Citrus Sinensis ID: 019703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MEFEAEATTVNFGRSIIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
ccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccc
cccHHHHHHcccccccccHHHHHHHHccccccccHcEcccccccccccccccccccEEEHHHHccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHEEccccccc
mefeaeattvnfgrsiivpsvqeltnetiinvppryvrtdqdppsvtadtwlpsvplidlqkLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQsmrmnyyppcpqpdkvigfsphsDADALTILLQLddtqglqirnqgrwvpvkplpnafvinIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSsridselgpapsligpsnpaifrrmpLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
mefeaeattvnfgrsiivpsvqeltnetiinvppryvrtdQDPPSVtadtwlpsvpliDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIrnqgrwvpvkplPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDselgpapsligpsnPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
MEFEAEATTVNFGRSIIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
********TVNFGRSIIVPSVQELTNETIINVPPRYVRTD****SVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLE******************************************YYP*C****KVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRI**********I***NPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDL*****
***************IIVPSVQELTNETIINVPPRYVRT**************SVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFM**D******
********TVNFGRSIIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
**********NFGRSIIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDL*****
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MEFEAEATTVNFGRSIIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRVDLNKVNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.937 0.882 0.525 1e-102
D4N502360 Codeine O-demethylase OS= N/A no 0.943 0.883 0.476 1e-94
D4N501364 Probable 2-oxoglutarate/F N/A no 0.961 0.890 0.473 1e-93
D4N500364 Thebaine 6-O-demethylase N/A no 0.964 0.892 0.450 8e-88
A2A1A0352 S-norcoclaurine synthase N/A no 0.910 0.872 0.4 4e-69
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.807 0.753 0.356 1e-45
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.798 0.745 0.362 3e-45
O04707365 Gibberellin 20 oxidase 1- N/A no 0.801 0.739 0.319 4e-41
O04705361 Gibberellin 20 oxidase 1- N/A no 0.801 0.747 0.319 4e-41
Q9LTH8364 1-aminocyclopropane-1-car no no 0.810 0.75 0.332 1e-40
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/348 (52%), Positives = 244/348 (70%), Gaps = 32/348 (9%)

Query: 15  SIIVPSVQELTNE-TIINVPPRYVRTDQDPPSVTADTWLP-SVPLIDLQKLVDDVRAD-E 71
           SI+VPSVQE+  E TI  VPPRYVR+DQD   V  D  +   +P+ID+++L      D E
Sbjct: 11  SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query: 72  LERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQL 131
           +E+L  +C+EWGFFQ++NHG+ SS L+K+K EI++FF LP EEKKK WQ  D  EGFGQ 
Sbjct: 71  VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query: 132 FVVSEEQKLDW---------------------------ETLESYSAEMKKLAMTILGHMA 164
           FVVSE+QKLDW                           +TLE YS+E++ +A  ++  MA
Sbjct: 131 FVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190

Query: 165 KALRMDGEEMRDLFSD--GVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQG 222
           +AL +  EE+  LF D   VQSMRMNYYPPCPQPD+VIG +PHSD+  LT+L+Q++D +G
Sbjct: 191 RALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEG 250

Query: 223 LQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSR 282
           LQI+  G+WVPVKPLPNAF++NIGD++EI++NG YRSIEHR +VNS KERLSIATF++  
Sbjct: 251 LQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVG 310

Query: 283 IDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 330
           +  E+GPA SL+     A F+R+ ++EY    F+R L+GKAYLD +R+
Sbjct: 311 MYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
225462503369 PREDICTED: protein SRG1-like [Vitis vini 0.973 0.888 0.670 1e-138
297740613 492 unnamed protein product [Vitis vinifera] 0.973 0.666 0.670 1e-138
224106557363 predicted protein [Populus trichocarpa] 0.979 0.909 0.644 1e-137
255557477363 Flavonol synthase/flavanone 3-hydroxylas 0.976 0.906 0.658 1e-135
359483586365 PREDICTED: LOW QUALITY PROTEIN: protein 0.976 0.901 0.614 1e-128
449433644364 PREDICTED: protein SRG1-like [Cucumis sa 0.973 0.901 0.617 1e-125
255584517368 Flavonol synthase/flavanone 3-hydroxylas 0.964 0.883 0.595 1e-120
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 0.973 0.896 0.523 1e-110
224061385355 predicted protein [Populus trichocarpa] 0.964 0.915 0.542 1e-109
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.931 0.862 0.559 1e-108
>gi|225462503|ref|XP_002268794.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 284/361 (78%), Gaps = 33/361 (9%)

Query: 4   EAEATTVNFGRSIIVPSVQELTNETIINVPPRYVRTDQD-----PPSVTADTWLPSVPLI 58
           E E+  V FG+SIIVPSV+EL  E I  VPPRYV   QD       +  AD WL SVP+I
Sbjct: 2   ETESHQVVFGKSIIVPSVRELVKEPITKVPPRYVHNQQDLQMAAAAAAAADIWLQSVPVI 61

Query: 59  DLQKLVD-DVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKK 117
           DL  L+  D    ELERLHS+C++WGFFQV+NHGVSSSLLE+ K E+++FF+LP EEKKK
Sbjct: 62  DLHCLLHGDSMGSELERLHSACKDWGFFQVVNHGVSSSLLEEFKGEVQDFFELPLEEKKK 121

Query: 118 LWQVADNHEGFGQLFVVSEEQKLDW---------------------------ETLESYSA 150
           LWQ  DNHEGFGQLFVVSEEQ+LDW                           ETLE+YS 
Sbjct: 122 LWQQPDNHEGFGQLFVVSEEQRLDWSDMFYLTTLPFNLRKSDIFQKLPQKLRETLEAYSV 181

Query: 151 EMKKLAMTILGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIGFSPHSDADA 210
           EMKKLAMTIL  M KAL+M  EE+RD+FSDGVQSMRMNYYPPCP+PD  IGF+PHSDADA
Sbjct: 182 EMKKLAMTILSQMTKALKMKAEEIRDMFSDGVQSMRMNYYPPCPEPDMTIGFAPHSDADA 241

Query: 211 LTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSK 270
           LTIL QL+DT+GLQIR +GRWVPVKPLPNAFV+NIGDIMEIVSNGIY+SIEHRA+VNS+K
Sbjct: 242 LTILFQLNDTEGLQIRKEGRWVPVKPLPNAFVVNIGDIMEIVSNGIYQSIEHRAMVNSAK 301

Query: 271 ERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 330
           +RLS+ATF+SS +DSELGPAPSLI P NPAIF+R+P+E+YFK+FFARRL+GK+YL FM++
Sbjct: 302 KRLSVATFFSSNLDSELGPAPSLISPQNPAIFQRVPIEKYFKDFFARRLDGKSYLKFMKI 361

Query: 331 D 331
           D
Sbjct: 362 D 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297740613|emb|CBI30795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224106557|ref|XP_002314207.1| predicted protein [Populus trichocarpa] gi|222850615|gb|EEE88162.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557477|ref|XP_002519769.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541186|gb|EEF42742.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483586|ref|XP_003632982.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433644|ref|XP_004134607.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479203|ref|XP_004155534.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255584517|ref|XP_002532986.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223527232|gb|EEF29394.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.557 0.532 0.555 1.9e-91
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.563 0.521 0.466 1.6e-65
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.557 0.525 0.568 1.7e-57
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.498 0.475 0.391 2e-55
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.560 0.523 0.547 2.1e-54
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.557 0.528 0.550 5.5e-54
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.557 0.528 0.537 3e-53
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.545 0.495 0.370 8.7e-53
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.554 0.515 0.356 8.7e-51
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.543 0.524 0.383 6e-50
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 581 (209.6 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
 Identities = 105/189 (55%), Positives = 143/189 (75%)

Query:   143 ETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSDGV-QSMRMNYYPPCPQPDKVIG 201
             +TL++YSAE+K +A  +   +A AL++  EEM  LF D + Q +RMNYYPPCP+PDK IG
Sbjct:   165 DTLDTYSAELKSIAKVLFAKLASALKIKPEEMEKLFDDELGQRIRMNYYPPCPEPDKAIG 224

Query:   202 FSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIE 261
              +PHSDA  LTILLQ+++ +GLQI+  G+WV VKPLPNA V+N+GDI+EI++NG YRSIE
Sbjct:   225 LTPHSDATGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE 284

Query:   262 HRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNG 321
             HR +VNS KERLS+A+F+++    E+GP  SL+     A+F+ +  EEYF   F+R L+G
Sbjct:   285 HRGVVNSEKERLSVASFHNTGFGKEIGPMRSLVERHKGALFKTLTTEEYFHGLFSRELDG 344

Query:   322 KAYLDFMRV 330
             KAYLD MR+
Sbjct:   345 KAYLDVMRI 353
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39224SRG1_ARATHNo assigned EC number0.52580.93760.8826yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-146
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-107
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-87
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 5e-74
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-69
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-65
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-64
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-64
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 8e-62
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-59
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-54
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-50
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-50
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-48
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-46
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-45
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-43
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-42
PLN02485329 PLN02485, PLN02485, oxidoreductase 4e-42
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-40
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-37
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-37
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-34
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-32
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-30
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 6e-28
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-10
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  416 bits (1070), Expect = e-146
 Identities = 188/356 (52%), Positives = 245/356 (68%), Gaps = 31/356 (8%)

Query: 6   EATTVNFGRSIIVPSVQELTNE-TIINVPPRYVRTDQDPPSVTADTWLPS-VPLIDLQKL 63
           EA       SIIVPSVQE+  E  I  VPPRYVR+DQD   +  D+ L S +P+ID+++L
Sbjct: 2   EAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRL 61

Query: 64  VDDVRAD-ELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVA 122
                 D E+E+L  +C+EWGFFQ++NHG+ SS L+K+K EI++FF LP EEKKKLWQ  
Sbjct: 62  CSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRP 121

Query: 123 DNHEGFGQLFVVSEEQKLDW---------------------------ETLESYSAEMKKL 155
              EGFGQ FVVSE+QKLDW                           +TLE+YSAE+K +
Sbjct: 122 GEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSI 181

Query: 156 AMTILGHMAKALRMDGEEMRDLFSDGV-QSMRMNYYPPCPQPDKVIGFSPHSDADALTIL 214
           A  +   MA AL +  EEM  LF D + QS+RMNYYPPCPQPD+VIG +PHSDA  LTIL
Sbjct: 182 AKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTIL 241

Query: 215 LQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLS 274
           LQ+++ +GLQI+  G+WV VKPLPNA V+N+GDI+EI++NG YRSIEHR +VNS KERLS
Sbjct: 242 LQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLS 301

Query: 275 IATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 330
           +ATF+++ +  E+GPA SL+     A+F+ +  +EYF   F+R L+GKAYLD MR+
Sbjct: 302 VATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.8
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.58
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.94
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.66
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 87.67
TIGR02466201 conserved hypothetical protein. This family consis 87.05
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 83.0
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-81  Score=606.17  Aligned_cols=316  Identities=56%  Similarity=0.992  Sum_probs=280.3

Q ss_pred             CCCCcchHHHHhc-CCCCCCCCCCCCCCCCCCCCC-CCCCCCcceEeCCCCCCCCH-HHHHHHHHHHhhhcceEEEEeCC
Q 019703           15 SIIVPSVQELTNE-TIINVPPRYVRTDQDPPSVTA-DTWLPSVPLIDLQKLVDDVR-ADELERLHSSCREWGFFQVINHG   91 (337)
Q Consensus        15 ~~~~~~v~~l~~~-~~~~vp~~y~~~~~~~~~~~~-~~~~~~iPvIDl~~l~~~~~-~~~~~~l~~A~~~~GfF~v~nHG   91 (337)
                      +.+++.|+.|+.+ ++++||++|++|++++|.+.. .....+||||||+.+.+++. .+++++|++||++||||||+|||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG   90 (357)
T PLN02216         11 SIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHG   90 (357)
T ss_pred             CccchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCC
Confidence            3446779999876 889999999999998875321 11124799999999866543 25779999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhhCCCHHHHhhccccCCCcccccccccccccc-------------------cccH--------HH
Q 019703           92 VSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGFGQLFVVSEEQ-------------------KLDW--------ET  144 (337)
Q Consensus        92 v~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~~~~~Gy~~~~~~~~~~-------------------~~~w--------~~  144 (337)
                      ||.++++++++.+++||+||.|+|+++...++..+||+.......+.                   ...|        +.
T Consensus        91 I~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~  170 (357)
T PLN02216         91 IDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDT  170 (357)
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHH
Confidence            99999999999999999999999999977666678886543222111                   1224        88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHhhhcC-ccceeeeeecCCCCCCCCcccccccccCCeeEEEEeCCCCCCe
Q 019703          145 LESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSD-GVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQLDDTQGL  223 (337)
Q Consensus       145 ~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~~-~~~~lr~~~YPp~~~~~~~~g~~~HtD~~~lTlL~q~~~v~GL  223 (337)
                      +.+|+++|.+|+.+||++||++|||++++|.+.+.. ..+.||+||||||++++.++|+++|||+|+||||+|+++++||
T Consensus       171 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GL  250 (357)
T PLN02216        171 LETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL  250 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCce
Confidence            999999999999999999999999999999998876 3578999999999999999999999999999999996579999


Q ss_pred             EEEeCCeEEEecCCCCceEeeccchhhhhhcCcccccccceecCCCCCcceeEeeeecCCCceeecCCCCCCCCCCCCCC
Q 019703          224 QIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSELGPAPSLIGPSNPAIFR  303 (337)
Q Consensus       224 qV~~~g~W~~V~p~~galvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~~~v~~~~p~~y~  303 (337)
                      ||+++|+|++|+|+||++||||||+||+||||+|||++|||++++.++||||+||++|+.|++|+|+++++++++|++|+
T Consensus       251 QV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~  330 (357)
T PLN02216        251 QIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFK  330 (357)
T ss_pred             eEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHhhCCCCcccccccc
Q 019703          304 RMPLEEYFKEFFARRLNGKAYLDFMRV  330 (337)
Q Consensus       304 ~~~~~ey~~~~~~~~~~gk~~l~~~~~  330 (337)
                      +++|+||++.++++.+.++..+|.+||
T Consensus       331 ~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        331 SLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            999999999999999999999998876

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-40
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-40
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 8e-39
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-34
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 6e-13
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-09
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-04
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 45/330 (13%)
Query: 16  IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
           + V  V+ L    II++P  Y+R  ++  S+  D +L       P VP IDL+ +  D  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 67  -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
            +R + +E L  +  +WG   +INHG+ + L+E++K   E FF L  EEK+K    Q   
Sbjct: 61  KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 124 NHEGFGQLFVVSEEQKLDWETL---ESYSAEMKKLAM---------TILGHMAKALRMDG 171
             +G+G     +   +L+WE      +Y  E + L++               AK LR+  
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 172 EEMRDLFSDGVQ------------------SMRMNYYPPCPQPDKVIGFSPHSDADALTI 213
            ++    S G+                    M++NYYP CPQP+  +G   H+D  ALT 
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 214 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 273
           +L  +   GLQ+  +G+WV  K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+
Sbjct: 241 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 274 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 302
           S A F     D   L P P ++   +PA F
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-144
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-136
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-89
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-76
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-76
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 3e-72
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  410 bits (1056), Expect = e-144
 Identities = 103/357 (28%), Positives = 168/357 (47%), Gaps = 47/357 (13%)

Query: 16  IIVPSVQELTNETIINVPPRYVRTDQDPPSVT------ADTWLPSVPLIDLQKLVDD--- 66
           + V  V+ L    II++P  Y+R  ++  S+            P VP IDL+ +  D   
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 67  VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADN 124
           +R + +E L  +  +WG   +INHG+ + L+E++K   E FF L  EEK+K    Q    
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 125 HEGFGQLFVVSEEQKLDW---------------------------ETLESYSAEMKKLAM 157
            +G+G     +   +L+W                           E    Y+  ++ LA 
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 158 TILGHMAKALRMDGEEMRDLF---SDGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTIL 214
            +   ++  L ++ + +        + +  M++NYYP CPQP+  +G   H+D  ALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 215 LQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLS 274
           L  +   GLQ+  +G+WV  K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+S
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 275 IATFYSSRIDS-ELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLDFMRV 330
            A F     D   L P P ++   +PA F        F +    +L GK   + +  
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPR----TFAQHIEHKLFGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.86
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.04
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.52
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 85.97
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 82.8
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 80.79
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-79  Score=593.25  Aligned_cols=307  Identities=31%  Similarity=0.583  Sum_probs=272.1

Q ss_pred             CCcchHHHHhcCCCCCCCCCCCCCCCCCCCCC---CC---CCCCcceEeCCCCCCCCHH---HHHHHHHHHhhhcceEEE
Q 019703           17 IVPSVQELTNETIINVPPRYVRTDQDPPSVTA---DT---WLPSVPLIDLQKLVDDVRA---DELERLHSSCREWGFFQV   87 (337)
Q Consensus        17 ~~~~v~~l~~~~~~~vp~~y~~~~~~~~~~~~---~~---~~~~iPvIDl~~l~~~~~~---~~~~~l~~A~~~~GfF~v   87 (337)
                      ++++||+|+++++.+||++|++|+++++....   ..   ...+||||||+.+.+++..   +.+++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            46789999999999999999999887765321   00   0236999999998665532   366999999999999999


Q ss_pred             EeCCCChHHHHHHHHHHHHhhCCCHHHHhhccccC--CCcccccccccccccc-------------------cccH----
Q 019703           88 INHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVA--DNHEGFGQLFVVSEEQ-------------------KLDW----  142 (337)
Q Consensus        88 ~nHGv~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~--~~~~Gy~~~~~~~~~~-------------------~~~w----  142 (337)
                      +||||+.++++++++.+++||+||.|+|+++....  ..++||+........+                   ...|    
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999999999999999999999999999998754  3678997654322111                   1225    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHhhhc---CccceeeeeecCCCCCCCCcccccccccCCeeEEEE
Q 019703          143 ----ETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS---DGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILL  215 (337)
Q Consensus       143 ----~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lr~~~YPp~~~~~~~~g~~~HtD~~~lTlL~  215 (337)
                          +.+++|+++|.+|+.+||++||++|||++++|.+.+.   ...+.||+||||||++++..+|+++|||+|+||||+
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence                8999999999999999999999999999999999987   467889999999999999999999999999999999


Q ss_pred             eCCCCCCeEEEeCCeEEEecCCCCceEeeccchhhhhhcCcccccccceecCCCCCcceeEeeeecCCCc-eeecCCCCC
Q 019703          216 QLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDS-ELGPAPSLI  294 (337)
Q Consensus       216 q~~~v~GLqV~~~g~W~~V~p~~galvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~Pl~~~v  294 (337)
                      | ++++||||+++|+|++|+|+||++||||||+||+||||+|||++|||+++++++|||++||++|+.|+ +|+|+++++
T Consensus       243 q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~  321 (356)
T 1gp6_A          243 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  321 (356)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             E-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence            9 67999999999999999999999999999999999999999999999999989999999999999999 999999999


Q ss_pred             CCCCCCCCCCccHHHHHHHHHHhhCCCCcc
Q 019703          295 GPSNPAIFRRMPLEEYFKEFFARRLNGKAY  324 (337)
Q Consensus       295 ~~~~p~~y~~~~~~ey~~~~~~~~~~gk~~  324 (337)
                      ++++|++|++++|+||++.+++++++||..
T Consensus       322 ~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          322 SVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            999999999999999999999988887654
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-67
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-59
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-49
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 9e-37
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  212 bits (540), Expect = 4e-67
 Identities = 102/353 (28%), Positives = 165/353 (46%), Gaps = 47/353 (13%)

Query: 16  IIVPSVQELTNETIINVPPRYVRTDQDPPSVT------ADTWLPSVPLIDLQKLVDD--- 66
           + V  V+ L    II++P  Y+R  ++  S+            P VP IDL+ +  D   
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 67  VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVADN 124
           +R + +E L  +  +WG   +INHG+ + L+E++K   E FF L  EEK+K    Q    
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 125 HEGFGQLFVVSEEQKLDW---------------------------ETLESYSAEMKKLAM 157
            +G+G     +   +L+W                           E    Y+  ++ LA 
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180

Query: 158 TILGHMAKALRMDGEEMRDLFSDGVQS---MRMNYYPPCPQPDKVIGFSPHSDADALTIL 214
            +   ++  L ++ + +        +    M++NYYP CPQP+  +G   H+D  ALT  
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-F 239

Query: 215 LQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLS 274
           +  +   GLQ+  +G+WV  K +P++ V++IGD +EI+SNG Y+SI HR LVN  K R+S
Sbjct: 240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299

Query: 275 IATFYSSRIDSE-LGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRLNGKAYLD 326
            A F     D   L P P ++   +PA F        F +    +L GK   +
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT----FAQHIEHKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.64
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.5e-76  Score=566.55  Aligned_cols=299  Identities=32%  Similarity=0.592  Sum_probs=262.4

Q ss_pred             CcchHHHHhcCCCCCCCCCCCCCCCCCCCCC------CCCCCCcceEeCCCCCCCCHH---HHHHHHHHHhhhcceEEEE
Q 019703           18 VPSVQELTNETIINVPPRYVRTDQDPPSVTA------DTWLPSVPLIDLQKLVDDVRA---DELERLHSSCREWGFFQVI   88 (337)
Q Consensus        18 ~~~v~~l~~~~~~~vp~~y~~~~~~~~~~~~------~~~~~~iPvIDl~~l~~~~~~---~~~~~l~~A~~~~GfF~v~   88 (337)
                      +..||+|+++|+++||++|++|++++|.+..      .....+||||||+.+.+++..   +.+++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            5689999999999999999999999886521      123458999999999876653   3569999999999999999


Q ss_pred             eCCCChHHHHHHHHHHHHhhCCCHHHHhhccccC--CCcccccccccccccc-------------------cccH-----
Q 019703           89 NHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVA--DNHEGFGQLFVVSEEQ-------------------KLDW-----  142 (337)
Q Consensus        89 nHGv~~~l~~~~~~~~~~FF~lp~eeK~~~~~~~--~~~~Gy~~~~~~~~~~-------------------~~~w-----  142 (337)
                      ||||+.++++++++++++||+||.|+|++|....  +.+.||+.........                   ...|     
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            9999999999999999999999999999997643  3345554322211111                   1113     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHhhhcC---ccceeeeeecCCCCCCCCcccccccccCCeeEEEEe
Q 019703          143 ---ETLESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFSD---GVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQ  216 (337)
Q Consensus       143 ---~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~~---~~~~lr~~~YPp~~~~~~~~g~~~HtD~~~lTlL~q  216 (337)
                         +.+.+|+++|.+|+.+|+++++++||+++++|.+.+..   ..+.||++|||||+.++..+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence               88999999999999999999999999999999888742   456899999999999999999999999999999999


Q ss_pred             CCCCCCeEEEeCCeEEEecCCCCceEeeccchhhhhhcCcccccccceecCCCCCcceeEeeeecCCCcee-ecCCCCCC
Q 019703          217 LDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERLSIATFYSSRIDSEL-GPAPSLIG  295 (337)
Q Consensus       217 ~~~v~GLqV~~~g~W~~V~p~~galvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~Pl~~~v~  295 (337)
                       ++++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+.+++++||||+||++|+.|++| +|+|++++
T Consensus       243 -~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             -CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             -cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence             7899999999999999999999999999999999999999999999999999999999999999999865 89999999


Q ss_pred             CCCCCCCCCccHHHHHHHHHHh
Q 019703          296 PSNPAIFRRMPLEEYFKEFFAR  317 (337)
Q Consensus       296 ~~~p~~y~~~~~~ey~~~~~~~  317 (337)
                      +++|++|+||||+||++.++..
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHhc
Confidence            9999999999999999987744
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure