Citrus Sinensis ID: 019765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHcccccccccccccHHHHHHHHHHHccccccccccHHHccccccccccccccccccccccHHHHHcccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHEHEEHHHHHccccccccHHccHHccccccccccccccc
Coil and Loop (DISEMBL)
mmyrggvrLFSTLTARTASTEAAARILAGQTNRHLSTFLvrapilgsrnrstlalggekeqqREENVQttgaaaaggsgnkdekRIVSYWgveapkvnkddgsewkwncfrpweayEADLSIdlkkhhapttfsdkMALWTVkslrwptdlffqrRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELdkgnienvpapaiatdywrlppnstlkdVVLVVRAdeahhrdvnhyasdihyqgrqlrespaplgyh
Flexible Loop (DISEMBL)
mmyrggvrLFSTLTARTASTEAAARILagqtnrhlstflvrapilgsrnRSTLAlggekeqqreenvqttgaaaaggsgnkdeKRIVSYWGVeapkvnkddgsewKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAiatdywrlppnSTLKDVVLVVRADeahhrdvnhyasdihyqgrqlrespaplgyh
Low Complexity Region (SEG)
MMYRGGVRLFstltartasteaaarILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTgaaaaggsgNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Disordered region (IsUnstruct)
******VRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILG**************************************RIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY***************
Disordered Region (DISOPRED)
*************************************FLVR****************************************************************KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES*A*****
Disordered Region (DISEMBL)
MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLA***************************DEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Disordered Region (DISPRO)
***RGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRN*********************************EKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG*QL**SPAPL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q39219	354	Ubiquinol oxidase 1a, mit	yes	no	0.979	0.929	0.744	1e-147
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.976	0.929	0.719	1e-140
Q07185	321	Ubiquinol oxidase 1, mito	yes	no	0.845	0.884	0.793	1e-139
O23913	325	Ubiquinol oxidase 1b, mit	no	no	0.886	0.916	0.768	1e-139
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.866	0.979	0.799	1e-138
O22048	329	Ubiquinol oxidase 1c, mit	no	no	0.770	0.787	0.830	1e-133
P22185	349	Ubiquinol oxidase 1, mito	N/A	no	0.857	0.825	0.733	1e-128
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	0.803	0.849	0.703	1e-118
Q8LEE7	318	Ubiquinol oxidase 3, mito	no	no	0.946	1.0	0.589	1e-117
O22049	353	Ubiquinol oxidase 2, mito	no	no	0.833	0.793	0.667	1e-116

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score =  519 bits (1337), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/348 (74%), Positives = 291/348 (83%), Gaps = 19/348 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTE---AAARIL-AGQTNRHLSTFLVRAPILGS-RNRSTLAL 55
           ++   G RLFST+  RT S+    +A+ IL  G T+  + T   RAP +G  R  ST+ L
Sbjct: 14  LLVAAGPRLFSTV--RTVSSHEALSASHILKPGVTSAWIWT---RAPTIGGMRFASTITL 68

Query: 56  GGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWN 108
           G EK   +EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWN
Sbjct: 69  G-EKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWN 126

Query: 109 CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 168
           CFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVA
Sbjct: 127 CFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVA 186

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  V
Sbjct: 187 AVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITV 246

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWR
Sbjct: 247 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWR 306

Query: 289 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           LP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 307 LPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/339 (71%), Positives = 276/339 (81%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLTAR----TASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST   R    T     AA  + G     + + + T++   P++GSR+  ++AL  
Sbjct: 18  GPRYFSTAIFRNDAGTGVMSGAAVFMHGVPANPSEKAVVTWVRHFPVMGSRSAMSMALND 77

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
           ++  ++ EN     AAA GG    DEK +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+
Sbjct: 78  KQHDKKAEN---GSAAATGGGDGGDEKSVVSYWGVQPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADLSIDL KHHAPTTF DK A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIK LL+EAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DY RLP +STL D
Sbjct: 255 VTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYCRLPKDSTLLD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVLVVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 255/291 (87%), Gaps = 7/291 (2%)

Query: 46  GSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEW 105
           G R+ STLAL      ++E+  +  G ++AGG  NK+EK IVSYWG++  K+ K DG+EW
Sbjct: 38  GVRSESTLAL-----SEKEKIEKKVGLSSAGG--NKEEKVIVSYWGIQPSKITKKDGTEW 90

Query: 106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
           KWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK LR+PTD+FFQRRYGCRAMMLE
Sbjct: 91  KWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLE 150

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENERMHLMTFMEVAKPKWYERALV
Sbjct: 151 TVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALV 210

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
             VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTEFLKELDKGNIENVPAPAIA D
Sbjct: 211 ITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 270

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           YW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 271 YWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/302 (76%), Positives = 259/302 (85%), Gaps = 4/302 (1%)

Query: 35  LSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEA 94
           L T  +R P +G   R    +  EK++  EE   + G A     GNK E+ IVSYWGV+ 
Sbjct: 28  LVTENIRVPAMGVV-RVFSKMTFEKKKTTEEKGSSGGKA---DQGNKGEQLIVSYWGVKP 83

Query: 95  PKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ 154
            K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKSLRWPTDLFFQ
Sbjct: 84  MKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQ 143

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           RRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENERMHLMTFMEV
Sbjct: 144 RRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEV 203

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           AKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD GNI
Sbjct: 204 AKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNI 263

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           ENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR+L+E+PAP+G
Sbjct: 264 ENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIG 323

Query: 335 YH 336
           YH
Sbjct: 324 YH 325

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 262/294 (89%), Gaps = 3/294 (1%)

Query: 43  PILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDG 102
           P++G R+ ST+AL    ++Q ++ V+  GAAA+GG    DEK +VSYWGV   KV K+DG
Sbjct: 7   PVMGPRSASTVALN---DKQHDKKVENGGAAASGGGDGGDEKSVVSYWGVPPSKVTKEDG 63

Query: 103 SEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAM 162
           +EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAM
Sbjct: 64  TEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAM 123

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
           MLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYER
Sbjct: 124 MLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYER 183

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 282
           ALVFAVQGVF NAYF+ YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAI
Sbjct: 184 ALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 243

Query: 283 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           A DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+QL++SPAP+GYH
Sbjct: 244 AIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLKDSPAPIGYH 297

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 215/259 (83%), Positives = 238/259 (91%)

Query: 78  SGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
            GNK E+ IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+
Sbjct: 71  QGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKI 130

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           A W VKSLRWPTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKAL
Sbjct: 131 AYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKAL 190

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           LEEAENERMHLMTFMEVAKPKWYERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEE
Sbjct: 191 LEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEE 250

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           AIHSYTEFLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYAS
Sbjct: 251 AIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYAS 310

Query: 318 DIHYQGRQLRESPAPLGYH 336
           DIHYQG +L+E+PAP+GYH
Sbjct: 311 DIHYQGHELKEAPAPIGYH 329

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P22185|AOX1_TYPVN Ubiquinol oxidase 1, mitochondrial OS=Typhonium venosum GN=AOX1 PE=1 SV=1

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/289 (73%), Positives = 245/289 (84%), Gaps = 1/289 (0%)

Query: 48  RNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKW 107
           R+ STL+    ++  +E+   T G    G  G  +++ +VSYW V   KV+K+DGSEW+W
Sbjct: 62  RHASTLS-APAQDGGKEKAAGTAGKVPPGEDGGAEKEAVVSYWAVPPSKVSKEDGSEWRW 120

Query: 108 NCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETV 167
            CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+LRWPTD+FFQRRY CRAMMLETV
Sbjct: 121 TCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETV 180

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV A
Sbjct: 181 AAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLA 240

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLK++D G I++ PAPAIA DYW
Sbjct: 241 VQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDCPAPAIALDYW 300

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +L+ +PAPLGYH
Sbjct: 301 RLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. In S.guttatum the alternative respiratory pathway is thermogenic.

Typhonium venosum (taxid: 4463)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 192/273 (70%), Positives = 228/273 (83%), Gaps = 3/273 (1%)

Query: 67  VQTTGAAAAGGSGNKDEKR---IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSID 123
           +   G A A     K+EK+   + +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSID
Sbjct: 46  LSNAGGAEAQVKEQKEEKKDAMVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSID 105

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           LKKHH P TF DK A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS
Sbjct: 106 LKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 165

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LR+ E SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++S
Sbjct: 166 LRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLS 225

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           PK AHR+VGYLEEEAIHSYTE+LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVR
Sbjct: 226 PKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVR 285

Query: 304 ADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           ADEAHHRDVNH+ASD+  QG++LR++PAP+GYH
Sbjct: 286 ADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/336 (58%), Positives = 250/336 (74%), Gaps = 18/336 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           M YR    ++ TL    +S+  ++ +  G    HL + L    +L S   S ++      
Sbjct: 1   MSYRS---IYRTLRPVLSSSVQSSGLGIGGFRGHLISHLPNVRLLSSDTSSPVS----GN 53

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E  ++T            D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+
Sbjct: 54  NQPENPIRTA-----------DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDV 102

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID+ KHH P+ F+DK A WTV++L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH
Sbjct: 103 SIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLH 162

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            KSLRRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y
Sbjct: 163 LKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAY 222

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR+ GYLEEEA++SYTEFLK++D G  EN PAPAIA DYWRLP ++TL+DVV 
Sbjct: 223 VISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVY 282

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V+RADEAHHRD+NHYASDI ++G +L+E+PAP+GYH
Sbjct: 283 VIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22049|AOX2_ARATH Ubiquinol oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/295 (66%), Positives = 230/295 (77%), Gaps = 15/295 (5%)

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIV-------------SYWGVEAPK--VNKDD 101
           G K  Q   N++  G ++A     KDE   V             SYWG+E  K  + + D
Sbjct: 59  GSKHVQGNFNLRWMGMSSASAMEKKDENLTVKKGQNGGGSVAVPSYWGIETAKMKITRKD 118

Query: 102 GSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRA 161
           GS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK LR PTD+FFQRRYGCRA
Sbjct: 119 GSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRA 178

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           MMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAENERMHLMT ME+ KPKWYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYE 238

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 281
           R LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYTEFLK++D G IENV APA
Sbjct: 239 RLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPA 298

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           IA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG++LRE+ AP+GYH
Sbjct: 299 IAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
190710541	336	mitochondrial alternative oxidase precur	1.0	1.0	0.997	0.0
297830954	354	hypothetical protein ARALYDRAFT_479749 [	0.988	0.937	0.733	1e-145
15228734	354	alternative oxidase 1A [Arabidopsis thal	0.979	0.929	0.744	1e-145
224118194	336	predicted protein [Populus trichocarpa]	0.973	0.973	0.748	1e-145
116488305	331	alternative oxidase [Gossypium hirsutum]	0.958	0.972	0.741	1e-144
155573899	353	mitochondrial alternative oxidase AOX1a	0.976	0.929	0.734	1e-144
312282139	357	unnamed protein product [Thellungiella h	0.994	0.935	0.739	1e-144
6634501	351	alternative oxidase [Populus tremula x P	0.967	0.925	0.734	1e-143
4006943	353	alternative oxidase [Arabidopsis thalian	0.982	0.934	0.738	1e-142
166876	305	oxidase [Arabidopsis thaliana]	0.877	0.967	0.8	1e-142

>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/336 (99%), Positives = 336/336 (100%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE
Sbjct: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL
Sbjct: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH
Sbjct: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
           CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY
Sbjct: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL
Sbjct: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVRADEAHHRDVNH+ASDIHYQGRQLRESPAPLGYH
Sbjct: 301 VVRADEAHHRDVNHFASDIHYQGRQLRESPAPLGYH 336

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp. lyrata] gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp. lyrata]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/357 (73%), Positives = 287/357 (80%), Gaps = 25/357 (7%)

Query: 1   MMYRGGV------------RLFSTLTARTASTEAAARILAGQTNRHLSTFL-VRAPILGS 47
           MM RGG             RLFST+  RT S+  A            ST++  RAP +G 
Sbjct: 2   MMTRGGAKAAKSLLTAAKPRLFSTI--RTISSHEALSASHLLKPDVASTWIWTRAPTIGG 59

Query: 48  -RNRSTLALGGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNK 99
            R  ST+ LG EK   +EE+        ++TG  AAGG+ NK EK I SYWGVE  K+ K
Sbjct: 60  MRFASTITLG-EKTPTKEEDANQKKTEKESTGGDAAGGN-NKGEKGIASYWGVEPNKITK 117

Query: 100 DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC 159
           +DGSEWKWNCFRPWE Y ADL+IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGC
Sbjct: 118 EDGSEWKWNCFRPWETYNADLTIDLKKHHVPTTFLDRLAYWTVKSLRWPTDLFFQRRYGC 177

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           RAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKW
Sbjct: 178 RAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKW 237

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 279
           YERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA
Sbjct: 238 YERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 297

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           PAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 298 PAIAIDYWRLPADATLRDVVIVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana] gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName: Full=Alternative oxidase 1a; Flags: Precursor gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana] gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana] gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana] gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana] gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/348 (74%), Positives = 291/348 (83%), Gaps = 19/348 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTE---AAARIL-AGQTNRHLSTFLVRAPILGS-RNRSTLAL 55
           ++   G RLFST+  RT S+    +A+ IL  G T+  + T   RAP +G  R  ST+ L
Sbjct: 14  LLVAAGPRLFSTV--RTVSSHEALSASHILKPGVTSAWIWT---RAPTIGGMRFASTITL 68

Query: 56  GGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWN 108
           G EK   +EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWN
Sbjct: 69  G-EKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWN 126

Query: 109 CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 168
           CFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVA
Sbjct: 127 CFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVA 186

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  V
Sbjct: 187 AVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITV 246

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWR
Sbjct: 247 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWR 306

Query: 289 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           LP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 307 LPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa] gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 275/334 (82%), Gaps = 7/334 (2%)

Query: 8   RLFSTLTARTASTEAAARILAGQTN-----RHLSTFLVRAPILGSRNRSTLALGGEKEQQ 62
           R FST TAR    + A    A   N     R++  F VR  + G R+ ST +  G+ +QQ
Sbjct: 5   RSFSTATARGIVAKEAVPAKAVGFNGDVVRRNIGEFWVRGSVFGLRHGSTASYSGKDQQQ 64

Query: 63  REENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSI 122
             E V+ +   A GG   +++  IVSYWGV   +V K+DG+EWKWNCFRPWE Y ADLSI
Sbjct: 65  --EEVKHSQPVAEGGDKAEEKNAIVSYWGVPPSRVTKEDGTEWKWNCFRPWETYSADLSI 122

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           +L KHHAP TF DKMA WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK
Sbjct: 123 NLTKHHAPVTFLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRRFEHSGGWIKALLEEAENERMHLMTFMEVA P+WYERALV  VQGVFFNAYFLGYLI
Sbjct: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVANPRWYERALVITVQGVFFNAYFLGYLI 242

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV VV
Sbjct: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVEVV 302

Query: 303 RADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 303 RADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116488305|gb|ABJ98721.1| alternative oxidase [Gossypium hirsutum]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/344 (74%), Positives = 282/344 (81%), Gaps = 22/344 (6%)

Query: 1   MMYRGGVRL----FSTLTARTASTEAAARILAGQTNRHLSTFLVRAPI--LGSRNRSTLA 54
           MM RG  RL    F+ ++ R  ST A        T   LS  +V+AP   LG R RS++A
Sbjct: 2   MMSRGYTRLASSMFTMVSPRFFSTAA--------TRGVLSNDMVKAPAVGLGVRCRSSMA 53

Query: 55  L--GGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRP 112
              GG+KEQ++++      A   GG   KD+K IVSYWG++  KV+K+DGS WKW CFRP
Sbjct: 54  AIGGGDKEQEKKQ------AVGGGGGSAKDDKEIVSYWGLDPTKVSKEDGSPWKWTCFRP 107

Query: 113 WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 172
           W+ Y ADLSIDLKKHHAP T  DKMA WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG
Sbjct: 108 WDTYRADLSIDLKKHHAPVTVLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 167

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+ P+WYERALVF+VQGVF
Sbjct: 168 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSDPRWYERALVFSVQGVF 227

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 292
           FNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEFLKELD GNIENVPAP IA DYWRL PN
Sbjct: 228 FNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPPIAIDYWRLSPN 287

Query: 293 STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           STL+DVVL VRADEAHHRDVNH+ASDIHYQGRQL+E+PAPLGYH
Sbjct: 288 STLRDVVLAVRADEAHHRDVNHFASDIHYQGRQLKEAPAPLGYH 331

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa] gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/339 (73%), Positives = 280/339 (82%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLT----ARTASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST      ART     AA  + G     + + + T+     ++GSR+ ST+AL G
Sbjct: 18  GPRYFSTAILRNDARTGVMTGAAGFMHGVPANPSEKAVVTWFRHFAVMGSRSASTMALNG 77

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
              +Q ++ V+T  AAA+ G    DEK +VSYWGV   KV K+DG+EWKWNCFRPWE Y+
Sbjct: 78  ---KQHDKKVETGAAAASVGGDGGDEKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADLSIDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP +STL+D
Sbjct: 255 VTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVLVVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353

Source: Nicotiana glutinosa

Species: Nicotiana glutinosa

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282139|dbj|BAJ33935.1| unnamed protein product [Thellungiella halophila]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/346 (73%), Positives = 285/346 (82%), Gaps = 12/346 (3%)

Query: 1   MMYRGGVRLFSTLTA--RTASTEA--AARILAGQTNRHLST---FLVRAPILGS-RNRST 52
           +M   G RLFST TA    +S EA  A+R+L    +  +S       RAP  G  R  ST
Sbjct: 14  LMKAAGPRLFSTGTAIRPVSSLEALSASRLLKPPVDSGVSGSAWIWSRAPGFGGVRFAST 73

Query: 53  LALGGEKEQQREENVQTTGAAAAGGS--GNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           + LG  ++Q+ E N + T   + GG   GNK EK I SYWGVE  K+ K+DG+EWKWNCF
Sbjct: 74  VTLG--EKQETEANPKKTENESVGGDAGGNKGEKGIDSYWGVEPNKITKEDGTEWKWNCF 131

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAV 170
           RPWE Y+ADL+IDL KHH PTTF D++A WTVKSLRWPTD+FFQRRYGCRAMMLETVAAV
Sbjct: 132 RPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAV 191

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQG
Sbjct: 192 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 251

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP 290
           VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP
Sbjct: 252 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLP 311

Query: 291 PNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 312 ADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 357

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/335 (73%), Positives = 276/335 (82%), Gaps = 10/335 (2%)

Query: 8   RLFST-----LTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQ 62
           R FST     + A+ A T  A         +++  F VR  + G R+ ST++ G EK+QQ
Sbjct: 21  RSFSTAISRGIIAKEAVTAKAVECHGDVVRKNIGEFWVRGSVFGVRHGSTMSFG-EKDQQ 79

Query: 63  REENVQTTGAAAAGGSGNKDEKR-IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
           + E  QT   A  G   +K+EK+ I SYWGV   +V K+DG+EWKWNCFRPWE Y ADLS
Sbjct: 80  KVEMKQTQSVAEGG---DKEEKKEIASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLS 136

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDLKKHH P TF DKMA W VK+LR+PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC
Sbjct: 137 IDLKKHHVPATFLDKMAYWMVKALRFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 196

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           KSLRRFEHSGGWIK LL+EAENERMHLMTFMEVAKP+WYERALV  VQGVF NAYFLGY+
Sbjct: 197 KSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYI 256

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLPP++TL+DVVLV
Sbjct: 257 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAVDYWRLPPDATLRDVVLV 316

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 317 VRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 351

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 279/340 (82%), Gaps = 10/340 (2%)

Query: 5   GGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGS-RNRSTLALGGEKEQQR 63
           GG   F       +S EA +R    +     +    RAP +G  R  ST+ LG EK   +
Sbjct: 16  GGWTTFVLDGPYVSSHEALSRSHILKPGVTSAWIWTRAPTIGGMRFASTITLG-EKTPMK 74

Query: 64  EENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAY 116
           EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWNCFRPWE Y
Sbjct: 75  EEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWNCFRPWETY 133

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           +AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 134 KADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 193

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           MLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQGVFFNAY
Sbjct: 194 MLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAY 253

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP ++TL+
Sbjct: 254 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLR 313

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 314 DVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/305 (80%), Positives = 268/305 (87%), Gaps = 10/305 (3%)

Query: 40  VRAPILGS-RNRSTLALGGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWG 91
            RAP +G  R  ST+ LG EK   +EE+        ++TG  AAGG+ NK +K I SYWG
Sbjct: 3   TRAPTIGGMRFASTITLG-EKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWG 60

Query: 92  VEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL 151
           VE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDL
Sbjct: 61  VEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDL 120

Query: 152 FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTF 211
           FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTF
Sbjct: 121 FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTF 180

Query: 212 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
           MEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK
Sbjct: 181 MEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 240

Query: 272 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 331
           GNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PA
Sbjct: 241 GNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPA 300

Query: 332 PLGYH 336
           P+GYH
Sbjct: 301 PIGYH 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.988	0.937	0.721	3.9e-131
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	0.883	0.913	0.759	9.9e-126
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	0.845	0.884	0.793	1.3e-125
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	0.875	0.893	0.750	1.7e-123
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.741	0.721	0.791	2.2e-112
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	0.758	0.801	0.713	9.2e-107
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.747	0.711	0.739	8.3e-106
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.461	0.437	0.578	6.8e-51
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.479	0.427	0.502	1.4e-46
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.553	0.551	0.486	1.8e-46

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 249/345 (72%), Positives = 274/345 (79%)

Query:     1 MMYRGGVRLFXXXXXXXXXXXXXXX-ILA-GQTNRHLSTFLVRAPILGS-RNRSTLALGG 57
             ++   G RLF                IL  G T+  + T   RAP +G  R  ST+ LG 
Sbjct:    14 LLVAAGPRLFSTVRTVSSHEALSASHILKPGVTSAWIWT---RAPTIGGMRFASTITLG- 69

Query:    58 EKEQQREE--NVQTTXXXXXXXXX----NKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFR 111
             EK   +EE  N + T             NK +K I SYWGVE  K+ K+DGSEWKWNCFR
Sbjct:    70 EKTPMKEEDANQKKTENESTGGDAAGGNNKGDKGIASYWGVEPNKITKEDGSEWKWNCFR 129

Query:   112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
             PWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP
Sbjct:   130 PWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 189

Query:   172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
             GMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQGV
Sbjct:   190 GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 249

Query:   232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 291
             FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP 
Sbjct:   250 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPA 309

Query:   292 NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
             ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct:   310 DATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 230/303 (75%), Positives = 257/303 (84%)

Query:    35 LSTFLVRAPILGS-RNRSTLALGGEKEQQREENVQTTXXXXXXXXXNKDEKRIVSYWGVE 93
             L T  +R P +G  R  S +    EK++  EE   +          NK E+ IVSYWGV+
Sbjct:    28 LVTENIRVPAMGVVRVFSKMTF--EKKKTTEEKGSS---GGKADQGNKGEQLIVSYWGVK 82

Query:    94 APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF 153
               K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKSLRWPTDLFF
Sbjct:    83 PMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFF 142

Query:   154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
             QRRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENERMHLMTFME
Sbjct:   143 QRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 202

Query:   214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
             VAKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD GN
Sbjct:   203 VAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGN 262

Query:   274 IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
             IENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR+L+E+PAP+
Sbjct:   263 IENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPI 322

Query:   334 GYH 336
             GYH
Sbjct:   323 GYH 325

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 231/291 (79%), Positives = 252/291 (86%)

Query:    46 GSRNRSTLALGGEKEQQREENVQTTXXXXXXXXXNKDEKRIVSYWGVEAPKVNKDDGSEW 105
             G R+ STLAL  EKE+  E+ V  +         NK+EK IVSYWG++  K+ K DG+EW
Sbjct:    38 GVRSESTLALS-EKEKI-EKKVGLSSAGG-----NKEEKVIVSYWGIQPSKITKKDGTEW 90

Query:   106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
             KWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK LR+PTD+FFQRRYGCRAMMLE
Sbjct:    91 KWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLE 150

Query:   166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
             TVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENERMHLMTFMEVAKPKWYERALV
Sbjct:   151 TVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALV 210

Query:   226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
               VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTEFLKELDKGNIENVPAPAIA D
Sbjct:   211 ITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 270

Query:   286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
             YW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct:   271 YWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 223/297 (75%), Positives = 252/297 (84%)

Query:    41 RAPILGS-RNRSTLALGGEKEQQREENVQTTXXXXXXXXXNKDEKRIVSYWGVEAPKVNK 99
             R P +G  R+ S +    EK++  EE   +          NK E+ IVSYWGV+  K+ K
Sbjct:    35 RVPAVGGLRDFSKMTF--EKKKTSEEEEGSGDGVKVNDQGNKGEQLIVSYWGVKPMKITK 92

Query:   100 DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC 159
             +DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKSLRWPTDLFFQRRYGC
Sbjct:    93 EDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWMVKSLRWPTDLFFQRRYGC 152

Query:   160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
             RA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKW
Sbjct:   153 RAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKW 212

Query:   220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 279
             YERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEEAIHSYTEFLKELD GNIENVPA
Sbjct:   213 YERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPA 272

Query:   280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
             PAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG +L+E+PAP+GYH
Sbjct:   273 PAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHELKEAPAPIGYH 329

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 197/249 (79%), Positives = 220/249 (88%)

Query:    88 SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
             SYWG+EA K+   DG EWKW+CFRPWE Y  D +IDLKKHH P    DK+A WTVK+LR 
Sbjct:    97 SYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156

Query:   148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
             PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct:   157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216

Query:   208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
             LMTFMEVAKP+WYERALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct:   217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276

Query:   268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
             +++ G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L+
Sbjct:   277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLK 336

Query:   328 ESPAPLGYH 336
             + PAPL YH
Sbjct:   337 DIPAPLDYH 345

GO:0005739 "mitochondrion" evidence=IC

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 182/255 (71%), Positives = 221/255 (86%)

Query:    82 DEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWT 141
             D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WT
Sbjct:    64 DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWT 123

Query:   142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
             V++L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEA
Sbjct:   124 VQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEA 183

Query:   202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
             ENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++S
Sbjct:   184 ENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNS 243

Query:   262 YTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
             YTEFLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI +
Sbjct:   244 YTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQF 303

Query:   322 QGRQLRESPAPLGYH 336
             +G +L+E+PAP+GYH
Sbjct:   304 KGHELKEAPAPIGYH 318

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 187/253 (73%), Positives = 217/253 (85%)

Query:    86 IVSYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 143
             + SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK
Sbjct:   101 VPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVK 160

Query:   144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
              LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAEN
Sbjct:   161 LLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAEN 220

Query:   204 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             ERMHLMT ME+ KPKWYER LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYT
Sbjct:   221 ERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYT 280

Query:   264 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
             EFLK++D G IENV APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG
Sbjct:   281 EFLKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQG 340

Query:   324 RQLRESPAPLGYH 336
             ++LRE+ AP+GYH
Sbjct:   341 KELREAAAPIGYH 353

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 494 (179.0 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 92/159 (57%), Positives = 119/159 (74%)

Query:   160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
             R + LE+VA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W
Sbjct:   152 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGW 211

Query:   220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 276
             + R +V   QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E 
Sbjct:   212 FMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEK 271

Query:   277 VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
             + AP IA  YW++P  N T+KD++L VRADEA HR+VNH
Sbjct:   272 LEAPEIAVKYWKMPEGNRTMKDLLLYVRADEAKHREVNH 310

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 457 (165.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
 Identities = 84/167 (50%), Positives = 118/167 (70%)

Query:   160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
             R + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W
Sbjct:   151 RFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 210

Query:   220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN--- 276
               + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++     
Sbjct:   211 LMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSD 270

Query:   277 --VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
                  P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct:   271 PKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 317

GO:0043581 "mycelium development" evidence=IEP

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 91/187 (48%), Positives = 133/187 (71%)

Query:   132 TFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG 191
             + SD  A ++V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LH K+LR  + S 
Sbjct:   102 SLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SN 160

Query:   192 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 251
              WIK L++E ENERMHL++FME+ KP   ER +V   Q +++N + + Y++SPK AHR  
Sbjct:   161 NWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFT 220

Query:   252 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 311
             GYLEE+A+ +YT  L+++D G + N  AP IA +YW LP ++TL+D++LV+R DE+ HR 
Sbjct:   221 GYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRL 280

Query:   312 VNHYASD 318
             VNH  S+
Sbjct:   281 VNHEISN 287

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41224	AOX1_TOBAC	1, ., -, ., -, ., -	0.7197	0.9761	0.9291	N/A	no
O23913	AOX1B_ARATH	1, ., -, ., -, ., -	0.7682	0.8869	0.9169	no	no
Q07185	AOX1_SOYBN	1, ., -, ., -, ., -	0.7938	0.8452	0.8847	yes	no
P22185	AOX1_TYPVN	1, ., -, ., -, ., -	0.7335	0.8571	0.8252	N/A	no
Q39219	AOX1A_ARATH	1, ., -, ., -, ., -	0.7442	0.9791	0.9293	yes	no
Q40578	AOX2_TOBAC	1, ., -, ., -, ., -	0.7993	0.8660	0.9797	N/A	no
Q9P414	AOX_PICST	1, ., -, ., -, ., -	0.3354	0.8601	0.8095	yes	no
Q40294	AOX1_MANIN	1, ., -, ., -, ., -	0.7032	0.8035	0.8490	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__2450__AT3G22370.1 annotation not avaliable (354 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
PLN02478	328	PLN02478, PLN02478, alternative oxidase	0.0
pfam01786	214	pfam01786, AOX, Alternative oxidase	1e-121
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	6e-98

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score =  560 bits (1444), Expect = 0.0
 Identities = 229/334 (68%), Positives = 259/334 (77%), Gaps = 7/334 (2%)

Query: 4   RGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRN-RSTLALGGEKEQQ 62
               RL S+ ++ +     +    A                +GS++ +    L  E+E  
Sbjct: 1   GLCNRLVSSASSASHM--KSPLFPAAPMRIGDRAPRFGGFRIGSKHAQEEKKLAEEEESS 58

Query: 63  REENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSI 122
            +     T     G +    +K IVSYWG+E  K+ K+DG+EWKWNCFRPWE Y+ADLSI
Sbjct: 59  GKA----TENKDEGSTVKGGQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSI 114

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           DLKKHH P T  DK+A WTVKSLR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH K
Sbjct: 115 DLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLK 174

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLI
Sbjct: 175 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLI 234

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SPKFAHR+VGYLEEEAIHSYTEFLK+LD G IENVPAPAIA DYWRLP ++TL+DVV VV
Sbjct: 235 SPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVV 294

Query: 303 RADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RADEAHHRDVNH+ASDIHYQG++L+E+PAP+GYH
Sbjct: 295 RADEAHHRDVNHFASDIHYQGKELKEAPAPIGYH 328

Length = 328

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  346 bits (890), Expect = e-121
 Identities = 125/214 (58%), Positives = 155/214 (72%), Gaps = 9/214 (4%)

Query: 114 EAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDL-------FFQRRYGCRAMMLE 165
             Y  D   ++K  H  P T  DK+A + VK LRW  DL         + R+  RA+ LE
Sbjct: 1   PIYTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLE 60

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVA VPGMVGGML H +SLRR +  GGWI+ LLEEAENERMHL+TF+E+ KP W+ER LV
Sbjct: 61  TVAGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLELGKPGWFERFLV 120

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
              QGVFFNA+FL YL+SP+ AHR VGYLEEEA+ +YT FLK+++ G + NVPAP IA D
Sbjct: 121 LLAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAID 180

Query: 286 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASD 318
           YWRLP  ++TL+DV+LV+RADEAHHRDVNH  ++
Sbjct: 181 YWRLPELDATLRDVILVIRADEAHHRDVNHTLAN 214

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  286 bits (734), Expect = 6e-98
 Identities = 97/168 (57%), Positives = 122/168 (72%)

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
           ++ R+  R + LETVA VPGMV GMLLH  SLR     GGWIK LLEEAENERMHL+ F 
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           E+  P W+ R  V   Q VF+NAYFL YLISP+ AHR VGYLEEEA+ +YTEFLK++++G
Sbjct: 61  ELGGPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEG 120

Query: 273 NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
              ++PAP IA +Y+RL  ++TL DV + +RADEA HR VNH  +D+ 
Sbjct: 121 LKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVNHACADLG 168

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	97.52
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	97.51
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	95.83
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	95.78
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	95.19
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	93.11
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	92.9
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	92.26
PRK13456	186	DNA protection protein DPS; Provisional	82.69

>PLN02478 alternative oxidase

Probab=100.00  E-value=7.9e-119  Score=852.67  Aligned_cols=255  Identities=85%  Similarity=1.448  Sum_probs=253.0

Q ss_pred             CCceeeeeeccCCCCCCCCCCCCcccccCccccccccccccccccCCCCCCCChHHHHHHHHHhhcccccccccccccee
Q 019765           82 DEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRA  161 (336)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~w~w~~f~p~~~y~~~~~~~~~~H~~P~~~~D~~A~~~Vk~LR~~~D~~f~~R~~~R~  161 (336)
                      .++.++||||++|+|+++|||++|+|+||+||++|.+|..+++++|++|++|+||+|+++||+|||++|+||++||++||
T Consensus        74 ~~~~~~~ywg~~~~~~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R~  153 (328)
T PLN02478         74 GQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRA  153 (328)
T ss_pred             CCeeeeeecccCCcccccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 019765          162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL  241 (336)
Q Consensus       162 i~LETVA~VPGmV~gml~HLrSLR~~~rd~GwI~tLLeEAENERmHLLtfmel~kP~~~eR~lv~~aQgvffn~yf~~Yl  241 (336)
                      +||||||+|||||+||++||+|||+|+||+||||+||||||||||||||||++++|+|++|++|+++|++|||+||++||
T Consensus       154 ifLETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~YL  233 (328)
T PLN02478        154 MMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYL  233 (328)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhhhccccccc
Q 019765          242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY  321 (336)
Q Consensus       242 iSPr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvNH~~ad~~~  321 (336)
                      +|||+|||||||||||||+|||+||+|||+|+|+|+|||+|||+||+||+++||||||++||+||++||||||++||+++
T Consensus       234 iSPr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~~  313 (328)
T PLN02478        234 ISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHY  313 (328)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCC
Q 019765          322 QGRQLRESPAPLGYH  336 (336)
Q Consensus       322 q~~~~~~~p~~~~~~  336 (336)
                      ||++++++|+|+|||
T Consensus       314 ~~~~~~~~~~~~~~~  328 (328)
T PLN02478        314 QGKELKEAPAPIGYH  328 (328)
T ss_pred             cccccCCCCCCCCCC
Confidence            999999999999999

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=1.4e-88  Score=618.34  Aligned_cols=195  Identities=61%  Similarity=1.068  Sum_probs=193.1

Q ss_pred             cccCCCCCCCChHHHHHHHHHhhccccccccccccceeeeeeecccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHh
Q 019765          124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN  203 (336)
Q Consensus       124 ~~~H~~P~~~~D~~A~~~Vk~LR~~~D~~f~~R~~~R~i~LETVA~VPGmV~gml~HLrSLR~~~rd~GwI~tLLeEAEN  203 (336)
                      ..+|++|++++|++|+++||+|||++|++|++||++|++|||||||||||||+|++||+|||+|+||+||||+|||||||
T Consensus        12 ~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~I~~lleEaeN   91 (207)
T PF01786_consen   12 QVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGWIKTLLEEAEN   91 (207)
T ss_pred             ccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 019765          204 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA  283 (336)
Q Consensus       204 ERmHLLtfmel~kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IA  283 (336)
                      ||||||||++++||+|++|++++++|++|||+|+++|++|||+|||||||||||||+|||+||+|||+|+|+|+|||+||
T Consensus        92 ErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l~~~paP~iA  171 (207)
T PF01786_consen   92 ERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKLPNMPAPEIA  171 (207)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCC-CCChHHHHHHHhhhhhhhHhhhhcccc
Q 019765          284 TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASD  318 (336)
Q Consensus       284 i~YW~Lp~-datLrDvil~IRaDEa~HRdvNH~~ad  318 (336)
                      ++||+||+ ++||||||++||+||++||+|||++||
T Consensus       172 i~Yw~l~~~~atlrDvi~~IRaDEa~Hr~vNH~~a~  207 (207)
T PF01786_consen  172 IDYWGLPELDATLRDVILAIRADEAEHRDVNHTLAD  207 (207)
T ss_pred             HHHhCCCccCchHHHHHHHHHhhHHHHHHhhhhhcC
Confidence            99999999 999999999999999999999999997

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=5.7e-82  Score=560.06  Aligned_cols=168  Identities=58%  Similarity=0.971  Sum_probs=165.7

Q ss_pred             ccccccceeeeeeecccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 019765          153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF  232 (336)
Q Consensus       153 f~~R~~~R~i~LETVA~VPGmV~gml~HLrSLR~~~rd~GwI~tLLeEAENERmHLLtfmel~kP~~~eR~lv~~aQgvf  232 (336)
                      |++||++||+||||||||||||++|++||+|||+|+||+||||+|||||||||||||||+++++|+|++|.+++.+|++|
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf   80 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF   80 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhh
Q 019765          233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  312 (336)
Q Consensus       233 fn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdv  312 (336)
                      ||+||++|++|||+|||||||||||||+|||+||++||+|+++|+|||+||++||+||+++||||||++||+||++||+|
T Consensus        81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~v  160 (168)
T cd01053          81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKV  160 (168)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccc
Q 019765          313 NHYASDIH  320 (336)
Q Consensus       313 NH~~ad~~  320 (336)
                      ||+++|+.
T Consensus       161 nh~~~~~~  168 (168)
T cd01053         161 NHACADLG  168 (168)
T ss_pred             HHHhhcCC
Confidence            99999863

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=97.52  E-value=0.0012  Score=59.50  Aligned_cols=101  Identities=25%  Similarity=0.325  Sum_probs=75.9

Q ss_pred             chHHHHHHHH-HhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHH
Q 019765          192 GWIKALLEEA-ENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF  265 (336)
Q Consensus       192 GwI~tLLeEA-ENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~~  265 (336)
                      .-++..++|+ +.|.-||-.|-+..     +|+++-=+.    .+.=|.+-++.=++.++.++-++.-+|+....-|.+-
T Consensus        29 ~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW----~~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~q  104 (165)
T cd01042          29 PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW----YVAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQ  104 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666554 88999999988864     666543222    1222334445666799999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhhh
Q 019765          266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH  314 (336)
Q Consensus       266 L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvNH  314 (336)
                      |++++.-                  .|..+++.|..+|+||.+|+|.--
T Consensus       105 l~~L~~~------------------~d~~l~~~l~~~r~DE~~H~d~A~  135 (165)
T cd01042         105 LRELPAQ------------------PDKELRAIIEQFRDDELEHADIAE  135 (165)
T ss_pred             HHHhhcc------------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998321                  368999999999999999998744

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=97.51  E-value=0.0012  Score=59.74  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=76.7

Q ss_pred             HHHHHHHH-HhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHH
Q 019765          194 IKALLEEA-ENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK  267 (336)
Q Consensus       194 I~tLLeEA-ENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~~L~  267 (336)
                      ++..+.|+ +.|.-||-.|-++.     .|+++.=+.    .+.-|.+-++.=++.++.++-++.-+|+....-|.+-|+
T Consensus        34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw----~~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~  109 (172)
T PF03232_consen   34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLW----YVAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLR  109 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHH----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555 68999999998875     476643322    223344445566899999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhh
Q 019765          268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN  313 (336)
Q Consensus       268 did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvN  313 (336)
                      ++....               .++|..|+++|..+|+||.+|+|.-
T Consensus       110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE~~H~d~A  140 (172)
T PF03232_consen  110 ELPAMG---------------EEEDPELRAIIEQFRDDELEHRDTA  140 (172)
T ss_pred             HHHhcc---------------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            994221               1346679999999999999999864

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=95.83  E-value=0.016  Score=49.62  Aligned_cols=126  Identities=15%  Similarity=0.132  Sum_probs=87.8

Q ss_pred             eeeecccCChhHHHHHHHhhhhhcccc-CcchHHHHHHHHHhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHH
Q 019765          163 MLETVAAVPGMVGGMLLHCKSLRRFEH-SGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAY  236 (336)
Q Consensus       163 ~LETVA~VPGmV~gml~HLrSLR~~~r-d~GwI~tLLeEAENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~y  236 (336)
                      ++|-++|.-|=..++...++.-...+. +..--+.+...|.-|.-|..++.++.     +|.+...+..   .+.+|..-
T Consensus        18 ~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~~   94 (154)
T cd07908          18 LLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTGK   94 (154)
T ss_pred             HHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCcc
Confidence            456667777767777778877655553 22344577889999999999988872     5654332111   11111111


Q ss_pred             HHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhh
Q 019765          237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  312 (336)
Q Consensus       237 f~~YliSPr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdv  312 (336)
                      .+....++.-+.++.--+|+.|+..|.+.++.+                     +|...++++..|.+||..|.+.
T Consensus        95 ~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE~~H~~~  149 (154)
T cd07908          95 YVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDEKLHIKI  149 (154)
T ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence            122334667799999999999999999999875                     3678999999999999999864

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=95.78  E-value=0.098  Score=48.99  Aligned_cols=99  Identities=23%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             HHHHHHH-HHhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHH
Q 019765          194 IKALLEE-AENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK  267 (336)
Q Consensus       194 I~tLLeE-AENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~~L~  267 (336)
                      .|.+|.| ++.|-.||-+|.+..     .|+++-=+--    ..-|.+-.+.=|+++|+++-|++-+|+.--.-|.+-|+
T Consensus        72 ~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~----~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~  147 (204)
T COG2941          72 PRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWY----AAAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLR  147 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH----HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555 467788998887753     5665332211    11133334577999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhhhc
Q 019765          268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY  315 (336)
Q Consensus       268 did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvNH~  315 (336)
                      .+.+                   .|+.+|--|...|.||..|.+.--.
T Consensus       148 ~L~~-------------------~d~~lr~~l~qfR~DE~eH~d~Ai~  176 (204)
T COG2941         148 ELPN-------------------LDAELRAILAQFRDDELEHLDNAIA  176 (204)
T ss_pred             HHhh-------------------ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8832                   3568999999999999999986443

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=95.19  E-value=0.63  Score=37.10  Aligned_cols=99  Identities=23%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             hHH-HHHHHHHhHHHHHHHHHHhh-C------chHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHH
Q 019765          193 WIK-ALLEEAENERMHLMTFMEVA-K------PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE  264 (336)
Q Consensus       193 wI~-tLLeEAENERmHLLtfmel~-k------P~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~  264 (336)
                      -++ .+..-|..|+.|..++.++. +      |...............+..-......++..+-+..--+|..|+..|.+
T Consensus        28 ~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~  107 (139)
T cd01045          28 ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEE  107 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            354 45667899999998888874 1      222111111111111111123456667788888999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhh
Q 019765          265 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  312 (336)
Q Consensus       265 ~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdv  312 (336)
                      +++.++                     |...++++..|.+||..|...
T Consensus       108 ~~~~~~---------------------d~~~~~~~~~l~~~E~~H~~~  134 (139)
T cd01045         108 LAEKAE---------------------DPEVKKLFEELAEEERGHLRL  134 (139)
T ss_pred             HHHHcC---------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            998862                     457899999999999999754

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=93.11  E-value=1.2  Score=37.18  Aligned_cols=94  Identities=28%  Similarity=0.402  Sum_probs=64.8

Q ss_pred             hhccccCcchHHHHHHHHHhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhH
Q 019765          184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA  258 (336)
Q Consensus       184 LR~~~rd~GwI~tLLeEAENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEA  258 (336)
                      |-....|..-=+.+..-|+.|+-|..+|.++.     .|. ...+     ...|+  .++.-+++|..+.++..-.|+.|
T Consensus        20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~~~~-----~~~~~--~~l~~~~g~~~~l~~~~~~E~~a   91 (125)
T cd01044          20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-RPKL-----KIFFY--KLLARIFGPTFVLKLLERGEERA   91 (125)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CccH-----HHHHH--HHHHHHHhHHHHHHHHHHhHHhh
Confidence            43444443433466778999999999998885     221 0111     11111  12334568888999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhh
Q 019765          259 IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  312 (336)
Q Consensus       259 V~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdv  312 (336)
                      +..|+++++.                           +.++..|-.||..|...
T Consensus        92 i~~Y~~~~~~---------------------------~~~~~~Ii~dE~~H~~~  118 (125)
T cd01044          92 IEKYDRLLEE---------------------------RPELKEIIADELEHEEV  118 (125)
T ss_pred             HhhHHhhhhh---------------------------hHHHHHHHHHHHHHHHH
Confidence            9999998876                           35778899999999765

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=92.90  E-value=0.15  Score=45.27  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=76.7

Q ss_pred             eeeecccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 019765          163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI  242 (336)
Q Consensus       163 ~LETVA~VPGmV~gml~HLrSLR~~~rd~GwI~tLLeEAENERmHLLtfmel~kP~~~eR~lv~~aQgvffn~yf~~Yli  242 (336)
                      ++|-++|.-|=..++++-|..=..++.+...-..|++.|..|..|+-++.++..-      |---..+..|   ...|+-
T Consensus        25 l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~------Lg~~~~g~pw---~~~yv~   95 (156)
T cd01051          25 LQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAM------LLKDSQGVPW---TAAYIQ   95 (156)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCCcC---CCcccC
Confidence            5666777777666666666654445333344457888999999999887765210      0000112222   233332


Q ss_pred             C---hhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhh
Q 019765          243 S---PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  312 (336)
Q Consensus       243 S---Pr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdv  312 (336)
                      +   +...-+-.=-.|+.|+.+|.+.++.+                     +|.+++|++..|++||..|.+.
T Consensus        96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---------------------~Dp~v~~~l~~I~~rE~~H~~~  147 (156)
T cd01051          96 SSGNLVADLRSNIAAESRARLTYERLYEMT---------------------DDPGVKDTLSFLLVREIVHQNA  147 (156)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence            2   22222223334999999999999998                     2788999999999999999764

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=92.26  E-value=1.5  Score=33.00  Aligned_cols=96  Identities=25%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             CcchHHHHHHHHHhHHHHHHHHHHhh-----CchHHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHH
Q 019765          190 SGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE  264 (336)
Q Consensus       190 d~GwI~tLLeEAENERmHLLtfmel~-----kP~~~eR~lv~~aQgvffn~yf~~YliSPr~AHRfvGYLEEEAV~TYT~  264 (336)
                      +.++.+.+...+..|+.|...+.++.     +|.......       ..+.-......++..+-...--.|..++..|..
T Consensus        26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~   98 (130)
T cd00657          26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHL-------LAAYALPKTSDDPAEALRAALEVEARAIAAYRE   98 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-------HHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777888999999999988874     343322110       001111123345556666666678888888888


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhh
Q 019765          265 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN  313 (336)
Q Consensus       265 ~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvN  313 (336)
                      +++..+                     |..++|++..+..||..|...-
T Consensus        99 ~~~~~~---------------------d~~~~~~~~~~~~~E~~H~~~~  126 (130)
T cd00657          99 LIEQAD---------------------DPELRRLLERILADEQRHAAWF  126 (130)
T ss_pred             HHHhcC---------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence            887651                     6778999999999999998753

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>PRK13456 DNA protection protein DPS; Provisional

Probab=82.69  E-value=2.7  Score=39.11  Aligned_cols=119  Identities=19%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             HhhhhhccccCcchHHHHHHHHH-hHHHHHHHHHH-h---h-CchHH-HHHHHHHHHHHHHHHHHHHHHhChh---hHhh
Q 019765          180 HCKSLRRFEHSGGWIKALLEEAE-NERMHLMTFME-V---A-KPKWY-ERALVFAVQGVFFNAYFLGYLISPK---FAHR  249 (336)
Q Consensus       180 HLrSLR~~~rd~GwI~tLLeEAE-NERmHLLtfme-l---~-kP~~~-eR~lv~~aQgvffn~yf~~YliSPr---~AHR  249 (336)
                      |-..+.++.+++  |+..|+++- .|+-|-..+.+ |   + .|..- ..|.-+..+         .|.=.|.   ..-.
T Consensus        42 ~a~~~~G~~~e~--V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~---------~~~~~p~d~tdv~~  110 (186)
T PRK13456         42 LRAHLIGLEGEG--LKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISAC---------PDAYLPENPTDPKE  110 (186)
T ss_pred             HHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcC---------ccccCCCCcchHHH
Confidence            344455666542  666676665 89999865543 2   2 34321 112222222         1211133   2333


Q ss_pred             hhhhh---hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCChHHHHHHHhhhhhhhHhhhhcccccccccccc
Q 019765          250 MVGYL---EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL  326 (336)
Q Consensus       250 fvGYL---EEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp~datLrDvil~IRaDEa~HRdvNH~~ad~~~q~~~~  326 (336)
                      ++.-.   |..|+.+|++.++.+.                   ..|-+=+|+++.|-+||.+|.+=-..+=...+.|+-.
T Consensus       111 mL~~~L~AEr~AI~~Y~eii~~~~-------------------~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~~~~~~  171 (186)
T PRK13456        111 ILKVLLEAERCAIRTYTEICDMTA-------------------GKDPRTYDLALAILQEEIEHEAWFSELLGGGPSGHFR  171 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccee
Confidence            33322   7899999999999983                   3477889999999999999998766665555555544


Q ss_pred             cC
Q 019765          327 RE  328 (336)
Q Consensus       327 ~~  328 (336)
                      +.
T Consensus       172 ~~  173 (186)
T PRK13456        172 RS  173 (186)
T ss_pred             cC
Confidence            44

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 64/422 (15%), Positives = 108/422 (25%), Gaps = 129/422 (30%)

Query: 9   LFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLAL-GGEKEQQREENV 67
           L S +           R+   Q +R  +   V A    SR +  L L     E +  +NV
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 68  QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWK------W----NCFRPWEAYE 117
              G     GSG    K  V      A  V      + K      W    NC  P    E
Sbjct: 154 LIDGV---LGSG----KTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 118 --ADLSIDLKKHHAPTTFSDKMALWTVKSLR-WPTDLFFQRRYGCRAMM-LETVAAVPGM 173
               L   +  +    +         + S++     L   + Y    ++ L  V      
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQN-AKA 258

Query: 174 VGGMLLHCKSL---------------RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
                L CK L                    S       L   E + + L+ +++     
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQD 317

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG--------------YLEEEAIHSYTE 264
                L                  +P     ++               ++  + + +  E
Sbjct: 318 LPREVL----------------TTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 265 -FLKELDKGNI-----------ENVPAPAIA-TDYW----------------------RL 289
             L  L+                +   P I  +  W                      + 
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 290 PPNST--LKDVVLVVRA----DEAHHRD-VNHYASDIHYQGRQLRESPAP--------LG 334
           P  ST  +  + L ++     + A HR  V+HY     +    L   P          +G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL--IPPYLDQYFYSHIG 478

Query: 335 YH 336
           +H
Sbjct: 479 HH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1jkva_	266	Manganese catalase (T-catalase) {Lactobacillus pla	81.95

>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Lactobacillus plantarum [TaxId: 1590]

Probab=81.95  E-value=0.19  Score=45.15  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=80.2

Q ss_pred             eeeecccCChhHHHHHHHhhhhhccccCcchHH-HHHHHHHhHHHHHHHHHHhh-----CchH----H--HHHHHHHHHH
Q 019765          163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK-ALLEEAENERMHLMTFMEVA-----KPKW----Y--ERALVFAVQG  230 (336)
Q Consensus       163 ~LETVA~VPGmV~gml~HLrSLR~~~rd~GwI~-tLLeEAENERmHLLtfmel~-----kP~~----~--eR~lv~~aQg  230 (336)
                      ++|-++|.=|=..++++-|.---.++ +.+.|+ .|++=|--|..||-++-.+.     ..+.    .  +-.+....+|
T Consensus        25 L~e~~GG~~GElsa~~qYl~Q~~~~~-~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~~~G  103 (266)
T d1jkva_          25 LQESLGGQWGETTGMMSYLSQGWAST-GAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAG  103 (266)
T ss_dssp             HHHHHHSTTSHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHHH
T ss_pred             HHHHhCCCchHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHhcC
Confidence            56777888776667777766433443 445665 67788899999997665542     1100    0  0001111111


Q ss_pred             H---HHHH--------------HHHHHHhC---hhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCC
Q 019765          231 V---FFNA--------------YFLGYLIS---PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP  290 (336)
Q Consensus       231 v---ffn~--------------yf~~YliS---Pr~AHRfvGYLEEEAV~TYT~~L~did~G~l~n~pAP~IAi~YW~Lp  290 (336)
                      .   ++..              +...|+.+   +...-|..=..|..|..+|.+.++.+                     
T Consensus       104 ~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~t---------------------  162 (266)
T d1jkva_         104 MDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMT---------------------  162 (266)
T ss_dssp             SCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred             CCcceeeeccCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence            0   1100              11233332   56666777778999999999998877                     


Q ss_pred             CCCChHHHHHHHhhhhhhhHh
Q 019765          291 PNSTLKDVVLVVRADEAHHRD  311 (336)
Q Consensus       291 ~datLrDvil~IRaDEa~HRd  311 (336)
                      +|..++|+|..|++||..|..
T Consensus       163 dDp~vk~~L~fL~~rE~~H~~  183 (266)
T d1jkva_         163 EDEGVRDMLKFLLARETQHQL  183 (266)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHH
Confidence            477899999999999999965