+.+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~-~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSRGAE-------EVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEE-ECGGGHHHHHHTTCS-------EEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCc-------EEEECCCchHHHHHHHHccCCcc
Confidence            45689999998  367888888888754 77776 478878888875211       0011111344444544 345699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhcccc-CCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L-~p~Gvlv~~  218 (337)
                      +||--..     ++       +.++. +.+.| +++|.++.-
T Consensus       234 ~v~d~~g-----~~-------~~~~~-~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          234 YALDCIT-----NV-------ESTTF-CFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EEEESSC-----SH-------HHHHH-HHHHSCTTCEEEEES
T ss_pred             EEEECCC-----ch-------HHHHH-HHHHhhcCCCEEEEE
Confidence            9884332     11       23444 45678 699998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=84.22  E-value=4.9  Score=37.11  Aligned_cols=75  Identities=29%  Similarity=0.402  Sum_probs=48.8

Q ss_pred             CCCeEEEEecchhHHHHH----HHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCc
Q 019699          102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES  175 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~----ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~  175 (337)
                      +.++||+.|+. |.++++    +++.++..+|++++.++.-.+..++.+.       +++++++.+|..+.  +.+.-+.
T Consensus        20 ~~k~vlVTGat-G~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           20 DNQTILITGGT-GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-------DPRMRFFIGDVRDLERLNYALEG   91 (344)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-------CTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhc
Confidence            45789998864 555444    4443233489999999875544433321       36899999997643  3333357


Q ss_pred             eeEEEEeCC
Q 019699          176 YDVIIGDLA  184 (337)
Q Consensus       176 yDvIi~D~~  184 (337)
                      .|+||..+.
T Consensus        92 ~D~Vih~Aa  100 (344)
T 2gn4_A           92 VDICIHAAA  100 (344)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=84.20  E-value=16  Score=34.19  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=66.9

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+|.+||+|.  ..+++.+++.  ..+|+++|.+++.++.+.+.           .++ ...|..+.++.. ++.|+||
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-----------g~~-~~~s~~e~~~~a-~~~DvVi   86 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-----------GIA-GARSIEEFCAKL-VKPRVVW   86 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-----------TCB-CCSSHHHHHHHS-CSSCEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-----------CCE-EeCCHHHHHhcC-CCCCEEE
Confidence            46899999983  3445666664  26899999999887766542           111 234556666543 4579999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      +-.+.+         ...+.++. +...|+++-+++ ..++.    .+.....+.+.+++
T Consensus        87 ~~vp~~---------~v~~vl~~-l~~~l~~g~iiI-d~st~----~~~~~~~~~~~l~~  131 (358)
T 4e21_A           87 LMVPAA---------VVDSMLQR-MTPLLAANDIVI-DGGNS----HYQDDIRRADQMRA  131 (358)
T ss_dssp             ECSCGG---------GHHHHHHH-HGGGCCTTCEEE-ECSSC----CHHHHHHHHHHHHT
T ss_pred             EeCCHH---------HHHHHHHH-HHhhCCCCCEEE-eCCCC----ChHHHHHHHHHHHH
Confidence            987532         34566777 678888876665 44321    23333445555554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.18  E-value=1.6  Score=37.69  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             CCCeEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe-EEEEccHHHHHhhcCCce
Q 019699          102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv-~v~~~D~~~~l~~~~~~y  176 (337)
                      ..++||+.|+. |.++    +++++.  ..+|+++..++.-.+..+.           .++ +++.+|..+.+.+.-+..
T Consensus        20 ~~~~ilVtGat-G~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~~   85 (236)
T 3e8x_A           20 QGMRVLVVGAN-GKVARYLLSELKNK--GHEPVAMVRNEEQGPELRE-----------RGASDIVVANLEEDFSHAFASI   85 (236)
T ss_dssp             -CCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH-----------TTCSEEEECCTTSCCGGGGTTC
T ss_pred             CCCeEEEECCC-ChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHh-----------CCCceEEEcccHHHHHHHHcCC
Confidence            46789999874 4444    444443  3689999998875443221           367 888888763333333579


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |+||..+.
T Consensus        86 D~vi~~ag   93 (236)
T 3e8x_A           86 DAVVFAAG   93 (236)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998876

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=84.05  E-value=22  Score=31.49  Aligned_cols=90  Identities=26%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+|.+||+|.  +.++..+.+.....+|.++|.+++.++.+++. ...     +    ....|..+.+    ...|+||
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~-----~----~~~~~~~~~~----~~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIV-----D----EATADFKVFA----ALADVII   71 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSC-----S----EEESCTTTTG----GGCSEEE
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCc-----c----cccCCHHHhh----cCCCEEE
Confidence            35899999984  34455555543235899999999888766552 110     0    1223322222    3589999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccc-cCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~-L~p~Gvlv  216 (337)
                      +-.+.+       .  ..+.++. +... |+++.+++
T Consensus        72 lavp~~-------~--~~~v~~~-l~~~~l~~~~ivi   98 (290)
T 3b1f_A           72 LAVPIK-------K--TIDFIKI-LADLDLKEDVIIT   98 (290)
T ss_dssp             ECSCHH-------H--HHHHHHH-HHTSCCCTTCEEE
T ss_pred             EcCCHH-------H--HHHHHHH-HHhcCCCCCCEEE
Confidence            987521       1  2566777 6777 88766555

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=83.98  E-value=14  Score=33.94  Aligned_cols=108  Identities=16%  Similarity=0.261  Sum_probs=55.3

Q ss_pred             CCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       103 p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+|.+||+|.=+.  +..++...-..++..+|++++-++. +...-...  .+. .++++..++- +-+    ..-|+|
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~--~~~-~~~~v~~~~~-~a~----~~aDvV   76 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ--AFT-APKKIYSGEY-SDC----KDADLV   76 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG--GGS-CCCEEEECCG-GGG----TTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH--Hhc-CCeEEEECCH-HHh----CCCCEE
Confidence            36899999975333  2333333335689999999976664 33221111  122 4566665442 222    457999


Q ss_pred             EEeCCCCCCCCCC-cCC--chHHHHHHHhc--cccCCCceEEEe
Q 019699          180 IGDLADPIEGGPC-YKL--YTKSFYEFVVK--PRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~-~~L--~t~ef~~~~~~--~~L~p~Gvlv~~  218 (337)
                      |+-...|...+.. ..+  .+...++.++.  ...+|+|++++-
T Consensus        77 ii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  120 (318)
T 1ez4_A           77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA  120 (318)
T ss_dssp             EECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            9887654321110 112  22334443121  224899988764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=83.97  E-value=3.7  Score=35.31  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             CeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhhcCC
Q 019699          104 KTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELESRKE  174 (337)
Q Consensus       104 ~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~~~~  174 (337)
                      +.||+.|+++|   .+++.++++  ..+|.+++.+++-.+...+.+        ..++.++..|..      +.++...+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~   71 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCL--------SNNVGYRARDLASHQEVEQLFEQLDS   71 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTC--------SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred             CEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH--------hhccCeEeecCCCHHHHHHHHHHHhh
Confidence            46888888654   234455554  357999999998776655433        245667776653      33444456


Q ss_pred             ceeEEEEeCC
Q 019699          175 SYDVIIGDLA  184 (337)
Q Consensus       175 ~yDvIi~D~~  184 (337)
                      .+|++|..+.
T Consensus        72 ~~d~lv~~Ag   81 (230)
T 3guy_A           72 IPSTVVHSAG   81 (230)
T ss_dssp             CCSEEEECCC
T ss_pred             cCCEEEEeCC
Confidence            6799998875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.92  E-value=11  Score=34.15  Aligned_cols=90  Identities=13%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv  178 (337)
                      -..++|++||+|.=+ .....++..+ .+|++++.+++-.+.++++ .          ++.+. .+..+.+    ...|+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~~-g----------~~~~~~~~l~~~l----~~aDv  216 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALG-AKVKVGARESDLLARIAEM-G----------MEPFHISKAAQEL----RDVDV  216 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-T----------SEEEEGGGHHHHT----TTCSE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHC-C----------CeecChhhHHHHh----cCCCE
Confidence            357899999987422 2223333344 4899999998765544332 1          12221 2333333    56999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++-.+.        +++..+.++     .++++++++ |..
T Consensus       217 Vi~~~p~--------~~i~~~~l~-----~mk~~~~li-n~a  244 (293)
T 3d4o_A          217 CINTIPA--------LVVTANVLA-----EMPSHTFVI-DLA  244 (293)
T ss_dssp             EEECCSS--------CCBCHHHHH-----HSCTTCEEE-ECS
T ss_pred             EEECCCh--------HHhCHHHHH-----hcCCCCEEE-Eec
Confidence            9987642        344454433     467877665 654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=83.91  E-value=5.6  Score=34.42  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      +.+.||+.|+++|   .+++.++++  ..+|.+++.+++-.+...+.+...     ..++.++..|..+      +++  
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   76 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEK-----GFKARGLVLNISDIESIQNFFAEI   76 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            4578888887654   245555554  368999999988776655544322     3578888888642      222  


Q ss_pred             -hcCCceeEEEEeCC
Q 019699          171 -SRKESYDVIIGDLA  184 (337)
Q Consensus       171 -~~~~~yDvIi~D~~  184 (337)
                       +..++.|++|..+.
T Consensus        77 ~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           77 KAENLAIDILVNNAG   91 (247)
T ss_dssp             HHTTCCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             22357999999886

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=83.78  E-value=2.3  Score=38.06  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH----------
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----------  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~----------  168 (337)
                      ..+.||+.|+++|   .+++.++++  ..+|.++..++.-.+.+.+.+...    ...++.++..|..+.          
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNS----NHENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT----TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEccCCCcHHHHHHHHHH
Confidence            4577888887644   244555554  368999999988766555544321    235788888776432          


Q ss_pred             HhhcCCceeEEEEeCC
Q 019699          169 LESRKESYDVIIGDLA  184 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~  184 (337)
                      +.+..++.|++|.++.
T Consensus        85 ~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           85 IKTHFGKLDILVNNAG  100 (311)
T ss_dssp             HHHHHSSCCEEEECCC
T ss_pred             HHHhCCCCCEEEECCc
Confidence            1112257999999885

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=83.74  E-value=12  Score=33.39  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~~-  171 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+.      +++ 
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVGA-----GGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHTTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4578888887654   234555554  368999999988776655544321     35788888886432      221 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus       100 ~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A          100 VLKFGHLDIVVANAG  114 (283)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence              1257999999876

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.65  E-value=8.3  Score=38.06  Aligned_cols=90  Identities=13%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ...++|+++|+|. |......++..+ .+|+++|.++.-.+.+++. +          +++  .+..+.+    ...|+|
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~G-a~Viv~d~~~~~~~~A~~~-G----------a~~--~~l~e~l----~~aDvV  333 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQG-ARVSVTEIDPINALQAMME-G----------FDV--VTVEEAI----GDADIV  333 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-T----------CEE--CCHHHHG----GGCSEE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-C----------CEE--ecHHHHH----hCCCEE
Confidence            4678999999974 333344444454 5899999999887777653 1          111  1333333    358999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +.-...       ..++..+.+     +.|+++|+++ |.+.
T Consensus       334 i~atgt-------~~~i~~~~l-----~~mk~ggilv-nvG~  362 (494)
T 3ce6_A          334 VTATGN-------KDIIMLEHI-----KAMKDHAILG-NIGH  362 (494)
T ss_dssp             EECSSS-------SCSBCHHHH-----HHSCTTCEEE-ECSS
T ss_pred             EECCCC-------HHHHHHHHH-----HhcCCCcEEE-EeCC
Confidence            976421       234444433     4578998875 6553

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=83.61  E-value=7.5  Score=34.13  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      ..+.||+.|+++|   .+++++++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+      +++. 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~  100 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAA-----GGEAESHACDLSHSDAIAAFATGV  100 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHH
Confidence            4577888887544   234444443  368999999998777665554432     3568888888642      2221 


Q ss_pred             --cCCceeEEEEeCCC
Q 019699          172 --RKESYDVIIGDLAD  185 (337)
Q Consensus       172 --~~~~yDvIi~D~~d  185 (337)
                        .-++.|++|..+..
T Consensus       101 ~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          101 LAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence              22579999998763

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=83.59  E-value=5.9  Score=36.39  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=58.3

Q ss_pred             CeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh--ccCCCC-CCCeEEEEccHHHHHhhcCCceeE
Q 019699          104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--NKEAFS-DPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~--~~~~~~-d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+|++||+|.=  .++..+.+. + .+|++++.+++.++..++....  ...... ..++.....|..+.+    ..+|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~   78 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   78 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCCE
Confidence            58999999853  234444443 2 5799999999887766554221  110000 001112344544434    35899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||+-.+.+.         ..+.++. +...|+++.+++.-
T Consensus        79 vi~~v~~~~---------~~~~~~~-l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           79 ILIVVPAIH---------HASIAAN-IASYISEGQLIILN  108 (359)
T ss_dssp             EEECSCGGG---------HHHHHHH-HGGGCCTTCEEEES
T ss_pred             EEEeCCchH---------HHHHHHH-HHHhCCCCCEEEEc
Confidence            999875321         2567777 67889887765543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=83.53  E-value=24  Score=32.31  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=56.3

Q ss_pred             CeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+|.+||+|.=+.  +..++......++..+|++++-++. +.+.-...  .+. .++++..+| .+-+    +.-|+||
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~--~~~-~~~~v~~~~-~~a~----~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT--PFA-HPVWVWAGS-YGDL----EGARAVV   72 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG--GGS-CCCEEEECC-GGGG----TTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH--hhc-CCeEEEECC-HHHh----CCCCEEE
Confidence            3799999974333  2333334445689999999876663 33321111  111 355666555 2222    4589999


Q ss_pred             EeCCCCCCCCCCc-C--CchHHHHHHHhc--cccCCCceEEEe
Q 019699          181 GDLADPIEGGPCY-K--LYTKSFYEFVVK--PRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~-~--L~t~ef~~~~~~--~~L~p~Gvlv~~  218 (337)
                      +-...|...+... .  ..+...++.+++  +..+|+|++++-
T Consensus        73 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  115 (310)
T 2xxj_A           73 LAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA  115 (310)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             ECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe
Confidence            9876554212100 0  112233333111  123899988764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.50  E-value=4.5  Score=35.18  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~~-  171 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...     .+++.++..|..+.      ++. 
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVAD-----GGTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4578888887654   244555554  368999999998776655544322     35788888887432      221 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|..+.
T Consensus        81 ~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1247999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=83.32  E-value=3.9  Score=36.48  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             CeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC-ceeEEE
Q 019699          104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~-~yDvIi  180 (337)
                      ++|.+||+|.  +.++..+.+.....+|+++|.+++.++.++++ +.     . +  . ...|..+.+    . ..|+|+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~-----~-~--~-~~~~~~~~~----~~~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI-----I-D--E-GTTSIAKVE----DFSPDFVM   67 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS-----C-S--E-EESCGGGGG----GTCCSEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CC-----c-c--c-ccCCHHHHh----cCCCCEEE
Confidence            4799999984  33445555432123799999999888777653 11     0 0  1 123332322    3 689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +-.+..         ...+.++. +...|+++.+++.
T Consensus        68 lavp~~---------~~~~v~~~-l~~~l~~~~iv~~   94 (281)
T 2g5c_A           68 LSSPVR---------TFREIAKK-LSYILSEDATVTD   94 (281)
T ss_dssp             ECSCHH---------HHHHHHHH-HHHHSCTTCEEEE
T ss_pred             EcCCHH---------HHHHHHHH-HHhhCCCCcEEEE
Confidence            887521         23466666 5677888876554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=82.99  E-value=1.1  Score=42.27  Aligned_cols=34  Identities=21%  Similarity=0.442  Sum_probs=26.5

Q ss_pred             CCeEEEEecchhHHH--HHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~  136 (337)
                      .|||++||+|.+++.  ..+.+..+..+|++||-++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            589999999988764  4466655557999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=82.97  E-value=6.3  Score=36.07  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCC-CCCeEEEEccHHHHHhhcCCcee
Q 019699          102 NPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFS-DPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       102 ~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~-d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+|++||+|.=  .++..+.+.  ..+|+++ .+++.++..++. +........ ..+++. ..|.. .+    ..+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~-~~----~~~D   88 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDPS-AV----QGAD   88 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCGG-GG----TTCS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCHH-Hc----CCCC
Confidence            4579999999843  334445443  3589999 999888777653 111100000 011221 23321 11    4699


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +||+-.+..         ...+.++. ++..|+++.+++.
T Consensus        89 ~vilavk~~---------~~~~~l~~-l~~~l~~~~~iv~  118 (318)
T 3hwr_A           89 LVLFCVKST---------DTQSAALA-MKPALAKSALVLS  118 (318)
T ss_dssp             EEEECCCGG---------GHHHHHHH-HTTTSCTTCEEEE
T ss_pred             EEEEEcccc---------cHHHHHHH-HHHhcCCCCEEEE
Confidence            999986521         24677888 7889998886654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=82.96  E-value=14  Score=34.18  Aligned_cols=112  Identities=13%  Similarity=0.213  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+..+|.+||+|.=+.  +..++...-..++..+|++++-++....-+.... .+. .++++..++ .+-+    ..-|
T Consensus         6 ~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~-~~~~i~~~~-~~a~----~~aD   78 (326)
T 2zqz_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL-PFT-SPKKIYSAE-YSDA----KDAD   78 (326)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS-CCCEEEECC-GGGG----GGCS
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH-Hhc-CCeEEEECC-HHHh----CCCC
Confidence            34557999999974333  2333333335689999999876654222121111 121 456666544 2222    3479


Q ss_pred             EEEEeCCCCCCCCCC-cCC--chHHHHHHHhc--cccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPC-YKL--YTKSFYEFVVK--PRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~-~~L--~t~ef~~~~~~--~~L~p~Gvlv~~  218 (337)
                      +||+-...|...+.. ..+  .+...++.++.  ...+|+|++++-
T Consensus        79 vVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  124 (326)
T 2zqz_A           79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA  124 (326)
T ss_dssp             EEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            999887654321110 011  12233333111  223799988764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=82.86  E-value=20  Score=32.54  Aligned_cols=76  Identities=25%  Similarity=0.285  Sum_probs=44.3

Q ss_pred             CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+|.+||+|.=+  ++..+++..-..+|+++|++++.++.....+. ...  +...++++...|. +-+    ...|+||
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~d~-~~~----~~aDvVi   74 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA--NLEAHGNIVINDW-AAL----ADADVVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG--GSSSCCEEEESCG-GGG----TTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh--hcCCCeEEEeCCH-HHh----CCCCEEE
Confidence            479999988533  34444443212589999999987755443222 110  1123455545663 322    4589999


Q ss_pred             EeCCCC
Q 019699          181 GDLADP  186 (337)
Q Consensus       181 ~D~~dp  186 (337)
                      +-...+
T Consensus        75 iav~~~   80 (309)
T 1hyh_A           75 STLGNI   80 (309)
T ss_dssp             ECCSCG
T ss_pred             EecCCc
Confidence            988654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=82.70  E-value=14  Score=33.21  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECCh--HHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDE--EVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~--~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~  170 (337)
                      +.+.||+.|+++|   .+++.+++.  ..+|.+++.+.  .-.+..++.....     ..++.++..|..+      .++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEEC-----GRKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHT-----TCCEEECCCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHc-----CCcEEEEEecCCCHHHHHHHHH
Confidence            4578888887654   234555554  36798888873  2333333332221     3567777777642      222


Q ss_pred             h---cCCceeEEEEeCCC
Q 019699          171 S---RKESYDVIIGDLAD  185 (337)
Q Consensus       171 ~---~~~~yDvIi~D~~d  185 (337)
                      .   .-++.|++|..+..
T Consensus       121 ~~~~~~g~iD~lv~nAg~  138 (294)
T 3r3s_A          121 KAREALGGLDILALVAGK  138 (294)
T ss_dssp             HHHHHHTCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            1   22579999998863

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=82.63  E-value=4.7  Score=36.79  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             CCCCeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-HHhhcCCcee
Q 019699          101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-~l~~~~~~yD  177 (337)
                      ....+||++|  +|-|.++..+++..+. +|+++.-+++ .+.++++- ..         .++..+-.+ +.+ .-+.+|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~-~~~~~~lG-a~---------~~i~~~~~~~~~~-~~~g~D  217 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRN-HAFLKALG-AE---------QCINYHEEDFLLA-ISTPVD  217 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHH-HHHHHHHT-CS---------EEEETTTSCHHHH-CCSCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccch-HHHHHHcC-CC---------EEEeCCCcchhhh-hccCCC
Confidence            4568999997  4567778888887754 7888875444 77777642 11         112111111 222 225799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +||--..     +       ..+ +. +.+.|+++|.++.-
T Consensus       218 ~v~d~~g-----~-------~~~-~~-~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          218 AVIDLVG-----G-------DVG-IQ-SIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEESSC-----H-------HHH-HH-HGGGEEEEEEEEEC
T ss_pred             EEEECCC-----c-------HHH-HH-HHHhccCCCEEEEe
Confidence            9884331     1       122 44 57899999998864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=82.27  E-value=5.8  Score=35.86  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~~-  171 (337)
                      +.+.||+.|+++|   .+++++++.  ..+|.+++.+++-++.+.+.+...     ..++.++..|..+.      ++. 
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQ-----GFDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            5678999888654   244555554  368999999998877666555432     35788888886432      221 


Q ss_pred             --cCCceeEEEEeCCC
Q 019699          172 --RKESYDVIIGDLAD  185 (337)
Q Consensus       172 --~~~~yDvIi~D~~d  185 (337)
                        ..++.|++|.++..
T Consensus       103 ~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHSSCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence              12479999998863

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.26  E-value=4.8  Score=35.35  Aligned_cols=77  Identities=23%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             CCCeEEEEec-ch--h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh
Q 019699          102 NPKTIFIMGG-GE--G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES  171 (337)
Q Consensus       102 ~p~~VLiIG~-G~--G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~  171 (337)
                      +.+.||+.|+ |.  | .+++.++++  ..+|.+++.+++-.+...+.+...    ...++.++..|..+      +++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADL----GLGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhc----CCCceEEEEeCCCCHHHHHHHHHH
Confidence            4678999998 43  3 345666664  368999999988776665554321    23688999888743      2222


Q ss_pred             ---cCCceeEEEEeCC
Q 019699          172 ---RKESYDVIIGDLA  184 (337)
Q Consensus       172 ---~~~~yDvIi~D~~  184 (337)
                         .-++.|++|..+.
T Consensus        95 ~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCcEEEECCC
Confidence               1257899999886

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.25  E-value=15  Score=33.33  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             CCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yD  177 (337)
                      ...++||++|+|+-+  ++..+++ .+..+|+++..+++-.+...+.+....   .+-++.... .|..+.+    ..+|
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~-~G~~~v~i~~R~~~~a~~la~~~~~~~---~~~~i~~~~~~~l~~~l----~~~D  196 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQALADVINNAV---GREAVVGVDARGIEDVI----AAAD  196 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSSHHHHHHHHHHHHHHH---TSCCEEEECSTTHHHHH----HHSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhhc---CCceEEEcCHHHHHHHH----hcCC
Confidence            467899999986322  2333444 456689999999876654333332110   012233322 2333333    3589


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +||.-.+
T Consensus       197 iVInaTp  203 (283)
T 3jyo_A          197 GVVNATP  203 (283)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9997765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.12  E-value=0.22  Score=58.57  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=0.0

Q ss_pred             eEEEEecchhHHHHHHHhcCC-----CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--------
Q 019699          105 TIFIMGGGEGSTAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--------  171 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~-----~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--------  171 (337)
                      +||+||+|+|.+...+++...     ..+.+..|+++...+.+++.|....                  +..        
T Consensus      1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d------------------i~~~~~d~~~~ 1304 (2512)
T 2vz8_A         1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH------------------VTQGQWDPANP 1304 (2512)
T ss_dssp             EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT------------------EEEECCCSSCC
T ss_pred             eEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc------------------ccccccccccc


Q ss_pred             ---cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       172 ---~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                         ....||+||....-+.....      .+.+++ +++.|+|||.+++
T Consensus      1305 ~~~~~~~ydlvia~~vl~~t~~~------~~~l~~-~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1305 APGSLGKADLLVCNCALATLGDP------AVAVGN-MAATLKEGGFLLL 1346 (2512)
T ss_dssp             CC-----CCEEEEECC---------------------------CCEEEE
T ss_pred             ccCCCCceeEEEEcccccccccH------HHHHHH-HHHhcCCCcEEEE

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.09  E-value=19  Score=32.62  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             cCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC
Q 019699           75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA  152 (337)
Q Consensus        75 DG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~  152 (337)
                      ||.+....-|...+.+.|..  .......++||++|+|+-+  ++..+++ .+..+|+++..+++-.+...+.+...   
T Consensus       100 ~g~l~G~NTD~~G~~~~L~~--~~~~l~~k~vlvlGaGg~g~aia~~L~~-~G~~~v~v~~R~~~~a~~la~~~~~~---  173 (281)
T 3o8q_A          100 DGEILGDNTDGEGLVQDLLA--QQVLLKGATILLIGAGGAARGVLKPLLD-QQPASITVTNRTFAKAEQLAELVAAY---  173 (281)
T ss_dssp             TSCEEEECCHHHHHHHHHHH--TTCCCTTCEEEEECCSHHHHHHHHHHHT-TCCSEEEEEESSHHHHHHHHHHHGGG---
T ss_pred             CCcEEEEecHHHHHHHHHHH--hCCCccCCEEEEECchHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhcc---
Confidence            44444433443344444432  1122457899999986321  2333333 45569999999987654443333321   


Q ss_pred             CCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          153 FSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       153 ~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                         ..++...-      .+....+|+||.-.+.+
T Consensus       174 ---~~~~~~~~------~~l~~~aDiIInaTp~g  198 (281)
T 3o8q_A          174 ---GEVKAQAF------EQLKQSYDVIINSTSAS  198 (281)
T ss_dssp             ---SCEEEEEG------GGCCSCEEEEEECSCCC
T ss_pred             ---CCeeEeeH------HHhcCCCCEEEEcCcCC
Confidence               12343321      11226799999877643

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=82.01  E-value=2.2  Score=43.26  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=24.9

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ..+||+||+|+ |+.....+...++.+++.||-|.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            57999999984 33333334446899999999986

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=81.98  E-value=13  Score=33.92  Aligned_cols=71  Identities=24%  Similarity=0.384  Sum_probs=43.0

Q ss_pred             CCCCeEEEEecch-hH-HHHHHH-hcCCCcEE-EEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          101 PNPKTIFIMGGGE-GS-TAREIL-RHKTVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~-~~~~ll-~~~~~~~v-~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      .++.+|.+||+|. |. .+..+. +.+ ..++ .++|.+++-.+...+.++.       +   ....|..+.+..  ...
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~-~~~~vav~d~~~~~~~~~a~~~g~-------~---~~~~~~~~~l~~--~~~   72 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQ-GVKLVAACALDSNQLEWAKNELGV-------E---TTYTNYKDMIDT--ENI   72 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCS-SEEEEEEECSCHHHHHHHHHTTCC-------S---EEESCHHHHHTT--SCC
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHhCC-------C---cccCCHHHHhcC--CCC
Confidence            3456999999984 32 344444 343 3454 4679999877544332221       1   234676666653  368


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |+|++-.+
T Consensus        73 D~V~i~tp   80 (346)
T 3cea_A           73 DAIFIVAP   80 (346)
T ss_dssp             SEEEECSC
T ss_pred             CEEEEeCC
Confidence            99998765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=81.90  E-value=2.1  Score=39.12  Aligned_cols=90  Identities=24%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             eEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEEE
Q 019699          105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi~  181 (337)
                      +||++|+  |.|.++..++++.+. +|++++.+++=.+.++++ +..         .++..+-..+++. ..+.+|+|| 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~d~v~-  216 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL-GAN---------RILSRDEFAESRPLEKQLWAGAI-  216 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH-TCS---------EEEEGGGSSCCCSSCCCCEEEEE-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-CCC---------EEEecCCHHHHHhhcCCCccEEE-
Confidence            5999995  567788888888764 899999999989998874 211         1111110111222 235799876 


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |..     +.       +.++. +.+.|+++|.++.-.
T Consensus       217 d~~-----g~-------~~~~~-~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          217 DTV-----GD-------KVLAK-VLAQMNYGGCVAACG  241 (324)
T ss_dssp             ESS-----CH-------HHHHH-HHHTEEEEEEEEECC
T ss_pred             ECC-----Cc-------HHHHH-HHHHHhcCCEEEEEe
Confidence            543     21       24455 567999999987643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=81.78  E-value=8.4  Score=34.01  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             CCCeEEEEecchhHHHH----HHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh-
Q 019699          102 NPKTIFIMGGGEGSTAR----EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~----~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~-  170 (337)
                      ..++||+.|++ |++++    .+++.  ..+|++++.++.-.+...+.+...     ..++.++..|..+      .++ 
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dl~~~~~v~~~~~~  101 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKK  101 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEEcCHHHHHHHHHHHHhc-----CCeEEEEEeeCCCHHHHHHHHHH
Confidence            45788888875 44444    44443  368999999987665544433321     3578888888642      222 


Q ss_pred             --hcCCceeEEEEeCC
Q 019699          171 --SRKESYDVIIGDLA  184 (337)
Q Consensus       171 --~~~~~yDvIi~D~~  184 (337)
                        +.-++.|+||..+.
T Consensus       102 ~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A          102 VKAEIGDVSILVNNAG  117 (272)
T ss_dssp             HHHHTCCCSEEEECCC
T ss_pred             HHHHCCCCcEEEECCC
Confidence              12357999999885

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.62  E-value=11  Score=33.10  Aligned_cols=76  Identities=24%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+.+.+.+...     ..++.++..|..+      .++. 
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   77 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKE--GARVVITGRTKEKLEEAKLEIEQF-----PGQILTVQMDVRNTDDIQKMIEQI   77 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCS-----TTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            3567888887644   234555554  368999999998777666554321     3578888888642      2221 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|..+.
T Consensus        78 ~~~~g~id~lv~nAg   92 (257)
T 3imf_A           78 DEKFGRIDILINNAA   92 (257)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1257899999876

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=81.61  E-value=12  Score=34.12  Aligned_cols=104  Identities=14%  Similarity=0.206  Sum_probs=51.3

Q ss_pred             eEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      +|.+||+|.=+.  +..++......+|+++|+|++.++.....+.... .+. +..++..+|. +-+    +.-|+||+-
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~-~~~-~~~~i~~~~~-~a~----~~aDvVIi~   74 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAA-PVS-HGTRVWHGGH-SEL----ADAQVVILT   74 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSC-CTT-SCCEEEEECG-GGG----TTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhh-hhc-CCeEEEECCH-HHh----CCCCEEEEc
Confidence            799999985433  3333333223489999999986653222221110 111 3445544452 222    457999998


Q ss_pred             CCCCCCCCCC-cCCc--h----HHHHHHHhccccCCCceEEE
Q 019699          183 LADPIEGGPC-YKLY--T----KSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       183 ~~dp~~~~p~-~~L~--t----~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ...|...+.. ..+.  +    ++..+. +.+. .|++++++
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~~~vi~  114 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQ-ITRA-APDAVLLV  114 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHH-HHHH-CSSSEEEE
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHH-HHHh-CCCeEEEE
Confidence            7544311110 0111  1    345555 4444 69998765

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.57  E-value=5.6  Score=33.55  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             eEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          105 TIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       105 ~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +||+.|+. |.++    +++++.  ..+|+++..++.-.+..           ..++++++.+|..+.-...-+..|+||
T Consensus         2 kilVtGat-G~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~d~vi   67 (224)
T 3h2s_A            2 KIAVLGAT-GRAGSAIVAEARRR--GHEVLAVVRDPQKAADR-----------LGATVATLVKEPLVLTEADLDSVDAVV   67 (224)
T ss_dssp             EEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHH-----------TCTTSEEEECCGGGCCHHHHTTCSEEE
T ss_pred             EEEEEcCC-CHHHHHHHHHHHHC--CCEEEEEEecccccccc-----------cCCCceEEecccccccHhhcccCCEEE
Confidence            68999873 4444    444443  36899999988654321           135788999987543112124689999


Q ss_pred             EeCCC
Q 019699          181 GDLAD  185 (337)
Q Consensus       181 ~D~~d  185 (337)
                      ..+..
T Consensus        68 ~~ag~   72 (224)
T 3h2s_A           68 DALSV   72 (224)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            88764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=81.55  E-value=5.3  Score=35.90  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=62.8

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cC-CCCC-------CCeEEEEccHH
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KE-AFSD-------PRLELVINDAR  166 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~-~~~d-------~rv~v~~~D~~  166 (337)
                      .++|.+||+|.  .+++..+++.  ..+|+++|.+++.++.+++.+...      .+ .+..       .+++. ..|..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            46899999984  3445555554  358999999999988877653110      00 0000       12232 34433


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +.+    ...|+||.-.+...       -...+.++. +...++++.+++.++.
T Consensus        81 ~~~----~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~il~s~tS  122 (283)
T 4e12_A           81 QAV----KDADLVIEAVPESL-------DLKRDIYTK-LGELAPAKTIFATNSS  122 (283)
T ss_dssp             HHT----TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred             HHh----ccCCEEEEeccCcH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence            333    45899998875321       123567777 6888999888876754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=81.51  E-value=4.8  Score=39.49  Aligned_cols=74  Identities=20%  Similarity=0.402  Sum_probs=45.1

Q ss_pred             CCeEEEEecchh-HH--HHHHHhc--C-CCcEEEEEECChHHHHHHHh----hhhhccCCCCCCCeEEEE-ccHHHHHhh
Q 019699          103 PKTIFIMGGGEG-ST--AREILRH--K-TVEKVVMCDIDEEVVEFCKS----YLVVNKEAFSDPRLELVI-NDARAELES  171 (337)
Q Consensus       103 p~~VLiIG~G~G-~~--~~~ll~~--~-~~~~v~~VEid~~vi~~a~~----~f~~~~~~~~d~rv~v~~-~D~~~~l~~  171 (337)
                      ..+|.+||+|++ +.  +..+++.  . +..+|..+|+|++.++....    +++..     ....++.. .|-.+-++ 
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~-----~~~~~I~~t~D~~eal~-  101 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK-----APDIEFAATTDPEEAFT-  101 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH-----CTTSEEEEESCHHHHHS-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-----CCCCEEEEECCHHHHHc-
Confidence            358999999986 32  3345554  1 24689999999987665433    22221     12344443 46544443 


Q ss_pred             cCCceeEEEEeCCC
Q 019699          172 RKESYDVIIGDLAD  185 (337)
Q Consensus       172 ~~~~yDvIi~D~~d  185 (337)
                         .-|+||+-...
T Consensus       102 ---~AD~VViaag~  112 (472)
T 1u8x_X          102 ---DVDFVMAHIRV  112 (472)
T ss_dssp             ---SCSEEEECCCT
T ss_pred             ---CCCEEEEcCCC
Confidence               47999988764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=81.48  E-value=3  Score=42.17  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID  135 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid  135 (337)
                      ..+||+||+|+ |+.....+...++.+++.||-|
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            57999999985 3333333444679999999988

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.32  E-value=5.6  Score=34.97  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=49.7

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~~-  171 (337)
                      +.+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+.      ++. 
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQA-----GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4578888887654   234555554  367999999998776665554332     36788888876432      221 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        84 ~~~~g~id~lv~nAg   98 (256)
T 3gaf_A           84 LDQFGKITVLVNNAG   98 (256)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1257999999885

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=81.18  E-value=10  Score=34.31  Aligned_cols=90  Identities=9%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yDv  178 (337)
                      ..+++|++||+|.=+ .....++..+ .+|+++|.+++-.+.++++           .++.+ ..+..+.    -...|+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d~~~~~~~~~~~~-----------g~~~~~~~~l~~~----l~~aDv  218 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALG-ANVKVGARSSAHLARITEM-----------GLVPFHTDELKEH----VKDIDI  218 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-----------TCEEEEGGGHHHH----STTCSE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC-----------CCeEEchhhHHHH----hhCCCE
Confidence            357899999987422 2222333344 5899999998755544331           12222 1232233    256899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+.-.+.        ++++.+.     .+.++++++++ |..
T Consensus       219 Vi~~~p~--------~~i~~~~-----~~~mk~g~~li-n~a  246 (300)
T 2rir_A          219 CINTIPS--------MILNQTV-----LSSMTPKTLIL-DLA  246 (300)
T ss_dssp             EEECCSS--------CCBCHHH-----HTTSCTTCEEE-ECS
T ss_pred             EEECCCh--------hhhCHHH-----HHhCCCCCEEE-EEe
Confidence            9988753        3444432     24578877664 653

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=81.05  E-value=30  Score=35.70  Aligned_cols=45  Identities=13%  Similarity=0.062  Sum_probs=33.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcC-----CCcEEEEEECChHHHHHHHhhhh
Q 019699          103 PKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~-----~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      ..+|++|-+|.|++..-+.+..     ...-+.+||+|+..++.-+.+++
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            3579999999999876554421     12457799999999999888764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=81.03  E-value=23  Score=32.84  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             CCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yDv  178 (337)
                      .+.+|.+||+|.-+  ++..++...-..+++.+|++++.++.-..-+... ..+. ...+++ .+|..    . -...|+
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~-~~~~-~~~~i~~~~d~~----~-~~~aDi   90 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHG-SLFL-KTPKIVSSKDYS----V-TANSKL   90 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGC-SCCEEEECSSGG----G-GTTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhh-hhcc-CCCeEEEcCCHH----H-hCCCCE
Confidence            45799999998433  3445555443458999999987655422212110 0111 122333 44532    1 256899


Q ss_pred             EEEeCCCCCCCCCC-cCCch------HHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~t------~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||+-+..|...+.. ..|+.      +++-+. +.+ .+|++++++-+
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~-~~p~a~vlvvt  136 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPN-VVK-YSPQCKLLIVS  136 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH-HHH-HCTTCEEEECS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence            99876555421211 12332      223344 344 38999887544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=80.96  E-value=3.4  Score=35.82  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCce
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY  176 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~y  176 (337)
                      ..++|+++|+|  .+++.+++..  ... |+++|.|++.++.++            ..++++.+|+.  +.++.. -...
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------~~~~~i~gd~~~~~~l~~a~i~~a   72 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGA   72 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------cCCeEEEcCCCCHHHHHhcCcchh
Confidence            34689999986  3444444321  124 999999998776554            13678888885  445443 3679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      |+|++-..+..     ..+    .... ..+.+.++..+++....
T Consensus        73 d~vi~~~~~d~-----~n~----~~~~-~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           73 RAVIVDLESDS-----ETI----HCIL-GIRKIDESVRIIAEAER  107 (234)
T ss_dssp             SEEEECCSCHH-----HHH----HHHH-HHHHHCSSSEEEEECSS
T ss_pred             cEEEEcCCCcH-----HHH----HHHH-HHHHHCCCCeEEEEECC
Confidence            99998764321     111    1122 34567777666666543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=80.89  E-value=19  Score=30.96  Aligned_cols=75  Identities=15%  Similarity=0.301  Sum_probs=46.4

Q ss_pred             CCCeEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hhh
Q 019699          102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~~  171 (337)
                      ..++||+.|++ |+++    +++++.  ..+|.+++.++.-.+...+.+...     ..+++++..|..+.      ++.
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~   83 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRME-----GHDVSSVVMDVTNTESVQNAVRS   83 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHH
Confidence            45788888875 4444    444443  368999999987655444333221     35788888886432      221


Q ss_pred             ---cCCceeEEEEeCC
Q 019699          172 ---RKESYDVIIGDLA  184 (337)
Q Consensus       172 ---~~~~yDvIi~D~~  184 (337)
                         ..++.|+||..+.
T Consensus        84 ~~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           84 VHEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence               1246899999875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=80.84  E-value=6.8  Score=36.76  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             hhhHHHHHHhHHHhcC--------CCCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECCh
Q 019699           85 EFIYHESLVHPALLHH--------PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus        85 e~~Y~e~l~~~~l~~~--------~~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~  136 (337)
                      ...|.+.+....+...        -...+||+||+|+- +.....+...++.+++.||-|.
T Consensus        92 ~~rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A           92 NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TSTTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            3467776543332211        13579999999743 3233333335789999999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.72  E-value=7.9  Score=34.49  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=48.9

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+...+.+...     ..++.++..|..+      .++. 
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAA-----GHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4578888887654   244555554  368999999998776655544321     3578888888642      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        96 ~~~~g~id~lv~nAg  110 (279)
T 3sju_A           96 VERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHCSCCEEEECCC
T ss_pred             HHHcCCCcEEEECCC
Confidence              1257899999886

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=80.68  E-value=20  Score=31.77  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECC----------------hHHHHHHHhhhhhccCCCCCCCeEEEE
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDID----------------EEVVEFCKSYLVVNKEAFSDPRLELVI  162 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid----------------~~vi~~a~~~f~~~~~~~~d~rv~v~~  162 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+                ++-++...+.+..     ...++.++.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~   82 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG-----HNRRIVTAE   82 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT-----TTCCEEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh-----cCCceEEEE
Confidence            5678999988755   345555554  4689999987                4444443333322     135788888


Q ss_pred             ccHHH------HHhh---cCCceeEEEEeCCC
Q 019699          163 NDARA------ELES---RKESYDVIIGDLAD  185 (337)
Q Consensus       163 ~D~~~------~l~~---~~~~yDvIi~D~~d  185 (337)
                      .|..+      +++.   .-++.|++|.++..
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            88642      2221   22579999998863

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=80.67  E-value=6.7  Score=36.18  Aligned_cols=78  Identities=18%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             CCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ++.+|.+||+|.=+.  +..++......+|..+|+|++.++. +... .... .+ ..++++..+| .+-+    ..-|+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl-~~~~-~~-~~~~~i~~~~-~~a~----~~aDv   77 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI-NHGL-PF-MGQMSLYAGD-YSDV----KDCDV   77 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH-TTSC-CC-TTCEEEC--C-GGGG----TTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH-HHhH-Hh-cCCeEEEECC-HHHh----CCCCE
Confidence            457899999974333  2333333334589999999876553 2221 1110 11 1355665544 2212    45899


Q ss_pred             EEEeCCCCC
Q 019699          179 IIGDLADPI  187 (337)
Q Consensus       179 Ii~D~~dp~  187 (337)
                      ||+-...|.
T Consensus        78 Vii~~g~p~   86 (318)
T 1y6j_A           78 IVVTAGANR   86 (318)
T ss_dssp             EEECCCC--
T ss_pred             EEEcCCCCC
Confidence            999876554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=80.63  E-value=2.8  Score=38.90  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=54.6

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ....+||++|+  |.|.++..+++..+..+|.++. +++-.+.++  +...      .-+. ...|..+.+++ .++.+|
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~------~~~~-~~~~~~~~~~~~~~~g~D  210 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVT------HLFD-RNADYVQEVKRISAEGVD  210 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSS------EEEE-TTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCc------EEEc-CCccHHHHHHHhcCCCce
Confidence            45689999997  3566777777765557888887 444445554  3221      0011 12334444433 346799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||-....     +  .      ++. +.+.|+++|.++.-.
T Consensus       211 vv~d~~g~-----~--~------~~~-~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          211 IVLDCLCG-----D--N------TGK-GLSLLKPLGTYILYG  238 (349)
T ss_dssp             EEEEECC---------------------CTTEEEEEEEEEEC
T ss_pred             EEEECCCc-----h--h------HHH-HHHHhhcCCEEEEEC
Confidence            99854421     1  1      123 468999999988653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.36  E-value=5.5  Score=33.43  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             eEEEEecchhHH----HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          105 TIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       105 ~VLiIG~G~G~~----~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +||+.|+. |.+    ++++++.  ..+|+++..++.-.+..           . ++++++.+|..+.-.+.-...|+||
T Consensus         2 kvlVtGat-G~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-----------~-~~~~~~~~D~~d~~~~~~~~~d~vi   66 (221)
T 3ew7_A            2 KIGIIGAT-GRAGSRILEEAKNR--GHEVTAIVRNAGKITQT-----------H-KDINILQKDIFDLTLSDLSDQNVVV   66 (221)
T ss_dssp             EEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCSHHHHHH-----------C-SSSEEEECCGGGCCHHHHTTCSEEE
T ss_pred             eEEEEcCC-chhHHHHHHHHHhC--CCEEEEEEcCchhhhhc-----------c-CCCeEEeccccChhhhhhcCCCEEE
Confidence            68999863 333    3444443  36899999987643321           1 4678888887543111124689999


Q ss_pred             EeCCC
Q 019699          181 GDLAD  185 (337)
Q Consensus       181 ~D~~d  185 (337)
                      ..+..
T Consensus        67 ~~ag~   71 (221)
T 3ew7_A           67 DAYGI   71 (221)
T ss_dssp             ECCCS
T ss_pred             ECCcC
Confidence            88764

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=80.35  E-value=22  Score=33.23  Aligned_cols=114  Identities=20%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC
Q 019699           59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID  135 (337)
Q Consensus        59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid  135 (337)
                      .+.+++... |.. ..+||...+..+..  ..-.+... .+..++.+++++||+|.=+-  ++.++...+..+|.+++.+
T Consensus        88 ~~~L~d~~t-G~p~a~~d~~~lT~~RTa--a~s~laa~-~la~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~  163 (350)
T 1x7d_A           88 FGVLADVDS-GYPVLLSELTIATALRTA--ATSLMAAQ-ALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD  163 (350)
T ss_dssp             EEEEEETTT-CCEEEEEECHHHHHHHHH--HHHHHHHH-HHSCTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS
T ss_pred             EEEEEECCC-CCEEEEEcCCEEEeehhh--HHHHHHHH-HhccccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            455556544 543 45677654442221  01112111 22346778999999985433  3444444567899999999


Q ss_pred             hHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCceeEEEEeCCCC
Q 019699          136 EEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       136 ~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      ++-.+...+.+...      +.+++. ..|..+.++    ..|+|++-.+++
T Consensus       164 ~~~a~~la~~~~~~------~g~~~~~~~~~~eav~----~aDiVi~aTps~  205 (350)
T 1x7d_A          164 PLATAKLIANLKEY------SGLTIRRASSVAEAVK----GVDIITTVTADK  205 (350)
T ss_dssp             HHHHHHHHHHHTTC------TTCEEEECSSHHHHHT----TCSEEEECCCCS
T ss_pred             HHHHHHHHHHHHhc------cCceEEEeCCHHHHHh----cCCEEEEeccCC
Confidence            88776655544211      133332 355555553    479999887753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=80.32  E-value=8  Score=35.30  Aligned_cols=79  Identities=22%  Similarity=0.342  Sum_probs=51.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+.+.+.+....   .++++.++..|..+      .++  
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   81 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADEV   81 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHHH
Confidence            4578999988655   244555554  3689999999987766655443221   13478888888642      222  


Q ss_pred             -hcCCceeEEEEeCCC
Q 019699          171 -SRKESYDVIIGDLAD  185 (337)
Q Consensus       171 -~~~~~yDvIi~D~~d  185 (337)
                       +.-++.|++|.++..
T Consensus        82 ~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           82 EARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHTCCEEEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence             223578999999863

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=80.30  E-value=11  Score=35.81  Aligned_cols=98  Identities=20%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHH-HHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yD  177 (337)
                      ...++|++||+|. |......++..+..+|++++.+++-. ++++++ +.          +++ ..|..+.+    ..+|
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~l~~~l----~~aD  229 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-GG----------EAVRFDELVDHL----ARSD  229 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-TC----------EECCGGGHHHHH----HTCS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-CC----------ceecHHhHHHHh----cCCC
Confidence            4678999999964 33333333434556899999998765 566554 11          111 12333333    3589


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhcccc--C-CCceEEEeCCCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL--N-PEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L--~-p~Gvlv~~~~~p  222 (337)
                      +||.-.+.+      ..+.+.+.++.   ..|  + .+++++++...|
T Consensus       230 vVi~at~~~------~~~~~~~~l~~---~~lk~r~~~~~v~vdia~P  268 (404)
T 1gpj_A          230 VVVSATAAP------HPVIHVDDVRE---ALRKRDRRSPILIIDIANP  268 (404)
T ss_dssp             EEEECCSSS------SCCBCHHHHHH---HHHHCSSCCCEEEEECCSS
T ss_pred             EEEEccCCC------CceecHHHHHH---HHHhccCCCCEEEEEccCC
Confidence            999876432      23344444432   023  2 356777776544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=80.30  E-value=6  Score=38.56  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=46.0

Q ss_pred             CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhcC-CceeE
Q 019699          103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRK-ESYDV  178 (337)
Q Consensus       103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~~-~~yDv  178 (337)
                      ..+|+++|+|. |......+.. ....|++||.|++.++.+.+.+          .+.++.|||.  +.|++.+ ++.|+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~-~~~~v~vId~d~~~~~~~~~~~----------~~~~i~Gd~~~~~~L~~Agi~~ad~   71 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVG-ENNDITIVDKDGDRLRELQDKY----------DLRVVNGHASHPDVLHEAGAQDADM   71 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCS-TTEEEEEEESCHHHHHHHHHHS----------SCEEEESCTTCHHHHHHHTTTTCSE
T ss_pred             cCEEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHhc----------CcEEEEEcCCCHHHHHhcCCCcCCE
Confidence            34899999984 2222222222 2468999999999998766543          2567889985  3465543 67888


Q ss_pred             EEEeC
Q 019699          179 IIGDL  183 (337)
Q Consensus       179 Ii~D~  183 (337)
                      ++.-.
T Consensus        72 ~ia~t   76 (461)
T 4g65_A           72 LVAVT   76 (461)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            87643

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=80.28  E-value=13  Score=36.32  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=61.0

Q ss_pred             CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhh--ccCCCCC-------CCeEEEEccHHHHHh
Q 019699          103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVV--NKEAFSD-------PRLELVINDARAELE  170 (337)
Q Consensus       103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~--~~~~~~d-------~rv~v~~~D~~~~l~  170 (337)
                      .++|.+||+|.  ++++..+++.  .-+|+++|++++- .+..++.+..  ..+.+..       .++++. .|. +-  
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl-~a--  127 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF-HK--  127 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG-GG--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH-HH--
Confidence            37899999994  5566666664  3689999999981 1111112210  1111110       244432 332 11  


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                        -...|+||.-.++.       .-..+++|+. +...++|+-+++.|++
T Consensus       128 --l~~aDlVIeAVpe~-------~~vk~~v~~~-l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          128 --LSNCDLIVESVIED-------MKLKKELFAN-LENICKSTCIFGTNTS  167 (460)
T ss_dssp             --CTTCSEEEECCCSC-------HHHHHHHHHH-HHTTSCTTCEEEECCS
T ss_pred             --HccCCEEEEcCCCC-------HHHHHHHHHH-HHhhCCCCCEEEecCC
Confidence              24589999987632       1123577888 7889999999988864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=80.20  E-value=20  Score=32.14  Aligned_cols=76  Identities=18%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECC------------hHHHHHHHhhhhhccCCCCCCCeEEEEccHH
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDID------------EEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid------------~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~  166 (337)
                      ..+.||+.|++.|   .+++.+++.  ..+|.+++.+            ++-++...+.+...     ..++.++..|..
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~   99 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLARE--GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-----GRRIIASQVDVR   99 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-----TCCEEEEECCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEecccccccccccccCHHHHHHHHHHHHhc-----CCceEEEECCCC
Confidence            4678888888655   244555554  4689999987            44444333333221     357888888864


Q ss_pred             H------HHhh---cCCceeEEEEeCC
Q 019699          167 A------ELES---RKESYDVIIGDLA  184 (337)
Q Consensus       167 ~------~l~~---~~~~yDvIi~D~~  184 (337)
                      +      +++.   .-++.|++|.++.
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            3      2221   2257999999876

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.18  E-value=9.6  Score=34.01  Aligned_cols=72  Identities=25%  Similarity=0.301  Sum_probs=48.4

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhhc
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESR  172 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~~  172 (337)
                      ..+.||+.|+++|   .+++.++++  ..+|.+++.++.-.+.+.+.+        ..+++++..|..+      +++..
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~d~~~v~~~~~~~   84 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARR--GATVIMAVRDTRKGEAAARTM--------AGQVEVRELDLQDLSSVRRFADGV   84 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHTTS--------SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh--------cCCeeEEEcCCCCHHHHHHHHHhc
Confidence            4578888887644   234455554  368999999988776655433        2568888888642      33333


Q ss_pred             CCceeEEEEeCC
Q 019699          173 KESYDVIIGDLA  184 (337)
Q Consensus       173 ~~~yDvIi~D~~  184 (337)
                       ++.|++|..+.
T Consensus        85 -~~iD~lv~nAg   95 (291)
T 3rd5_A           85 -SGADVLINNAG   95 (291)
T ss_dssp             -CCEEEEEECCC
T ss_pred             -CCCCEEEECCc
Confidence             57899999875

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=80.14  E-value=1.7  Score=41.66  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             CccccccCChhhHHHHHHhHH-----HhcCCCCCeEEEEecchhHHHHHHHhc-------CCCcEEEEEECChHHHHHHH
Q 019699           76 GKLQSAEVDEFIYHESLVHPA-----LLHHPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCK  143 (337)
Q Consensus        76 G~~q~~~~de~~Y~e~l~~~~-----l~~~~~p~~VLiIG~G~G~~~~~ll~~-------~~~~~v~~VEid~~vi~~a~  143 (337)
                      |...++..-...|-|++..--     .+..|.+-+++++|.|.|.++.-+++.       +...++.+||++|...+.-+
T Consensus        49 GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           49 GDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             --CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             CCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            444443222246677665321     123456678999999999998877753       13458999999999988777


Q ss_pred             hhh
Q 019699          144 SYL  146 (337)
Q Consensus       144 ~~f  146 (337)
                      +.+
T Consensus       129 ~~L  131 (387)
T 1zkd_A          129 TLL  131 (387)
T ss_dssp             HHS
T ss_pred             HHh
Confidence            655

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=80.13  E-value=16  Score=32.32  Aligned_cols=79  Identities=11%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      ..+.||+.|+++|   .+++.+++.  ..+|.+++.+++-.+.+.+.+....  -...++.++..|..+      .++. 
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAA--GASVMIVGRNPDKLAGAVQELEALG--ANGGAIRYEPTDITNEDETARAVDAV   85 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTC--CSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            4678898888654   244555554  3689999999987766555443211  112378888888643      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|..+.
T Consensus        86 ~~~~g~id~lv~nAg  100 (281)
T 3svt_A           86 TAWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1257899999886

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=80.07  E-value=8.5  Score=34.64  Aligned_cols=75  Identities=9%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             CCCeEEEEecchh-----HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh
Q 019699          102 NPKTIFIMGGGEG-----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G-----~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~  170 (337)
                      +.+.||+.|+++|     .+++.+++.  ..+|.+++.++...+.+++.....      +++.++..|..+      +++
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEEL------GAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHH------TCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc------CCceEEECCCCCHHHHHHHHH
Confidence            4678999997643     345556554  367999999976655555433221      357777777632      222


Q ss_pred             ---hcCCceeEEEEeCC
Q 019699          171 ---SRKESYDVIIGDLA  184 (337)
Q Consensus       171 ---~~~~~yDvIi~D~~  184 (337)
                         +.-++.|++|.++.
T Consensus       102 ~~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             HHHHHTSCCSEEEECCC
T ss_pred             HHHHhcCCCCEEEECCc
Confidence               22357999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=80.02  E-value=8.6  Score=35.54  Aligned_cols=34  Identities=12%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             CCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECC
Q 019699          101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID  135 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid  135 (337)
                      ...++||++|+|+-+  ++..+++ .+..+|+++..+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~-~G~~~v~v~nRt  181 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAI-EGIKEIKLFNRK  181 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEECS
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHH-cCCCEEEEEECC
Confidence            467899999986332  2333444 466799999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	1e-86
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	3e-81
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	1e-78
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	8e-77
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	2e-72
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	1e-69
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	4e-66

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  261 bits (667), Expect = 1e-86
 Identities = 122/307 (39%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           ++ E +         +  ++ +G+T +QD  L ++K FGK L++D  +QS E DE+IYHE
Sbjct: 6   YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
           +LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE  K ++   +
Sbjct: 66  TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125

Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
           + AF DPR  LVI+DARA LE  +E YDV+I DL DP+ E  P   LYT  FY  +VK  
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAH 184

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS- 267
           LNP G+   Q G   + +H  V   ++ T+R+ F+YV  Y  HIP F   +G+++ASD+ 
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAF 243

Query: 268 -PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIY 326
            P   S   ++ ++++      R+L    + +   L K + ++L+ ET V T+ +  ++ 
Sbjct: 244 DPAAFSEGVIEARIRE-RNLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVT 302

Query: 327 GYGSALK 333
             G A +
Sbjct: 303 PEGEARQ 309

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  247 bits (632), Expect = 3e-81
 Identities = 81/275 (29%), Positives = 150/275 (54%), Gaps = 7/275 (2%)

Query: 39  NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98
              +S  +  +L   +++YQD+ + ++  +G  LV+DG +Q+ E DEF Y E L H  + 
Sbjct: 43  GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 102

Query: 99  HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
            HP+PK + I+GGG+G   RE+L+H++VEKV MC+IDE V++  K +L      FS P+L
Sbjct: 103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 162

Query: 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
           +L   D    L++ K  +DVII D +DP+  GP   L+ +S+YE +++  L  +GI  +Q
Sbjct: 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ 219

Query: 219 AGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMASDSPFTLSAEELD 277
                ++ H  + + +    R++F  V    + + ++   + G+++ + +          
Sbjct: 220 GE--SVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTTPAR 277

Query: 278 MKVKKNIKGEN-RYLDGKTISSSSTLSKAVRKSLD 311
               + IK  N R+ + +   ++  L + V+ +L+
Sbjct: 278 TLTAEQIKALNLRFYNSEVHKAAFVLPQFVKNALE 312

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score =  240 bits (612), Expect = 1e-78
 Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 8/287 (2%)

Query: 27  RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
           R+  WY E     N+     +N ++++G++  Q I + +    G    +DG   + E DE
Sbjct: 13  RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 72

Query: 86  FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
           F+YHE L H  +  HPNPK + I+GGG+G T RE+L+H +VEK ++C++D  V+E  + Y
Sbjct: 73  FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 132

Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
           L      F DPR E+VI +    +   K  +DVII D  DP  G     L+T+ FY+   
Sbjct: 133 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGG-HLFTEEFYQACY 191

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMA 264
                 +G+F  +      F     F   Y  + +VF     Y   + ++ +  W +  A
Sbjct: 192 DAL-KEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 248

Query: 265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311
           S        ++ D +  +    E +Y + +   +S  L   V+K L 
Sbjct: 249 SKGI--DPIKDFDPEKVRKFNKELKYYNEEVHVASFALPNFVKKELG 293

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  235 bits (600), Expect = 8e-77
 Identities = 82/286 (28%), Positives = 148/286 (51%), Gaps = 9/286 (3%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +LH   +RYQDI +  +K +G  LV+DG +Q  E DEF Y
Sbjct: 5   WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 64

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + +  L  HPNP+ + I+GGG+G   RE+++H +VE VV C+IDE+V++  K +L  
Sbjct: 65  QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 124

Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
               +S  +L L + D    ++  ++++DVII D +DP+  GP   L+ +S+Y+  +K  
Sbjct: 125 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQL-MKTA 181

Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASDS 267
           L  +G+   Q      + H ++   +    + +F  V      IP++     G+++ S +
Sbjct: 182 LKEDGVLCCQGE--CQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN 239

Query: 268 PFTLSAEELDMKVKKNIKGEN-RYLDGKTISSSSTLSKAVRKSLDN 312
           P T   E +    ++ +     +Y +     ++  L +  RK+L++
Sbjct: 240 PSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKALND 285

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score =  223 bits (569), Expect = 2e-72
 Identities = 85/281 (30%), Positives = 150/281 (53%), Gaps = 11/281 (3%)

Query: 31  WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
           WY E+  +N   +  +N  LHT +T +Q + +++T+ FG  L +DG + ++E DEF+YHE
Sbjct: 4   WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63

Query: 91  SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
            + H  L  HPNP+ + ++GGG+G   REIL+H +V+K  + DID +V+E+ K +L    
Sbjct: 64  MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123

Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
               DPR+++ ++D    +   +  YDVI+ D  +P+  GP   L+TK FY   +   L 
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAG-IAKALK 180

Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSPF 269
            +GIFV Q      +   E+ + +   ++++F     Y+A+IP++ +  W + + S    
Sbjct: 181 EDGIFVAQTD--NPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD 238

Query: 270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
            L+ E+      +    E +Y       ++  L K V   +
Sbjct: 239 PLAVEDS-----RFFDIETKYYTKDIHKAAFVLPKFVSDLI 274

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  217 bits (553), Expect = 1e-69
 Identities = 88/290 (30%), Positives = 151/290 (52%), Gaps = 15/290 (5%)

Query: 31  WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
           W+ E          S  +  +L  G++ YQD+ +  +  +GK LV+DG +Q  E DE  Y
Sbjct: 7   WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 66

Query: 89  HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
            E + H  L   PNPK + ++GGG+G   RE+ RH ++E++ MC+ID+ VV+  K +   
Sbjct: 67  QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 126

Query: 149 NKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP 207
               + DPR+ LVI D  A L++  + SYD +I D +DPI  GP  +L+ K F++ V + 
Sbjct: 127 VAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR- 183

Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMAS 265
            L P G+  TQA    ++ H ++   I +  R++FK  V Y+   +P++ +   G+++ S
Sbjct: 184 ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS 241

Query: 266 DSP----FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311
                  F      +D    K   G  ++ + +  S++  L    +K ++
Sbjct: 242 TEGPDVDFKHPLNPIDESSSK-SNGPLKFYNAEIHSAAFCLPSFAKKVIE 290

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  207 bits (528), Expect = 4e-66
 Identities = 83/285 (29%), Positives = 146/285 (51%), Gaps = 17/285 (5%)

Query: 32  YEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHES 91
           + E        +F +   ++   ++YQ I + +T+ FG+ L +DG +Q   + E  YHE 
Sbjct: 2   FIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEP 61

Query: 92  LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE 151
           LVHPA+L HP PK + ++GGG+G T RE+L+H  V++V+M +IDE+V+   K  + ++  
Sbjct: 62  LVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNG 120

Query: 152 AF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
                      + +L I D    ++     +DVII D  DP+   P   L+++ FY + V
Sbjct: 121 LLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPVG--PAKVLFSEEFYRY-V 176

Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMAS 265
              LN  GI+VTQAG   ++  T+     Y  +++VF  V  YS  +  +A  W +++  
Sbjct: 177 YDALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGV 234

Query: 266 DSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL 310
                +   ++D +  K ++    Y D     +   + K +R++L
Sbjct: 235 KGD--IDFTKIDRERAKKLQL--EYYDPLMHETLFQMPKYIRETL 275

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	100.0
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	100.0
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	100.0
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	100.0
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	100.0
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	100.0
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.51
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.46
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.39
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.38
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.38
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.37
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.35
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.35
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.34
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.34
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.32
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.32
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.32
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.31
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.31
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.29
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.29
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.29
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.27
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.24
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.24
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.23
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.23
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.23
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.22
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.22
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.22
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.21
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.21
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.21
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.17
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.16
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.15
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.14
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.13
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.11
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.1
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.09
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.09
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.09
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.08
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.07
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.07
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.06
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.05
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.05
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.03
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.02
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.01
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.0
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.99
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.93
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.93
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.93
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.92
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.9
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.9
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.89
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.89
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.87
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.86
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.85
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.85
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.78
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.69
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.64
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.63
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.58
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.3
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.3
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.23
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.07
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.03
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.02
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.01
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.99
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.99
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.93
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.88
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.84
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.83
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.82
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.8
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.77
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.7
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.67
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.59
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.51
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.47
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.32
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.22
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.19
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.77
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.73
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.69
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.52
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.38
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.36
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.36
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.32
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.29
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.72
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.67
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.65
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.45
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.04
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.83
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.71
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.61
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.54
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.52
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.43
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.13
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.92
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.83
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.75
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.44
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.4
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.16
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.9
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.82
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.63
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.46
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.29
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	91.6
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.58
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.32
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.02
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.01
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	90.63
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.58
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.56
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.15
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.09
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.56
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	89.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.07
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.97
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.91
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.83
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.6
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.58
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.55
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.22
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.19
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.01
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	88.0
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.71
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	87.57
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.51
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.22
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.19
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.88
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.62
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	86.39
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.24
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	85.78
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	85.57
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	85.44
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.43
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.13
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	85.07
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.78
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.75
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	84.73
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	84.68
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	84.54
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.42
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	84.42
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.12
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.93
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.82
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	83.72
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.54
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	83.51
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	83.4
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.39
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	82.95
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.89
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	82.88
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	82.82
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	82.76
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.66
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	82.58
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.37
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.9
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.82
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	81.42
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.31
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	81.27
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.01
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	80.7
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.59
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	80.46
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	80.21
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.18
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.03

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.1e-69  Score=507.82  Aligned_cols=305  Identities=39%  Similarity=0.654  Sum_probs=278.3

Q ss_pred             cccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        27 ~~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      ..++||+|+.+++.+..++++++|++++|+||+|+|++++.+|++|+|||.+|++++||+.|||||+|+|++.|++|++|
T Consensus         2 ~~~~~~~e~~~~~~~~~~~~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~V   81 (312)
T d1uira_           2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV   81 (312)
T ss_dssp             CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCcEEEEEecCCCceEEEEEEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      |+||+|+|+++++++++++..+|++|||||+|+++|++||+. +.+.+++||++++++||++||++.+++||+||+|+++
T Consensus        82 LiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~d  161 (312)
T d1uira_          82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD  161 (312)
T ss_dssp             EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred             EEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCC
Confidence            999999999999999998889999999999999999999974 4556789999999999999999988999999999998


Q ss_pred             CCC-CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEE
Q 019699          186 PIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMA  264 (337)
Q Consensus       186 p~~-~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~a  264 (337)
                      |.. ..|+..|+|+|||+. ++++|+|||++++|++++. ....+..+.+.++++++|++|.+|.+++|+|++.|+|++|
T Consensus       162 p~~~~~~~~~L~t~eF~~~-~~~~L~p~Gvlv~~~~s~~-~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~a  239 (312)
T d1uira_         162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMIL-LTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLA  239 (312)
T ss_dssp             CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEEC-C---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEE
T ss_pred             cccccchhhhhhhHHHHHH-HHHhcCCCceEEEecCCcc-cchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEE
Confidence            753 346678999999999 8999999999999987663 3345567788899999999999999999999888999999


Q ss_pred             ecCCCC--CCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCcccccCCccccccccccccc
Q 019699          265 SDSPFT--LSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQ  334 (337)
Q Consensus       265 s~~p~~--~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~~~~~~~~~~~~~~~~  334 (337)
                      |+.+++  ++.+.+..|++++ ..++||||+++|.++|+||+++++.|.++++|+|||+|++++++|.+++-
T Consensus       240 S~~~~p~~~~~~~~~~~~~~~-~~~~~yy~~~~h~a~F~lp~~~~~~l~~~~~v~Td~~p~~~~~~~~~~~~  310 (312)
T d1uira_         240 SDAFDPAAFSEGVIEARIRER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEARQA  310 (312)
T ss_dssp             ESSSCTTCCCTTHHHHHHHHT-TCCCSSCCHHHHHHTTCCCHHHHHHHHHCCCCCCSSSCEEECTTSCEEEC
T ss_pred             eCCCCccccChhhhhhhHhhc-CCCccccCHHHHHHHhcCCHHHHHHHhcCCCccccCCccccCCCcccccC
Confidence            998644  4567788888776 45899999999999999999999999999999999999999999999863

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-66  Score=488.24  Aligned_cols=279  Identities=31%  Similarity=0.586  Sum_probs=248.6

Q ss_pred             cccceEEeeec-cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCe
Q 019699           27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (337)
Q Consensus        27 ~~~~w~~e~~~-~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~  105 (337)
                      +..+||+|..+ ++.+.+++++++|++++|+||+|+|++++.+|++|+|||.+|++++||+.|||||+|+|++.|++|++
T Consensus        13 ~~~~w~~e~~~~~~~~~~~~v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~   92 (295)
T d1inla_          13 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK   92 (295)
T ss_dssp             CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCcEEEEecccCCCceEEEEEEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCce
Confidence            34789999876 68899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      ||+||+|+|++++++++|+++.+|++|||||+|+++|++||+.+..+++|||++++++||++||++.+++||+||+|+++
T Consensus        93 VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d  172 (295)
T d1inla_          93 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD  172 (295)
T ss_dssp             EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred             EEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCC
Confidence            99999999999999999998999999999999999999999876667889999999999999999999999999999999


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMA  264 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~a  264 (337)
                      |.. +|+..|||.|||+. ++++|+|||++++|+++|  +.+.+.++.++++++++||++.+|.+++|+|+ +.|+|++|
T Consensus       173 p~~-~~~~~L~t~efy~~-~~~~L~~~Gi~v~q~~sp--~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~a  248 (295)
T d1inla_         173 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA  248 (295)
T ss_dssp             ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred             CCc-CchhhhccHHHHHH-HHhhcCCCcEEEEecCCh--hhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEE
Confidence            863 56678999999999 899999999999999887  67888999999999999999999999999994 68999999


Q ss_pred             ecCCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          265 SDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       265 s~~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ||.+.+.. +...+|+++ +..+|+|||+++|+++|+||+|+|+.|.
T Consensus       249 Sk~~~p~~-~~~~~~~~~-~~~~l~yy~~~~h~a~F~lP~~i~~~l~  293 (295)
T d1inla_         249 SKGIDPIK-DFDPEKVRK-FNKELKYYNEEVHVASFALPNFVKKELG  293 (295)
T ss_dssp             ESSCCTTT-TCCHHHHHT-CSSCCSSCCHHHHHHTTCCCHHHHHHTT
T ss_pred             eCCCCccc-ccCHHHHhh-ccCCCeecCHHHHHHHccCcHHHHHHhc
Confidence            99876542 223345554 3568999999999999999999999874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.6e-65  Score=475.52  Aligned_cols=272  Identities=31%  Similarity=0.644  Sum_probs=252.0

Q ss_pred             cceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEE
Q 019699           29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI  108 (337)
Q Consensus        29 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLi  108 (337)
                      ++||+|+.+++.+.+++++++|++++|+||+|+|+++..+|++|+|||.+|++++|++.|||||+|+|++.|++|++||+
T Consensus         2 ~~w~~e~~~~~~~~~~~i~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLi   81 (274)
T d1iy9a_           2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV   81 (274)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             CcceeeecCCCceEEEEEeeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCC
Q 019699          109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE  188 (337)
Q Consensus       109 IG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~  188 (337)
                      ||+|+|++++++++|++..+|++|||||+|+++|++||+...+.++|||++++++||++||++.+++||+||+|+++|. 
T Consensus        82 iGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~-  160 (274)
T d1iy9a_          82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV-  160 (274)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred             cCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCC-
Confidence            9999999999999998899999999999999999999987767789999999999999999998899999999999987 


Q ss_pred             CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEecC
Q 019699          189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASDS  267 (337)
Q Consensus       189 ~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as~~  267 (337)
                       +++..|||+|||+. ++++|+|+|++++|.++|  +.+++.+..+.++|+++|++|.+|.+.+|+|+ +.|+|++||++
T Consensus       161 -~~~~~L~t~eFy~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~  236 (274)
T d1iy9a_         161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK  236 (274)
T ss_dssp             -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             -CcchhhccHHHHHH-HHhhcCCCceEEEecCCc--cccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCC
Confidence             56679999999999 899999999999999887  66888999999999999999999999999994 67999999998


Q ss_pred             CCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhh
Q 019699          268 PFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSL  310 (337)
Q Consensus       268 p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l  310 (337)
                      .++...+..     +....++||||+++|+++|+||+|++++|
T Consensus       237 ~~p~~~~~~-----~~~~~~~kyyn~~ih~a~F~lP~~i~~~i  274 (274)
T d1iy9a_         237 YDPLAVEDS-----RFFDIETKYYTKDIHKAAFVLPKFVSDLI  274 (274)
T ss_dssp             CCTTCCCGG-----GCCCCCCSSCCHHHHHHTTCCCHHHHTTC
T ss_pred             CCcccchhh-----hccCCCCcccCHHHHHHHccCcHHHHHhC
Confidence            765432221     12234899999999999999999999875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-65  Score=479.97  Aligned_cols=277  Identities=30%  Similarity=0.592  Sum_probs=242.1

Q ss_pred             ccceEEeeec--cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCe
Q 019699           28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT  105 (337)
Q Consensus        28 ~~~w~~e~~~--~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~  105 (337)
                      ++.||+|..+  ++.+++++++++|++++|+||+|+|++++++|++|+|||.+|++++|++.|||||+|+|++.|++|++
T Consensus         2 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~   81 (285)
T d2o07a1           2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRK   81 (285)
T ss_dssp             BTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCE
T ss_pred             CCCcccccccCCCCceEEEEEeeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCe
Confidence            5789999866  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699          106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD  185 (337)
Q Consensus       106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d  185 (337)
                      ||+||+|+|++++++++|++..+|++|||||+|+++|++||+...+.++|||++++++||++||++..++||+||+|+++
T Consensus        82 vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~  161 (285)
T d2o07a1          82 VLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD  161 (285)
T ss_dssp             EEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-
T ss_pred             EEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC
Confidence            99999999999999999988999999999999999999999865556789999999999999999988999999999999


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMA  264 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~a  264 (337)
                      |.  +++..|+|+|||+. ++++|+|||++++|+++|  +.+.+.++.+.++++++||+|.+|.+++|+|+ +.|+|++|
T Consensus       162 p~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~a  236 (285)
T d2o07a1         162 PM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLC  236 (285)
T ss_dssp             ------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred             CC--CcccccccHHHHHH-HHHhcCCCCeEEEeccch--hhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEE
Confidence            87  56689999999999 899999999999999887  56788999999999999999999999999994 67999999


Q ss_pred             ecCCCCCCH----HHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699          265 SDSPFTLSA----EELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN  312 (337)
Q Consensus       265 s~~p~~~~~----~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~  312 (337)
                      ||+|.....    +...++..   ..+|+|||+++|+++|+||++++++|++
T Consensus       237 Sk~p~~~~~~~~~~~~~~~~~---~~~l~yYn~~~h~a~F~lP~~i~~~l~~  285 (285)
T d2o07a1         237 SKNPSTNFQEPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEFARKALND  285 (285)
T ss_dssp             ESSTTCCSSSCSSCCCHHHHH---HTTCSSCCHHHHHHTTCCCHHHHHHHHC
T ss_pred             ECCccccccccchhhHHHHhh---CCCceEeCHHHHHHHhcCcHHHHHHhcC
Confidence            998732111    11222222   2379999999999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-64  Score=476.75  Aligned_cols=266  Identities=30%  Similarity=0.602  Sum_probs=231.7

Q ss_pred             cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHH
Q 019699           38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA  117 (337)
Q Consensus        38 ~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~  117 (337)
                      |+.+++++++++||+++|+||+|+|++++.||++|+|||.+|++++|++.|||||+|+|++.|++|++||+||+|+|+++
T Consensus        42 pg~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~  121 (312)
T d2b2ca1          42 PGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGIL  121 (312)
T ss_dssp             TTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHH
T ss_pred             CCceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCch
Q 019699          118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT  197 (337)
Q Consensus       118 ~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t  197 (337)
                      +++++|+++.+|++||||++|+++|++||+....+++|||++++++||++||++.+++||+||+|+++|.  +++..|||
T Consensus       122 rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~--~~~~~L~t  199 (312)
T d2b2ca1         122 REVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFG  199 (312)
T ss_dssp             HHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------
T ss_pred             HHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCC--Ccchhhhh
Confidence            9999999899999999999999999999987667789999999999999999998899999999999987  66789999


Q ss_pred             HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEEecCCCC----CC
Q 019699          198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMASDSPFT----LS  272 (337)
Q Consensus       198 ~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~as~~p~~----~~  272 (337)
                      +|||+. ++++|+|||++++|+++|  +.+.+.+..+.++++++|++|.+|.+.+|+| ++.|+|++||+.+..    ..
T Consensus       200 ~eFy~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~~~~~~p~  276 (312)
T d2b2ca1         200 QSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTTPA  276 (312)
T ss_dssp             --HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCTTSCS
T ss_pred             HHHHHH-HHhhcCCCcEEEEecCCh--HHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCCCccccCcc
Confidence            999999 899999999999999887  6788899999999999999999999999999 468999999986431    11


Q ss_pred             HHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          273 AEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       273 ~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      .+...+|+..   .+|||||+++|+++|+||+|+|++|+
T Consensus       277 ~~~~~~~~~~---~~lryYn~~~h~a~F~lP~~~~~~le  312 (312)
T d2b2ca1         277 RTLTAEQIKA---LNLRFYNSEVHKAAFVLPQFVKNALE  312 (312)
T ss_dssp             SCCCHHHHHH---TTCSSCCHHHHHHTTCCCHHHHHTCC
T ss_pred             hhhhHHhhhc---cCceeECHHHHHHHccCcHHHHHhhC
Confidence            1223334332   27999999999999999999999874

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.8e-64  Score=469.32  Aligned_cols=277  Identities=31%  Similarity=0.602  Sum_probs=248.3

Q ss_pred             cceEEeeec--cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699           29 SCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI  106 (337)
Q Consensus        29 ~~w~~e~~~--~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V  106 (337)
                      .+||.|..+  ++.+++++++++|++++|+||+|+|++++.+||+|+|||.+|++++||+.|||||+|+|++.|++|++|
T Consensus         5 ~~w~~e~~~~~~~~~~~~~v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~V   84 (290)
T d1xj5a_           5 PGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKV   84 (290)
T ss_dssp             SSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEE
T ss_pred             CcceeccccCCCCceEEEEEeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcce
Confidence            469999865  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-CceeEEEEeCCC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVIIGDLAD  185 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvIi~D~~d  185 (337)
                      |+||+|+|++++++++|+++++|++||||++|+++|++||+.....+++||++++++||++|+++.. ++||+||+|+++
T Consensus        85 LiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~d  164 (290)
T d1xj5a_          85 LVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD  164 (290)
T ss_dssp             EEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCC
T ss_pred             EEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCC
Confidence            9999999999999999998999999999999999999999876667889999999999999998764 689999999999


Q ss_pred             CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE-eeccccC-CceEEEE
Q 019699          186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSFA-DTWGWIM  263 (337)
Q Consensus       186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~-~~vP~~~-~~~~~~~  263 (337)
                      |.  +++..|||.|||+. ++++|+|||++++|.++|  +.+.+.++.+.++++++||++.+|. +.+|+|+ +.|+|++
T Consensus       165 p~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~  239 (290)
T d1xj5a_         165 PI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFML  239 (290)
T ss_dssp             TT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEE
T ss_pred             CC--CcchhhCCHHHHHH-HHHhcCCCcEEEEecCCc--HHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEE
Confidence            87  67789999999999 899999999999999887  5688899999999999999999886 7899994 6899999


Q ss_pred             EecCCCCCCH----HHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          264 ASDSPFTLSA----EELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       264 as~~p~~~~~----~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      ||+++.+.+.    ..+.++. .+...+|||||+++|+++|+||+|+|++|+
T Consensus       240 as~~~~~~~~~~~~~~~~~~~-~~~~~~l~yYn~~ih~~~F~lP~~~~~~l~  290 (290)
T d1xj5a_         240 CSTEGPDVDFKHPLNPIDESS-SKSNGPLKFYNAEIHSAAFCLPSFAKKVIE  290 (290)
T ss_dssp             EECSSSCCCSSSCSSCCCSGG-GTTTCCCSSCCHHHHHHTTCCCHHHHHHHC
T ss_pred             EeCCCCccccccccchhHHHH-HhhcCCCcccCHHHHHHHccCcHHHHHhhC
Confidence            9987532211    1122221 223568999999999999999999999874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.7e-61  Score=445.44  Aligned_cols=268  Identities=31%  Similarity=0.588  Sum_probs=237.7

Q ss_pred             EeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecc
Q 019699           33 EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGG  112 (337)
Q Consensus        33 ~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G  112 (337)
                      .|+.+++.+..|+++++|++++|+||+|+|+++..+||+|+|||.+|++++|++.|||+|+|+|++.|++|++||+||+|
T Consensus         3 ~e~~~~~~~~~~~~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G   82 (276)
T d1mjfa_           3 IEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGG   82 (276)
T ss_dssp             EEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECT
T ss_pred             eeEecCCceEEEEEeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCC
Confidence            47778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC------CCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699          113 EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------AFSDPRLELVINDARAELESRKESYDVIIGDLADP  186 (337)
Q Consensus       113 ~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~------~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp  186 (337)
                      +|++++++++|+ ..+|++|||||+|+++|++||+....      ...|||++++++||++|+++ .++||+||+|+++|
T Consensus        83 ~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~  160 (276)
T d1mjfa_          83 DGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDP  160 (276)
T ss_dssp             TSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCC
T ss_pred             chHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCC
Confidence            999999999986 47999999999999999999976432      24689999999999999986 57899999999998


Q ss_pred             CCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEec
Q 019699          187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD  266 (337)
Q Consensus       187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~  266 (337)
                      .  +++..|+|.|||+. ++++|+|+|++++|+++|  +.+++.+..+.++|+++|++|.+|.+++|+|++.|+|++||+
T Consensus       161 ~--~~~~~L~t~eF~~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~  235 (276)
T d1mjfa_         161 V--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVK  235 (276)
T ss_dssp             C-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             C--CCcccccCHHHHHh-hHhhcCCCceEEEecCCc--chhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeC
Confidence            7  56689999999999 899999999999999877  567888899999999999999999999999988899999999


Q ss_pred             CCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699          267 SPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD  311 (337)
Q Consensus       267 ~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~  311 (337)
                      .+.++.. ..++|..   ..+++|||+++|+++|+||+|+++.|+
T Consensus       236 ~~~~~~~-~~~~~~~---~~~~~yy~~~~h~a~F~lP~~~~~~l~  276 (276)
T d1mjfa_         236 GDIDFTK-IDRERAK---KLQLEYYDPLMHETLFQMPKYIRETLQ  276 (276)
T ss_dssp             SSCCTTC-CCHHHHH---TSCCSSCCGGGGGGGGCCCHHHHHHHC
T ss_pred             CCCChhh-cChhhhh---cCCCeeECHHHHHHHccCcHHHHHHhC
Confidence            8865421 1122333   237999999999999999999999874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=2.5e-13  Score=117.42  Aligned_cols=140  Identities=18%  Similarity=0.225  Sum_probs=103.3

Q ss_pred             HHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699           89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus        89 ~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      .++|+.  .+...++++||+||||+|.++..+++..  .+|+++|+|+.+++.|++.+..+.  +.+.+++++.+|..+.
T Consensus        41 t~lLi~--~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~~  114 (194)
T d1dusa_          41 TKILVE--NVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYEN  114 (194)
T ss_dssp             HHHHHH--HCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTT
T ss_pred             HHHHHH--hCCcCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhC--CccceEEEEEcchhhh
Confidence            444442  3344667899999999999999998864  589999999999999999886542  4567899999998776


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      +.  +++||+|+++++-..  +   .-...++++. +.++|+|||++++-..      .......+.+.+++.|..+...
T Consensus       115 ~~--~~~fD~Ii~~~p~~~--~---~~~~~~~l~~-~~~~LkpgG~l~i~~~------~~~~~~~~~~~l~~~f~~~~~~  180 (194)
T d1dusa_         115 VK--DRKYNKIITNPPIRA--G---KEVLHRIIEE-GKELLKDNGEIWVVIQ------TKQGAKSLAKYMKDVFGNVETV  180 (194)
T ss_dssp             CT--TSCEEEEEECCCSTT--C---HHHHHHHHHH-HHHHEEEEEEEEEEEE------STHHHHHHHHHHHHHHSCCEEE
T ss_pred             hc--cCCceEEEEcccEEe--c---chhhhhHHHH-HHHhcCcCcEEEEEEe------CcCCHHHHHHHHHHhCCcEEEE
Confidence            54  478999999875322  1   1123578888 7999999998766431      1223445667788888877654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.6e-14  Score=123.23  Aligned_cols=122  Identities=11%  Similarity=0.091  Sum_probs=92.9

Q ss_pred             hhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           85 EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        85 e~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      +..|.+++..   ...+.+++||+||||+|.++.+++++. ..+|++||+|+.+++.|++++...     ..+++++.+|
T Consensus        39 ~~~~~~~la~---~~~~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~-----~~~~~~~~~~  109 (229)
T d1zx0a1          39 ETPYMHALAA---AASSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGL  109 (229)
T ss_dssp             GHHHHHHHHH---HHTTTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESC
T ss_pred             HHHHHHHHHH---hhccCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhc-----cccccccccc
Confidence            3445555432   223677899999999999999999875 478999999999999999987643     4678899999


Q ss_pred             HHHHHhhc-CCceeEEEEeCCCCCCCCCCcCC-chHHHHHHHhccccCCCceEEEe
Q 019699          165 ARAELESR-KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       165 ~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +....... .++||.|+.|.....  ....++ ....|++. ++++|+|||+|++.
T Consensus       110 ~~~~~~~~~~~~fD~i~fD~~~~~--~~~~~~~~~~~~~~~-~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         110 WEDVAPTLPDGHFDGILYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC  162 (229)
T ss_dssp             HHHHGGGSCTTCEEEEEECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred             ccccccccccccccceeecccccc--cccccccCHHHHHHH-HHHHcCCCcEEEEE
Confidence            98876553 478999999987433  111233 34568888 89999999999873

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=8.4e-12  Score=113.73  Aligned_cols=187  Identities=14%  Similarity=0.172  Sum_probs=128.4

Q ss_pred             cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHh-cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEE
Q 019699           55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD  133 (337)
Q Consensus        55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~-~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VE  133 (337)
                      -|-|+|.-...- +|.-+.+|-.+....++    +|.++...+. ....+.+||++|||+|+++..+++..+..+|+++|
T Consensus        65 ~PlqYI~G~~~F-~~~~~~v~~~VlIPRpe----TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avD  139 (274)
T d2b3ta1          65 EPIAHLTGVREF-WSLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVD  139 (274)
T ss_dssp             CCHHHHSCEEEE-TTEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEEC
T ss_pred             cChhhhcCcEEE-eeeEEEEeccccccccc----hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeecc
Confidence            355555543333 47788888877777655    6666544443 23557789999999999999999888889999999


Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC----------CCCCcCCch-----
Q 019699          134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLYT-----  197 (337)
Q Consensus       134 id~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~----------~~p~~~L~t-----  197 (337)
                      +++..+++|+++...+.    -.+++++.+|..+.+.  ..+||+|+++++- |..          ..|...|+.     
T Consensus       140 is~~Al~~A~~Na~~~~----~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl  213 (274)
T d2b3ta1         140 RMPDAVSLAQRNAQHLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM  213 (274)
T ss_dssp             SSHHHHHHHHHHHHHHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHT
T ss_pred             chhHHHhHHHHHHHHhC----cccceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccc
Confidence            99999999999976542    2479999999877654  3689999999972 211          123333433     


Q ss_pred             ---HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEE
Q 019699          198 ---KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMA  264 (337)
Q Consensus       198 ---~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~a  264 (337)
                         +.++.. +.++|+|+|.+++..+.    .+.+   .+.+.+++. |..+..+.    .+.+...+++|
T Consensus       214 ~~~~~i~~~-a~~~L~~~G~l~lEig~----~q~~---~v~~~l~~~gf~~i~~~k----Dl~g~~R~v~~  272 (274)
T d2b3ta1         214 ADIVHIIEQ-SRNALVSGGFLLLEHGW----QQGE---AVRQAFILAGYHDVETCR----DYGDNERVTLG  272 (274)
T ss_dssp             HHHHHHHHH-HGGGEEEEEEEEEECCS----SCHH---HHHHHHHHTTCTTCCEEE----CTTSSEEEEEE
T ss_pred             hHHHHHHHH-HHHhcCCCCEEEEEECc----hHHH---HHHHHHHHCCCCeEEEEE----CCCCCceEEEE
Confidence               336666 68899999999998752    2333   344444444 77665443    23344556655

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=6.2e-12  Score=107.79  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=95.4

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      .+...+..+||+||||+|.++.++++.  ..+|++||+|+++++.|++++..+.   -.++++++.+|+.+.+.. .+.|
T Consensus        28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g---l~~~v~~~~gda~~~~~~-~~~~  101 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCK-IPDI  101 (186)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTT-SCCE
T ss_pred             hcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC---CCcceEEEECchhhcccc-cCCc
Confidence            444466789999999999999999875  4689999999999999999986542   136999999999888754 4689


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      |+|+++....         ...++++. +.++|+|+|.+++...      ..+....+.+.+++..
T Consensus       102 D~v~~~~~~~---------~~~~~~~~-~~~~LkpgG~lvi~~~------~~e~~~~~~~~l~~~~  151 (186)
T d1l3ia_         102 DIAVVGGSGG---------ELQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLG  151 (186)
T ss_dssp             EEEEESCCTT---------CHHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCccc---------cchHHHHH-HHHHhCcCCEEEEEee------ccccHHHHHHHHHHcC
Confidence            9999985421         13578888 7999999999988742      2334445556666653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.38  E-value=7.1e-13  Score=119.48  Aligned_cols=126  Identities=14%  Similarity=0.153  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||++|||+|.++..+++. .+..+|+++|++++.++.|++++....   ...+++++.+|..+.+.  .+.||.
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~~~~--~~~fD~  157 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFIS--DQMYDA  157 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCCC--SCCEEE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeecccc--cceeee
Confidence            356689999999999999999876 456799999999999999999986432   24689999999877654  467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                      |++|.++|+           ++++. +.+.|+|||++++..  |    ..++...+...|++. |.....+
T Consensus       158 V~ld~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         158 VIADIPDPW-----------NHVQK-IASMMKPGSVATFYL--P----NFDQSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             EEECCSCGG-----------GSHHH-HHHTEEEEEEEEEEE--S----SHHHHHHHHHHSGGGTEEEEEEE
T ss_pred             eeecCCchH-----------HHHHH-HHHhcCCCceEEEEe--C----CcChHHHHHHHHHHCCCceeEEE
Confidence            999998765           34566 789999999999874  2    345677778888765 6554433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.37  E-value=6.8e-13  Score=110.59  Aligned_cols=107  Identities=15%  Similarity=0.228  Sum_probs=85.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -+.++||++|+|+|+++.+++.+ +..+|++||+|+.+++.+++++....   ...+++++.+|+.++++...++||+|+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc---cccchhhhcccccccccccccccceeE
Confidence            46789999999999999999886 46799999999999999999987542   246899999999999988889999999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHh--ccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~--~~~L~p~Gvlv~~~  219 (337)
                      +|+|..      ...+ ...+.. +  .+.|+|+|++++..
T Consensus        89 ~DPPy~------~~~~-~~~l~~-i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          89 LDPPYA------KETI-VATIEA-LAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             ECCSSH------HHHH-HHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred             echhhc------cchH-HHHHHH-HHHCCCcCCCeEEEEEe
Confidence            997521      1111 223333 2  36799999999865

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.35  E-value=1.7e-12  Score=113.73  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=82.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||||+|..+..++++.  .+|++||+++.+++.|++.+...    ..++++++++|+.+. .-..++||+|+
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~----~~~~i~~~~~d~~~l-~~~~~~fD~v~   86 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQM-PFTDERFHIVT   86 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-CC-CSCTTCEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc----ccccccccccccccc-ccccccccccc
Confidence            566899999999999999999874  68999999999999999987653    257899999998763 33457899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-.+-.      --..+++. +.++|+|||.+++.
T Consensus        87 ~~~~l~~~~------d~~~~l~~-~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFP------NPASFVSE-AYRVLKKGGQLLLV  117 (231)
T ss_dssp             EESCGGGCS------CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccccccccC------CHHHHHHH-HHHhcCCCcEEEEE
Confidence            875422110      12478898 89999999988764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.7e-11  Score=111.52  Aligned_cols=188  Identities=15%  Similarity=0.192  Sum_probs=132.8

Q ss_pred             CCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH--hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEE
Q 019699           56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD  133 (337)
Q Consensus        56 ~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l--~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VE  133 (337)
                      |.|+|.=.... +|.-+.+|..+....++    +|.++...+  .....+.+||++|+|+|.++..++++ +..+|+++|
T Consensus        67 Pl~YI~g~~~F-~~~~f~v~~~vlIPRpe----TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~D  140 (271)
T d1nv8a_          67 PLHYILGEKEF-MGLSFLVEEGVFVPRPE----TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATD  140 (271)
T ss_dssp             CHHHHHTEEEE-TTEEEECCTTSCCCCTT----HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEE
T ss_pred             ChhhhcCcEEE-eeeEEEEecCccCchhh----hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeech
Confidence            55665543333 57888999888887666    455543222  12345678999999999999988876 568999999


Q ss_pred             CChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC--------CCCCcCCch----HHH
Q 019699          134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE--------GGPCYKLYT----KSF  200 (337)
Q Consensus       134 id~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~--------~~p~~~L~t----~ef  200 (337)
                      ++++.+++|+++...+.   -..++.++.+|..+.+....++||+|++++|- |..        ..|...|+.    .+|
T Consensus       141 is~~Al~~A~~Na~~~~---~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~  217 (271)
T d1nv8a_         141 VSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDF  217 (271)
T ss_dssp             SCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHH
T ss_pred             hhhhHHHHHHHHHHHcC---CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHH
Confidence            99999999999976543   24688999999988877666899999999982 110        012112221    468


Q ss_pred             HHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecC
Q 019699          201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDS  267 (337)
Q Consensus       201 ~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~  267 (337)
                      |+.++++.|+|||++++..+.    .+.       ..+++.|..+..+    ..+.+...+++++|+
T Consensus       218 ~r~i~~~~L~~~G~l~~Eig~----~Q~-------~~v~~l~~~~g~~----kDl~g~~R~~~~~k~  269 (271)
T d1nv8a_         218 YREFFGRYDTSGKIVLMEIGE----DQV-------EELKKIVSDTVFL----KDSAGKYRFLLLNRR  269 (271)
T ss_dssp             HHHHHHHCCCTTCEEEEECCT----TCH-------HHHTTTSTTCEEE----ECTTSSEEEEEEECC
T ss_pred             HHHHHHHhcCCCCEEEEEECH----HHH-------HHHHHHHHhCCEE----eccCCCcEEEEEEEc
Confidence            887778999999999998752    222       3556667765432    355666788888876

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-11  Score=109.56  Aligned_cols=105  Identities=20%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      .+|++||+||+|.|..+..+++. +...+|+.+|+|++..+.|++++....   -.++++++.+|+.+.+.+.     ..
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag---~~~~i~~~~Gda~e~l~~~~~~~~~~  134 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG  134 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC---ccceEEEEEeehhhcchhhhhhcccC
Confidence            57899999999999999999875 446799999999999999999997542   2479999999998877542     57


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .||+|++|....         ...++|+. +.+.|+|||++++.
T Consensus       135 ~fD~ifiD~dk~---------~y~~~~~~-~~~lL~~GGvii~D  168 (219)
T d2avda1         135 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL  168 (219)
T ss_dssp             CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred             CccEEEEeCCHH---------HHHHHHHH-HHHHhcCCcEEEEe
Confidence            899999997421         12467887 78999999999884

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.34  E-value=1.3e-12  Score=116.33  Aligned_cols=105  Identities=13%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+++++||+||||+|..+..+++..  .+|++||+++.+++.|++.....     ..+++++.+|+.++-  ..++||+
T Consensus        34 ~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~  104 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNLN--INRKFDL  104 (246)
T ss_dssp             TTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGCC--CSCCEEE
T ss_pred             hCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc-----Cccceeeccchhhhc--ccccccc
Confidence            35678999999999999999999874  58999999999999999987643     357999999998752  3578999


Q ss_pred             EEEeCCCCCCCCCCcCCc----hHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~----t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-...      ..++.    ...+++. ++++|+|||++++..
T Consensus       105 i~~~~~~------~~~~~~~~~~~~~l~~-~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         105 ITCCLDS------TNYIIDSDDLKKYFKA-VSNHLKEGGVFIFDI  142 (246)
T ss_dssp             EEECTTG------GGGCCSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred             cceeeee------eeccCCHHHHHHHHHH-HHHhCCCCeEEEEEe
Confidence            9973210      11222    2358898 899999999999865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=4.1e-12  Score=115.23  Aligned_cols=142  Identities=18%  Similarity=0.198  Sum_probs=104.3

Q ss_pred             hHHHHHHhH-HHhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           87 IYHESLVHP-ALLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        87 ~Y~e~l~~~-~l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      +|..-...+ .++...+..+||++|||+|.++..+++. .+..+|+.+|++++.++.|++++..... ....+++++.+|
T Consensus        80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-~~~~nv~~~~~d  158 (264)
T d1i9ga_          80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSD  158 (264)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSC
T ss_pred             cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc-CCCceEEEEecc
Confidence            454433322 2334466789999999999999999986 4567999999999999999998764211 124689999999


Q ss_pred             HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh--hc
Q 019699          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VF  242 (337)
Q Consensus       165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~--vF  242 (337)
                      +.+. .-..+.||.|++|.++||           +++.. +++.|+|||.+++..  |    ..++..++...+++  .|
T Consensus       159 ~~~~-~~~~~~fDaV~ldlp~P~-----------~~l~~-~~~~LkpGG~lv~~~--P----~i~Qv~~~~~~l~~~~~f  219 (264)
T d1i9ga_         159 LADS-ELPDGSVDRAVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYV--A----TVTQLSRIVEALRAKQCW  219 (264)
T ss_dssp             GGGC-CCCTTCEEEEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHHSSB
T ss_pred             cccc-cccCCCcceEEEecCCHH-----------HHHHH-HHhccCCCCEEEEEe--C----ccChHHHHHHHHHHcCCe
Confidence            8653 223578999999999876           34566 789999999999875  3    34567777888863  36


Q ss_pred             CceeEE
Q 019699          243 KYVVPY  248 (337)
Q Consensus       243 ~~v~~~  248 (337)
                      -++..+
T Consensus       220 ~~i~~~  225 (264)
T d1i9ga_         220 TEPRAW  225 (264)
T ss_dssp             CCCEEE
T ss_pred             ecceEE
Confidence            665543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=5.6e-12  Score=111.35  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+..+||+||||+|.++..++++.  .+|++||+++.+++.|+++.....    -+++.++.+|+.+ +.-..++||+|
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~v   86 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAES-LPFPDDSFDII   86 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTB-CCSCTTCEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccc----ccccccccccccc-cccccccccee
Confidence            4677899999999999999999864  689999999999999999876532    3679999999876 33345789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++-..-.+  .+    --.++++. ++++|+|||.+++.
T Consensus        87 ~~~~~l~~--~~----d~~~~l~~-~~r~LkpgG~~~~~  118 (234)
T d1xxla_          87 TCRYAAHH--FS----DVRKAVRE-VARVLKQDGRFLLV  118 (234)
T ss_dssp             EEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeeceeec--cc----CHHHHHHH-HHHeeCCCcEEEEE
Confidence            98754222  11    12578998 89999999987764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3.1e-12  Score=113.88  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+..+||+||||+|.++..+++..+ .+|++||+++.+++.|++......   -++|++++.+|+.++.  .+++||+
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g---l~~~v~~~~~d~~~~~--~~~~fD~  103 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYV--ANEKCDV  103 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCC--CSSCEEE
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh---ccccchhhhhHHhhcc--ccCceeE
Confidence            345678999999999999999988764 689999999999999999865432   2468999999998864  3578999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-.....  .+    .-..+++. +++.|+|||.+++..
T Consensus       104 v~~~~~~~~--~~----d~~~~l~~-~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         104 AACVGATWI--AG----GFAGAEEL-LAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEESCGGG--TS----SSHHHHHH-HTTSEEEEEEEEEEE
T ss_pred             EEEEehhhc--cC----CHHHHHHH-HHHHcCcCcEEEEEe
Confidence            997654221  11    12578998 899999999998863

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=2.6e-12  Score=114.00  Aligned_cols=105  Identities=17%  Similarity=0.288  Sum_probs=82.6

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+++++||+||||+|..+..++++.  .+|++||+++.+++.|++.+...     +.+++++.+|+.++  ..+++||+
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~-----~~~i~~~~~d~~~l--~~~~~fD~  108 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEI--AFKNEFDA  108 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGC--CCCSCEEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccc-----cccchheehhhhhc--ccccccch
Confidence            34567899999999999999999863  58999999999999999987653     45899999998775  23468999


Q ss_pred             EEEeCCCCCCCCCCcCC---chHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-...      ..++   -...+++. ++++|+|||++++..
T Consensus       109 I~~~~~~------~~~~~~~~~~~~L~~-~~~~LkpgG~lii~~  145 (251)
T d1wzna1         109 VTMFFST------IMYFDEEDLRKLFSK-VAEALKPGGVFITDF  145 (251)
T ss_dssp             EEECSSG------GGGSCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             Hhhhhhh------hhcCChHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence            9985321      0111   12468998 899999999999864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.31  E-value=9.1e-12  Score=115.15  Aligned_cols=117  Identities=16%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~y  176 (337)
                      +.++++||+++||+|+++..+++. + .+|+.||+++..++.|++++..+.  +++.+++++.+|+.+|+++   ..++|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~-G-A~V~~VD~s~~al~~a~~N~~ln~--~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA-G-AEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC-C-CeEEEEeChHHHHHHHHHhhhhhc--ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            467889999999999999998875 3 589999999999999999988753  4566899999999999865   35889


Q ss_pred             eEEEEeCCCCCCCCCCcCC-----chHHHHHHHhccccCCCceE-EEeCCCC
Q 019699          177 DVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIF-VTQAGPA  222 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L-----~t~ef~~~~~~~~L~p~Gvl-v~~~~~p  222 (337)
                      |+||+|++.-.. ++....     +-....+. +.++|+|+|.+ ++.+.++
T Consensus       206 D~IilDPP~f~~-~~~~~~~~~~~~~~~l~~~-~~~ll~~~g~~ll~t~~s~  255 (309)
T d2igta1         206 DIILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI  255 (309)
T ss_dssp             SEEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT
T ss_pred             CEEEECCCcccc-cccchhHHHHHHHHHHHHH-HHHhcCCCCCEEEEecCCC
Confidence            999999973110 111111     11234455 67899999864 4444443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=1.6e-11  Score=107.14  Aligned_cols=127  Identities=10%  Similarity=0.120  Sum_probs=100.1

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEEEe
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD  182 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi~D  182 (337)
                      .-||+||||+|..+..+++..|...+++||+++.+++.|.+......    -++++++.+|+...+.. .++.+|.|++.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~----l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh----ccCchhcccchhhhhcccCchhhhccccc
Confidence            46999999999999999998888999999999999999988765432    36899999999877643 35789999999


Q ss_pred             CCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       183 ~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      .++|+....  ...|++.+|++. +++.|+|||+|.+.+.      +......+...+.+.
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~-~~r~LkpgG~l~i~TD------~~~y~~~~~~~~~~~  160 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY  160 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcchhhhHHHHHHH-HHHhCCCCcEEEEEEC------ChHHHHHHHHHHHHC
Confidence            998873211  135788999999 8999999999988642      344555555555543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.29  E-value=3.1e-11  Score=112.17  Aligned_cols=117  Identities=13%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~y  176 (337)
                      ..+.++||+++||+|+++.++++. +..+|++||+++..++.+++++..+.  ++..+++++.+|+.++++.   ..++|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~--l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhc--ccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            356789999999999999888774 56789999999999999999987664  4456899999999999865   45789


Q ss_pred             eEEEEeCCCCCCCCCCcCCch-----HHHHHHHhccccCCCceEEEeCCCC
Q 019699          177 DVIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t-----~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |+||+|+|.-.. .+ ..+.+     .+.++. +.++|+|||++++-+.++
T Consensus       219 D~Ii~DPP~f~~-~~-~~~~~~~~~~~~L~~~-a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         219 DIIIIDPPSFAR-NK-KEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEEECCCCC-------CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred             CEEEEcChhhcc-ch-hHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCc
Confidence            999999873211 11 12221     245565 568899999998876655

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.5e-11  Score=110.98  Aligned_cols=135  Identities=15%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++++||++|||+|.++..+++. + .+|++||+|+.+++.|+++...+.     -+.+++.+|..+.+..  ++||+|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~-g-~~V~gvDis~~av~~A~~na~~n~-----~~~~~~~~d~~~~~~~--~~fD~V  188 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL-G-GKALGVDIDPMVLPQAEANAKRNG-----VRPRFLEGSLEAALPF--GPFDLL  188 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCGGGHHHHHHHHHHTT-----CCCEEEESCHHHHGGG--CCEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhc-C-CEEEEEECChHHHHHHHHHHHHcC-----CceeEEeccccccccc--cccchh
Confidence            356789999999999999988875 3 689999999999999999887642     3568899998876543  689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADT  258 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~  258 (337)
                      +++...+       .  -.++++. ++++|+|||.+++..     ... +....+.+.+++. |..+....      .+.
T Consensus       189 ~ani~~~-------~--l~~l~~~-~~~~LkpGG~lilSg-----il~-~~~~~v~~~~~~~Gf~~~~~~~------~~~  246 (254)
T d2nxca1         189 VANLYAE-------L--HAALAPR-YREALVPGGRALLTG-----ILK-DRAPLVREAMAGAGFRPLEEAA------EGE  246 (254)
T ss_dssp             EEECCHH-------H--HHHHHHH-HHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHHTTCEEEEEEE------ETT
T ss_pred             hhccccc-------c--HHHHHHH-HHHhcCCCcEEEEEe-----cch-hhHHHHHHHHHHCCCEEEEEEE------ECC
Confidence            9885421       1  2467777 789999999998752     111 2234555666655 54433322      245


Q ss_pred             eEEEEEe
Q 019699          259 WGWIMAS  265 (337)
Q Consensus       259 ~~~~~as  265 (337)
                      |.-++..
T Consensus       247 Wv~l~~~  253 (254)
T d2nxca1         247 WVLLAYG  253 (254)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            7655443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=9.7e-11  Score=109.01  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      .+.++||++|+|+|+.+..+++. +..+|++||+++..++.|++++..++  + .++++++.+|+.+++..   .+++||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ng--l-~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNG--V-EDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--C-GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcC--C-CccceeeechhhhhhHHHHhccCCCC
Confidence            45789999999999999999886 45799999999999999999987763  2 35899999999988754   467899


Q ss_pred             EEEEeCCCCCCCCCCcCCch-----HHHHHHHhccccCCCceEEEeCCCC
Q 019699          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t-----~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      +|++|++.... .. ....+     .+++.. +.++|+|||++++-+.++
T Consensus       220 ~Vi~DpP~~~~-~~-~~~~~~~~~y~~l~~~-a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         220 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred             chhcCCccccC-CH-HHHHHHHHHHHHHHHH-HHHHcCCCcEEEEEeCCc
Confidence            99999974221 11 11111     335565 578999999988766554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=1.1e-11  Score=107.55  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=81.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++..+||+||||+|.++..+++.  ..+|+++|+++.+++.|++.+...     .+++..+.+|+.+. ....++||+|
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~-----~~~~~~~~~d~~~l-~~~~~~fD~I  106 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYV  106 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccc-----cccccccccccccc-cccCcCceEE
Confidence            366689999999999999999986  368999999999999999987543     35778899998763 3445889999


Q ss_pred             EEeCCCCCCCCCCcCCc---hHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~---t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-..-       .++-   -..+++. +.++|+|||.+++..
T Consensus       107 ~~~~~l-------~~~~~~d~~~~l~~-i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         107 IFIDSI-------VHFEPLELNQVFKE-VRRVLKPSGKFIMYF  141 (226)
T ss_dssp             EEESCG-------GGCCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEecch-------hhCChhHHHHHHHH-HHHHcCcCcEEEEEE
Confidence            986431       1222   2357888 799999999988764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=1.2e-10  Score=108.02  Aligned_cols=134  Identities=14%  Similarity=0.126  Sum_probs=95.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD  177 (337)
                      .+.++||++|||+|+++..+++.  ..+|++||+|+..++.|++++..++  +  .+++++.+|+.++++.   ..++||
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ng--l--~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG--L--GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT--C--TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcC--C--CCcceeeccHHHHhhhhHhhhcCCC
Confidence            46789999999999999988763  5799999999999999999988753  2  4689999999988654   457899


Q ss_pred             EEEEeCCCCCCCCCCcCCch-----HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHH-HHHHHhhhcCce
Q 019699          178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC-IYNTLRQVFKYV  245 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t-----~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~-i~~~l~~vF~~v  245 (337)
                      +|++|++.-.. +. ..+.+     .++++. +.+.|+|||++++.+.++.  ...+.+.. +.+.+...-..+
T Consensus       218 ~Vi~DpP~~~~-~~-~~~~~~~~~~~~l~~~-a~~lLkpGG~Lv~~scs~~--~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         218 LVVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSHH--MTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             EEEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCTT--SCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEcCCcccc-ch-HHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCcc--cCHHHHHHHHHHHHHHcCCCE
Confidence            99999973221 11 12221     245555 5789999999988765552  34444433 333444433333

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=1.1e-11  Score=112.44  Aligned_cols=138  Identities=19%  Similarity=0.254  Sum_probs=102.4

Q ss_pred             hHHHHHHhH-HHhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699           87 IYHESLVHP-ALLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND  164 (337)
Q Consensus        87 ~Y~e~l~~~-~l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D  164 (337)
                      +|..-...+ .++...+..+||++|||+|.++..+++. .+..+|+++|+++++++.|++++....   ...++.+..+|
T Consensus        87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d  163 (266)
T d1o54a_          87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRD  163 (266)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCC
T ss_pred             cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEecc
Confidence            444433322 3344567799999999999999999886 356799999999999999999987532   24688999999


Q ss_pred             HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cC
Q 019699          165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FK  243 (337)
Q Consensus       165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~  243 (337)
                      ....+  ....||.|++|.++|+           ++++. +.++|+|||.+++..  |    ..+.+.++.+.|++. |-
T Consensus       164 ~~~~~--~~~~~D~V~~d~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         164 ISEGF--DEKDVDALFLDVPDPW-----------NYIDK-CWEALKGGGRFATVC--P----TTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             GGGCC--SCCSEEEEEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHSSEE
T ss_pred             ccccc--cccceeeeEecCCCHH-----------HHHHH-HHhhcCCCCEEEEEe--C----cccHHHHHHHHHHHCCce
Confidence            64432  2467999999998765           34667 789999999999875  2    345667777888765 65


Q ss_pred             ceeE
Q 019699          244 YVVP  247 (337)
Q Consensus       244 ~v~~  247 (337)
                      ++..
T Consensus       224 ~i~~  227 (266)
T d1o54a_         224 RIEV  227 (266)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2e-11  Score=104.70  Aligned_cols=105  Identities=14%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +..+|||++||+|.++.|++.+ +..+|+.||+|+..++.+++++....    ..+.+++.+|+.+|+....++||+|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~----~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhcc----ccceeeeeecccccccccccccCEEEE
Confidence            5679999999999999999986 46899999999999999999986532    356899999999999888889999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHh--ccccCCCceEEEeC
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~--~~~L~p~Gvlv~~~  219 (337)
                      |+|...      .++ .+.+.. +  ...|+++|++++..
T Consensus       118 DPPY~~------~~~-~~~l~~-l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFRR------GLL-EETINL-LEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSST------TTH-HHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred             cCcccc------chH-HHHHHH-HHHCCCCCCCeEEEEEe
Confidence            986321      222 234444 3  35799999999874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.23  E-value=1.7e-11  Score=108.72  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=87.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc------C
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~------~  173 (337)
                      .+|++||+||++.|..+..+++. ++..+|+.+|+|++..+.|++++....  + .++++++.+|+.+.+.+.      .
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~-~~~i~~~~g~a~~~L~~l~~~~~~~  134 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--V-DHKIDFREGPALPVLDEMIKDEKNH  134 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--C-GGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--c-ccceeeeehHHHHHHHHHHhccccC
Confidence            57899999999999999999864 456899999999999999999997542  2 469999999999998763      4


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++||+|++|+...         ...++|+. +.++|+|||++++.
T Consensus       135 ~~fD~iFiDa~k~---------~y~~~~e~-~~~ll~~gGiii~D  169 (227)
T d1susa1         135 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD  169 (227)
T ss_dssp             TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred             CceeEEEeccchh---------hhHHHHHH-HHhhcCCCcEEEEc
Confidence            6899999997421         13578888 78999999999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=1.8e-11  Score=107.36  Aligned_cols=108  Identities=19%  Similarity=0.293  Sum_probs=82.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      .++..+||+||||+|..+..++++  .+..+|++||+++.|++.|++......   ...++++..+|..++   ....+|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~d  110 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV---EIKNAS  110 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCTTTC---CCCSEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchhhcc---ccccce
Confidence            356689999999999999999875  356799999999999999999875432   356888898887654   346799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +|++...-..  -+  .--...+++. +++.|+|||.+++.
T Consensus       111 ~i~~~~~l~~--~~--~~d~~~~l~~-i~~~LkpgG~li~~  146 (225)
T d1im8a_         111 MVILNFTLQF--LP--PEDRIALLTK-IYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEEESCGGG--SC--GGGHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeEEeeeccc--cC--hhhHHHHHHH-HHHhCCCCceeecc
Confidence            9988755322  11  0122478999 89999999998875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.3e-11  Score=113.35  Aligned_cols=137  Identities=11%  Similarity=0.208  Sum_probs=97.8

Q ss_pred             hHHHHHHhH-HHhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhcc-------CCCCCCC
Q 019699           87 IYHESLVHP-ALLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-------EAFSDPR  157 (337)
Q Consensus        87 ~Y~e~l~~~-~l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~-------~~~~d~r  157 (337)
                      +|..-...+ .++...++.+||++|+|+|.++..+++. .+..+|+++|+++++++.|++++....       ......+
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            455433322 3344567799999999999999999885 356799999999999999999875321       0112468


Q ss_pred             eEEEEccHHHHHhh-cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH
Q 019699          158 LELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (337)
Q Consensus       158 v~v~~~D~~~~l~~-~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~  236 (337)
                      +.++.+|...+... ....||.||+|.++||.           .+.. +.++|+|||++++..  |    ..+++..++.
T Consensus       162 v~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~-----------~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~  223 (324)
T d2b25a1         162 VDFIHKDISGATEDIKSLTFDAVALDMLNPHV-----------TLPV-FYPHLKHGGVCAVYV--V----NITQVIELLD  223 (324)
T ss_dssp             EEEEESCTTCCC-------EEEEEECSSSTTT-----------THHH-HGGGEEEEEEEEEEE--S----SHHHHHHHHH
T ss_pred             eeEEecchhhcccccCCCCcceEeecCcCHHH-----------HHHH-HHHhccCCCEEEEEe--C----CHHHHHHHHH
Confidence            99999998765433 24679999999988872           3456 789999999999874  3    3456677778


Q ss_pred             HHhhh
Q 019699          237 TLRQV  241 (337)
Q Consensus       237 ~l~~v  241 (337)
                      .|++.
T Consensus       224 ~l~~~  228 (324)
T d2b25a1         224 GIRTC  228 (324)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.22  E-value=5.7e-12  Score=113.45  Aligned_cols=102  Identities=16%  Similarity=0.251  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||||+|.++..++... ..+|++||+++.+++.||+.+..      .++++++.+|+.++- -.+++||+|+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~~~~-~~~~~fD~I~  163 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETAT-LPPNTYDLIV  163 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGCC-CCSSCEEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc------cccceeEEccccccc-cCCCccceEE
Confidence            567899999999999999887643 35899999999999999998653      367899999987653 2357899999


Q ss_pred             EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-..-       .++..   .+|++. +++.|+|||.+++.
T Consensus       164 ~~~vl-------~hl~d~d~~~~l~~-~~~~LkpgG~iii~  196 (254)
T d1xtpa_         164 IQWTA-------IYLTDADFVKFFKH-CQQALTPNGYIFFK  196 (254)
T ss_dssp             EESCG-------GGSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             eeccc-------cccchhhhHHHHHH-HHHhcCCCcEEEEE
Confidence            97642       23332   378998 89999999998874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.22  E-value=6.3e-11  Score=103.32  Aligned_cols=128  Identities=16%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEEE
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG  181 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi~  181 (337)
                      ..-||+||||+|..+.++++..|...+++||+++.++..|.+.....    .-++++++.+|+..++.. ....+|.|++
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~----~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh----ccccceeeecCHHHHhhhccCCceehhcc
Confidence            34699999999999999999878899999999999999887766533    236899999999876543 2478999999


Q ss_pred             eCCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699          182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV  241 (337)
Q Consensus       182 D~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v  241 (337)
                      ..++||....  -..+.+.+|++. ++++|+|||.+.+.+.      +...+..+...+.+.
T Consensus       108 ~fPdPw~K~~h~krRl~~~~~l~~-~~~~LkpgG~l~i~TD------~~~Y~~~~le~~~~~  162 (204)
T d1yzha1         108 NFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY  162 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhHHHHHHH-HHHhCCCCcEEEEEEC------CccHHHHHHHHHHHC
Confidence            9999983111  125788999998 8999999999987642      344555555555543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.21  E-value=1.3e-11  Score=112.21  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++..+||+||||+|.++..+++++ ..+|++||+++.+++.|++......   -.++++++.+|+.+. .-..++||+|
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g---l~~~v~~~~~d~~~l-~~~~~sfD~V  139 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFI  139 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc---ccccccccccccccc-cccccccchh
Confidence            3567899999999999999999875 3689999999999999999876432   146999999998764 3335789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-..-..  .+    .-..+++. +.++|+|||.+++..
T Consensus       140 ~~~~~l~h--~~----d~~~~l~~-~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         140 WSQDAFLH--SP----DKLKVFQE-CARVLKPRGVMAITD  172 (282)
T ss_dssp             EEESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hccchhhh--cc----CHHHHHHH-HHHhcCCCcEEEEEE
Confidence            88643111  11    12468888 899999999988753

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.5e-11  Score=107.76  Aligned_cols=104  Identities=24%  Similarity=0.276  Sum_probs=82.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ....+||+||||+|..+..+++.. ..+|++||+++++++.||+.+....    .++++++.+|+.++- ...++||+|+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~----~~~~~f~~~d~~~~~-~~~~~fD~I~  132 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIW  132 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc----ccccccccccccccc-cccccccccc
Confidence            456899999999999999987654 4689999999999999999876532    357899999998753 3358899999


Q ss_pred             EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-       .++-.   .++++. +++.|+|||.+++.
T Consensus       133 ~~~~l-------~h~~~~~~~~~l~~-i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         133 IQWVI-------GHLTDQHLAEFLRR-CKGSLRPNGIIVIK  165 (222)
T ss_dssp             EESCG-------GGSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccccc-------ccchhhhhhhHHHH-HHHhcCCcceEEEE
Confidence            87532       22222   368898 89999999988874

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.21  E-value=3.7e-11  Score=102.91  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCce
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~y  176 (337)
                      .-+..+||++++|+|+++.|++.+ +..+|++||.|++.++.+++++....   ...+++++.+|+.++++.   ...+|
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~~l~~~~~~~~~f  114 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQF  114 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchhhhhhhcccCCCc
Confidence            346799999999999999999996 46899999999999999999986432   235899999999999865   35689


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~  219 (337)
                      |+|++|+|-..      ..+ .+.+..+. ...|+++|++++..
T Consensus       115 DlIflDPPY~~------~~~-~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         115 DLVLLDPPYAK------QEI-VSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             EEEEECCCGGG------CCH-HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ceEEechhhhh------hHH-HHHHHHHHHCCCCCCCEEEEEEc
Confidence            99999986321      222 23444422 35799999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.17  E-value=1.3e-11  Score=110.36  Aligned_cols=113  Identities=14%  Similarity=0.126  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .++.++||+||||+|..+..+++.. ..+|++||+++.+++.|++......   ..+++.++.+|+........++||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhhcccccccceEE
Confidence            3567899999999999988888763 5689999999999999998765322   24579999999854322345789999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++...-..  .+...-.-..+++. ++++|+|||++++..
T Consensus        98 ~~~~~l~~--~~~~~~~~~~~l~~-i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHY--AFSTSESLDIAQRN-IARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGG--GGSSHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEcceeee--cCCCHHHHHHHHHH-HhceeCCCCEEEEEe
Confidence            98754211  00000011358888 799999999998764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.16  E-value=4.7e-11  Score=102.74  Aligned_cols=106  Identities=13%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..|.+||+||||+|..+..++++  ..+|++||+++.+++.|++.....    .-+++++...|..+..  ..++||+|+
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~I~  100 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAE----GLDNLQTDLVDLNTLT--FDGEYDFIL  100 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT----TCTTEEEEECCTTTCC--CCCCEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhc----cccchhhhheeccccc--ccccccEEE
Confidence            46789999999999999999986  368999999999999999887643    2367999999976653  257899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +...-..  -|.  -.-..+++. +.++|+|||++++..
T Consensus       101 ~~~~~~~--~~~--~~~~~~l~~-~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         101 STVVMMF--LEA--QTIPGLIAN-MQRCTKPGGYNLIVA  134 (198)
T ss_dssp             EESCGGG--SCT--THHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             Eeeeeec--CCH--HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence            8765221  111  112468888 799999999887753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.15  E-value=4.4e-11  Score=108.94  Aligned_cols=105  Identities=14%  Similarity=0.097  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+|.+||+||||+|..+..++++.+ ..+|++||+++.+++.|++.+...     ..+++++.+|+.+.  ...++||+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-----~~~~~f~~~d~~~~--~~~~~fD~   97 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEI--ELNDKYDI   97 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-----SSEEEEEESCTTTC--CCSSCEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-----cccccccccccccc--cccCCceE
Confidence            36789999999999999999988644 468999999999999999987643     24689999998653  22467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++...-.....      -..+++. +.++|+|||.+++.
T Consensus        98 v~~~~~l~~~~d------~~~~l~~-~~~~LkpgG~lii~  130 (281)
T d2gh1a1          98 AICHAFLLHMTT------PETMLQK-MIHSVKKGGKIICF  130 (281)
T ss_dssp             EEEESCGGGCSS------HHHHHHH-HHHTEEEEEEEEEE
T ss_pred             EEEehhhhcCCC------HHHHHHH-HHHHcCcCcEEEEE
Confidence            998865322111      2468888 79999999988764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=8.7e-11  Score=107.20  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=82.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..++.+||+||||.|+++..++++.+ .+|++|+++++.++.|++......   ...++.+...|.+++    +++||.|
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~---l~~~~~~~~~d~~~~----~~~fD~i  121 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRI  121 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhc---cccchhhhhhhhhhh----ccchhhh
Confidence            35678999999999999999988765 699999999999999999875432   246788888886543    5789999


Q ss_pred             EEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++--. ...  +   .-.-..||+. +++.|+|||.++++.
T Consensus       122 ~si~~~eh~--~---~~~~~~~f~~-i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         122 VSIEAFEHF--G---HENYDDFFKR-CFNIMPADGRMTVQS  156 (280)
T ss_dssp             EEESCGGGT--C---GGGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             hHhhHHHHh--h---hhhHHHHHHH-HHhccCCCceEEEEE
Confidence            87643 221  1   1122579999 899999999999985

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.13  E-value=2.9e-10  Score=99.29  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yDv  178 (337)
                      .+..+||+||||+|.++..+++..+..+|++||++|.+++.+++....      .+++..+.+|+...-.  .....+|+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~------~~ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc------cCCceEEEeeccCccccccccceEEE
Confidence            456899999999999999999886667999999999999999887543      2589999999865322  12356888


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC-----CCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-----GPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP  253 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~-----~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP  253 (337)
                      |+.|...+.        ....|+++ +.+.|+|||.+++-.     .++  ......++...+.+++-|..+..  ...+
T Consensus       129 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~~~~~~~d~~--~~~~~~~~~~~~~l~~gf~i~E~--i~L~  195 (209)
T d1nt2a_         129 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMVKARSIDST--AEPEEVFKSVLKEMEGDFKIVKH--GSLM  195 (209)
T ss_dssp             EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTT--SCHHHHHHHHHHHHHTTSEEEEE--EECT
T ss_pred             EEecccChh--------hHHHHHHH-HHHHhccCCeEEEEEEccccCCC--CCHHHHHHHHHHHHHcCCEEEEE--EccC
Confidence            888865432        23578888 799999999887632     111  12234566677777777765543  2344


Q ss_pred             ccC
Q 019699          254 SFA  256 (337)
Q Consensus       254 ~~~  256 (337)
                      .|.
T Consensus       196 P~~  198 (209)
T d1nt2a_         196 PYH  198 (209)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            453

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=8.8e-11  Score=103.03  Aligned_cols=100  Identities=18%  Similarity=0.266  Sum_probs=75.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+++.+||+||||+|..+..+++.  ..+|++||+++.+++.|++....          .++.+|+.+ +.-..++||+|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~----------~~~~~~~~~-l~~~~~~fD~i  106 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK----------NVVEAKAED-LPFPSGAFEAV  106 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS----------CEEECCTTS-CCSCTTCEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc----------ccccccccc-cccccccccce
Confidence            357789999999999999999886  36899999999999999986321          256677665 33335889999


Q ss_pred             EEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++-.. -..  .+    -..++++. +.+.|+|||++++..
T Consensus       107 i~~~~~~~~--~~----d~~~~l~~-i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         107 LALGDVLSY--VE----NKDKAFSE-IRRVLVPDGLLIATV  140 (246)
T ss_dssp             EECSSHHHH--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             eeecchhhh--hh----hHHHHHHH-HHhhcCcCcEEEEEE
Confidence            87432 111  01    12468888 799999999998865

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.8e-10  Score=100.85  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=79.5

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ...+..+||+||||+|..+..+++. .+..+|+++|+++++++.|++.+...    .-.++.++.+|+.+-+.. .++||
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~----~~~n~~~~~~d~~~~~~~-~~~fD  146 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL----GIENVIFVCGDGYYGVPE-FSPYD  146 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEE
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh----cccccccccCchHHcccc-ccchh
Confidence            3466789999999999999988875 34578999999999999999998653    236788999998765433 36799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+++..-+.  .|          +. +.+.|+|||.+++-.
T Consensus       147 ~I~~~~~~~~--~p----------~~-l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         147 VIFVTVGVDE--VP----------ET-WFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEECSBBSC--CC----------HH-HHHHEEEEEEEEEEB
T ss_pred             hhhhhccHHH--hH----------HH-HHHhcCCCcEEEEEE
Confidence            9999865322  22          22 456799999998854

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=3.1e-10  Score=104.04  Aligned_cols=112  Identities=19%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+..+||+||||.|+++++++++.+ .+|++|+++++.++.+++......   ...++++...|..    ..+++||.
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~---l~~~v~~~~~d~~----~~~~~fD~  129 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWE----EFDEPVDR  129 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSC---CSSCEEEEECCGG----GCCCCCSE
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhc---cchhhhhhhhccc----ccccccce
Confidence            346778999999999999999987765 699999999999999998765422   2468999999964    33578999


Q ss_pred             EEEeCC-CCCCCCC-Cc-CCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLA-DPIEGGP-CY-KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~-dp~~~~p-~~-~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++--. .+..... .. .=+=+.||+. +.+.|+|||.++++.
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~-i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHH-HHHhCCCCCceEEEE
Confidence            987643 2221000 00 0112579998 899999999999885

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=9.2e-11  Score=105.99  Aligned_cols=101  Identities=18%  Similarity=0.101  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||++|||.|.++..++++. .++|++||+||..++.++++...++  + +.+++++.+|++++..  ...||.|+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~--l-~~~v~~~~~D~~~~~~--~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--V-EDRMSAYNMDNRDFPG--ENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--C-TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC--C-CceEEEEEcchHHhcc--CCCCCEEE
Confidence            567899999999999999999874 5789999999999999999988764  2 4689999999998864  36799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ++++.          .+.+|+.. +.+.|++||++.+.
T Consensus       180 ~~~p~----------~~~~~l~~-a~~~l~~gG~lh~~  206 (260)
T d2frna1         180 MGYVV----------RTHEFIPK-ALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECCCS----------SGGGGHHH-HHHHEEEEEEEEEE
T ss_pred             ECCCC----------chHHHHHH-HHhhcCCCCEEEEE
Confidence            98652          12367776 67889999998654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=8.6e-10  Score=97.68  Aligned_cols=148  Identities=18%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC--CceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~--~~yDv  178 (337)
                      .+..+||+||||+|.++..+++..+..+|++||+++.+++.+++...      ..+++..+.+|+........  ..+|+
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~------~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA------ERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT------TCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh------hhcccceEEEeeccCcccccccceeEE
Confidence            45679999999999999999998777899999999999999887532      24788899999876654333  34555


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC--CCCCc-CCChhHHHHHHHHHhhh-cCceeEEEeeccc
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGI-FSHTEVFSCIYNTLRQV-FKYVVPYSAHIPS  254 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~--~~p~~-~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~  254 (337)
                      |+.+...+.  .      ...++.+ +++.|+|||.+++..  .+... ......++++.+.|++. |..+...  .+..
T Consensus       147 i~~~~~~~~--~------~~~~l~~-~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i--dL~p  215 (230)
T d1g8sa_         147 IYEDVAQPN--Q------AEILIKN-AKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV--DIEP  215 (230)
T ss_dssp             EEECCCSTT--H------HHHHHHH-HHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE--ECTT
T ss_pred             eeccccchH--H------HHHHHHH-HHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Confidence            666654322  1      2567888 799999999877642  11110 12234567777788876 7655432  3445


Q ss_pred             cCCceEEEEEe
Q 019699          255 FADTWGWIMAS  265 (337)
Q Consensus       255 ~~~~~~~~~as  265 (337)
                      |......++|.
T Consensus       216 y~~~H~~vvg~  226 (230)
T d1g8sa_         216 FEKDHVMFVGI  226 (230)
T ss_dssp             TSTTEEEEEEE
T ss_pred             CcCCeEEEEEE
Confidence            54445556664

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.08  E-value=4.1e-11  Score=101.37  Aligned_cols=117  Identities=11%  Similarity=0.002  Sum_probs=82.9

Q ss_pred             HHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC--------CCCCCCeEEEEccHH
Q 019699           95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDAR  166 (337)
Q Consensus        95 ~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~--------~~~d~rv~v~~~D~~  166 (337)
                      .+.+..+++.+||++|||+|..+..++++  ..+|++||+++.+++.|++.......        .......+++.+|..
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            45556678899999999999999999987  36899999999999999997642110        012456788888876


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +.-......||+|++...-..  -+  .-....+++. +.+.|+|||.+++.
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~--l~--~~~~~~~~~~-i~~~LkpgG~l~l~  137 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIA--LP--ADMRERYVQH-LEALMPQACSGLLI  137 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGG--SC--HHHHHHHHHH-HHHHSCSEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEe--cc--hhhhHHHHHH-HHHhcCCCcEEEEE
Confidence            543333467999987654211  01  0112457787 78999999976653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.07  E-value=1.7e-10  Score=102.04  Aligned_cols=100  Identities=21%  Similarity=0.312  Sum_probs=77.9

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+..+||+||+|+|.++..+++.  ..+|+++|++++.++.|++.+..      ..+++++.+|+..-... ..+||+
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d~~~g~~~-~~pfD~  137 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY------YNNIKLILGDGTLGYEE-EKPYDR  137 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT------CSSEEEEESCGGGCCGG-GCCEEE
T ss_pred             hhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc------ccccccccCchhhcchh-hhhHHH
Confidence            3466789999999999999887775  47899999999999999997643      36899999999774443 467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++...-+.  -|          +. +.+.|+|||.+++-.+
T Consensus       138 Iiv~~a~~~--ip----------~~-l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         138 VVVWATAPT--LL----------CK-PYEQLKEGGIMILPIG  166 (224)
T ss_dssp             EEESSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             HHhhcchhh--hh----------HH-HHHhcCCCCEEEEEEc
Confidence            999875332  22          12 3567999999988654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.1e-10  Score=103.71  Aligned_cols=97  Identities=18%  Similarity=0.225  Sum_probs=78.1

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...++.+||+||||+|..+..++++.+..++++||+++.+++.|++.         .++++++++|+.+. .-.++.||+
T Consensus        81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~---------~~~~~~~~~d~~~l-~~~~~sfD~  150 (268)
T d1p91a_          81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR---------YPQVTFCVASSHRL-PFSDTSMDA  150 (268)
T ss_dssp             SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH---------CTTSEEEECCTTSC-SBCTTCEEE
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc---------cccccceeeehhhc-cCCCCCEEE
Confidence            34678899999999999999999987778999999999999999875         36789999998653 334578999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-..      | .+      +++ +.|.|+|||.+++..
T Consensus       151 v~~~~~------~-~~------~~e-~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         151 IIRIYA------P-CK------AEE-LARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEESC------C-CC------HHH-HHHHEEEEEEEEEEE
T ss_pred             EeecCC------H-HH------HHH-HHHHhCCCcEEEEEe
Confidence            997532      2 12      355 678899999998875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.06  E-value=1.5e-10  Score=101.50  Aligned_cols=99  Identities=12%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .++++||+||||+|.+++.+++..  .+|++||+++++++.||+.+.        .+++++.+|...+.  .+++||+|+
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~--~~~~fD~I~   86 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQ--LPRRYDNIV   86 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCC--CSSCEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc--------cccccccccccccc--ccccccccc
Confidence            467899999999999999988753  579999999999999998642        36899999987653  357899999


Q ss_pred             EeCCCCCCCCCCcCCc-hHHHHHHHhc-cccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLY-TKSFYEFVVK-PRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~-t~ef~~~~~~-~~L~p~Gvlv~~~  219 (337)
                      +-..-       .++. ...+++. ++ ++|+|||.+++..
T Consensus        87 ~~~vl-------eh~~d~~~~l~~-i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          87 LTHVL-------EHIDDPVALLKR-INDDWLAEGGRLFLVC  119 (225)
T ss_dssp             EESCG-------GGCSSHHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred             cccee-------EecCCHHHHHHH-HHHHhcCCCceEEEEe
Confidence            86431       2222 2567777 65 7899999998864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=2.7e-10  Score=99.91  Aligned_cols=106  Identities=9%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~  174 (337)
                      .+|++||+||+|.|..+..+++. .+..+|+++|++++..+.|++++....   -..+++++.+|+.+.+.+.     .+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g---l~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC---CCccceeeeccccccccchhhccccc
Confidence            57899999999999999999875 446799999999999999999986532   1468999999999987652     36


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchH-HHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTK-SFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~-ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .||+|++|...        ..+.. ..+.. +.++|+|||++++.
T Consensus       132 ~~D~ifiD~~~--------~~~~~~~~l~~-~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         132 TLDMVFLDHWK--------DRYLPDTLLLE-KCGLLRKGTVLLAD  167 (214)
T ss_dssp             CEEEEEECSCG--------GGHHHHHHHHH-HTTCEEEEEEEEES
T ss_pred             ccceeeecccc--------cccccHHHHHH-HhCccCCCcEEEEe
Confidence            79999999531        11222 22334 46899999999874

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=9.5e-10  Score=92.94  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh---hcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~---~~~~~yD  177 (337)
                      +...+||++|||+|+++.+++++.  .++++||+|+.+++.+++++....     -..+++..|+..++.   ...++||
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG-----LGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT-----CCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhc-----cccceeeeehhcccccccccCCccc
Confidence            677899999999999999988863  579999999999999999987542     123566666655543   3457899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|++|+|...      .+ ..-+.+...+..|+|||++++..
T Consensus       113 ~If~DPPY~~------~~-~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         113 VAFMAPPYAM------DL-AALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             EEEECCCTTS------CT-THHHHHHHHHTCEEEEEEEEEEE
T ss_pred             eeEEcccccc------CH-HHHHHHHHHcCCcCCCeEEEEEe
Confidence            9999986322      11 11222221135799999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.7e-10  Score=100.63  Aligned_cols=106  Identities=24%  Similarity=0.338  Sum_probs=79.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhcc-CCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~-~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+..+||+||||+|..+..+++. .+..+|++||+++++++.|++++.... ......+++++.+|+..-... ...||+
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~  153 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDA  153 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-hhhhhh
Confidence            45679999999999988777764 346799999999999999999875321 111246899999999764433 468999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |+++...+.  -|          +. +.+.|+|||.+++-.+
T Consensus       154 I~~~~~~~~--ip----------~~-l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         154 IHVGAAAPV--VP----------QA-LIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEECSBBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred             hhhhcchhh--cC----------HH-HHhhcCCCcEEEEEEc
Confidence            999975332  22          22 4568999999998654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.02  E-value=2.5e-10  Score=102.07  Aligned_cols=106  Identities=21%  Similarity=0.251  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...++||+||||+|..+..++++.+..+++++|+ |++++.+++++....   ...|++++.+|..+.   .+..||+|+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~rv~~~~~D~~~~---~~~~~D~v~  151 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEP---LPRKADAII  151 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh---cccchhhccccchhh---cccchhhee
Confidence            5678999999999999999999888889999998 779999999876432   247999999997542   346799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +...-..  -+  .-....++++ ++++|+|||.+++.
T Consensus       152 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         152 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIH  184 (253)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred             ecccccc--CC--chhhHHHHHH-HHHhcCCCcEEEEE
Confidence            8754211  01  0012367888 79999999987764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=7.6e-10  Score=101.10  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      ..+..+||+||||.|+++..+++..+ .+|++|.++++-++.|++......   ...++++..+|.+++    +++||.|
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~~~~----~~~fD~i  131 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRI  131 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhhhcc----cccccce
Confidence            45678999999999999999888765 799999999999999998765332   257999999997533    5789988


Q ss_pred             EEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++=-. ...  +   .-.-..||+. +.+.|+|||.++++.
T Consensus       132 ~si~~~eh~--~---~~~~~~~~~~-~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         132 VSIGAFEHF--G---HERYDAFFSL-AHRLLPADGVMLLHT  166 (285)
T ss_dssp             EEESCGGGT--C---TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred             eeehhhhhc--C---chhHHHHHHH-HHhhcCCCCcEEEEE
Confidence            87533 221  1   1223579998 899999999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=2.4e-09  Score=94.64  Aligned_cols=149  Identities=15%  Similarity=0.194  Sum_probs=101.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--hhcCCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~~~~~~yD  177 (337)
                      .+..+||++|||+|+++..+++.- +..+|++||+++.+++.+++....      .+++..+..|+...-  ......+|
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------cCCceEEEEECCCcccccccccceE
Confidence            456899999999999999999873 467999999999999999886532      356778888875432  22346799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe--CCCCCcCCC-hhHHHHHHHHHhhhcCceeEEEeeccc
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGIFSH-TEVFSCIYNTLRQVFKYVVPYSAHIPS  254 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~--~~~p~~~~~-~~~~~~i~~~l~~vF~~v~~~~~~vP~  254 (337)
                      +|+.|.+.+.        ....+++. +++.|+|||.+++-  ..+...... ...++.+.+.+++-|..+..  ..+..
T Consensus       146 ~i~~d~~~~~--------~~~~~l~~-~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~--i~L~p  214 (227)
T d1g8aa_         146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER--LNLEP  214 (227)
T ss_dssp             EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE--EECTT
T ss_pred             EEEEEccccc--------hHHHHHHH-HHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE--EcCCC
Confidence            9999986543        23568888 79999999987763  222111122 23445555555555765443  23444


Q ss_pred             cCCceEEEEEec
Q 019699          255 FADTWGWIMASD  266 (337)
Q Consensus       255 ~~~~~~~~~as~  266 (337)
                      |.....+++|.|
T Consensus       215 ~~~~H~~vv~rK  226 (227)
T d1g8aa_         215 YEKDHALFVVRK  226 (227)
T ss_dssp             TSSSEEEEEEEC
T ss_pred             CCCceEEEEEEe
Confidence            544455677765

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=9.1e-10  Score=94.02  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvI  179 (337)
                      +..+|||+.+|+|+++.|++.+ +..+|+.||.|+..++..++++....  ..+...+++..|..++++..  ..+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhc--ccccccccccccccccccccccCCcccEE
Confidence            5679999999999999999986 57899999999999999999986432  23567899999999998754  4579999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~  219 (337)
                      ++|+|...      .++ .+.++.+. ...|+++|++++..
T Consensus       120 FlDPPY~~------~~~-~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         120 FLDPPFHF------NLA-EQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             EECCCSSS------CHH-HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EechhHhh------hhH-HHHHHHHHHhCCcCCCcEEEEEe
Confidence            99997422      222 23344312 35799999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=96.08  Aligned_cols=112  Identities=12%  Similarity=-0.038  Sum_probs=83.2

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc-------------CCCCCCCeEEEEccH
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-------------EAFSDPRLELVINDA  165 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~-------------~~~~d~rv~v~~~D~  165 (337)
                      ..+.+.+||++|||.|..+..+++.  ..+|++||+++.+++.|++..+...             ......+++++.+|.
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            3456789999999999999999986  3689999999999999988654210             011346899999998


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      .+.-......||+|+.-..-..  .+  .-....+++. +.++|+|||.+++
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l~~--~~--~~~r~~~~~~-~~~~LkpgG~~~l  166 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGALVA--IN--PGDRKCYADT-MFSLLGKKFQYLL  166 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSSTTT--SC--GGGHHHHHHH-HHHTEEEEEEEEE
T ss_pred             hhccccccCceeEEEEEEEEEe--cc--chhhHHHHHH-HHhhcCCcceEEE
Confidence            8876666688999987655322  11  1123467787 7999999997654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=2.2e-09  Score=92.95  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -++++||++|||+|.++.+++.. +..+|++||+|+..++.|++++...     +.+.+++.+|..++    .++||+||
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~-----~~~~~~~~~d~~~~----~~~fD~Vi  114 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIVI  114 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHc-----CCCceEEECchhhh----CCcCcEEE
Confidence            36789999999999999998875 4579999999999999999987653     35789999997654    57899999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHH
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      +|++...    ........|+..
T Consensus       115 ~nPP~~~----~~~~~d~~~l~~  133 (201)
T d1wy7a1         115 MNPPFGS----QRKHADRPFLLK  133 (201)
T ss_dssp             ECCCCSS----SSTTTTHHHHHH
T ss_pred             EcCcccc----ccccccHHHHHH
Confidence            9997432    122234566665

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=7.2e-10  Score=100.89  Aligned_cols=115  Identities=8%  Similarity=0.058  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv  178 (337)
                      ...++||+||||+|..+..+++.  ..+|++||+++++++.|++............+..+...|....-..  ..++||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            45689999999999999999986  3689999999999999998765321100011334444554433222  2478999


Q ss_pred             EEEeCC--CCCCCCCCcCC-chHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLA--DPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~--dp~~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-..  .... .+.... --..+++. +.++|+|||+|++..
T Consensus       133 v~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         133 VICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEECSSCGGGSC-CTTSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             EEEecCchhhcC-CcccChHHHHHHHHH-HHHHcCcCcEEEEee
Confidence            987432  1110 000001 12458898 899999999999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.6e-09  Score=96.24  Aligned_cols=108  Identities=12%  Similarity=0.109  Sum_probs=75.6

Q ss_pred             CeEEEEecchhHHHHHHHhc----CC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-----c
Q 019699          104 KTIFIMGGGEGSTAREILRH----KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----R  172 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~----~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-----~  172 (337)
                      .+||+||||+|.++..+++.    .+  ..++++||+++.+++.|++.+.... ....-++.++..++.++...     .
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccCC
Confidence            38999999999987776653    22  2368999999999999999875321 12223455667776665322     3


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .++||+|++-..-.+...      -..+++. +++.|+|||++++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d------~~~~l~~-l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD------IPATLKF-FHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC------HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCC------HHHHHHH-HHhhCCCCCEEEEEE
Confidence            578999998765322111      2478898 899999999887764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=2.6e-09  Score=93.59  Aligned_cols=103  Identities=25%  Similarity=0.307  Sum_probs=79.4

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ...+..+||+||+|+|..+..+++..+ .+|+++|+++.+++.|++.+...    .-.+++++.+|+.+-... ...||+
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~----g~~nv~~~~gd~~~g~~~-~~pfD~  148 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA----GVKNVHVILGDGSKGFPP-KAPYDV  148 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT----TCCSEEEEESCGGGCCGG-GCCEEE
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHc----CCceeEEEECccccCCcc-cCccee
Confidence            345678999999999999988777643 57999999999999999988653    247899999999764433 478999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      |++...-+.  -|          +. +.+.|+|||.+++-.+
T Consensus       149 Iiv~~a~~~--ip----------~~-l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         149 IIVTAGAPK--IP----------EP-LIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             EEECSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred             EEeeccccc--CC----------HH-HHHhcCCCCEEEEEEc
Confidence            999876432  23          12 3457999999988654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=3.4e-09  Score=91.61  Aligned_cols=91  Identities=19%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             HHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC
Q 019699           95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE  174 (337)
Q Consensus        95 ~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~  174 (337)
                      +.+.-.-++++||++|||+|.++..+++.. ..+|++||+|+..++.|+++.         ++++++.+|..+    .++
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~---------~~~~~~~~D~~~----l~~  106 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC---------GGVNFMVADVSE----ISG  106 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC---------TTSEEEECCGGG----CCC
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc---------ccccEEEEehhh----cCC
Confidence            334334468999999999999998888764 578999999999999999874         467899999654    457


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      +||+||+|++-.    .........|++.
T Consensus       107 ~fD~Vi~NPPfg----~~~~~~D~~fl~~  131 (197)
T d1ne2a_         107 KYDTWIMNPPFG----SVVKHSDRAFIDK  131 (197)
T ss_dssp             CEEEEEECCCC-----------CHHHHHH
T ss_pred             cceEEEeCcccc----hhhhhchHHHHHH
Confidence            899999998632    1122334677665

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.89  E-value=1.8e-09  Score=96.82  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ...++||+||||+|..+.++++.+|..+++++|+ |++++.+++.+....   ..+|++++.+|..+   ..+..||+|+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~---~~~ri~~~~~d~~~---~~p~~~D~v~  152 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFK---PLPVTADVVL  152 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTS---CCSCCEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC---Ccceeeeeeeeccc---cccccchhhh
Confidence            4568999999999999999999888889999998 889999999876432   25799999999654   3345799998


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-..-..  -+  .-....++++ +++.|+|||.+++.
T Consensus       153 ~~~vLh~--~~--d~~~~~lL~~-i~~~LkpgG~llI~  185 (256)
T d1qzza2         153 LSFVLLN--WS--DEDALTILRG-CVRALEPGGRLLVL  185 (256)
T ss_dssp             EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             ccccccc--cC--cHHHHHHHHH-HHhhcCCcceeEEE
Confidence            8754211  01  0012467888 79999999977764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.4e-09  Score=97.40  Aligned_cols=119  Identities=17%  Similarity=0.134  Sum_probs=82.2

Q ss_pred             hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH
Q 019699           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (337)
Q Consensus        87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~  166 (337)
                      .|.+++.+..-  .-+.++||+||||+|.++..+++. +..+|+++|+++.+..+++.. ..+.   ..++++++.+|..
T Consensus        22 ~y~~ai~~~~~--~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~-~~~~---~~~~i~~~~~~~~   94 (311)
T d2fyta1          22 SYRDFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDII-RLNK---LEDTITLIKGKIE   94 (311)
T ss_dssp             HHHHHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHH-HHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhccc--cCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHH-HHhC---CCccceEEEeeHH
Confidence            46666543211  135789999999999999999886 457999999999887654433 2221   2578999999987


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +. ....++||+|+++.....  .. ....-..+... ..+.|+|||+++.
T Consensus        95 ~l-~~~~~~~D~Ivse~~~~~--~~-~e~~~~~~~~a-~~~~Lkp~G~iip  140 (311)
T d2fyta1          95 EV-HLPVEKVDVIISEWMGYF--LL-FESMLDSVLYA-KNKYLAKGGSVYP  140 (311)
T ss_dssp             TS-CCSCSCEEEEEECCCBTT--BT-TTCHHHHHHHH-HHHHEEEEEEEES
T ss_pred             Hh-cCccccceEEEEeeeeee--cc-cccccHHHHHH-HHhcCCCCcEEec
Confidence            64 334578999999876432  11 12222345554 5788999998874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4.2e-09  Score=97.54  Aligned_cols=118  Identities=16%  Similarity=0.226  Sum_probs=82.9

Q ss_pred             hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH
Q 019699           87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR  166 (337)
Q Consensus        87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~  166 (337)
                      .|.+++....-.  -+.++||+||||+|.++..++++ +..+|+++|.++ +++.|++....+.   ...+++++.+|..
T Consensus        25 ~y~~aI~~~~~~--~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~---~~~~i~~i~~~~~   97 (328)
T d1g6q1_          25 SYRNAIIQNKDL--FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG---FSDKITLLRGKLE   97 (328)
T ss_dssp             HHHHHHHHHHHH--HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTT
T ss_pred             HHHHHHHhcccc--CCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC---ccccceEEEeehh
Confidence            456655432111  25689999999999999988886 467999999997 5677777665432   2578999999976


Q ss_pred             HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      +. ....++||+|+++.....  .. ..-.-..++.. .++.|+|||+++
T Consensus        98 ~l-~~~~~~~D~i~se~~~~~--~~-~e~~~~~~~~a-~~r~LkpgG~ii  142 (328)
T d1g6q1_          98 DV-HLPFPKVDIIISEWMGYF--LL-YESMMDTVLYA-RDHYLVEGGLIF  142 (328)
T ss_dssp             TS-CCSSSCEEEEEECCCBTT--BS-TTCCHHHHHHH-HHHHEEEEEEEE
T ss_pred             hc-cCcccceeEEEEEeccee--ec-cchhHHHHHHH-HHhccCCCeEEE
Confidence            64 223578999999876432  11 12223445665 688999999986

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=9.5e-10  Score=94.58  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ..+||+||||+|.++..+.      ++++||+++.+++.|++.           +++++.+|+.+. .-.+++||+|++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-~~~~~~fD~I~~~   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------cccccccccccc-ccccccccccccc
Confidence            4589999999999887763      368999999999999862           578999998654 2335789999987


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..-.....      -..+++. ++++|+|||.+++..
T Consensus        99 ~~l~h~~d------~~~~l~~-~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVDD------PERALKE-AYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cccccccc------cccchhh-hhhcCCCCceEEEEe
Confidence            65222111      2468898 899999999988875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=2.3e-09  Score=94.39  Aligned_cols=106  Identities=21%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc------CCCcEEEEEECChHHHHHHHhhhhhcc-CCCCCCCeEEEEccHHHHHhhcC
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH------KTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRK  173 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~------~~~~~v~~VEid~~vi~~a~~~f~~~~-~~~~d~rv~v~~~D~~~~l~~~~  173 (337)
                      .+..+||+||+|+|..+.-+++.      .+..+|++||+++++++.|++++.... ....-.++.++.+|+.+-... .
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-~  157 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N  157 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-c
Confidence            45689999999999987666653      123589999999999999998764210 001235899999999875433 4


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ..||+|+++..-+.  -|          +. +.+.|+|||.+++-.+
T Consensus       158 ~~fD~Iiv~~a~~~--~p----------~~-l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         158 APYNAIHVGAAAPD--TP----------TE-LINQLASGGRLIVPVG  191 (223)
T ss_dssp             CSEEEEEECSCBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred             cceeeEEEEeechh--ch----------HH-HHHhcCCCcEEEEEEe
Confidence            68999999886432  23          12 4568999999988654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.8e-09  Score=97.46  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=77.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      +.++||+||||+|.++..+++. +..+|++||+++.+ ..+++....+.   -..+++++.+|..+. ....++||+|++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~---~~~~v~~~~~~~~~~-~~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhC---CccccceEeccHHHc-ccccceeEEEee
Confidence            5689999999999999998886 46789999999865 55555444332   246899999998764 333578999999


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      +.....   ....-.-.+++.. +++.|+|||.++.
T Consensus       107 ~~~~~~---l~~e~~~~~~l~~-~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYC---LFYESMLNTVLHA-RDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBT---BTBTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred             eeeeee---eccHHHHHHHHHH-HHhcCCCCeEEEe
Confidence            876322   1122223567776 7899999998864

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.7e-08  Score=90.14  Aligned_cols=171  Identities=11%  Similarity=0.041  Sum_probs=105.0

Q ss_pred             ceEEEEcCccccccCC-hhhHHHHHHhHHHhc---CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699           69 GKALVIDGKLQSAEVD-EFIYHESLVHPALLH---HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS  144 (337)
Q Consensus        69 G~~L~lDG~~q~~~~d-e~~Y~e~l~~~~l~~---~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~  144 (337)
                      |.-+.++........+ +..|-+.+..+....   ..+..++|+||+|+|+++..+++..+..+++++|||++.++.|++
T Consensus        24 gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~  103 (250)
T d2h00a1          24 GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK  103 (250)
T ss_dssp             CCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             CceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHH
Confidence            4334444444444322 345666555432111   133569999999999999998887667899999999999999999


Q ss_pred             hhhhccCCCCCCCeEEEEccHHHHHhh-----cCCceeEEEEeCCCCC-CC-------------CCC-------cCCch-
Q 019699          145 YLVVNKEAFSDPRLELVINDARAELES-----RKESYDVIIGDLADPI-EG-------------GPC-------YKLYT-  197 (337)
Q Consensus       145 ~f~~~~~~~~d~rv~v~~~D~~~~l~~-----~~~~yDvIi~D~~dp~-~~-------------~p~-------~~L~t-  197 (337)
                      +...+.   -..|+.++..+....+..     ..++||+|++++|.-. ..             .|.       ..|++ 
T Consensus       104 N~~~n~---l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~  180 (250)
T d2h00a1         104 NVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE  180 (250)
T ss_dssp             HHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHH
T ss_pred             HHHHhC---CCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccc
Confidence            987653   256888888765544322     2467999999998321 00             011       11211 


Q ss_pred             ---HHHHHHHh---ccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699          198 ---KSFYEFVV---KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY  248 (337)
Q Consensus       198 ---~ef~~~~~---~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~  248 (337)
                         ..|++.++   ...++..|.+....+.      .+.+..+.+.|++. |.++...
T Consensus       181 gGe~~F~~~ii~es~~~~~~~g~~t~~ig~------~~~l~~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         181 GGELEFVKRIIHDSLQLKKRLRWYSCMLGK------KCSLAPLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             HTHHHHHHHHHHHHHHHGGGBSCEEEEESS------TTSHHHHHHHHHHTTCSEEEEE
T ss_pred             cchhhHHHHHHHHHHHHhhcCcEEEEEecc------hhhHHHHHHHHHHcCCCeEEEE
Confidence               13555422   4568899998766542      23344555566544 5665543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=1.2e-07  Score=81.39  Aligned_cols=115  Identities=27%  Similarity=0.274  Sum_probs=85.7

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---HHhhc-CC
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELESR-KE  174 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---~l~~~-~~  174 (337)
                      ...+...+||+++|+|+.+..+++..+..+|+++|.|+++++.|++.+...     ..|++++.++..+   ++... .+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~~r~~~~~~~f~~~~~~~~~~~~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREADFLLKTLGIE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----cccccchhHHHhhHHHHHHHcCCC
Confidence            334568999999999999999999767789999999999999999987643     4689999987644   34443 37


Q ss_pred             ceeEEEEeCCCCC--CCCCC-cCCchHHHHHHHhccccCCCceEEEeC
Q 019699          175 SYDVIIGDLADPI--EGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       175 ~yDvIi~D~~dp~--~~~p~-~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ++|.|+.|+.-..  -..+. ..-+..+++.. +.+.|+|||.+++-.
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~-a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKK-AEDLLNPGGRIVVIS  141 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHH-GGGGEEEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHH-HHHhcCCCCeeeeec
Confidence            8999999974210  00110 11234567787 789999999887643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.1e-08  Score=90.22  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCC-----------------------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-----------------------  157 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~r-----------------------  157 (337)
                      .++++||+||||+|..+..+++. ...+|+++|+++.+++.|+++.......+...+                       
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            35678999999999887666554 346899999999999999998753221110000                       


Q ss_pred             --e-EEEEccHH--HHH-hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          158 --L-ELVINDAR--AEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       158 --v-~v~~~D~~--~~l-~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                        + .....+..  ..+ ....++||+|++-..-..  .+...-.-..+++. +.+.|+|||.+++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~--~~~~~~~~~~~l~~-i~~~LkpGG~li~~  192 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC--ACCSLDAYRAALCN-LASLLKPGGHLVTT  192 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHH--hcccHHHHHHHHHH-HHhccCCCcEEEEE
Confidence              0 00000000  000 012467999998653111  00000112357788 79999999998874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=3.7e-08  Score=92.93  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=87.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-----------CCCCCeEEEEccHHHHHh
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------FSDPRLELVINDARAELE  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-----------~~d~rv~v~~~D~~~~l~  170 (337)
                      ++++||+..+|+|..+...++.-+..+|+++|+|+..++.+++++..+...           .....+.+...|+..++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            678999999999999886666556789999999999999999998765311           123468899999999998


Q ss_pred             hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ..+++||+|.+|++-    .|      ..|++. +-+.++.||++++-+
T Consensus       125 ~~~~~fDvIDiDPfG----s~------~pflds-Ai~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDPFG----SP------MEFLDT-ALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCCCC----Cc------HHHHHH-HHHHhccCCEEEEEe
Confidence            888899999999862    22      368887 778899999998764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.9e-08  Score=88.99  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-----cCCCCCCCeEEEEccHHHHH-hhcC
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAEL-ESRK  173 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~d~rv~v~~~D~~~~l-~~~~  173 (337)
                      ..+...||+||||+|.++..+++..+..++++||+++.+++.|++.....     .......+++++.+|+.+.- .+..
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~  228 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  228 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence            45668999999999999999988777789999999999999998764321     01134578999999986431 1111


Q ss_pred             CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ...|+|++...-.   .+  .+  ...+.. +.+.|+|||.+++..
T Consensus       229 ~~advi~~~~~~f---~~--~~--~~~l~e-~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         229 ANTSVIFVNNFAF---GP--EV--DHQLKE-RFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHCSEEEECCTTT---CH--HH--HHHHHH-HHTTCCTTCEEEESS
T ss_pred             CcceEEEEcceec---ch--HH--HHHHHH-HHHhCCCCcEEEEec
Confidence            2368999875422   11  11  245666 678999999998753

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.40  E-value=5.4e-07  Score=79.47  Aligned_cols=101  Identities=18%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||+|.|.++..+++.  ..+|++||+|+.+++..++.+..      .++++++.+|+.++--. ......|+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~------~~n~~i~~~D~l~~~~~-~~~~~~vv   90 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFP-KNQSYKIF   90 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCC-SSCCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc------ccchhhhhhhhhhcccc-ccccceee
Confidence            56789999999999999999986  36899999999999999987643      47999999999876211 23344677


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+++.        ...|. .+..++....-+..++++|-
T Consensus        91 ~NLPY--------nIss~-il~~ll~~~~~~~~vlm~Qk  120 (235)
T d1qama_          91 GNIPY--------NISTD-IIRKIVFDSIADEIYLIVEY  120 (235)
T ss_dssp             EECCG--------GGHHH-HHHHHHHSCCCSEEEEEEEH
T ss_pred             eeehh--------hhhHH-HHHHHHhhhhhhhhhhhhhH
Confidence            78753        22233 23332333333445677774

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.4e-06  Score=82.61  Aligned_cols=110  Identities=12%  Similarity=0.045  Sum_probs=73.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc-----CCCCCCCeEEE-EccHH--HHHhhc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAFSDPRLELV-INDAR--AELESR  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~-----~~~~d~rv~v~-~~D~~--~~l~~~  172 (337)
                      .+..+|||||||.|.++..+++..+.+++++||+++.+++.|++......     .........+. .+|..  .+....
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            55679999999999999999987777799999999999999998643210     01112233432 23221  222222


Q ss_pred             CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      -...|+|+++....   .+  .+  ...+.. +.+.|+|||.+++-
T Consensus       295 ~~~adVV~inn~~f---~~--~l--~~~L~e-i~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLF---DE--DL--NKKVEK-ILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTC---CH--HH--HHHHHH-HHTTCCTTCEEEES
T ss_pred             cccceEEEEecccC---ch--HH--HHHHHH-HHHhcCCCcEEEEe
Confidence            35689999875422   11  11  345667 68999999988763

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=1.6e-06  Score=79.47  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~  175 (337)
                      .++.+||+.|||+|+++.++.++     ....++.++|+|+.++++|+......     .....+..+|....  ....+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~--~~~~~  188 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-----RQKMTLLHQDGLAN--LLVDP  188 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-----TCCCEEEESCTTSC--CCCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-----hhhhhhhccccccc--ccccc
Confidence            45678999999999999887643     23347999999999999999887654     24567777775432  23478


Q ss_pred             eeEEEEeCCCCCCC------------CCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699          176 YDVIIGDLADPIEG------------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       176 yDvIi~D~~dp~~~------------~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      ||+|++++|-....            .........-|++. +.+.|+|+|.+++-...  .+........+.+.|.+.|.
T Consensus       189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~~I~p~--~~l~~~~~~~lR~~L~~~~~  265 (328)
T d2f8la1         189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLVPD--AMFGTSDFAKVDKFIKKNGH  265 (328)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEEEG--GGGGSTTHHHHHHHHHHHEE
T ss_pred             ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHH-HHHhcCCCCceEEEecC--ccccCchhHHHHHHHHhCCc
Confidence            99999999732100            00001112347887 78999999976543311  13334445556666666664


Q ss_pred             c
Q 019699          244 Y  244 (337)
Q Consensus       244 ~  244 (337)
                      .
T Consensus       266 i  266 (328)
T d2f8la1         266 I  266 (328)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.6e-08  Score=87.57  Aligned_cols=114  Identities=14%  Similarity=0.078  Sum_probs=67.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCC------------------------
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP------------------------  156 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~------------------------  156 (337)
                      ..+++||+||||+|..+...+.. ...+|+++|+++.+++.+++++......++-.                        
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            45789999999999765433332 24689999999999999999875322221100                        


Q ss_pred             -C-eEEEEccHHH-----HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          157 -R-LELVINDARA-----ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       157 -r-v~v~~~D~~~-----~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       . ..+...|..+     -......+||+|++-..-..  .+...---..++++ +.++|+|||+|++.
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~--i~~~~~~~~~~l~~-~~~~LkPGG~li~~  197 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VSPDLASFQRALDH-ITTLLRPGGHLLLI  197 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHH--HccCHHHHHHHHHH-HHHHcCCCCEEEEe
Confidence             0 1122222210     00111357999998654211  00000001356777 78999999999864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=2e-06  Score=76.07  Aligned_cols=98  Identities=21%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +..++|||||||.|..+.++++.+|..++++.|+ |.+++.+          ...+|++++.+|.++   .. ...|+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----------~~~~ri~~~~gd~~~---~~-p~~D~~~  144 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----------PPLSGIEHVGGDMFA---SV-PQGDAMI  144 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----------CCCTTEEEEECCTTT---CC-CCEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----------CCCCCeEEecCCccc---cc-ccceEEE
Confidence            4568999999999999999999888899999998 6665422          124799999999653   22 3569988


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +-..-..  -+  .-.....++. +++.|+|||.+++.
T Consensus       145 l~~vLh~--~~--de~~~~iL~~-~~~aL~pgg~llI~  177 (244)
T d1fp1d2         145 LKAVCHN--WS--DEKCIEFLSN-CHKALSPNGKVIIV  177 (244)
T ss_dssp             EESSGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred             Eehhhhh--CC--HHHHHHHHHH-HHHHcCCCcEEEEE
Confidence            7654211  11  1113467888 78999999977664

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.8e-06  Score=77.04  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD  177 (337)
                      ....+|||+.||.|.++..+++.  ..+|++||+++..++.|+++...++    -.+++++.+|..+.+...   ...||
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~----i~n~~~~~~~~~~~~~~~~~~~~~~d  284 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD  284 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcc----cccceeeecchhhhhhhhhhhhccCc
Confidence            45678999999999999999875  4799999999999999999977653    358999999988776443   46799


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +||+|++-.   |.      .+..+. +. .++|.=++.+.+
T Consensus       285 ~vilDPPR~---G~------~~~~~~-l~-~~~~~~ivYVSC  315 (358)
T d1uwva2         285 KVLLDPARA---GA------AGVMQQ-II-KLEPIRIVYVSC  315 (358)
T ss_dssp             EEEECCCTT---CC------HHHHHH-HH-HHCCSEEEEEES
T ss_pred             eEEeCCCCc---cH------HHHHHH-HH-HcCCCEEEEEeC
Confidence            999998732   32      235555 33 346766666654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=6e-06  Score=70.52  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCc
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES  175 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~  175 (337)
                      ++..++..+||+.|||+|.++..+.+. .....+.++|+|+..+++             ..+..++.+|...+.  ...+
T Consensus        14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~   78 (223)
T d2ih2a1          14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL-------------PPWAEGILADFLLWE--PGEA   78 (223)
T ss_dssp             HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC-------------CTTEEEEESCGGGCC--CSSC
T ss_pred             hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh-------------cccceeeeeehhccc--cccc
Confidence            444567789999999999998887753 556789999999865432             245678888865543  3478


Q ss_pred             eeEEEEeCCCCCC---CC-CC-------------------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHH
Q 019699          176 YDVIIGDLADPIE---GG-PC-------------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS  232 (337)
Q Consensus       176 yDvIi~D~~dp~~---~~-p~-------------------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~  232 (337)
                      ||+|+.+++....   .. +.                   ..-....|++. +.+.|++||.+++=..+  .+......+
T Consensus        79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-al~~lk~~G~~~~I~p~--~~l~~~~~~  155 (223)
T d2ih2a1          79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVPA--TWLVLEDFA  155 (223)
T ss_dssp             EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEEG--GGGTCGGGH
T ss_pred             cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHH-HHHhcccCCceEEEEee--eeccCcchH
Confidence            9999999873210   00 00                   00012457777 67899999987654321  144444445


Q ss_pred             HHHHHHhhhc
Q 019699          233 CIYNTLRQVF  242 (337)
Q Consensus       233 ~i~~~l~~vF  242 (337)
                      .+.+.|.+.+
T Consensus       156 ~lR~~l~~~~  165 (223)
T d2ih2a1         156 LLREFLAREG  165 (223)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhcC
Confidence            5555555554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.01  E-value=3.6e-07  Score=81.18  Aligned_cols=101  Identities=15%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+||+||+|.|.++..+++.  ..+|++||+|+.+++.+++.++.      .++++++.+|+.++ .-....++.|+
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~-~~~~~~~~~vv   98 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQF-QFPNKQRYKIV   98 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTT-TCCCSSEEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh------ccchhhhhhhhhcc-ccccceeeeEe
Confidence            45678999999999999999987  36899999999999888776642      47899999999875 22335677888


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+++..        ..|.=.+.. +..---.+.++++|-
T Consensus        99 ~NLPY~--------Ist~il~~~-l~~~~~~~~v~m~Qk  128 (245)
T d1yuba_          99 GNIPYH--------LSTQIIKKV-VFESRASDIYLIVEE  128 (245)
T ss_dssp             EECCSS--------SCHHHHHHH-HHHCCCEEEEEEEES
T ss_pred             eeeehh--------hhHHHHHHH-hhhchhhhhhhhhhh
Confidence            888643        223323332 332222345777774

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.8e-05  Score=70.01  Aligned_cols=142  Identities=17%  Similarity=0.095  Sum_probs=92.3

Q ss_pred             HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699           97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus        97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      ++......+|||+++|-|+=+..++......+|+++|+++.=++..++.+...+    -+.+.+...|....-.....+|
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g----~~~~~~~~~~~~~~~~~~~~~f  172 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCGEQQF  172 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHTTCCE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc----ccceeeeccccccchhcccccc
Confidence            334456689999999999988787776555789999999999988888775432    2345555555432222335789


Q ss_pred             eEEEEeCC-CCCC---CCCCc------------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          177 DVIIGDLA-DPIE---GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       177 DvIi~D~~-dp~~---~~p~~------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      |.|++|++ +...   ..|..            .-...+.++. +.+.|+|||.+|--+.+.    .++.-+.+++.+-+
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lk~gG~lvYsTCS~----~~~ENE~vv~~~l~  247 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCSV----LPEENSLQIKAFLQ  247 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESCC----CGGGTHHHHHHHHH
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHH-HHHhcCCCceEEEeeecC----chhhCHHHHHHHHH
Confidence            99999997 2210   01110            0113556777 678999999988665432    34444556665555


Q ss_pred             hcCceeE
Q 019699          241 VFKYVVP  247 (337)
Q Consensus       241 vF~~v~~  247 (337)
                      -++....
T Consensus       248 ~~~~~~~  254 (284)
T d1sqga2         248 RTADAEL  254 (284)
T ss_dssp             HCTTCEE
T ss_pred             hCCCcEE
Confidence            5665543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.99  E-value=3.2e-06  Score=74.75  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ..++||+||||+|..+.++++.+|..++++.|+ |.+++.+.          ..+|++++.+|..+   . ...+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~rv~~~~gD~f~---~-~p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS----------GSNNLTYVGGDMFT---S-IPNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CBTTEEEEECCTTT---C-CCCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc----------ccCceEEEecCccc---C-CCCCcEEEE
Confidence            457899999999999999999888899999999 66665321          25799999999654   2 346899987


Q ss_pred             eCCC-CCCCCCCcCCchHHHHHHHhccccCCC---ceEEE
Q 019699          182 DLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVT  217 (337)
Q Consensus       182 D~~d-p~~~~p~~~L~t~ef~~~~~~~~L~p~---Gvlv~  217 (337)
                      -..- .+   +  .-.....+++ +++.|+||   |.+++
T Consensus       145 ~~vLHdw---~--d~~~~~iL~~-~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         145 KYILHNW---T--DKDCLRILKK-CKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             ESCGGGS---C--HHHHHHHHHH-HHHHHSGGGCCCEEEE
T ss_pred             EeecccC---C--hHHHHHHHHH-HHHHcCcccCCcEEEE
Confidence            6542 12   1  1123468888 79999998   54544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2e-05  Score=70.84  Aligned_cols=76  Identities=18%  Similarity=0.378  Sum_probs=61.6

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+...||+||.|.|.+++.+++..  .+|++||+|+.+++..++.+....   ...+++++.+|+.++   ....++.||
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~---~~~~~~~i~~D~l~~---~~~~~~~vV   91 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV   91 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhc---cccchhhhHHHHhhh---hhhhhhhhh
Confidence            456789999999999999999973  699999999999999998775421   246899999998765   224567888


Q ss_pred             EeCC
Q 019699          181 GDLA  184 (337)
Q Consensus       181 ~D~~  184 (337)
                      .+++
T Consensus        92 ~NLP   95 (278)
T d1zq9a1          92 ANLP   95 (278)
T ss_dssp             EECC
T ss_pred             cchH
Confidence            8875

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.88  E-value=1.5e-05  Score=70.45  Aligned_cols=85  Identities=16%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC-----CCCeEEEEccHHHHHhhcCCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----d~rv~v~~~D~~~~l~~~~~~  175 (337)
                      ..+.+|||+-+|.|.-+..++...  .+|++||-+|.+..+.+..+........     -.|++++.+|+.+|+++....
T Consensus        87 ~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~  164 (250)
T d2oyra1          87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR  164 (250)
T ss_dssp             TBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSC
T ss_pred             CCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCC
Confidence            334589999999999999998863  6899999999999888876642110000     138999999999999987788


Q ss_pred             eeEEEEeCCCCC
Q 019699          176 YDVIIGDLADPI  187 (337)
Q Consensus       176 yDvIi~D~~dp~  187 (337)
                      ||+|++|+..|.
T Consensus       165 ~DvIYlDPMFp~  176 (250)
T d2oyra1         165 PQVVYLDPMFPH  176 (250)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCCCcc
Confidence            999999997654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.84  E-value=1.1e-05  Score=70.72  Aligned_cols=111  Identities=18%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHh----cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE
Q 019699           86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV  161 (337)
Q Consensus        86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~----~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~  161 (337)
                      ..|++.+-.      -+|++||+||.+.|+.+..++.    .....+|+++|||+.......         ...+|++++
T Consensus        70 ~~~~eli~~------~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---------~~~~~I~~i  134 (232)
T d2bm8a1          70 AVYHDMLWE------LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---------SDMENITLH  134 (232)
T ss_dssp             HHHHHHHHH------HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---------GGCTTEEEE
T ss_pred             HHHHHHHHH------hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---------ccccceeee
Confidence            456665442      3789999999999988765543    234679999999985332211         135799999


Q ss_pred             EccHH--HHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          162 INDAR--AELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       162 ~~D~~--~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .+|..  +.+... ...+|+||+|.....  .  ..+  .++ .  +...|++||++++.-.
T Consensus       135 ~gDs~~~~~~~~l~~~~~dlIfID~~H~~--~--~v~--~~~-~--~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         135 QGDCSDLTTFEHLREMAHPLIFIDNAHAN--T--FNI--MKW-A--VDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             ECCSSCSGGGGGGSSSCSSEEEEESSCSS--H--HHH--HHH-H--HHHTCCTTCEEEECSC
T ss_pred             ecccccHHHHHHHHhcCCCEEEEcCCcch--H--HHH--HHH-H--HhcccCcCCEEEEEcC
Confidence            99974  334332 346899999975321  0  111  122 2  2458999999998643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.0001  Score=63.15  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      -++++++|||+|+|--+.-++-..|..+++.||.+..=++..++-....    +-++++++.+.+.++.  ...+||+|+
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~~~--~~~~fD~V~  137 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVI  137 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEE
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc----CCcceeeeccchhhhc--cccccceeh
Confidence            3567999999999965555554456789999999999888777654322    2357999999887653  246799999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      +-++.+.          ..+... +...++++|.+++.-|.
T Consensus       138 sRA~~~~----------~~ll~~-~~~~l~~~g~~~~~KG~  167 (207)
T d1jsxa_         138 SRAFASL----------NDMVSW-CHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CSCSSSH----------HHHHHH-HTTSEEEEEEEEEEESS
T ss_pred             hhhhcCH----------HHHHHH-HHHhcCCCcEEEEECCC
Confidence            8876432          356665 78999999999887653

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=7.5e-06  Score=72.68  Aligned_cols=75  Identities=13%  Similarity=0.277  Sum_probs=58.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-----HhhcCCc
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LESRKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-----l~~~~~~  175 (337)
                      .+...||+||+|.|.++..+++..  .+|++||+|+.+++..++.+..      +++++++.+|+.++     .....+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~~~~ii~~D~l~~~~~~~~~~~~~~   91 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMGQP   91 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh------ccchhHHhhhhhhhcccccccccCCC
Confidence            457899999999999999999863  6899999999999998875432      47999999999864     2222333


Q ss_pred             eeEEEEeCC
Q 019699          176 YDVIIGDLA  184 (337)
Q Consensus       176 yDvIi~D~~  184 (337)
                      | .|+.+++
T Consensus        92 ~-~vvgNlP   99 (252)
T d1qyra_          92 L-RVFGNLP   99 (252)
T ss_dssp             E-EEEEECC
T ss_pred             e-EEEecch
Confidence            4 6777875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.80  E-value=7.2e-06  Score=72.17  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=67.0

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ..++||+||||.|..+.++++.+|..+++++|+-+ +++.+          ...+|++.+.+|..+-+   + ..|++++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~----------~~~~r~~~~~~d~~~~~---P-~ad~~~l  145 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA----------PSYPGVEHVGGDMFVSI---P-KADAVFM  145 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC----------CCCTTEEEEECCTTTCC---C-CCSCEEC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc----------ccCCceEEecccccccC---C-CcceEEE
Confidence            35789999999999999999988899999999944 44322          23579999999965422   2 3455444


Q ss_pred             eCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       182 D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      -.. ..+   +  .-.....+++ ++++|+|||.+++.
T Consensus       146 ~~vlh~~---~--d~~~~~iL~~-~~~al~pgg~~li~  177 (243)
T d1kyza2         146 KWICHDW---S--DEHCLKFLKN-CYEALPDNGKVIVA  177 (243)
T ss_dssp             SSSSTTS---C--HHHHHHHHHH-HHHHCCSSSCEEEE
T ss_pred             EEEeecC---C--HHHHHHHHHH-HHHhcCCCceEEEE
Confidence            222 212   1  1123468888 79999999976664

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=0.00041  Score=60.57  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=94.3

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI  179 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDvI  179 (337)
                      ..++++|||.|+|-=+.-++-..|..+++.||-+..=++..+.-....    .=.+++++.+.+.++-..  ..++||+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----CCCCcEEEeehhhhccccccccccceEE
Confidence            568999999999954444433346789999999998777665543211    125789999998877543  24689999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce-eEEEeeccccCCc
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV-VPYSAHIPSFADT  258 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v-~~~~~~vP~~~~~  258 (337)
                      ++-+..+.          ..+++. +...++++|.+++.-|..    ..+.+....+.++.....+ ......+|...+.
T Consensus       146 ~sRAva~l----------~~ll~~-~~~~l~~~g~~i~~KG~~----~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~  210 (239)
T d1xdza_         146 TARAVARL----------SVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTLGGELENIHSFKLPIEESD  210 (239)
T ss_dssp             EEECCSCH----------HHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCE
T ss_pred             EEhhhhCH----------HHHHHH-HhhhcccCCEEEEECCCC----hHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCC
Confidence            99987432          246665 789999999998876532    2344555555555443222 2333456766554


Q ss_pred             eEEEEEec
Q 019699          259 WGWIMASD  266 (337)
Q Consensus       259 ~~~~~as~  266 (337)
                      -.+++-.|
T Consensus       211 r~lv~i~K  218 (239)
T d1xdza_         211 RNIMVIRK  218 (239)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            44555543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=8.2e-05  Score=62.39  Aligned_cols=125  Identities=22%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH------hh-c
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------ES-R  172 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l------~~-~  172 (337)
                      .+..+||+||++.|++...++++ .+...|.+||+.+.           .    .-+.+.++.+|....-      .. .
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~----~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D----PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C----CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c----ccCCceEeecccccchhhhhhhhhcc
Confidence            56679999999999999988875 45578999998661           0    1357788888874321      11 2


Q ss_pred             CCceeEEEEeCCCCCCCCCCc-------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699          173 KESYDVIIGDLADPIEGGPCY-------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV  245 (337)
Q Consensus       173 ~~~yDvIi~D~~dp~~~~p~~-------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v  245 (337)
                      ..++|+|++|..-.. .+...       .|...++ .. +.+.|++||.+++-.     + +.+....+...|+..|..|
T Consensus        86 ~~~~DlVlSD~ap~~-sg~~~~d~~~~~~L~~~~l-~~-a~~~Lk~gG~fV~K~-----F-~g~~~~~l~~~l~~~F~~V  156 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNM-SGTPAVDIPRAMYLVELAL-EM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKV  156 (180)
T ss_dssp             TCCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHH-HH-HHHHEEEEEEEEEEE-----E-SSTTHHHHHHHHHHHEEEE
T ss_pred             CcceeEEEecccchh-cccchhHHHHHHHHHHHHH-Hh-hhhccCCCCcEEEEE-----e-cCccHHHHHHHHHhhcCEE
Confidence            478999999986322 22110       1222222 22 358899999999874     2 2334567888999999998


Q ss_pred             eEEE
Q 019699          246 VPYS  249 (337)
Q Consensus       246 ~~~~  249 (337)
                      ..+.
T Consensus       157 ~~~K  160 (180)
T d1ej0a_         157 KVRK  160 (180)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=0.00015  Score=60.88  Aligned_cols=109  Identities=28%  Similarity=0.249  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---Hhhc-CCc
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR-KES  175 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~-~~~  175 (337)
                      ..+...++|..+|.|+-++++++.  ..+|.++|.||++++.|++.        .++|+.++.+...++   +... .++
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~--------~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL--------HLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT--------CCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc--------cccceeEeehHHHHHHHHHHHcCCCc
Confidence            356678999999999999999996  36899999999999999874        247899988876543   3332 367


Q ss_pred             eeEEEEeCCCCC--CCCCCcCC-chHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPI--EGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~--~~~p~~~L-~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|.|+.|+.-..  ...|...+ +....+.. ..+.|++||.+++..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~-~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQ-AAEVLAPGGRLVVIA  131 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHH-HHhhhCCCCeEEEEe
Confidence            999999984110  00111111 12335665 578899999988764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.59  E-value=0.0003  Score=63.87  Aligned_cols=134  Identities=14%  Similarity=0.070  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .....+|||+++|.|+=+..++.. .....++++|+++.=++..++.+....    -.++.+...|+..+ ......||.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----~~~i~~~~~d~~~~-~~~~~~fD~  188 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHI-GELNVEFDK  188 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGG-GGGCCCEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----hhcccccccccccc-ccccccccE
Confidence            345679999999999977666654 335689999999999998888775432    35788888888765 344678999


Q ss_pred             EEEeCC-CCCC---CCCCc--C----------CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699          179 IIGDLA-DPIE---GGPCY--K----------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF  242 (337)
Q Consensus       179 Ii~D~~-dp~~---~~p~~--~----------L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF  242 (337)
                      |++|++ +...   ..|..  .          -...+.++. +.+.|+|||.+|--+.+-    .++.-..+++.+-+.+
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lk~gG~lVYsTCSl----~~eENE~VV~~~L~~~  263 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCSL----EPEENEFVIQWALDNF  263 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESCC----CGGGTHHHHHHHHHHS
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHh-hhheeCCCcEEEEeeccC----ChHhHHHHHHHHHhcC
Confidence            999998 2221   01210  0          112445666 578899999887655432    3333344445444444


Q ss_pred             C
Q 019699          243 K  243 (337)
Q Consensus       243 ~  243 (337)
                      +
T Consensus       264 ~  264 (313)
T d1ixka_         264 D  264 (313)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.51  E-value=0.00017  Score=60.84  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEEecchhHHH----HHHHhc----CCCcEEEEEECChHHHHHHHhh------------------hhhccCC
Q 019699           99 HHPNPKTIFIMGGGEGSTA----REILRH----KTVEKVVMCDIDEEVVEFCKSY------------------LVVNKEA  152 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~----~~ll~~----~~~~~v~~VEid~~vi~~a~~~------------------f~~~~~~  152 (337)
                      .+..+-||+.+|||+|.-+    ..+...    ...-+|++.|||+.+++.|++-                  |....  
T Consensus        21 ~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~--   98 (193)
T d1af7a2          21 RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT--   98 (193)
T ss_dssp             HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC--
T ss_pred             ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecC--
Confidence            3466779999999999743    323322    1234799999999999999852                  21100  


Q ss_pred             CCCCCeEEEEccH-HHHH--------h---hcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          153 FSDPRLELVINDA-RAEL--------E---SRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       153 ~~d~rv~v~~~D~-~~~l--------~---~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                       ..........+. +..+        .   ...++||+|++--- .-.  .+   -.....++. +.++|+|||+|++-
T Consensus        99 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf--~~---~~~~~vl~~-l~~~L~pGG~L~lG  170 (193)
T d1af7a2          99 -GPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF--DK---TTQEDILRR-FVPLLKPDGLLFAG  170 (193)
T ss_dssp             -TTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS--CH---HHHHHHHHH-HGGGEEEEEEEEEC
T ss_pred             -CCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence             011122222211 1111        0   11367999998532 111  00   112467787 79999999998864

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.0012  Score=59.10  Aligned_cols=134  Identities=14%  Similarity=0.019  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD  177 (337)
                      ....+||++++|.|+-+..++.. .+..+|+++|+++.=++..++++...+    -.++++...|+..+-...  ..+||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g----~~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC----ccceeeeehhhhhhcccccccceee
Confidence            44678999999999977666643 345789999999999999999876432    367999999987653322  36799


Q ss_pred             EEEEeCCCCCCC----CCCc------------CC--chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHh
Q 019699          178 VIIGDLADPIEG----GPCY------------KL--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR  239 (337)
Q Consensus       178 vIi~D~~dp~~~----~p~~------------~L--~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~  239 (337)
                      .|++|++-...+    .|..            .|  .....+.. +. .|++||.++--+.+.    .++.-..+++.+-
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~-a~-~l~~gG~lvYsTCSl----~~~ENe~vV~~~L  242 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-AL-TFPSLQRLVYSTCSL----CQEENEDVVRDAL  242 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHH-HT-TCTTCCEEEEEESCC----CGGGTHHHHHHHH
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHH-hh-hcccccEEEEeeccC----ChhHhHHHHHHHH
Confidence            999999721110    0100            01  11223333 23 479999877554432    3444456666655


Q ss_pred             hhcCc
Q 019699          240 QVFKY  244 (337)
Q Consensus       240 ~vF~~  244 (337)
                      +-+|.
T Consensus       243 ~~~~~  247 (293)
T d2b9ea1         243 QQNPG  247 (293)
T ss_dssp             TTSTT
T ss_pred             HhCCC
Confidence            55554

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.47  E-value=7.3e-05  Score=70.72  Aligned_cols=137  Identities=15%  Similarity=0.066  Sum_probs=88.1

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCC-------------CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKT-------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA  167 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~-------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~  167 (337)
                      ....+||+-.||+|+++.++.++-.             ...+.++|+|+....+|+.++-.+.  ...++.++..+|...
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g--~~~~~~~i~~~d~l~  238 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG--IGTDRSPIVCEDSLE  238 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT--CCSSCCSEEECCTTT
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC--CccccceeecCchhh
Confidence            4568999999999999988776421             1248999999999999998876543  234566788888653


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCC-----------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH
Q 019699          168 ELESRKESYDVIIGDLADPIEGG-----------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN  236 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~-----------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~  236 (337)
                      .  ....+||+|+.++|-.....           +...-...-|++. +.+.|++||.+++=... +.+......+.+.+
T Consensus       239 ~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~iI~p~-~~L~~~~~~~~iR~  314 (425)
T d2okca1         239 K--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVLPD-NVLFEAGAGETIRK  314 (425)
T ss_dssp             S--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEEH-HHHHCSTHHHHHHH
T ss_pred             h--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHH-HHHhcCCCCeEEEEech-HHhhhhhhHHHHHH
Confidence            2  23478999999998422100           0001112458888 78899999976654311 11223333445556


Q ss_pred             HHhhhcC
Q 019699          237 TLRQVFK  243 (337)
Q Consensus       237 ~l~~vF~  243 (337)
                      .|-+-+.
T Consensus       315 ~Ll~~~~  321 (425)
T d2okca1         315 RLLQDFN  321 (425)
T ss_dssp             HHHHHEE
T ss_pred             HHHHhcc
Confidence            6655554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.32  E-value=0.00067  Score=55.92  Aligned_cols=98  Identities=24%  Similarity=0.382  Sum_probs=69.8

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +|.+|++||+|.-+. +...++.. ..+|++.|.+++.++..+..++.        +++....+- +.+.+.-...|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~--------~~~~~~~~~-~~l~~~~~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS--------RVELLYSNS-AEIETAVAEADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG--------GSEEEECCH-HHHHHHHHTCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc--------cceeehhhh-hhHHHhhccCcEEE
Confidence            589999999996554 44445544 47899999999999888877653        345555543 23333335689999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      .-.--|-  .++..|.|++..     +.++||.+++
T Consensus       101 ~aalipG--~~aP~lIt~~mv-----~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPG--RRAPILVPASLV-----EQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTT--SSCCCCBCHHHH-----TTSCTTCEEE
T ss_pred             EeeecCC--cccCeeecHHHH-----hhcCCCcEEE
Confidence            9988765  445689998753     4688999886

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00018  Score=65.72  Aligned_cols=61  Identities=10%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      .+...||+||.|.|.++++++++....+|++||+|+...+..++.+       .+.+++++.+|+..|
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~-------~~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-------EGSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-------TTSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc-------cCCCcEEEeCchhhc
Confidence            3567899999999999999998744579999999999999888754       257899999999865

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.19  E-value=0.0003  Score=61.65  Aligned_cols=133  Identities=12%  Similarity=0.017  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      .+..+|+|||||.|+.+..++....+..+.++++--..     .-.|.....+...-+++..++-..++  .+++.|+|+
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~-----~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vl  137 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG-----HEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLL  137 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEE
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc-----ccCCccccccccccccchhhhhHHhc--CCCcCCEEE
Confidence            44568999999999999999988777788888883210     00111111111122344444433332  357899999


Q ss_pred             EeCCCCCCCCCC-cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699          181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV  246 (337)
Q Consensus       181 ~D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~  246 (337)
                      +|... ....+. .+.-+.+.++. +.+.|+|||-||+-.-+|+   .+ ...+.+..|+..|....
T Consensus       138 cDm~e-ss~~~~vd~~Rtl~vLel-a~~wLk~gg~FvvKVl~py---~~-~v~e~le~lq~~fgg~l  198 (257)
T d2p41a1         138 CDIGE-SSPNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNPY---MS-SVIEKMEALQRKHGGAL  198 (257)
T ss_dssp             ECCCC-CCSSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCCC---SH-HHHHHHHHHHHHHCCEE
T ss_pred             eeCCC-CCCCchhhhhhHHHHHHH-HHHHcccCCEEEEEECCCC---Ch-HHHHHHHHHHHHhCCee
Confidence            99852 211111 12334456665 6789999999999875552   33 34456678888897643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00082  Score=65.02  Aligned_cols=150  Identities=9%  Similarity=-0.005  Sum_probs=85.9

Q ss_pred             HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcC----C--------------CcEEEEEECChHHHHHHHhhhhhccC
Q 019699           90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK----T--------------VEKVVMCDIDEEVVEFCKSYLVVNKE  151 (337)
Q Consensus        90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~----~--------------~~~v~~VEid~~vi~~a~~~f~~~~~  151 (337)
                      ++|+.  ++......+|++-.||+|+++.++.++-    .              ...+.++|+++....+|+-++-.+..
T Consensus       154 ~~mv~--ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         154 KTIIH--LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHH--HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             Hhhhh--cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence            45543  3333445699999999999987776541    0              12589999999999999987654321


Q ss_pred             CC-CCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC--------CCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          152 AF-SDPRLELVINDARAELESRKESYDVIIGDLADPIEG--------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       152 ~~-~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~--------~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      .. -...-.+..+|...--.....+||+|+.++|-....        .+...-...-|++. +.+.|++||.+++=... 
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~gGr~aiIlP~-  309 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVVPD-  309 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEEH-
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH-HHHhccccCcEEEEEeh-
Confidence            00 011223444443322112346899999999742110        01111112348888 68999999977654311 


Q ss_pred             CcCCChhHHHHHHHHHhhhcC
Q 019699          223 GIFSHTEVFSCIYNTLRQVFK  243 (337)
Q Consensus       223 ~~~~~~~~~~~i~~~l~~vF~  243 (337)
                      +.+........+.+.|-+-+-
T Consensus       310 ~~Lf~~~~~~~iR~~Ll~~~~  330 (524)
T d2ar0a1         310 NVLFEGGKGTDIRRDLMDKCH  330 (524)
T ss_dssp             HHHHCCTHHHHHHHHHHHHEE
T ss_pred             HHhhhhhhhHHHHHHHHHcCC
Confidence            112122223445566655544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.0018  Score=53.33  Aligned_cols=98  Identities=16%  Similarity=0.125  Sum_probs=62.6

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---Hhh-c-CC
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-R-KE  174 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~-~-~~  174 (337)
                      .+..+||++|+|. |..+..++++.+..+|+++|.+++-.+.++++-...       -+.....|..++   +.+ . ..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~-------vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL-------TLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE-------EEeccccchHHHHHHHHHhhCCC
Confidence            3468999999874 666778888877679999999999999998862210       000011233222   322 2 34


Q ss_pred             ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+|+||-....     +       .-++. +.+.|+++|.+++-
T Consensus       100 g~Dvvid~vG~-----~-------~~~~~-a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         100 GADFILEATGD-----S-------RALLE-GSELLRRGGFYSVA  130 (182)
T ss_dssp             CEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEEC
T ss_pred             CceEEeecCCc-----h-------hHHHH-HHHHhcCCCEEEEE
Confidence            59998844322     1       12344 46789999998754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.73  E-value=0.0014  Score=53.92  Aligned_cols=99  Identities=13%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      ..+..+||++|+|. |.++..+++..+..+|+++|.+++=.+.|+++-...       -+.....|..+.+.+ + ...+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~-------~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD-------ILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE-------EECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc-------cccccchhHHHHHHHHhhccCc
Confidence            35568999999987 777888888877778999999999999999852110       000111233344433 2 2459


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+||--...+            +.++. +-+.|+|+|.+++-
T Consensus        98 D~vid~~g~~------------~~~~~-a~~~~~~~G~iv~~  126 (174)
T d1jqba2          98 DRVIMAGGGS------------ETLSQ-AVKMVKPGGIISNI  126 (174)
T ss_dssp             EEEEECSSCT------------THHHH-HHHHEEEEEEEEEC
T ss_pred             ceEEEccCCH------------HHHHH-HHHHHhcCCEEEEE
Confidence            9988554322            12334 45789999998874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.0025  Score=53.41  Aligned_cols=112  Identities=11%  Similarity=0.077  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCce
Q 019699          100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~y  176 (337)
                      ..+..+||++|+|. |.++..+++..+..+|+++|.++.-++.|+++-...-   .++    ...|..+.+.+  ....+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~---~~~----~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA---DLS----LDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE---ETT----SSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE---EeC----CCcCHHHHHHHHhCCCCc
Confidence            45678999999998 5566777777777899999999999999998732110   001    12344444433  24569


Q ss_pred             eEEEEeCCCCCCCCCCc---CCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCY---KLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~---~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++|-....+....+..   ..-+.+.++. +.+.++|+|.+++-.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~-~~~~~r~gG~v~~~G  140 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEECS
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHH-HHHHHhcCCEEEEee
Confidence            99885443221111111   1113467787 678999999887653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0034  Score=50.94  Aligned_cols=97  Identities=13%  Similarity=0.060  Sum_probs=62.3

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||++|+| .|.++..++++.+ .+|++++.+++-++.|+++-..         ..+...+-.++.+...+.+|+|
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lGa~---------~~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMGAD---------HYIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHTCS---------EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccCCc---------EEeeccchHHHHHhhhcccceE
Confidence            566899999998 5556677777765 5899999999999999986311         0111111123455556789998


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +.-...+.  ..  . +     .. +-+.|+++|.+++-
T Consensus        96 i~~~~~~~--~~--~-~-----~~-~~~~l~~~G~iv~~  123 (168)
T d1piwa2          96 VVCASSLT--DI--D-F-----NI-MPKAMKVGGRIVSI  123 (168)
T ss_dssp             EECCSCST--TC--C-T-----TT-GGGGEEEEEEEEEC
T ss_pred             EEEecCCc--cc--h-H-----HH-HHHHhhccceEEEe
Confidence            85433221  10  1 1     12 46789999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.52  E-value=0.0039  Score=51.82  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCC-CC-CCeEEEEccH-----------HH
Q 019699          102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-SD-PRLELVINDA-----------RA  167 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-~d-~rv~v~~~D~-----------~~  167 (337)
                      +|.+||+||+|..++ +...++.. ..+|++.|+++...+..++.++..-... .+ ...+-..+.+           .+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            578999999997655 44444444 4799999999999999998765321000 00 0011000111           12


Q ss_pred             HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699          168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV  216 (337)
Q Consensus       168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv  216 (337)
                      -+.+.-.+-|+||.-.--|.  .++..|.+++..     +.++||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG--~~aP~lit~~mv-----~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG--KPAPVLITEEMV-----TKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT--SCCCCCSCHHHH-----TTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCC--cccceeehHHHH-----HhcCCCcEEE
Confidence            22222357999999988776  445589998743     4689999886

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0083  Score=48.52  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=63.3

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH---HHHhh-cCCc
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR---AELES-RKES  175 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~---~~l~~-~~~~  175 (337)
                      .+..+||++|+|..+ ++..++++.+..+|+++|.+++=.+.|+++-....       +..-..|..   +.+.. .+..
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~-------~~~~~~~~~~~~~~~~~~~g~g   97 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV-------LQISKESPQEIARKVEGQLGCK   97 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE-------EECSSCCHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccc-------ccccccccccccccccccCCCC
Confidence            445799999998654 45666777776799999999999999998632110       000012222   22222 3467


Q ss_pred             eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+||--...            ...++. +-+.++++|.+++-.
T Consensus        98 ~Dvvid~~G~------------~~~~~~-a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          98 PEVTIECTGA------------EASIQA-GIYATRSGGTLVLVG  128 (171)
T ss_dssp             CSEEEECSCC------------HHHHHH-HHHHSCTTCEEEECS
T ss_pred             ceEEEeccCC------------chhHHH-HHHHhcCCCEEEEEe
Confidence            9998854421            134455 567899999988754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.36  E-value=0.021  Score=45.74  Aligned_cols=103  Identities=12%  Similarity=0.023  Sum_probs=63.4

Q ss_pred             CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      ....+||++|+| -|.++..++++.+ .+|+++|.+++=.+.|+++........+...-  -..+..+.+.. ..+.+|+
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~--~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKE--EESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTS--CHHHHHHHHHHHSSSCCSE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEecccccc--ccchhhhhhhcccccCCce
Confidence            456899999987 4556677777775 58999999999999999864311000000000  00112233333 3467998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||-...     .+       ..++. +-+.|+++|.+++-.
T Consensus       102 vid~~g-----~~-------~~~~~-a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         102 TIDCSG-----NE-------KCITI-GINITRTGGTLMLVG  129 (170)
T ss_dssp             EEECSC-----CH-------HHHHH-HHHHSCTTCEEEECS
T ss_pred             eeecCC-----Ch-------HHHHH-HHHHHhcCCceEEEe
Confidence            875432     11       33444 467899999988654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.36  E-value=0.0036  Score=50.44  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||++|+|. |.++..++++.+ .+|+++|.+++-.+.++++-...       -+.....|..+.+.+....+|.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASL-------TVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCccc-------cccccchhHHHHHHHhhcCCccc
Confidence            4568999999875 445566777765 78999999999999999863211       01111134444444433446666


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      +.+...     +       +-++. +-+.|+++|.+++-
T Consensus        98 i~~~~~-----~-------~~~~~-~~~~l~~~G~iv~~  123 (166)
T d1llua2          98 LVTAVS-----N-------SAFGQ-AIGMARRGGTIALV  123 (166)
T ss_dssp             EECCSC-----H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred             cccccc-----c-------hHHHH-HHHHhcCCcEEEEE
Confidence            655431     1       23444 56899999998864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.32  E-value=0.022  Score=45.66  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ++|++||+|  ++.+++.+.+.....+|+++|.|++.++.+++.-..          .....+..   .......|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~----------~~~~~~~~---~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII----------DEGTTSIA---KVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC----------SEEESCGG---GGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc----------hhhhhhhh---hhhccccccccc
Confidence            579999999  455677776665456899999999999999875211          11111111   112246899998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY  248 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~  248 (337)
                      ..+..         ...+.+.. ++..++++-+++ ..++.    .....+.+.+.+...|-..+|.
T Consensus        69 a~p~~---------~~~~vl~~-l~~~~~~~~ii~-d~~s~----k~~~~~~~~~~~~~~~i~~hPm  120 (171)
T d2g5ca2          69 SSPVR---------TFREIAKK-LSYILSEDATVT-DQGSV----KGKLVYDLENILGKRFVGGHPI  120 (171)
T ss_dssp             CSCHH---------HHHHHHHH-HHHHSCTTCEEE-ECCSC----CTHHHHHHHHHHGGGEECEEEE
T ss_pred             cCCch---------hhhhhhhh-hhcccccccccc-ccccc----cHHHHHHHHHhhcccccccccc
Confidence            87511         13466777 678888776654 44332    2334445555566555555554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.29  E-value=0.0041  Score=50.80  Aligned_cols=98  Identities=12%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      .+..+||++|+|.-+ ++..+++..+...|.++|.+++-.+.++++-...       -+..-..|..+.+++ +++.+|+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~-------~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH-------VINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE-------EEeCCCcCHHHHHHHHcCCCCcE
Confidence            456789999997554 4555666556778999999999999999863110       011112355565554 3567999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      ||-....            .+.++. +.+.|+++|.+++-
T Consensus       100 vid~~G~------------~~~~~~-~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         100 ALESTGS------------PEILKQ-GVDALGILGKIAVV  126 (174)
T ss_dssp             EEECSCC------------HHHHHH-HHHTEEEEEEEEEC
T ss_pred             EEEcCCc------------HHHHHH-HHhcccCceEEEEE
Confidence            8855421            134455 56789999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.72  E-value=0.013  Score=47.49  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv  178 (337)
                      .+..+||++|+|..+. +..++++.+...|+++|.+++=.+.++++....-  + +++    ..+..+.++.. .+.+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~--i-~~~----~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHV--V-DAR----RDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEE--E-ETT----SCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccccee--e-cCc----ccHHHHHHHhhCCCCceE
Confidence            4557899999886555 4566666667889999999999999998643210  0 010    12233344433 356998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||-....            ...++. ..+.|+++|.+++-.
T Consensus       104 vid~~g~------------~~~~~~-a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         104 AMDFVGS------------QATVDY-TPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEESSCC------------HHHHHH-GGGGEEEEEEEEECC
T ss_pred             EEEecCc------------chHHHH-HHHHHhCCCEEEEEe
Confidence            8855431            133455 678999999988643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.67  E-value=0.0095  Score=47.99  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             CCCCeEEEEec-c-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGG-G-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~-G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      .+..+||++|+ | .|.++..+++..+..+|++++.+++=.+.++++-....       +..-..|..+.+.+ + ++.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~-------i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV-------INASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEE-------EETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCcee-------eccCCcCHHHHHHHHhhcccc
Confidence            45679999996 3 44556666676666799999999999999988632110       00011233444433 2 4569


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|+-....            .+.++. +-+.|+|+|.+++-
T Consensus        99 d~vid~~g~------------~~~~~~-a~~~l~~~G~iv~~  127 (170)
T d1jvba2          99 DAVIDLNNS------------EKTLSV-YPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEEESCCC------------HHHHTT-GGGGEEEEEEEEEC
T ss_pred             hhhhccccc------------chHHHh-hhhhcccCCEEEEe
Confidence            988854321            122333 56789999998764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.65  E-value=0.18  Score=43.97  Aligned_cols=144  Identities=14%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeEEEEeC
Q 019699          107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDVIIGDL  183 (337)
Q Consensus       107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDvIi~D~  183 (337)
                      +-.=.|+-.+++.+++.  ..++..+|+.|+-.+..+++|..      ++|++++..||.+.+...   .++==+|++|+
T Consensus        87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~~------~~~~~v~~~DG~~~l~allPP~~rRgLVLIDP  158 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  158 (271)
T ss_dssp             CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhcc------CCCceEEcCchHHHHHhhCCCCCCceEEEecC
Confidence            34677888899888873  57999999999999999888743      689999999999988662   35556999998


Q ss_pred             CCCCCCCCCcCCchHHHHHH--HhccccC--CCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc--CC
Q 019699          184 ADPIEGGPCYKLYTKSFYEF--VVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF--AD  257 (337)
Q Consensus       184 ~dp~~~~p~~~L~t~ef~~~--~~~~~L~--p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~--~~  257 (337)
                      +....         .||-+.  .+.+.++  +.|+++++.  |  ..+......+.+.|++.-+........+...  .+
T Consensus       159 pYE~k---------~ey~~v~~~l~~a~kr~~~g~~~iWY--P--i~~~~~~~~~~~~l~~~~~k~l~~El~~~~~~~~g  225 (271)
T d2oo3a1         159 SYERK---------EEYKEIPYAIKNAYSKFSTGLYCVWY--P--VVNKAWTEQFLRKMREISSKSVRIELHLNPLINEG  225 (271)
T ss_dssp             CCCST---------THHHHHHHHHHHHHHHCTTSEEEEEE--E--ESSHHHHHHHHHHHHHHCSSEEEEEEECCCSSCCS
T ss_pred             CcCCH---------HHHHHHHHHHHHHHHhCCCceEEEEe--e--ccCcHHHHHHHHHHHhcCccceeEEEeeCCCCCCC
Confidence            63321         122221  0223333  689999985  3  4566777888888887755432222233222  23


Q ss_pred             ceE-EEEEecCCCCC
Q 019699          258 TWG-WIMASDSPFTL  271 (337)
Q Consensus       258 ~~~-~~~as~~p~~~  271 (337)
                      +.+ =++.-+.|..+
T Consensus       226 m~GSGm~iiNPPw~l  240 (271)
T d2oo3a1         226 MTGCGLWIINPPYTF  240 (271)
T ss_dssp             CCEEEEEEESCCTTH
T ss_pred             cceeEEEEECCCccH
Confidence            444 24556666554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.45  E-value=0.022  Score=46.44  Aligned_cols=100  Identities=8%  Similarity=0.013  Sum_probs=61.7

Q ss_pred             CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc--HHHHHhh-cCCce
Q 019699          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELES-RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D--~~~~l~~-~~~~y  176 (337)
                      .+...||++|+|+.++ +..++++.+..+|+++|++++=++.|+++-...-       ++....|  .....+. ....+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~-------in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATEC-------ISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEE-------ECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEE-------ECccccchHHHHHHHHhccccc
Confidence            4567899999986554 5667777777899999999999999999853210       0000111  1122221 35679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++|.....+           ..+... +...++.+|.+++-.
T Consensus       101 d~vi~~~g~~-----------~~~~~a-~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         101 GYTFEVIGHL-----------ETMIDA-LASCHMNYGTSVVVG  131 (176)
T ss_dssp             CEEEECSCCH-----------HHHHHH-HTTSCTTTCEEEECS
T ss_pred             eEEEEeCCch-----------HHHHHH-HHHhhcCCeEEEEEE
Confidence            9998776421           122233 444556668887543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.04  E-value=0.021  Score=46.62  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=64.0

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc--HHHHHhh-cCCce
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELES-RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D--~~~~l~~-~~~~y  176 (337)
                      ....+||++|+|. |.++..+++..+..+|+++|.+++=.+.|+++-...-  . ++    ...|  .....+. ..+.+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~--i-~~----~~~~~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC--L-NP----RELDKPVQDVITELTAGGV   99 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEE--E-CG----GGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcc--c-CC----ccchhhhhhhHhhhhcCCC
Confidence            4568999999987 6777888888877899999999999999999632110  0 00    0011  1222222 34679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~  219 (337)
                      |++|--...            .+.++. ..+.|+++ |.+++-.
T Consensus       100 d~vie~~G~------------~~~~~~-a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         100 DYSLDCAGT------------AQTLKA-AVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SEEEESSCC------------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred             cEEEEeccc------------chHHHH-HHHHhhcCCeEEEecC
Confidence            999854421            133444 46789996 9887643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.083  Score=42.14  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+..+||++|+|+ |.++..+++..+ .++++++.+++-.+.+++.-..          .++...-........+.+|+
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGad----------~~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGAD----------EVVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTCS----------EEEETTCHHHHHTTTTCEEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCCc----------EEEECchhhHHHHhcCCCce
Confidence            35678999999874 556777788765 5667899999888888875321          11221112223333467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|-....+.      .      ++. .-++|+++|.+++-.
T Consensus        97 vid~~g~~~------~------~~~-~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          97 ILNTVAAPH------N------LDD-FTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEECCSSCC------C------HHH-HHTTEEEEEEEEECC
T ss_pred             eeeeeecch------h------HHH-HHHHHhcCCEEEEec
Confidence            886654221      1      123 457999999988753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.83  E-value=0.028  Score=45.69  Aligned_cols=100  Identities=9%  Similarity=0.001  Sum_probs=60.1

Q ss_pred             CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc--HHHHHhh-cCCce
Q 019699          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELES-RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D--~~~~l~~-~~~~y  176 (337)
                      .+..+||++|+|..++ +..+++..+..+|.++|++++=++.|+++-...-       ++....|  ..+..+. ..+.+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~-------i~~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC-------LNPKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE-------ECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEE-------EcCCCchhHHHHHHHHhcCCCC
Confidence            4567899999986554 4556666667899999999999999998632110       0001122  1222222 34679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+||-....     +      ..+... +...++++|.+++-.
T Consensus        99 d~vid~~g~-----~------~~~~~~-~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          99 DYAVECAGR-----I------ETMMNA-LQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SEEEECSCC-----H------HHHHHH-HHTBCTTTCEEEECC
T ss_pred             cEEEEcCCC-----c------hHHHHH-HHHHHHhcCceEEEE
Confidence            999966532     1      122232 344445568877543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.71  E-value=0.096  Score=40.07  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             eEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhcC-CceeEE
Q 019699          105 TIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRK-ESYDVI  179 (337)
Q Consensus       105 ~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~~-~~yDvI  179 (337)
                      +|+++|+|.=  .+++.|.+.  ..+|++||.||+.++.+++.+          ...++.+|+.  +.+++.. +..|++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhhhhh
Confidence            7999999732  223444433  368999999999888766532          3568888885  5566543 678988


Q ss_pred             EEeCC
Q 019699          180 IGDLA  184 (337)
Q Consensus       180 i~D~~  184 (337)
                      +.-..
T Consensus        70 v~~t~   74 (132)
T d1lssa_          70 IAVTG   74 (132)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            87544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.71  E-value=0.048  Score=43.23  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+..+||+.|+|+-+ ++..++++.+ .+|++++.+++=.+.++++-...-  . ++    ...|..+-++.....+|.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~~~--~-~~----~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLV--V-NP----LKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSEE--E-CT----TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCccee--c-cc----ccchhhhhcccccCCCceE
Confidence            456899999987644 4566666654 589999999999999988532110  0 00    0124444454433445666


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +.|...     +       +.+.. ..++|+++|.+++-.
T Consensus        98 v~~~~~-----~-------~~~~~-a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          98 VVTAVS-----K-------PAFQS-AYNSIRRGGACVLVG  124 (168)
T ss_dssp             EESSCC-----H-------HHHHH-HHHHEEEEEEEEECC
T ss_pred             EeecCC-----H-------HHHHH-HHHHhccCCceEecc
Confidence            666531     1       23444 567899999988754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.61  E-value=0.13  Score=40.85  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             CeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHHHHhhhhhc--cCCC-CCCCeEEEEccHHHHHhhcCCceeE
Q 019699          104 KTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAF-SDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~--~~~~-~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      +++.+||+|.-+.+  ..+.+.  ..+|+++|.+++-++..++.-...  .... ...+...+..|..+.+    +..|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCE
Confidence            68999999966553  444443  368999999999888877642211  1000 0112223445655555    35899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      ||+-.+.         ....+.++. ++.+|+++-+++...+
T Consensus        76 iii~v~~---------~~~~~~~~~-i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          76 ILIVVPA---------IHHASIAAN-IASYISEGQLIILNPG  107 (184)
T ss_dssp             EEECSCG---------GGHHHHHHH-HGGGCCTTCEEEESSC
T ss_pred             EEEEEch---------hHHHHHHHH-hhhccCCCCEEEEeCC
Confidence            9987542         124678888 7999999988776543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.54  E-value=0.13  Score=39.14  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCceeEEE
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~yDvIi  180 (337)
                      |+++++|.|  ..++++++......|++||.|++.++..+.           ..+.++.+|+.  +.|++. -++.+.++
T Consensus         1 kHivI~G~g--~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWS--ESTLECLRELRGSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCC--HHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEE
Confidence            568888875  466666665445679999999998876653           35688889984  456553 36788888


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +...+..     ..+    +.-. ..+.+.|...+++...
T Consensus        68 ~~~~~d~-----~n~----~~~~-~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          68 VNLESDS-----ETI----HCIL-GIRKIDESVRIIAEAE   97 (129)
T ss_dssp             ECCSSHH-----HHH----HHHH-HHHHHCSSSCEEEECS
T ss_pred             Eeccchh-----hhH----HHHH-HHHHHCCCceEEEEEc
Confidence            8765422     111    1222 3467899988877764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.52  E-value=0.07  Score=42.37  Aligned_cols=87  Identities=18%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             eEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ||.+||+|  ++.+++.+.+.  ..+|+++|.+++.++.+++.-..          .....+ .+.+    +..|+||+-
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~----------~~~~~~-~~~~----~~~DiIila   64 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLV----------DEAGQD-LSLL----QTAKIIFLC   64 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSC----------SEEESC-GGGG----TTCSEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcc----------ceeeee-cccc----ccccccccc
Confidence            79999999  66677777664  36899999999999888764211          011112 1222    568999987


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      .+.       .  ...+.++. +...|+++-+++ ..
T Consensus        65 vp~-------~--~~~~vl~~-l~~~l~~~~iv~-~~   90 (165)
T d2f1ka2          65 TPI-------Q--LILPTLEK-LIPHLSPTAIVT-DV   90 (165)
T ss_dssp             SCH-------H--HHHHHHHH-HGGGSCTTCEEE-EC
T ss_pred             CcH-------h--hhhhhhhh-hhhhccccccee-ec
Confidence            641       1  24567787 788888877664 44

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.43  E-value=0.32  Score=42.37  Aligned_cols=151  Identities=11%  Similarity=0.083  Sum_probs=93.2

Q ss_pred             CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      .+-|||++-+|.|++...+.+. +..-+-++|+|+..++..+.+++..           ..+|..+.-...-...|+|+.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~~~~Dll~g   77 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTIPDHDILCA   77 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGSCCCSEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhcceeeeeec
Confidence            4569999999999998877654 4666788999999999999988632           136766654444467999998


Q ss_pred             eCC-CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeec
Q 019699          182 DLA-DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI  252 (337)
Q Consensus       182 D~~-dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~v  252 (337)
                      -++ -+.. ++       +-..|+ .+|++. + +.++|.=+++=|...--.......+..+.+.|++.-=.+.......
T Consensus        78 gpPCq~fS~ag~~~g~~d~r~~l~-~~~~~~-i-~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a  154 (327)
T d2c7pa1          78 GFPCQAFSISGKQKGFEDSRGTLF-FDIARI-V-REKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA  154 (327)
T ss_dssp             ECCCTTTCTTSCCCGGGSTTSCHH-HHHHHH-H-HHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEG
T ss_pred             ccccchhhhhhhhcCCcccchhHH-HHHHHH-H-hccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecH
Confidence            886 2221 11       111233 456664 3 6789987666565211001234567777777776522233333333


Q ss_pred             cccC----CceEEEEEecC
Q 019699          253 PSFA----DTWGWIMASDS  267 (337)
Q Consensus       253 P~~~----~~~~~~~as~~  267 (337)
                      -.||    ..-.|++|++.
T Consensus       155 ~~~GvPQ~R~R~fivg~r~  173 (327)
T d2c7pa1         155 LDYGIPQKRERIYMICFRN  173 (327)
T ss_dssp             GGGTCSBCCEEEEEEEEBG
T ss_pred             HHcCCCchhhhheeeeecc
Confidence            3343    22357888764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.036  Score=44.62  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~y  176 (337)
                      .+..+||+.|+  |-|.++..++++.+ .+|+++..+++-.+.++++-...       -+.....|..+.+++  ..+.+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga~~-------vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGAHE-------VFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSE-------EEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeccccccccccccccccC-cccccccccccccccccccCccc-------ccccccccHHHHhhhhhccCCc
Confidence            35678999995  56677788888775 57888888888888888753211       011111344454433  24669


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|+-..      +       .+.++. ..+.|+++|.++.-
T Consensus        99 d~v~d~~------g-------~~~~~~-~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          99 DIIIEML------A-------NVNLSK-DLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEESC------H-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred             eEEeecc------c-------HHHHHH-HHhccCCCCEEEEE
Confidence            9888432      1       134455 56789999998864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.0089  Score=47.45  Aligned_cols=53  Identities=19%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             HHhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhhh
Q 019699           92 LVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYL  146 (337)
Q Consensus        92 l~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~V--Eid~~vi~~a~~~f  146 (337)
                      |..+|+...-+.++||+||||.-+..  +.+++.  ..+|++|  |+++++.+.+.+..
T Consensus         2 ~~~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~~~~~~~   58 (150)
T d1kyqa1           2 VKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDLHKSIIPKFGKFI   58 (150)
T ss_dssp             CCCEEEEECCTTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEECTTHHHHHCGGG
T ss_pred             cccchhheeeCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHhcc
Confidence            34567777788999999999986664  334443  4688888  88899988887654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.96  E-value=0.25  Score=39.79  Aligned_cols=78  Identities=19%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             CCeEEEEecchhHH---HHHHHhcCC---CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          103 PKTIFIMGGGEGST---AREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       103 p~~VLiIG~G~G~~---~~~ll~~~~---~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      ..+|.+||+|+.++   ...++.+..   ..+++.+|+|++-++...+.+.........+.--....|-.+-++    --
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----~A   78 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----DV   78 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----SC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----CC
Confidence            35799999997533   233333322   358999999998876433333211100111222234456556554    47


Q ss_pred             eEEEEeCC
Q 019699          177 DVIIGDLA  184 (337)
Q Consensus       177 DvIi~D~~  184 (337)
                      |+|++-.-
T Consensus        79 D~Vvitag   86 (167)
T d1u8xx1          79 DFVMAHIR   86 (167)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            89988764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.92  E-value=0.023  Score=42.72  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             HhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEEC--ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699           93 VHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE  168 (337)
Q Consensus        93 ~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEi--d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~  168 (337)
                      .+.|++..-+.++||+||+|.=+..  +.+++.  ..+|++++.  +++....++           ..+++++.....  
T Consensus         2 ~~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~~~~~~~~~~-----------~~~i~~~~~~~~--   66 (113)
T d1pjqa1           2 DHLPIFCQLRDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTFIPQFTVWAN-----------EGMLTLVEGPFD--   66 (113)
T ss_dssp             CCEEEEECCBTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSCCHHHHHHHT-----------TTSCEEEESSCC--
T ss_pred             CccceEEEeCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCChHHHHHHh-----------cCCceeeccCCC--
Confidence            3567777778899999999976653  444443  467877754  344443332           245666654322  


Q ss_pred             HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                       ...-..+|+|+....++.        .+.+.     .+..++.|+++-....|
T Consensus        67 -~~dl~~~~lv~~at~d~~--------~n~~i-----~~~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          67 -ETLLDSCWLAIAATDDDT--------VNQRV-----SDAAESRRIFCNVVDAP  106 (113)
T ss_dssp             -GGGGTTCSEEEECCSCHH--------HHHHH-----HHHHHHTTCEEEETTCT
T ss_pred             -HHHhCCCcEEeecCCCHH--------HHHHH-----HHHHHHcCCEEEeCCCh
Confidence             111256888888765431        12333     44456679887444333

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.83  E-value=0.61  Score=40.05  Aligned_cols=149  Identities=11%  Similarity=0.102  Sum_probs=87.6

Q ss_pred             eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699          105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA  184 (337)
Q Consensus       105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~  184 (337)
                      +||++-+|.|++..-+.+. +...+-++|+|+...+..+.+++.          +++.+|..++-...-.+.|+|+.-++
T Consensus         2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~~----------~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHSA----------KLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCCS----------EEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCCC----------CCccCChhhCCHhHcccccEEeeccc
Confidence            7999999999887666553 456677999999999998887642          45678876653333357899998876


Q ss_pred             -CCCC-CCCCc-------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          185 -DPIE-GGPCY-------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       185 -dp~~-~~p~~-------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                       .+.. .+...       .|+ .++++.  -+.++|.-+++=|...-........+..+++.+.+.-=.+......--.|
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~-~~~~~~--i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~  147 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLF-YEYIRI--LKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDY  147 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHH-HHHHHH--HHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGG
T ss_pred             ccccccccccccccccccchH-HHHHHH--HHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccc
Confidence             2221 11111       121 245553  35789987777665211001234456666666665422233333333334


Q ss_pred             C----CceEEEEEecC
Q 019699          256 A----DTWGWIMASDS  267 (337)
Q Consensus       256 ~----~~~~~~~as~~  267 (337)
                      +    ..=.|++|.++
T Consensus       148 GvPQ~R~R~fiv~~r~  163 (324)
T d1dcta_         148 GVAQDRKRVFYIGFRK  163 (324)
T ss_dssp             TCSBCCEEEEEEEEEG
T ss_pred             cCchhhceeeEeeecC
Confidence            3    22457888753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.75  E-value=0.34  Score=38.47  Aligned_cols=102  Identities=18%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChH-HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699          100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY  176 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~-vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y  176 (337)
                      ..+.++||+||.|.=+  +++.+.++ +..+++++--+.+ ..++++++ +..         -.-..|..+.+    ..|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~-~~~---------~~~~~~~~~~l----~~~   85 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL-GGE---------AVRFDELVDHL----ARS   85 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH-TCE---------ECCGGGHHHHH----HTC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhh-hcc---------cccchhHHHHh----ccC
Confidence            3577899999986432  23444444 5678999988854 44566654 211         01123444444    469


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |+||.-...+      ..+++.+.++..++.+-.....+++-.+-|
T Consensus        86 Divi~atss~------~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          86 DVVVSATAAP------HPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             SEEEECCSSS------SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             CEEEEecCCC------CccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            9999887643      356778877763333333456788887644

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.44  E-value=0.25  Score=39.36  Aligned_cols=46  Identities=13%  Similarity=0.101  Sum_probs=36.9

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      .+...||++|+|+++ ++..+++.....+|.+++.+++-.+.++++-
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            455789999887554 5566666677789999999999999999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.40  E-value=0.067  Score=45.05  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             EEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcC--------CchHHHHHHHhccccCCCceEEEeC
Q 019699          159 ELVINDARAELESR-KESYDVIIGDLADPIEGGPCYK--------LYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       159 ~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~--------L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +++.+|.++.|+.. +++.|+|+.|++-.....-...        -+..++++. +.+.|+|+|.++++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e-~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHH-hhhccccCccccccc
Confidence            58999999999885 4779999999974221000001        112356777 789999999887654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.16  E-value=0.25  Score=39.08  Aligned_cols=101  Identities=7%  Similarity=-0.033  Sum_probs=62.1

Q ss_pred             CCCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699          101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv  178 (337)
                      .+..+||+.|+|+. .++..+++..+...|.+++.+++-.+.++++-...-  .+...   ...+..+.++. ..+.+|+
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~--i~~~~---~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC--INPQD---FSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE--ECGGG---CSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEE--EeCCc---hhhHHHHHHHHHcCCCCcE
Confidence            55688999988743 445667776677899999999999999998632110  00000   01233444443 3467999


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      ||-...      .      ...++. +...++++|.+++-.
T Consensus       102 vid~~G------~------~~~~~~-~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         102 SFECIG------N------VKVMRA-ALEACHKGWGVSVVV  129 (176)
T ss_dssp             EEECSC------C------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred             eeecCC------C------HHHHHH-HHHhhcCCceeEEEE
Confidence            986542      1      134454 567788887765543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.37  Score=38.68  Aligned_cols=117  Identities=11%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      -..|+|+++|.|.-+-  ++.+.. . ..+|.++|+||.-  ..+.++.-         +++.  .    +++.-..-|+
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg-~-G~~V~v~e~dp~~--al~A~~dG---------~~v~--~----~~~a~~~adi   82 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRG-F-GARVIITEIDPIN--ALQAAMEG---------YEVT--T----MDEACQEGNI   82 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-T-TCEEEEECSCHHH--HHHHHHTT---------CEEC--C----HHHHTTTCSE
T ss_pred             ecCCEEEEeccccccHHHHHHHHh-C-CCeeEeeecccch--hHHhhcCc---------eEee--e----hhhhhhhccE
Confidence            3678999999996433  333332 3 4899999999933  33333211         1111  1    1222355788


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS  249 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~  249 (337)
                      |++-.-.       .+..+.|-|+     .|| +|.++.|.++-..-.+.+.+.+....-+++-|++..|.
T Consensus        83 vvtaTGn-------~~vI~~eh~~-----~MK-dgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          83 FVTTTGC-------IDIILGRHFE-----QMK-DDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEECSSC-------SCSBCHHHHT-----TCC-TTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEecCCC-------ccchhHHHHH-----hcc-CCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            8876532       2455666544     455 55666788753211222222221112234456666554

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.55  Score=40.78  Aligned_cols=151  Identities=15%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeE
Q 019699          102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDv  178 (337)
                      +|-+|+++-+|.|++...+.+.. ...-+-++|+|+..++..+.+++         ...++.+|..+.....  ....|+
T Consensus         1 ~p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~Dl   71 (343)
T d1g55a_           1 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             CCEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CCCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCccE
Confidence            46789999999999876654431 12346799999999999888764         2345566765332111  136899


Q ss_pred             EEEeCC-CCCC-CCC-------CcCCchHHHHHHHhcccc--CCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699          179 IIGDLA-DPIE-GGP-------CYKLYTKSFYEFVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP  247 (337)
Q Consensus       179 Ii~D~~-dp~~-~~p-------~~~L~t~ef~~~~~~~~L--~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~  247 (337)
                      |+..++ -+.. .+.       -..|+ .+|++. ++ .+  +|.-+++=|..  + +.....+..+.+.|++.-=.+..
T Consensus        72 l~ggpPCq~fS~ag~~~~~~d~r~~l~-~~~~~~-i~-~~~~kPk~~i~ENV~--~-l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T d1g55a_          72 ILMSPPCQPFTRIGRQGDMTDSRTNSF-LHILDI-LP-RLQKLPKYILLENVK--G-FEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             EEECCC------------------CHH-HHHHHH-GG-GCSSCCSEEEEEEET--T-GGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             EEeeccccccccccccccccccccccc-chhhhh-Hh-hhcCCCceeeeeccC--C-cccchhhHHHHhhhhccccccce
Confidence            998776 2221 111       11232 456664 44 34  68765554542  2 23344566677777776322333


Q ss_pred             EEeeccccC----CceEEEEEecC
Q 019699          248 YSAHIPSFA----DTWGWIMASDS  267 (337)
Q Consensus       248 ~~~~vP~~~----~~~~~~~as~~  267 (337)
                      ....-..||    ..=.|++|++.
T Consensus       146 ~vlna~dyGvPQ~R~Rvfivg~r~  169 (343)
T d1g55a_         146 FLLSPTSLGIPNSRLRYFLIAKLQ  169 (343)
T ss_dssp             EEECGGGGTCSCCCCEEEEEEEES
T ss_pred             eeeeccccCCcccceeEEEEEEeC
Confidence            333334443    22457888764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.63  E-value=0.13  Score=41.78  Aligned_cols=94  Identities=19%  Similarity=0.193  Sum_probs=59.0

Q ss_pred             CeEEEEe--cchhHHHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699          104 KTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI  179 (337)
Q Consensus       104 ~~VLiIG--~G~G~~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI  179 (337)
                      +.||+.|  +|-|.++..+++..+...|+++...++- .+++++. ..      |--+..-..|..+.+++ .++.+|+|
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-ga------d~vi~~~~~~~~~~~~~~~~~GvDvv  104 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-GF------DAAVNYKTGNVAEQLREACPGGVDVY  104 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-CC------SEEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-cc------eEEeeccchhHHHHHHHHhccCceEE
Confidence            6799987  5678889999998777778776655544 4455443 21      11112222345565655 45679999


Q ss_pred             EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      + |..     +       .+.++. ..+.|+++|.++.-
T Consensus       105 ~-D~v-----G-------g~~~~~-~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         105 F-DNV-----G-------GDISNT-VISQMNENSHIILC  129 (187)
T ss_dssp             E-ESS-----C-------HHHHHH-HHTTEEEEEEEEEC
T ss_pred             E-ecC-----C-------chhHHH-HhhhccccccEEEe
Confidence            7 532     2       133455 56899999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.46  E-value=0.11  Score=41.61  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=60.3

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCce
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~y  176 (337)
                      .+..+||+.|+  |.|.++..++++.+ .++.++.-+++-.+.++++....       -+.....|..+.+.+.  ++.+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga~~-------vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEY-------VGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSE-------EEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccccccc-------cccCCccCHHHHHHHHhCCCCE
Confidence            34578999874  56677788888765 57777777888788888753211       0111123455555442  4679


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|+.-..      .       +.++. +.+.|+++|.++.-
T Consensus        96 d~v~d~~g------~-------~~~~~-~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLA------G-------EAIQR-GVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCC------T-------HHHHH-HHHTEEEEEEEEEC
T ss_pred             EEEEeccc------c-------hHHHH-HHHHhcCCCEEEEE
Confidence            99994331      1       23444 56789999998863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.29  E-value=0.13  Score=39.06  Aligned_cols=69  Identities=29%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhc-CCceeE
Q 019699          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV  178 (337)
Q Consensus       104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~-~~~yDv  178 (337)
                      |+++++|+|.=+  +++.|.+.  ..+|+++|.|++.++.++..           ...++.+|+.+  .+.+. -.+.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~a~i~~a~~   67 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASY-----------ATHAVIANATEENELLSLGIRNFEY   67 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTT-----------CSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHh-----------CCcceeeecccchhhhccCCccccE
Confidence            578999997432  34445443  36799999999998876542           23567777742  34333 256888


Q ss_pred             EEEeCCC
Q 019699          179 IIGDLAD  185 (337)
Q Consensus       179 Ii~D~~d  185 (337)
                      +++..++
T Consensus        68 vi~~~~~   74 (134)
T d2hmva1          68 VIVAIGA   74 (134)
T ss_dssp             EEECCCS
T ss_pred             EEEEcCc
Confidence            8887764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=91.60  E-value=0.12  Score=44.69  Aligned_cols=65  Identities=26%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             CCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCC-CCCcCCc-------hHHHHHHHhccccCCCceEEEeCCC
Q 019699          156 PRLELVINDARAELESR-KESYDVIIGDLADPIEG-GPCYKLY-------TKSFYEFVVKPRLNPEGIFVTQAGP  221 (337)
Q Consensus       156 ~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~-~p~~~L~-------t~ef~~~~~~~~L~p~Gvlv~~~~~  221 (337)
                      ..-++++||.++.|+.. +++.|+|+.|+|-.... .-.....       -.+.++. +++.|+|+|.++++...
T Consensus        11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~-~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred             CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhCcccCcccccccc
Confidence            35599999999999885 47899999999742210 0000111       1346777 78999999999988653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.58  E-value=0.045  Score=46.87  Aligned_cols=63  Identities=21%  Similarity=0.162  Sum_probs=43.8

Q ss_pred             CeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCC----CCCc-CCchHHHHHHHhccccCCCceEEEeCC
Q 019699          157 RLELVINDARAELESR-KESYDVIIGDLADPIEG----GPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       157 rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~----~p~~-~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      +-.++++|.++.|+.. +++.|+|+.|+|-....    .... .-+..+++.. +.+.|+|+|.++++.+
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e-~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEEC
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHH-HHHHhCCCccEEEecC
Confidence            3457889999999886 47899999999732200    0000 0123556777 7899999999988764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.32  E-value=0.63  Score=36.59  Aligned_cols=82  Identities=17%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI  179 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI  179 (337)
                      .+.+||-+||+|. |.....++...+..++..+|++++.++.-..-+.................|-.+-+    ..-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCCCeE
Confidence            4568999999985 44444444444566899999998766543332221110111222233333333333    347888


Q ss_pred             EEeCCCC
Q 019699          180 IGDLADP  186 (337)
Q Consensus       180 i~D~~dp  186 (337)
                      ++-...+
T Consensus        81 vitag~~   87 (154)
T d1pzga1          81 IVTAGLT   87 (154)
T ss_dssp             EECCSCS
T ss_pred             EEecccc
Confidence            8877544

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.13  E-value=0.83  Score=37.03  Aligned_cols=145  Identities=14%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh---hhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      +||.+||+|.-+++...+-.....+|++...|++.++..++.-   ....+.--.++++ ...|..+.++    .-|+|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~-~t~~l~~a~~----~ad~ii   82 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNIT-FTSDVEKAYN----GAEIIL   82 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEE-EESCHHHHHT----TCSCEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccc-cchhhhhccC----CCCEEE
Confidence            4799999998776654333223458999999999988665421   1111111134565 3456555553    368999


Q ss_pred             EeCCCCCCCCCCcCCchHHHHHHHhccc-----cCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699          181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-----LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF  255 (337)
Q Consensus       181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~-----L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~  255 (337)
                      +-.+..         +.+++++. ++..     ++++-.+ +... -+ + .......+.+.+.+.++.-......-|++
T Consensus        83 iavPs~---------~~~~~~~~-~~~~~~~~~~~~~~~i-i~~t-KG-i-e~~t~~~~seii~e~~~~~~~~vlsGP~~  148 (189)
T d1n1ea2          83 FVIPTQ---------FLRGFFEK-SGGNLIAYAKEKQVPV-LVCT-KG-I-ERSTLKFPAEIIGEFLPSPLLSVLAGPSF  148 (189)
T ss_dssp             ECSCHH---------HHHHHHHH-HCHHHHHHHHHHTCCE-EECC-CS-C-CTTTCCCHHHHHTTTSCGGGEEEEESSCC
T ss_pred             EcCcHH---------HHHHHHHH-HHhhhhhhhccCCcEE-EEEE-CC-C-ccCCccchhhHHHHHhcccceEEEecCCc
Confidence            876421         23456655 4432     2333333 3321 01 1 11122233345666676544333456877


Q ss_pred             C-----C-ceEEEEEecC
Q 019699          256 A-----D-TWGWIMASDS  267 (337)
Q Consensus       256 ~-----~-~~~~~~as~~  267 (337)
                      .     + .-.+++||+.
T Consensus       149 A~Ev~~~~pt~~viAs~~  166 (189)
T d1n1ea2         149 AIEVATGVFTCVSIASAD  166 (189)
T ss_dssp             HHHHHTTCCEEEEEECSS
T ss_pred             HHHHHcCCCcEEEEEeCC
Confidence            2     1 2357778764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.02  E-value=2.5  Score=32.57  Aligned_cols=110  Identities=14%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             CCCCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..++||-+||+|. |. ++..++...-..++..+|++++..+.-..-+.. ...+....+++..+|- +-+    ..-|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~-~~~~~~~~~~~~~~d~-~~l----~daDv   77 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH-GKVFAPKPVDIWHGDY-DDC----RDADL   77 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH-HTTSSSSCCEEEECCG-GGT----TTCSE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhh-CccccCCCeEEEECCH-HHh----cccee
Confidence            4567999999874 33 344444444456899999999875432222221 1122334566666763 222    34699


Q ss_pred             EEEeCCCCCCCCCC-cCCc--hHH----HHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPC-YKLY--TKS----FYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~--t~e----f~~~~~~~~L~p~Gvlv~~  218 (337)
                      |++-...+...+.. ..+.  +.+    +.+. ++ .-.|+|++++-
T Consensus        78 vvitag~~~~~~~~R~dl~~~N~~i~~~i~~~-i~-~~~p~a~~ivv  122 (148)
T d1ldna1          78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VM-ASGFQGLFLVA  122 (148)
T ss_dssp             EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HH-HHTCCSEEEEC
T ss_pred             EEEecccccccCcchhHHHHHHHHHHHHHHHH-HH-hhCCCceEEEe
Confidence            99877655422211 1222  122    3333 22 34689987654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.01  E-value=0.98  Score=38.28  Aligned_cols=76  Identities=16%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.||+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+.+...     ..++..+..|..+      .++. 
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREK-----GVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4678888888665   345556554  468999999999888777665432     3578888887642      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence              2367999998875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.87  E-value=0.082  Score=45.11  Aligned_cols=48  Identities=25%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             hHHHHHHh--HHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECCh
Q 019699           87 IYHESLVH--PALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE  136 (337)
Q Consensus        87 ~Y~e~l~~--~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~  136 (337)
                      .|.+++.-  -++-...+|++|+|||+|-++++  .+|.+.  ..+|+++|-++
T Consensus        12 ~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~   63 (370)
T d2iida1          12 DYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE   63 (370)
T ss_dssp             THHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred             cHHHHHHHHhcCCCCCCCCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            36666542  22334467899999999987764  444454  36899999765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=90.63  E-value=0.22  Score=42.99  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      ..++..-|||--+|+|+++.++.+.  ..+..++|+|++.+++|++.+.
T Consensus       247 ~s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         247 LTEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             HCCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred             cccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence            3466789999999999999998886  4789999999999999998874

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.61  E-value=0.19  Score=40.43  Aligned_cols=90  Identities=13%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             CCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      -..|+|+++|-|.-+-+  ..+...  ..+|+++|+||  +.+.+.++.         .+++.  ...    +.-+.-|+
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DP--i~alqA~md---------Gf~v~--~~~----~a~~~aDi   81 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDP--ICAIQAVME---------GFNVV--TLD----EIVDKGDF   81 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCH--HHHHHHHTT---------TCEEC--CHH----HHTTTCSE
T ss_pred             ecCCEEEEecccccchhHHHHHHhC--CCEEEEEecCc--hhhHHHHhc---------CCccC--chh----HccccCcE
Confidence            46789999999976543  333332  47999999999  444444432         22221  212    22356899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA  222 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p  222 (337)
                      |+.-.-..       ...+.+-|+     .+|+|. ++.|.++-
T Consensus        82 ~vTaTGn~-------~vI~~~h~~-----~MKdga-Il~N~GHf  112 (163)
T d1v8ba1          82 FITCTGNV-------DVIKLEHLL-----KMKNNA-VVGNIGHF  112 (163)
T ss_dssp             EEECCSSS-------SSBCHHHHT-----TCCTTC-EEEECSST
T ss_pred             EEEcCCCC-------ccccHHHHH-----HhhCCe-EEEecccc
Confidence            99876422       334555433     466554 55688753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.58  E-value=0.42  Score=38.69  Aligned_cols=90  Identities=11%  Similarity=0.063  Sum_probs=53.8

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      +.|+||+.|+++|   .+++.++++  ..+|++++.+++-.+...+.+....   ...-..+-..|. +-+++.-+..|+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~-~~~~~~~~~iDi   95 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADD-ASRAEAVKGAHF   95 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSH-HHHHHHTTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccH-HHHHHHhcCcCe
Confidence            6789999997644   345556554  3689999999988877766654321   011122333332 233443467899


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      +|....-+      ..+.+.|-++.
T Consensus        96 lin~Ag~g------~~~~~~e~~~~  114 (191)
T d1luaa1          96 VFTAGAIG------LELLPQAAWQN  114 (191)
T ss_dssp             EEECCCTT------CCCBCHHHHHT
T ss_pred             eeecCccc------cccCCHHHHHh
Confidence            99876421      23455665554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.56  E-value=2.6  Score=33.29  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=41.6

Q ss_pred             CeEEEEecchhHHHHH----HHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCce
Q 019699          104 KTIFIMGGGEGSTARE----ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESY  176 (337)
Q Consensus       104 ~~VLiIG~G~G~~~~~----ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~y  176 (337)
                      -||-+||+|+-+++..    +++.  ....++..+|+|++-++.....+...... .....++.. .|-.+-+.    -.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-~~~~~~i~~~td~~eaL~----da   77 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE-VGADLKFEKTMNLDDVII----DA   77 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHT----TC
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHh-cCCCeEEEEeCChhhccc----CC
Confidence            4899999996554322    3332  23459999999998766433322110000 123345433 45555553    36


Q ss_pred             eEEEEeC
Q 019699          177 DVIIGDL  183 (337)
Q Consensus       177 DvIi~D~  183 (337)
                      |+|++-.
T Consensus        78 d~Vv~~~   84 (171)
T d1obba1          78 DFVINTA   84 (171)
T ss_dssp             SEEEECC
T ss_pred             CeEeeec
Confidence            7887654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.19  Score=39.99  Aligned_cols=97  Identities=11%  Similarity=0.051  Sum_probs=61.6

Q ss_pred             CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCce
Q 019699          101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~y  176 (337)
                      .+.++||+.|+|  .|.++..+++..+ .+|++++.+++-.+.+++.-..       .-+.....|..+.+++ + ++.+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~~~~~lGa~-------~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGAW-------QVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTCS-------EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHHHHHhcCCe-------EEEECCCCCHHHHHHHHhCCCCe
Confidence            345799998665  4567778888764 6899999999999999875311       1111112345555544 2 4668


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |+|+ |...     .       +.+.. ....|+++|.++...
T Consensus        99 d~v~-d~~g-----~-------~~~~~-~~~~l~~~G~~v~~g  127 (179)
T d1qora2          99 RVVY-DSVG-----R-------DTWER-SLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEE-ECSC-----G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred             EEEE-eCcc-----H-------HHHHH-HHHHHhcCCeeeecc
Confidence            9766 5431     1       11233 467899999887654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.15  E-value=1.2  Score=34.67  Aligned_cols=109  Identities=25%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             CeEEEEecch-h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          104 KTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       104 ~~VLiIG~G~-G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      |||-+||+|. | .++..++...-..++..+|++++..+.-..-+.... .+.+...++..+|-.+ +    ..-|+|++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~-~~~~~~~~~~~~d~~~-l----~~adiVVi   75 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-ANLEAHGNIVINDWAA-L----ADADVVIS   75 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GGSSSCCEEEESCGGG-G----TTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc-cccCCccceeccCHHH-h----ccccEEEE
Confidence            7899999874 3 334445544445789999999987543222222111 1123355666777322 2    34789988


Q ss_pred             eCCCCC--CCCCC---cCCc--hHHHHHHHhc---cccCCCceEEEeC
Q 019699          182 DLADPI--EGGPC---YKLY--TKSFYEFVVK---PRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~--~~~p~---~~L~--t~ef~~~~~~---~~L~p~Gvlv~~~  219 (337)
                      -+..+.  ...|.   ..|.  +...++. +.   ....|++++++-+
T Consensus        76 taG~~~~~~~~~g~~R~~l~~~N~~i~~~-i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          76 TLGNIKLQQDNPTGDRFAELKFTSSMVQS-VGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHH-HHHHHHHTTCCSEEEECS
T ss_pred             eccccccccccCCccHHHHHHHHHHHHHH-HHHHHhhcCCCeEEEEec
Confidence            654321  00111   1121  2334444 22   2457999977654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.09  E-value=0.51  Score=37.44  Aligned_cols=92  Identities=12%  Similarity=0.125  Sum_probs=58.9

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      .+.++||+.|+  |.|..+..++++.+ .+|++++.+++-.+.+++.-.        . .-+-..|..+.+.. .+.+|+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lGa--------~-~~i~~~~~~~~~~~-~~g~D~   94 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALGA--------E-EAATYAEVPERAKA-WGGLDL   94 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTTC--------S-EEEEGGGHHHHHHH-TTSEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccccccccccc--------c-eeeehhhhhhhhhc-cccccc
Confidence            56678999885  44667778888875 589999999888888887421        1 11222333333332 467998


Q ss_pred             EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      || |..     ++  .      +.. .-+.|+++|.++.-
T Consensus        95 v~-d~~-----G~--~------~~~-~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          95 VL-EVR-----GK--E------VEE-SLGLLAHGGRLVYI  119 (171)
T ss_dssp             EE-ECS-----CT--T------HHH-HHTTEEEEEEEEEC
T ss_pred             cc-ccc-----ch--h------HHH-HHHHHhcCCcEEEE
Confidence            86 543     22  1      133 35789999998754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.56  E-value=0.76  Score=35.42  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             eEEEEecch-h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~-G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~  181 (337)
                      ||.+||+|. | .++..++...-..++..+|++++..+....-+.... .....+.++.. +| .+-+    ...|+|++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~-~~~~~~~~i~~~~~-~~~~----~dadvvvi   75 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESG-PVGLFDTKVTGSND-YADT----ANSDIVII   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTH-HHHTCCCEEEEESC-GGGG----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhccc-chhcccceEEecCC-HHHh----cCCeEEEE
Confidence            689999873 2 234444444445689999999987664433221110 01123445543 44 3323    45799998


Q ss_pred             eCCCCC
Q 019699          182 DLADPI  187 (337)
Q Consensus       182 D~~dp~  187 (337)
                      -...|.
T Consensus        76 tag~~~   81 (142)
T d1guza1          76 TAGLPR   81 (142)
T ss_dssp             CCSCCC
T ss_pred             EEecCC
Confidence            876554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=89.17  E-value=0.36  Score=40.18  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=39.4

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      ..+..-|||--+|+|+++.++.+.  ..+-.++|+|++.+++|++.+
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence            356678999999999999998886  478999999999999999865

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.07  E-value=1.9  Score=36.37  Aligned_cols=75  Identities=23%  Similarity=0.371  Sum_probs=49.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.||+.|++.|   .+++.+++.  ..+|.+++.+++-++.+.+.+..      ..++.++..|..+      +++. 
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHH
Confidence            4678888887655   234455553  46899999999887766655432      2457777777632      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence              2367999998875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.97  E-value=0.29  Score=41.42  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh
Q 019699           99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV  148 (337)
Q Consensus        99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~  148 (337)
                      ...+..-|||--+|+|+++.++.+.  ..+..++|+|++.+++|++.+..
T Consensus       204 ~s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         204 LSHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HSCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHH
T ss_pred             hcCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH
Confidence            3456778999999999999998886  47899999999999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.91  E-value=0.31  Score=38.59  Aligned_cols=46  Identities=15%  Similarity=0.149  Sum_probs=36.1

Q ss_pred             CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699          101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      .+..+||++|+|+++. +..+++.....+|+++|.+++=.+.++++-
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G   73 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG   73 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence            4557899999887544 455556667789999999999999999863

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.83  E-value=3.3  Score=34.77  Aligned_cols=77  Identities=14%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      +.|.||+.|+..|   .+++.+++.  ..+|.+++.+++-++.+.+-+...     ...+..+..|..+      +++  
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~-----~~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREK-----GLNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeecCCHHHHHHHHHHH
Confidence            5688999998655   344555554  368999999998877666655432     3567777777631      222  


Q ss_pred             --hcCCceeEEEEeCCC
Q 019699          171 --SRKESYDVIIGDLAD  185 (337)
Q Consensus       171 --~~~~~yDvIi~D~~d  185 (337)
                        ......|+++..+..
T Consensus        78 ~~~~~g~idilinnag~   94 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAGV   94 (258)
T ss_dssp             HHHTTSCCCEEEECCCC
T ss_pred             HHHhCCCcEEEeccccc
Confidence              223568888887753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.60  E-value=2.3  Score=32.84  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=57.0

Q ss_pred             CCCCeEEEEecch-hHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          101 PNPKTIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ++.+||.+||+|. |... ..++...-..++..+|++++..+.-..-+... .. ......+..+|-.    .. ..-|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a-~~-~~~~~~~~~~d~~----~~-~~adi   75 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA-QA-FTAPKKIYSGEYS----DC-KDADL   75 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG-GG-GSCCCEEEECCGG----GG-TTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc-cc-ccCCceEeeccHH----Hh-ccccE
Confidence            4567999999875 4443 33444444568999999997654221111110 11 1334566777732    22 45799


Q ss_pred             EEEeCCCCCCCCCC-cCCch--H----HHHHHHhccccCCCceEEEeC
Q 019699          179 IIGDLADPIEGGPC-YKLYT--K----SFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       179 Ii~D~~dp~~~~p~-~~L~t--~----ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      |++-+..|...+.. ..+..  .    +.-+. ++ .-.|+|++++-+
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~-i~-~~~p~aivivvt  121 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKP-VV-DSGFDGIFLVAA  121 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHH-HH-HTTCCSEEEECS
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHH-Hh-hcCCCcEEEEeC
Confidence            99976544321211 12221  2    23333 22 357899877644

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.58  E-value=0.3  Score=39.50  Aligned_cols=96  Identities=14%  Similarity=0.211  Sum_probs=57.2

Q ss_pred             CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699          101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD  177 (337)
                      ++.++||+-|+  |-|.++..++++.+ .+|+++--+++-.+.+++.-...-  .+      +..+-.+.++. .++.||
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k~~~~~~lGa~~v--i~------~~~~~~~~~~~~~~~gvD  100 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVLGAKEV--LA------REDVMAERIRPLDKQRWA  100 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHTTCSEE--EE------CC---------CCSCCEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHHHHHHHhccccee--ee------cchhHHHHHHHhhccCcC
Confidence            44678999885  55677888888864 678888888888899987532110  00      01111122222 357899


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA  219 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~  219 (337)
                      +|+-...     +.        .+.. .-+.|+++|.++.-.
T Consensus       101 ~vid~vg-----g~--------~~~~-~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         101 AAVDPVG-----GR--------TLAT-VLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEECST-----TT--------THHH-HHHTEEEEEEEEECS
T ss_pred             EEEEcCC-----ch--------hHHH-HHHHhCCCceEEEee
Confidence            8774432     11        1333 457899999988654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.37  Score=38.82  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             CCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE-EEccHHHHHhhcCCcee
Q 019699          101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESRKESYD  177 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v-~~~D~~~~l~~~~~~yD  177 (337)
                      .+.++||+||+|+-+-  ...+.+ .+..+++.+..+++-++.+...+......+ +..+++ ...|-..+. +....+|
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~-~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~d   92 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFA-EALASAD   92 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHH-HHHHTCS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhh-cCCceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchh-hhhcccc
Confidence            4678999999974432  233444 467899999998766554443221100000 111222 222333332 2225689


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +||.-.+
T Consensus        93 iiIN~Tp   99 (182)
T d1vi2a1          93 ILTNGTK   99 (182)
T ss_dssp             EEEECSS
T ss_pred             eeccccC
Confidence            9997765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=1.9  Score=36.25  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      +.|.||+.|++.|   .+++.+++.  ..+|.+++.+++-++.+.+.+....   ...++..+..|..+      +++  
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHHH
Confidence            4578888888755   244555554  4689999999987776655544221   12467777777632      222  


Q ss_pred             -hcCCceeEEEEeCC
Q 019699          171 -SRKESYDVIIGDLA  184 (337)
Q Consensus       171 -~~~~~yDvIi~D~~  184 (337)
                       +.-++.|++|.++.
T Consensus        84 ~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          84 RSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHCCCSEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence             22367999998875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.22  E-value=0.86  Score=33.88  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEEC--------ChHHHHHHHhhhhh
Q 019699          101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDI--------DEEVVEFCKSYLVV  148 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEi--------d~~vi~~a~~~f~~  148 (337)
                      .+|++|++||+|--+ =....++.. ..+|+++|.        |+++.+..++.+..
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~   75 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRKFDESVINVLENDMKK   75 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhc-cccceeeehhccccccccHHHHHHHHHHHHh
Confidence            568999999998533 233344444 478999996        67777887777653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=2.5  Score=36.43  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.||+.|++.|   .+++.+++.  ..+|.+++.+++-++.+.+-+..........++..+..|..      ++++. 
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            5678888887655   234445553  46899999998877655544332111112457888888764      22222 


Q ss_pred             --cCCceeEEEEeCCC
Q 019699          172 --RKESYDVIIGDLAD  185 (337)
Q Consensus       172 --~~~~yDvIi~D~~d  185 (337)
                        .-++.|++|.++..
T Consensus        89 ~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCeEEEEeeccc
Confidence              23679999988753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.01  E-value=4  Score=32.77  Aligned_cols=110  Identities=13%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCCC-------CCCCeEEEEccHHHHHhhcCC
Q 019699          105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRKE  174 (337)
Q Consensus       105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~-------~d~rv~v~~~D~~~~l~~~~~  174 (337)
                      +|.+||+|-=+  ++..+++.  .-+|+++|+|++.++..++-- +.....+       ...+--....|..+.++    
T Consensus         2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~----   75 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL----   75 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH----
T ss_pred             EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh----
Confidence            68999999433  34444443  358999999999988766431 1110000       00111223344444443    


Q ss_pred             ceeEEEEeCCCCCCC-CCCcCCchHHHHHHH--hccccCCCceEEEeCC
Q 019699          175 SYDVIIGDLADPIEG-GPCYKLYTKSFYEFV--VKPRLNPEGIFVTQAG  220 (337)
Q Consensus       175 ~yDvIi~D~~dp~~~-~p~~~L~t~ef~~~~--~~~~L~p~Gvlv~~~~  220 (337)
                      ..|+|++..+.|... +-+..-+-....+.+  +.+.++++.++++.+.
T Consensus        76 ~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence            368888888755321 111111111222220  2345567778887764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.00  E-value=3.1  Score=32.75  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=39.3

Q ss_pred             CeEEEEecchhHH---HHHHHhcC---CCcEEEEEECChHHHHHH------HhhhhhccCCCCCCCeEE-EEccHHHHHh
Q 019699          104 KTIFIMGGGEGST---AREILRHK---TVEKVVMCDIDEEVVEFC------KSYLVVNKEAFSDPRLEL-VINDARAELE  170 (337)
Q Consensus       104 ~~VLiIG~G~G~~---~~~ll~~~---~~~~v~~VEid~~vi~~a------~~~f~~~~~~~~d~rv~v-~~~D~~~~l~  170 (337)
                      .+|-+||+|+.++   ...+++..   ...++..+|+|++..+..      ++.+...     +...++ ...|-.+-++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~td~~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKA-----GVPIEIHLTLDRRRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-----TCCCEEEEESCHHHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhc-----CCCceeeecCCchhhcC
Confidence            3789999985432   33344432   235899999998653221      1222211     122333 3344444443


Q ss_pred             hcCCceeEEEEeCC
Q 019699          171 SRKESYDVIIGDLA  184 (337)
Q Consensus       171 ~~~~~yDvIi~D~~  184 (337)
                          -.|+|++-+.
T Consensus        77 ----gaDvVv~ta~   86 (169)
T d1s6ya1          77 ----GADFVTTQFR   86 (169)
T ss_dssp             ----TCSEEEECCC
T ss_pred             ----CCCEEEEccc
Confidence                4699998875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.71  E-value=0.94  Score=36.01  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=61.7

Q ss_pred             CCCCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hhh-cCCce
Q 019699          101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES-RKESY  176 (337)
Q Consensus       101 ~~p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~-~~~~y  176 (337)
                      .+..+||+.|+++  |..+..++++.+ .+|.++.-+++-.+.+++.-...       -+.....|..+. ++. ..+.+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~~-------vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFDA-------AFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSE-------EEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhhhh-------hcccccccHHHHHHHHhhcCCC
Confidence            4568999988754  566788888765 68999999999888888863211       001011222232 222 34669


Q ss_pred             eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      |+|+ |..     +       .+.++. +.+.|+++|.++.-
T Consensus       100 d~v~-D~v-----G-------~~~~~~-~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYF-DNV-----G-------GEFLNT-VLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEE-ESS-----C-------HHHHHH-HGGGEEEEEEEEEC
T ss_pred             ceeE-Eec-----C-------chhhhh-hhhhccCCCeEEee
Confidence            9987 432     2       245666 68899999998864

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.57  E-value=4.3  Score=30.31  Aligned_cols=57  Identities=19%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCC
Q 019699          125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI  187 (337)
Q Consensus       125 ~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~  187 (337)
                      ...+|-+||=|+...+..++.+...+     =++ ....||.+-++...+.||+|++|..-|.
T Consensus         6 ~g~rILvVDD~~~~~~~l~~~L~~~G-----~~v-~~a~~g~eal~~l~~~~dlillD~~mP~   62 (134)
T d1dcfa_           6 TGLKVLVMDENGVSRMVTKGLLVHLG-----CEV-TTVSSNEECLRVVSHEHKVVFMDVCMPG   62 (134)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHCCTTCSEEEEECCSST
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHhhcCCCeEEEEeccCC
Confidence            35789999999999998888876431     123 3568888888766678999999997554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.51  E-value=1.7  Score=36.97  Aligned_cols=79  Identities=16%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+.+....  ....++..+..|..+      .++. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            4577888887665   345555554  4689999999988777666554321  123578888887532      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|+++.++.
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence              2257899999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.22  E-value=2.2  Score=35.87  Aligned_cols=78  Identities=22%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+-+....   .+.++..+..|..      ++++. 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            4577888887655   345555554  4689999999998877666543221   2356777777753      22222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++-
T Consensus        78 ~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          78 TERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHhCCCCEEEECCc
Confidence              2367999998874

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.19  E-value=2.1  Score=35.81  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-.+.+.+.+..      ..++..+..|..+      +++. 
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4567777776544   234444443  46899999999988877665532      2478888888742      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        77 ~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence              2367999998875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=4  Score=33.98  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=50.1

Q ss_pred             CCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---------Hh
Q 019699          103 PKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------LE  170 (337)
Q Consensus       103 p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---------l~  170 (337)
                      .|.||+-|++.|   .+++++++.  ..+|.+++.+++-++...+.+...     .+++..+..|..+.         +.
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            456666666554   244555554  468999999998776666555432     36788888887432         22


Q ss_pred             hcCCceeEEEEeCCCC
Q 019699          171 SRKESYDVIIGDLADP  186 (337)
Q Consensus       171 ~~~~~yDvIi~D~~dp  186 (337)
                      +.-+.-|++|.++...
T Consensus        80 ~~~g~idilinnag~~   95 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVV   95 (244)
T ss_dssp             HHTCCCSEEEECCCCC
T ss_pred             HHcCCCceeEeecccc
Confidence            2346799999888643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.62  E-value=0.34  Score=37.45  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.8

Q ss_pred             CCeEEEEecchhHH--HHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~  136 (337)
                      .|||++||+|..++  +.++.++.+..+|+++|-++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999997765  45666666667999999876

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.39  E-value=2.5  Score=31.19  Aligned_cols=72  Identities=19%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE--EccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~--~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      .+|-.||=|+.+.+..++++...      +..+++  ..||.+.++.. ..+||+|++|..-|.       +-..++.+.
T Consensus         2 irILivDD~~~~~~~l~~~L~~~------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~-------~dG~e~~~~   68 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQ------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH-------LDGLAVLER   68 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS-------SCHHHHHHH
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC-------CCHHHHHHH
Confidence            36889999999999999988642      334443  56776655432 357999999997443       344678887


Q ss_pred             HhccccCCC
Q 019699          204 VVKPRLNPE  212 (337)
Q Consensus       204 ~~~~~L~p~  212 (337)
                       +++.....
T Consensus        69 -ir~~~~~~   76 (123)
T d1dz3a_          69 -IRAGFEHQ   76 (123)
T ss_dssp             -HHHHCSSC
T ss_pred             -HHhcCCCC
Confidence             66555433

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.24  E-value=6  Score=30.88  Aligned_cols=110  Identities=15%  Similarity=0.253  Sum_probs=57.2

Q ss_pred             CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      ..+|-+||+|. |.. +..++...-..++..+|++++..+.-..-+... ..+......+..+|- +-+    ..-|+|+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~-~~~~~~~~~~~~~d~-~~~----~~adiVV   93 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG-SLFLQTPKIVADKDY-SVT----ANSKIVV   93 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGCCCSEEEECSSG-GGG----TTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc-ccccCCCeEEeccch-hhc----ccccEEE
Confidence            46999999985 444 344444444678999999987664322112111 111223334444552 222    4579999


Q ss_pred             EeCCCCCCCCCC-cCCch--HHHHHHH---hccccCCCceEEEeC
Q 019699          181 GDLADPIEGGPC-YKLYT--KSFYEFV---VKPRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~-~~L~t--~ef~~~~---~~~~L~p~Gvlv~~~  219 (337)
                      +-+..+...+.. ..+..  .+.++.+   ++ .-.|+|++++-+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~-~~~p~aiiivvt  137 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIV-KYSPDCIIIVVS  137 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHH-HHCTTCEEEECS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHH-hcCCCcEEEEeC
Confidence            887655422221 11221  1223221   22 247899977544

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=85.78  E-value=5  Score=29.29  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhc
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~  206 (337)
                      .+|-.||=|+.+.+..+..+...      ..+ ....+|.+.+.. .++||+|++|..-|.       +...++.+. ++
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~------g~v-~~~~~~~~al~~-~~~~dlillD~~mP~-------~~G~~~~~~-lr   66 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQL------GRV-KTFLTGEDFLND-EEAFHVVVLDVMLPD-------YSGYEICRM-IK   66 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTT------EEE-EEESSHHHHHHC-CSCCSEEEEESBCSS-------SBHHHHHHH-HH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhC------CEE-EEECCHHHHHhc-CCCCCEEEEeCcccc-------cchhHHHHH-Hh
Confidence            37899999999999999888532      123 456789999874 467999999987443       233567776 55


Q ss_pred             cccCCCc-eEEE
Q 019699          207 PRLNPEG-IFVT  217 (337)
Q Consensus       207 ~~L~p~G-vlv~  217 (337)
                      +. .+.= ++++
T Consensus        67 ~~-~~~~~ii~i   77 (120)
T d1p2fa2          67 ET-RPETWVILL   77 (120)
T ss_dssp             HH-CTTSEEEEE
T ss_pred             hc-CCCCcEEEE
Confidence            43 3433 4444

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.57  E-value=0.4  Score=39.81  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             CCeEEEEecchhHH-HHHHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~  136 (337)
                      |-+|+|||+|-.++ +..+++..+...|+++|-++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            56899999996555 44444455556899999765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.44  E-value=1.3  Score=34.18  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             CCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699          103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL  146 (337)
Q Consensus       103 p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f  146 (337)
                      .|+||+||+|. |. +++.|.++ + -+|+++|.+.+-.+...+.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~-g-~~V~v~dr~~~~a~~l~~~~   45 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS-G-IKVTVACRTLESAKKLSAGV   45 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-T-CEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEECChHHHHHHHhcc
Confidence            48999999973 32 34555554 3 48999999999887766554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=1.9  Score=33.07  Aligned_cols=97  Identities=10%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHH-HHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhc-CCcee
Q 019699          104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD  177 (337)
Q Consensus       104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~-~~~yD  177 (337)
                      .+++++|+|.-+  +++.+.+.  ..++++||.|++-. +.+.+..        ...+.++.||+.+  .|++. -++.|
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a~   73 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccCC
Confidence            369999997432  34444443  36799999998643 3333322        2468899999853  45543 36788


Q ss_pred             EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699          178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG  220 (337)
Q Consensus       178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~  220 (337)
                      .|++-..+..     ..+    ..-. ..+.+.|+-.+++...
T Consensus        74 ~vi~~~~~d~-----~n~----~~~~-~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          74 AILALSDNDA-----DNA----FVVL-SAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EEEECSSCHH-----HHH----HHHH-HHHHHTSSSCEEEECS
T ss_pred             EEEEccccHH-----HHH----HHHH-HHHHhCCCCceEEEEc
Confidence            8888765321     111    1111 2456777776776653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=4  Score=34.08  Aligned_cols=72  Identities=24%  Similarity=0.427  Sum_probs=48.2

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++...+-+         ++...+..|..+      ++++ 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHHH
Confidence            4678888888665   345555554  468999999998877665532         346677777532      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        74 ~~~~g~iDilVnnAG   88 (250)
T d1ydea1          74 IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEeccc
Confidence              2267999999885

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=85.07  E-value=1.4  Score=39.25  Aligned_cols=48  Identities=19%  Similarity=0.320  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEecchhHHHHHHHhcC-------CCcEEEEEECChHHHHHHHhhhh
Q 019699          100 HPNPKTIFIMGGGEGSTAREILRHK-------TVEKVVMCDIDEEVVEFCKSYLV  147 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~~~ll~~~-------~~~~v~~VEid~~vi~~a~~~f~  147 (337)
                      .+.+.+|+++|+|.|.+++-+++..       ...++..||+++...+.-++.+.
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            4566799999999999988776641       34578999999998887776554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.78  E-value=5.5  Score=33.24  Aligned_cols=76  Identities=13%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+.+...     ..++..+..|..      ++++. 
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSK-----GFKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeeCCCHHHHHHHHHHH
Confidence            5678888888755   345555554  468999999998877666655432     356777777763      22222 


Q ss_pred             ---cCCceeEEEEeCC
Q 019699          172 ---RKESYDVIIGDLA  184 (337)
Q Consensus       172 ---~~~~yDvIi~D~~  184 (337)
                         ...+.|++|.++-
T Consensus        80 ~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          80 ANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHTTTCCCEEEECCC
T ss_pred             HHHhCCCceEEEECCc
Confidence               2347999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.75  E-value=5.2  Score=33.23  Aligned_cols=78  Identities=15%  Similarity=0.256  Sum_probs=51.0

Q ss_pred             CCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh--
Q 019699          101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--  170 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~--  170 (337)
                      -+.|.+|+.|++.| +++++++.  ....+|.+++.+++-++.+.+.+...     ..++..+..|..+      +++  
T Consensus         8 lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           8 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF-----GYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            35677777787654 54444442  12468999999998887766655432     3577888888742      222  


Q ss_pred             -hcCCceeEEEEeCC
Q 019699          171 -SRKESYDVIIGDLA  184 (337)
Q Consensus       171 -~~~~~yDvIi~D~~  184 (337)
                       +.-++.|++|.++.
T Consensus        82 ~~~~g~iDilvnnag   96 (251)
T d2c07a1          82 LTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHCSCCCEEEECCC
T ss_pred             HHhcCCceeeeeccc
Confidence             23478999998875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=84.73  E-value=2.1  Score=33.84  Aligned_cols=74  Identities=14%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699          100 HPNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV  178 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv  178 (337)
                      ..+.++||++|+|+-+-+ .+.+.. ...+|+.+--+++-.+...+.|...      ..+.....|     ......+|+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR~~~~a~~l~~~~~~~------~~~~~~~~~-----~~~~~~~di   82 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANRTFSKTKELAERFQPY------GNIQAVSMD-----SIPLQTYDL   82 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGG------SCEEEEEGG-----GCCCSCCSE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccchHHHHHHHHHHHhhc------cccchhhhc-----cccccccce
Confidence            356789999999765432 222233 3478999999987666555554422      234444433     123467999


Q ss_pred             EEEeCCC
Q 019699          179 IIGDLAD  185 (337)
Q Consensus       179 Ii~D~~d  185 (337)
                      ||.-.+.
T Consensus        83 iIN~tp~   89 (171)
T d1p77a1          83 VINATSA   89 (171)
T ss_dssp             EEECCCC
T ss_pred             eeecccc
Confidence            9988763

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=84.68  E-value=2.6  Score=31.67  Aligned_cols=77  Identities=16%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE--EccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~--~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      .+|..||=++.+.+..++.+...      +.+.++  ..|+.+.++.. ..+||+|++|..-|.       .-..++.+.
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~------~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~-------~~G~el~~~   69 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMA------PDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-------MNGLETLDK   69 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTC------TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT-------SCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCC-------CCHHHHHHH
Confidence            47999999999999999887532      344443  67888776542 357999999997543       234577787


Q ss_pred             HhccccCCCceEEEe
Q 019699          204 VVKPRLNPEGIFVTQ  218 (337)
Q Consensus       204 ~~~~~L~p~Gvlv~~  218 (337)
                       +++ ..|..-+++-
T Consensus        70 -ir~-~~~~~~vivl   82 (138)
T d1a04a2          70 -LRE-KSLSGRIVVF   82 (138)
T ss_dssp             -HHH-SCCCSEEEEE
T ss_pred             -HHh-hCCCCCEEEE
Confidence             654 3455544443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=84.54  E-value=6.9  Score=29.82  Aligned_cols=111  Identities=18%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             CCeEEEEecch-h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699          103 PKTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII  180 (337)
Q Consensus       103 p~~VLiIG~G~-G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi  180 (337)
                      |.||-+||+|. | .++..++...-..++..+|++++..+.-..-+.... .+ .+..++...+-.+-+    ..-|+|+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~-~~~~~i~~~~~~~~~----~daDvVV   74 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SF-YPTVSIDGSDDPEIC----RDADMVV   74 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GG-STTCEEEEESCGGGG----TTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-cc-CCCceeecCCCHHHh----hCCcEEE
Confidence            67899999873 2 333344444445689999999987643221122111 11 123344433322222    2369999


Q ss_pred             EeCCCCCCCCCC-cCCc--hHHHHHHHhc--cccCCCceEEEeC
Q 019699          181 GDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQA  219 (337)
Q Consensus       181 ~D~~dp~~~~p~-~~L~--t~ef~~~~~~--~~L~p~Gvlv~~~  219 (337)
                      +-+..|...+.. ..|+  +.+.++.++.  ..-.|+|++++-+
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            987655421111 0111  1223333111  2347899876543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.42  E-value=4.5  Score=33.68  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=49.1

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-.+.+.+.+....    ..++..+..|..+      +++. 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKY----GVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHh----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4678888888755   345555554  4689999999887655444332111    2467777777632      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        78 ~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              2367999999875

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=84.42  E-value=3.2  Score=30.43  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHh
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV  205 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~  205 (337)
                      ++|-+||=|+.+.+..++.+...+  +   ++ ....|+.+.++.. ..+||+|++|..-|.       +-..++.+. +
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g--~---~v-~~a~~g~eal~~~~~~~~dlillD~~mP~-------~~G~el~~~-l   67 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEG--Y---QT-FQAANGLQALDIVTKERPDLVLLDMKIPG-------MDGIEILKR-M   67 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTT--C---EE-EEESSHHHHHHHHHHHCCSEEEEESCCTT-------CCHHHHHHH-H
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcC--C---EE-EEeCCHHHHHHHHHhCCCCEEEEeccCCC-------CCHHHHHHH-H
Confidence            689999999999999999886431  1   22 3566777665432 357999999987553       234577887 6


Q ss_pred             ccccCCCc-eEEE
Q 019699          206 KPRLNPEG-IFVT  217 (337)
Q Consensus       206 ~~~L~p~G-vlv~  217 (337)
                      ++. .++- ++++
T Consensus        68 r~~-~~~~pvi~l   79 (119)
T d1peya_          68 KVI-DENIRVIIM   79 (119)
T ss_dssp             HHH-CTTCEEEEE
T ss_pred             HHh-CCCCcEEEE
Confidence            543 4443 4443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.12  E-value=7.1  Score=29.64  Aligned_cols=109  Identities=21%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             eEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~  181 (337)
                      ||-+||+|. |.. +..++...-..++..+|++++..+.-..-+.... .+-+.+.++.. +| .+-+    ..-|+|++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~-~~~~~~~~i~~~~d-~~~~----~~adiVvi   75 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA-AGIDKYPKIVGGAD-YSLL----KGSEIIVV   75 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH-HTTTCCCEEEEESC-GGGG----TTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhc-cccCCCCccccCCC-HHHh----ccccEEEE
Confidence            688999863 333 3333334445789999999988653221121100 01122334444 34 2322    45899999


Q ss_pred             eCCCCCCCCCCc-CCc--hHHHHHHHhc--cccCCCceEEEeC
Q 019699          182 DLADPIEGGPCY-KLY--TKSFYEFVVK--PRLNPEGIFVTQA  219 (337)
Q Consensus       182 D~~dp~~~~p~~-~L~--t~ef~~~~~~--~~L~p~Gvlv~~~  219 (337)
                      .+..|...++.. .++  +...++.++.  ....|++++++-+
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            886554322211 111  1122222111  2347899877654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.93  E-value=6.7  Score=32.50  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             CeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHh---h
Q 019699          104 KTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE---S  171 (337)
Q Consensus       104 ~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~---~  171 (337)
                      |-+|+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+-+...     ..++..+..|..+      +++   +
T Consensus         3 KValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREA-----GVEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            44566676544   234444443  468999999998877766655432     3578888877632      222   2


Q ss_pred             cCCceeEEEEeCCC
Q 019699          172 RKESYDVIIGDLAD  185 (337)
Q Consensus       172 ~~~~yDvIi~D~~d  185 (337)
                      .-++.|++|.++-.
T Consensus        76 ~~g~iDilVnnAG~   89 (257)
T d2rhca1          76 RYGPVDVLVNNAGR   89 (257)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             HhCCCCEEEecccc
Confidence            24689999988753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.82  E-value=4.8  Score=33.51  Aligned_cols=75  Identities=17%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             CeE-EEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HH---hh
Q 019699          104 KTI-FIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------EL---ES  171 (337)
Q Consensus       104 ~~V-LiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l---~~  171 (337)
                      ||| |+-|++ ++++++++++  ....+|.+++.+++-++...+-+...     ..++..+..|..+      ++   .+
T Consensus         1 KKValITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (255)
T d1gega_           1 KKVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-----GGHAVAVKVDVSDRDQVFAAVEQARK   74 (255)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            466 555654 5554444432  12468999999998887766655432     3577888888642      22   22


Q ss_pred             cCCceeEEEEeCC
Q 019699          172 RKESYDVIIGDLA  184 (337)
Q Consensus       172 ~~~~yDvIi~D~~  184 (337)
                      .-++.|++|.++.
T Consensus        75 ~~g~iDilVnnAG   87 (255)
T d1gega_          75 TLGGFDVIVNNAG   87 (255)
T ss_dssp             HTTCCCEEEECCC
T ss_pred             HhCCccEEEeccc
Confidence            3468999998875

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=83.72  E-value=2.9  Score=30.74  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE-EEccHHHHHhhc--CCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v-~~~D~~~~l~~~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      .+|-+||=|+.+.+..++++...       ..++ ...++.+.++..  ...||+||+|..-|.       .-..++.+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~-------g~~v~~~~~~~~al~~l~~~~~~dliilD~~lp~-------~~G~el~~~   68 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQL-------GAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVD-------LSIFSLLDI   68 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHT-------TCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTT-------SCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHhc-------CCCeEEECCHHHHHHHHHhcCCCCEEEEeCCCCC-------CCHHHHHHH
Confidence            57999999999999999988643       2233 455777766532  246999999987553       224577787


Q ss_pred             HhccccCCCceEEEe
Q 019699          204 VVKPRLNPEGIFVTQ  218 (337)
Q Consensus       204 ~~~~~L~p~Gvlv~~  218 (337)
                       +++.-..-.++++-
T Consensus        69 -ir~~~~~~pii~lt   82 (118)
T d2b4aa1          69 -VKEQTKQPSVLILT   82 (118)
T ss_dssp             -HTTSSSCCEEEEEE
T ss_pred             -HHhcCCCCcEEEEE
Confidence             67654444555553

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.54  E-value=5.1  Score=33.79  Aligned_cols=77  Identities=19%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---------HH
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------EL  169 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---------~l  169 (337)
                      +.|.||+-|++.|   .+++.+++.  ..+|++++.+++-++.+.+-+....    ..++..+..|..+         .+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~----g~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQT----GNKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHH----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhc----CCceEEEEecccChHHHHHHhhhh
Confidence            3578888887655   345555553  4789999999887655444332111    2456677766632         22


Q ss_pred             hhcCCceeEEEEeCC
Q 019699          170 ESRKESYDVIIGDLA  184 (337)
Q Consensus       170 ~~~~~~yDvIi~D~~  184 (337)
                      .....+.|+++..+.
T Consensus        98 ~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          98 IKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHTCSCSEEEECCC
T ss_pred             hhhccccchhhhhhh
Confidence            233578999998875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.51  E-value=2.2  Score=33.65  Aligned_cols=110  Identities=13%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             eEEEEecch-hHH-HHHHHhcCCCcEEE-EEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699          105 TIFIMGGGE-GST-AREILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG  181 (337)
Q Consensus       105 ~VLiIG~G~-G~~-~~~ll~~~~~~~v~-~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~  181 (337)
                      ||.+||+|. |.. .+.+.+ .+..+++ ++|.|++-.+...+.+..       +...-+..|..+.+.+  ...|+|++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~-~~~~~i~ai~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~--~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHL-APNATISGVASRSLEKAKAFATANNY-------PESTKIHGSYESLLED--PEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHH-CTTEEEEEEECSSHHHHHHHHHHTTC-------CTTCEEESSHHHHHHC--TTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHh-CCCCEEEEEEeCCccccccchhcccc-------ccceeecCcHHHhhhc--cccceeee
Confidence            789999985 322 333433 3456777 559998765544333322       1222246787787764  46999998


Q ss_pred             eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699          182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ  240 (337)
Q Consensus       182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~  240 (337)
                      -++..      .+      ++. +..+|+.|=-+.+.-  |. ..+.+..+++.+..++
T Consensus        73 ~tp~~------~h------~~~-~~~~l~~g~~v~~EK--P~-~~~~~e~~~l~~~~~~  115 (184)
T d1ydwa1          73 PLPTS------LH------VEW-AIKAAEKGKHILLEK--PV-AMNVTEFDKIVDACEA  115 (184)
T ss_dssp             CCCGG------GH------HHH-HHHHHTTTCEEEECS--SC-SSSHHHHHHHHHHHHT
T ss_pred             cccch------hh------cch-hhhhhhccceeeccc--cc-ccCHHHHHHHHHHHHh
Confidence            65421      11      222 344555443333332  31 3455666666666554

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=83.40  E-value=4.9  Score=30.24  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhc
Q 019699          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (337)
Q Consensus       128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~  206 (337)
                      +|-.||=|+.+.+..+.++...+     -.+ ....|+.+.+... ...||+|++|..-|.       +-..++.+. ++
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v-~~~~~~~~al~~l~~~~~dlil~D~~mP~-------~~G~el~~~-lr   67 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAG-----FTV-SSFASATEALAGLSADFAGIVISDIRMPG-------MDGLALFRK-IL   67 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESCHHHHHHTCCTTCCSEEEEESCCSS-------SCHHHHHHH-HH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCC-----CEE-EEeCChHHHHHHHhccCcchHHHhhccCC-------CCHHHHHHH-HH
Confidence            58899999999999999886431     123 3457888877654 467999999987543       334578887 66


Q ss_pred             cccCCCceEEE
Q 019699          207 PRLNPEGIFVT  217 (337)
Q Consensus       207 ~~L~p~Gvlv~  217 (337)
                      +. .|+--+++
T Consensus        68 ~~-~~~~pvI~   77 (140)
T d1qkka_          68 AL-DPDLPMIL   77 (140)
T ss_dssp             HH-CTTSCEEE
T ss_pred             Hh-CCCCcEEE
Confidence            54 45543333

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.39  E-value=4.2  Score=33.91  Aligned_cols=74  Identities=23%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++.+.+-+        .+++..+..|..      ++++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~--------~~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAAEI--------GPAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh--------CCceEEEEeeCCCHHHHHHHHHHH
Confidence            4578888887655   345555554  478999999988766544433        246777777763      22222 


Q ss_pred             --cCCceeEEEEeCCC
Q 019699          172 --RKESYDVIIGDLAD  185 (337)
Q Consensus       172 --~~~~yDvIi~D~~d  185 (337)
                        .-++.|++|.++..
T Consensus        74 ~~~~g~iDilVnnAg~   89 (256)
T d1k2wa_          74 LDRWGSIDILVNNAAL   89 (256)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCccEEEeeccc
Confidence              23679999998763

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=82.95  E-value=6.9  Score=28.60  Aligned_cols=78  Identities=18%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHh
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV  205 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~  205 (337)
                      .+|-.||=|+.+.+..++++...+     =++. ...++.+.++.. ..+||+|++|..-|.       .-..++++. +
T Consensus         4 ~~ILiVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~al~~~~~~~~dlvi~D~~mp~-------~~G~e~~~~-l   69 (123)
T d1dbwa_           4 YTVHIVDDEEPVRKSLAFMLTMNG-----FAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPD-------MSGVELLRN-L   69 (123)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHTT-----CEEE-EESCHHHHHHHGGGCCSEEEEEECCSTT-------SCHHHHHHH-H
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHhhcCCcEEEEeccCcc-------ccchHHHHH-H
Confidence            479999999999999999886531     1333 456777766543 467999999997543       334588887 6


Q ss_pred             ccccCCCceEEEeC
Q 019699          206 KPRLNPEGIFVTQA  219 (337)
Q Consensus       206 ~~~L~p~Gvlv~~~  219 (337)
                      ++ ..|+-.+++-+
T Consensus        70 r~-~~~~~~iI~lt   82 (123)
T d1dbwa_          70 GD-LKINIPSIVIT   82 (123)
T ss_dssp             HH-TTCCCCEEEEE
T ss_pred             Hh-cCCCCeEEEEE
Confidence            65 45555444444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.89  E-value=2  Score=36.36  Aligned_cols=77  Identities=16%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             CCeEEEEecchhHHHHHHHhcC---CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------H---Hh
Q 019699          103 PKTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------E---LE  170 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~~ll~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~---l~  170 (337)
                      .+||.+|=||+.+++++++++.   ...+|.++..+++-.+.+.+.+...     .++++++..|..+      +   +.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-----GLSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEEecCCHHHHHHHHHHHH
Confidence            5788777666666665554431   2468999999999888777766532     3578888888732      2   22


Q ss_pred             hcCCceeEEEEeCC
Q 019699          171 SRKESYDVIIGDLA  184 (337)
Q Consensus       171 ~~~~~yDvIi~D~~  184 (337)
                      +.-++.|++|.++-
T Consensus        77 ~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          77 KEYGGLDVLVNNAG   90 (275)
T ss_dssp             HHHSSEEEEEECCC
T ss_pred             HhcCCcEEEEEcCC
Confidence            22368999999985

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=82.88  E-value=0.46  Score=39.31  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             CCCCeEEEEecchhHHHHH-HHhcCCCcEEEEEECCh
Q 019699          101 PNPKTIFIMGGGEGSTARE-ILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       101 ~~p~~VLiIG~G~G~~~~~-ll~~~~~~~v~~VEid~  136 (337)
                      |..+||+|||+|-.+++.. .++.. ..+|+++|-++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~   37 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSP   37 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            6778999999997766433 33333 46899999754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.82  E-value=0.47  Score=37.53  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             CCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHH
Q 019699          102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVE  140 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~  140 (337)
                      .++||++||+|-.++  +.++.++ +...|+++|-.+.+-.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            478999999997765  4555554 4446999998776533

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.76  E-value=0.55  Score=38.59  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CCeEEEEecchhHHHH-HHHhcCCCcEEEEEECCh
Q 019699          103 PKTIFIMGGGEGSTAR-EILRHKTVEKVVMCDIDE  136 (337)
Q Consensus       103 p~~VLiIG~G~G~~~~-~ll~~~~~~~v~~VEid~  136 (337)
                      .|||+|||+|-++++. ..++.. ..+|+++|-++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            3799999999666532 333333 45899999653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=82.66  E-value=4.6  Score=33.77  Aligned_cols=73  Identities=22%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.||+.|++.|   .+++++++.  ..+|.+++.+++-++...+-+.        .++..+..|..      ++++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELG--------DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC--------CceEEEEcccCCHHHHHHHHHHH
Confidence            4688999998766   455666664  4689999999877665544332        35677777763      22222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        74 ~~~~g~iDilVnnAg   88 (254)
T d1hdca_          74 REEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCccEEEecCc
Confidence              2367999998875

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=82.58  E-value=2.5  Score=31.01  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE--EEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699          127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF  203 (337)
Q Consensus       127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v--~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~  203 (337)
                      ++|-.||=|+.+.+..+.++...       .+++  ...|+.+.++.. ..+||+|++|..-|.       .-..++.+.
T Consensus         2 krILivDD~~~~~~~l~~~L~~~-------g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~-------~~G~e~~~~   67 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKA-------GYEVAGEATNGREAVEKYKELKPDIVTMDITMPE-------MNGIDAIKE   67 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGG-------GCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHc-------CCceEEEECCHHHHHHHHHhccCCEEEEecCCCC-------CCHHHHHHH
Confidence            57999999999999999988642       3443  347887766442 357999999986443       234577777


Q ss_pred             HhccccCCCc-eEEE
Q 019699          204 VVKPRLNPEG-IFVT  217 (337)
Q Consensus       204 ~~~~~L~p~G-vlv~  217 (337)
                       +++. .++= ++++
T Consensus        68 -ir~~-~~~~pvi~l   80 (118)
T d1u0sy_          68 -IMKI-DPNAKIIVC   80 (118)
T ss_dssp             -HHHH-CTTCCEEEE
T ss_pred             -HHHh-CCCCcEEEE
Confidence             5543 3443 4443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.40  E-value=2.9  Score=32.38  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             CeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       104 ~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      .||-+||+|. |.....++...+..++..+|++++..+.-..-+... ..+...+.++...+-.+-+    ..-|+|++-
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~-~~~~~~~~~v~~~~~~~~~----~~advvvit   78 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHT-NVMAYSNCKVSGSNTYDDL----AGADVVIVT   78 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTH-HHHHTCCCCEEEECCGGGG----TTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhh-ccccCCCcEEEeccccccc----CCCcEEEEe
Confidence            5899999874 233333444445778999999997765432222110 0011123344433322222    347888887


Q ss_pred             CCCCC
Q 019699          183 LADPI  187 (337)
Q Consensus       183 ~~dp~  187 (337)
                      ...+.
T Consensus        79 ag~~~   83 (150)
T d1t2da1          79 AGFTK   83 (150)
T ss_dssp             CSCSS
T ss_pred             ccccc
Confidence            76443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.37  E-value=1.9  Score=32.06  Aligned_cols=47  Identities=26%  Similarity=0.411  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh--------HHHHHHHhhhhh
Q 019699          101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE--------EVVEFCKSYLVV  148 (337)
Q Consensus       101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~--------~vi~~a~~~f~~  148 (337)
                      ..|+++++||+|- |.=...++... ..+|+++|..+        ++.+.++++|..
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~   76 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIGASMDGEVAKATQKFLKK   76 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSSSSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhh-CcceeEEEeccccchhhhhhhHHHHHHHHHh
Confidence            4579999999983 33333333434 47899998654        777777777753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=8.1  Score=31.78  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhhc
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELESR  172 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~~  172 (337)
                      +.|.||+.|++.|   .+++.+++.  ..+|.+++.+++-++...+.+         +.+..+..|..      +.+++ 
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~-   73 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALGS-   73 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHTT-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHHH-
Confidence            5689999998765   445555554  468999999998776655432         23455555542      23332 


Q ss_pred             CCceeEEEEeCCC
Q 019699          173 KESYDVIIGDLAD  185 (337)
Q Consensus       173 ~~~yDvIi~D~~d  185 (337)
                      -++.|++|.++..
T Consensus        74 ~g~iDilVnnAg~   86 (244)
T d1pr9a_          74 VGPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             hCCceEEEecccc
Confidence            3689999988753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.82  E-value=1.8  Score=36.68  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=51.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.+|+.|++.|   .+++.+++.  ..+|.+++.+++-++.+.+-+...  .....++..+..|..+      +++. 
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~--~~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc--CCCCCceEEEEccCCCHHHHHHHHHHH
Confidence            4577888887655   345555554  368999999998877766655321  1224578888887632      2222 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence              2367999999875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.42  E-value=4.7  Score=33.72  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=50.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.||+-|++.|   .+++.+++.  ..+|..++.+++-++.+.+-+...     ..++..+..|..      +.++. 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKK-----GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEeccCCCHHHHHHHHHHH
Confidence            4678888887655   245555554  468999999998776665554432     346788877763      22222 


Q ss_pred             ---cCCceeEEEEeCC
Q 019699          172 ---RKESYDVIIGDLA  184 (337)
Q Consensus       172 ---~~~~yDvIi~D~~  184 (337)
                         ..++.|+++.++.
T Consensus        80 ~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          80 SSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHTTCCSEEEEECC
T ss_pred             HHHhCCCccccccccc
Confidence               2367999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.31  E-value=3.9  Score=34.17  Aligned_cols=76  Identities=13%  Similarity=0.112  Sum_probs=47.5

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhh-hhccCCCCCCCeEEEEccHHH------H---
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFSDPRLELVINDARA------E---  168 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~~d~rv~v~~~D~~~------~---  168 (337)
                      +.|.||+-|++.|   .+++.+++.  ..+|.+++.+++-.+.+.+.+ ...     ..++..+..|..+      .   
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHH
Confidence            5678888887655   244555554  468999999986554333322 211     2467778877632      2   


Q ss_pred             HhhcCCceeEEEEeCC
Q 019699          169 LESRKESYDVIIGDLA  184 (337)
Q Consensus       169 l~~~~~~yDvIi~D~~  184 (337)
                      +.+.-++.|++|.++.
T Consensus        81 ~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          81 IDADLGPISGLIANAG   96 (260)
T ss_dssp             HHHHSCSEEEEEECCC
T ss_pred             HHHHhCCCcEeccccc
Confidence            2223478999998875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=81.27  E-value=0.82  Score=36.89  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             hcCCCCCeEEEEecchhHHHHH-HHhcCCCcEEEEEECChHH
Q 019699           98 LHHPNPKTIFIMGGGEGSTARE-ILRHKTVEKVVMCDIDEEV  138 (337)
Q Consensus        98 ~~~~~p~~VLiIG~G~G~~~~~-ll~~~~~~~v~~VEid~~v  138 (337)
                      .....+++|++||+|-.++... .++.. .-+|+++|-++.+
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEI   78 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCcc
Confidence            3446789999999998776433 23333 4689999988753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.01  E-value=0.41  Score=37.14  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=52.4

Q ss_pred             eEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699          105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD  182 (337)
Q Consensus       105 ~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D  182 (337)
                      ||++||+|. |+. +..|++.  ..+|++++.++.-.+..+    ..... .......+..+..+.+    ..+|+||+-
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~----~~~D~iii~   70 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVN----LVETD-GSIFNESLTANDPDFL----ATSDLLLVT   70 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEE----EECTT-SCEEEEEEEESCHHHH----HTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhc----cccCC-ccccccccccchhhhh----cccceEEEe
Confidence            799999986 333 4444443  368999998875222110    00000 0111222333333333    359999997


Q ss_pred             CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699          183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT  217 (337)
Q Consensus       183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~  217 (337)
                      ...         ..+.+..+. ++.+++++..++.
T Consensus        71 vka---------~~~~~~~~~-l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          71 LKA---------WQVSDAVKS-LASTLPVTTPILL   95 (167)
T ss_dssp             SCG---------GGHHHHHHH-HHTTSCTTSCEEE
T ss_pred             ecc---------cchHHHHHh-hccccCcccEEee
Confidence            642         125677887 7889998886554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=80.70  E-value=0.32  Score=39.37  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=49.8

Q ss_pred             CCCeEEEEecc---hhHHHHHHHhcCCCcEEEEEECC---hHHHHHHHhhhhhccCCCCCCCeEEEEcc----------H
Q 019699          102 NPKTIFIMGGG---EGSTAREILRHKTVEKVVMCDID---EEVVEFCKSYLVVNKEAFSDPRLELVIND----------A  165 (337)
Q Consensus       102 ~p~~VLiIG~G---~G~~~~~ll~~~~~~~v~~VEid---~~vi~~a~~~f~~~~~~~~d~rv~v~~~D----------~  165 (337)
                      +..+||++.+|   .|..+..++++.+...|.+|.-.   ++..+.++++-..          .++..|          .
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad----------~vi~~~~~~~~~~~~~v   97 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT----------QVITEDQNNSREFGPTI   97 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS----------EEEEHHHHHCGGGHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc----------EEEeccccchhHHHHHH
Confidence            34689998433   34566777887765444455333   3344555543111          122211          1


Q ss_pred             HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699          166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ  218 (337)
Q Consensus       166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~  218 (337)
                      .+......+..|+|+ |..     +.       +.+.. ..+.|+++|.++.-
T Consensus        98 ~~~~~~~g~~vdvv~-D~v-----g~-------~~~~~-~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          98 KEWIKQSGGEAKLAL-NCV-----GG-------KSSTG-IARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHTCCEEEEE-ESS-----CH-------HHHHH-HHHTSCTTCEEEEC
T ss_pred             HHHHhhccCCceEEE-ECC-----Cc-------chhhh-hhhhhcCCcEEEEE
Confidence            122222356799988 542     21       23344 46789999998864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.59  E-value=6.5  Score=32.60  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-  171 (337)
                      +.|.+|+-|++.|   .+++.+++.  ..+|.+++.+++-++...+.+.        .+...+..|..      +++++ 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHHH
Confidence            4578888888765   345555554  4689999999988776655442        24566666653      22322 


Q ss_pred             --cCCceeEEEEeCC
Q 019699          172 --RKESYDVIIGDLA  184 (337)
Q Consensus       172 --~~~~yDvIi~D~~  184 (337)
                        .-++.|++|.++.
T Consensus        75 ~~~~g~idilinnAG   89 (244)
T d1nffa_          75 VTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCeEEEECCc
Confidence              2357999999886

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=2.4  Score=33.18  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699          100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD  177 (337)
Q Consensus       100 ~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD  177 (337)
                      ..+.++||+||+|+-+-  ...+.+. + .+|+.+.-+++-.+...+.|...      ..++...-|     ......+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~-g-~~i~I~nRt~~ka~~l~~~~~~~------~~~~~~~~~-----~~~~~~~d   81 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSL-D-CAVTITNRTVSRAEELAKLFAHT------GSIQALSMD-----ELEGHEFD   81 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSHHHHHHHHHHTGGG------SSEEECCSG-----GGTTCCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhccc-c-eEEEeccchHHHHHHHHHHHhhc------ccccccccc-----cccccccc
Confidence            35678999999976542  3334443 4 36999999887665544444321      123332222     11235799


Q ss_pred             EEEEeCC
Q 019699          178 VIIGDLA  184 (337)
Q Consensus       178 vIi~D~~  184 (337)
                      +||.-.+
T Consensus        82 liIN~Tp   88 (170)
T d1nyta1          82 LIINATS   88 (170)
T ss_dssp             EEEECCS
T ss_pred             eeecccc
Confidence            9987765

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=6.9  Score=28.42  Aligned_cols=76  Identities=16%  Similarity=0.017  Sum_probs=48.3

Q ss_pred             EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhc
Q 019699          128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK  206 (337)
Q Consensus       128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~  206 (337)
                      +|-+||=|+.+.+..++.+...+  +   .+ ....+|.+-+... ..+||+|++|..-|.       .-..++.+. ++
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G--~---~v-~~a~~g~eal~~l~~~~~dliilD~~mP~-------~~G~e~~~~-i~   67 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAG--H---QV-DDAEDAKEADYYLNEHIPDIAIVDLGLPD-------EDGLSLIRR-WR   67 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTT--C---EE-EEESSHHHHHHHHHHSCCSEEEECSCCSS-------SCHHHHHHH-HH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCC--C---EE-EEECCHHHHHHHHHhcccceeehhccCCC-------chhHHHHHH-HH
Confidence            68899999999999999886431  1   12 2456665554332 367999999997554       223477777 66


Q ss_pred             cccCCCceEEE
Q 019699          207 PRLNPEGIFVT  217 (337)
Q Consensus       207 ~~L~p~Gvlv~  217 (337)
                      +.-..--++++
T Consensus        68 ~~~~~~pvi~l   78 (119)
T d2pl1a1          68 SNDVSLPILVL   78 (119)
T ss_dssp             HTTCCSCEEEE
T ss_pred             hcCcccceEee
Confidence            54332234443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=3.1  Score=34.75  Aligned_cols=79  Identities=20%  Similarity=0.307  Sum_probs=49.9

Q ss_pred             CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699          102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-  171 (337)
Q Consensus       102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-  171 (337)
                      +.|.||+-|++.|   .+++.+++.  ..+|.+++.+++-.+.+.+-+...   ....++..+..|..+      +++. 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence            4577888887654   234444443  478999999998777665544321   123577888888643      2222 


Q ss_pred             --cCCceeEEEEeCCC
Q 019699          172 --RKESYDVIIGDLAD  185 (337)
Q Consensus       172 --~~~~yDvIi~D~~d  185 (337)
                        .-++.|++|.++..
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence              23679999988863

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.03  E-value=6.4  Score=32.74  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=49.4

Q ss_pred             CCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hh---
Q 019699          102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE---  170 (337)
Q Consensus       102 ~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~---  170 (337)
                      +.|.+|+-|++. +++++++++  ....+|.+++.+++-++.+.+-+...     ..++..+..|..+.      ++   
T Consensus        10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~-----g~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            467777777654 444444432  13478999999998877766655432     35778888886432      22   


Q ss_pred             hcCCceeEEEEeCC
Q 019699          171 SRKESYDVIIGDLA  184 (337)
Q Consensus       171 ~~~~~yDvIi~D~~  184 (337)
                      +.-++.|+++.++.
T Consensus        84 ~~~g~iDilvnnAG   97 (255)
T d1fmca_          84 SKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHSSCCEEEECCC
T ss_pred             HHcCCCCEeeeCCc
Confidence            12367999998875