Citrus Sinensis ID: 019768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MSMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEcccEEEEEccccccccccccccEEEccccccccHHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEcEEEEEEEccccccccccccccHHHHHccccccEEEEEEccccccccccEEEEEcccccccEEEEEEccccccccccccccEEccHHHHHHHHHcccccccccEEEEEEEccccccccccccEEEEccEEEEEEEEEEcccccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccHcccHHHcccHHHHHHHHHHHHccccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHccccccccccccccccccEEEEEEEEEcccEEEEcccccccEEEEEEcccEEEEEEEEcccccccccEEEEEcccccccEEEEEEEcccccccccccccEEcHHHHHHHHHHccccccccccEEEEEEcccccccccccEEEEEccEEEEEEEEEEEEccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
msmrnnnnrplelgkpssgkgrlKDLLLQRDnricadcgapdpkwasanIGVFICLKCcgvhrslgtHVSKVLSVtlddwsddEVDAMIEVGGNSSANAIYEafipegvskpgpdssheIRSKFIRSKYELQeflkpslriasgkpsaslqssFSRKIIDSfrstnssqkkdvgMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKsnlnpvwneelmlsvpqeygpvklevfdhdtfsaddimgeaeiDIQPLLtsalafgdpemfgnmqigkwlksddnalledstiniidGKVKQKISLKLQnvesgelelelewmpldq
Flexible Loop (DISEMBL)
msmrnnnnrplelgkpssgkgRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIpegvskpgpdsSHEIRSKFIRSKYELQEFLKPslriasgkpsaslqssfsrKIIDSfrstnssqkkdvgmVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTiniidgkvkQKISLKlqnvesgelelelewmpldq
Low Complexity Region (SEG)
MSMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Disordered region (IsUnstruct)
************************DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFI*******************************************************************VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV****************
Disordered Region (DISOPRED)
*************************LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL*************************************VGMV*FIGL***************************G*******IVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD*
Disordered Region (DISEMBL)
*********PLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGV********HEIRSKFIRSKYELQEFLKPSLRIA***********FSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Disordered Region (DISPRO)
*****************SGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS***********************************GMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q9FVJ3	337	ADP-ribosylation factor G	yes	no	0.964	0.961	0.778	1e-153
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.982	0.982	0.755	1e-150
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.952	0.831	0.505	1e-94
Q7TN29	428	Stromal membrane-associat	yes	no	0.342	0.268	0.487	1e-29
Q8WU79	429	Stromal membrane-associat	yes	no	0.342	0.268	0.487	1e-29
Q5EA00	429	Stromal membrane-associat	yes	no	0.342	0.268	0.487	1e-29
Q5F413	428	Stromal membrane-associat	yes	no	0.342	0.268	0.478	8e-29
Q9NGC3	995	Centaurin-gamma-1A OS=Dro	no	no	0.345	0.116	0.474	1e-26
Q8VHH5	910	Arf-GAP with GTPase, ANK	no	no	0.315	0.116	0.462	1e-24
Q96P47	875	Arf-GAP with GTPase, ANK	no	no	0.315	0.121	0.472	1e-24

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/330 (77%), Positives = 294/330 (89%), Gaps = 6/330 (1%)

Query: 13  LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV 72
           LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKV
Sbjct: 8   LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67

Query: 73  LSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ 132
           LSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE Q
Sbjct: 68  LSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQ 127

Query: 133 EFLKPSLRI-----ASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKV 186
           EFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV +
Sbjct: 128 EFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTI 187

Query: 187 VKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 246
            KG N+AIRDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VF
Sbjct: 188 KKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVF 247

Query: 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIID 306
           D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI D
Sbjct: 248 DYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIAD 307

Query: 307 GKVKQKISLKLQNVESGELELELEWMPLDQ 336
           GKVKQ++ +KLQNVESGELELE+EW+PL+Q
Sbjct: 308 GKVKQEVQIKLQNVESGELELEMEWLPLEQ 337

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/335 (75%), Positives = 295/335 (88%), Gaps = 5/335 (1%)

Query: 7   NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
           +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLG
Sbjct: 2   SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLG 61

Query: 67  THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           TH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR
Sbjct: 62  THISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIR 121

Query: 127 SKYELQEFLKPSLRIASGK----PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGL 181
           +KYELQEFLKPSLRI SGK     SA L SS SRKI+DSFR+ +SSQ     GMVEFIGL
Sbjct: 122 AKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGL 181

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 241
           LKV + KG NLAIRDMMSSDPYVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPV
Sbjct: 182 LKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPV 241

Query: 242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDST 301
           KL+V+D+DTFSADDIMGEA+IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS 
Sbjct: 242 KLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSI 301

Query: 302 INIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
           INI+DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct: 302 INIVDGKVKQEVQIKLQNVESGELELEMEWLPLDQ 336

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  346 bits (887), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/342 (50%), Positives = 235/342 (68%), Gaps = 22/342 (6%)

Query: 17  SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVT 76
           S  + RL+ LL Q  N+ CADCG+P+PKW S ++GVFIC+KC GVHRSLG H+SKVLSV 
Sbjct: 44  SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVK 103

Query: 77  LDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLK 136
           LD+W+DD+VD ++  GGN++ N  +EA   +   KP PDS++E R+ FIR KYE  +F+ 
Sbjct: 104 LDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMD 163

Query: 137 PS----------LRIASGKPS--ASLQSSFSRKIIDSFRSTNSSQKKD----------VG 174
           P            R  +  PS  ++   S   +I  +FR++   ++ D           G
Sbjct: 164 PKDGALCTYQQPSRTNTSPPSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAG 223

Query: 175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
           MVEF+GL+KV VVKG NLA+RD+M+SDPYV+L LGQQ+V+T ++K+NLNPVWNE LMLS+
Sbjct: 224 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSI 283

Query: 235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 294
           P+   P+K+ V+D DTFS DD MGEAEIDIQPL+++A A+    +   MQ+G W+ S +N
Sbjct: 284 PEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKEN 343

Query: 295 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
            L+ D  I + DGKVKQ ISL+LQNVE G LE++LE +PL Q
Sbjct: 344 TLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPLTQ 385

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 4/119 (3%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 16  LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 75

Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct: 76  EQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 4/119 (3%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 16  LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 75

Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct: 76  EQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 4/119 (3%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 16  LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 75

Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct: 76  EQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKKYMDRSLDI 130

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 4/119 (3%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L  LL + +N+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 16  LGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 75

Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           +++  M E+ GN  AN +YEAF+PE   +P  D + E    FIR KYE ++++  S+ I
Sbjct: 76  EQIQCMQEM-GNGKANRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKKYMDRSIDI 130

GTPase activating protein. May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Gallus gallus (taxid: 9031)

>sp|Q9NGC3|CEG1A_DROME Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=2 SV=2

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DCGAP+P+WAS N+GV +C++C GVHR+LG+H+SKV S+ LDDW    +  M+ +
Sbjct: 714 NGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAI 773

Query: 92  GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSAS 149
            GNS AN+++E+   + V KP   +S E + +++RSKYE +EFL P    +S  PS S
Sbjct: 774 -GNSLANSVWESNTRQRV-KPTSQASREDKERWVRSKYEAKEFLTPLGNGSSAHPSPS 829

GTPase-activating protein for the ADP ribosylation factor family.

Drosophila melanogaster (taxid: 7227)

>sp|Q8VHH5|AGAP3_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 30  RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMI 89
           R N +C DC AP+P WAS N+G  +C++C G+HR LG H+S+V S+ LDDW   E+ A++
Sbjct: 671 RGNSLCIDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW-PPELLAVM 729

Query: 90  EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 137
              GN+ AN+++E  + +G SKPGP++  E + ++IR+KYE + FL P
Sbjct: 730 TAMGNALANSVWEGAL-DGYSKPGPEACREEKERWIRAKYEQKLFLAP 776

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Mus musculus (taxid: 10090)

>sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 74/108 (68%), Gaps = 2/108 (1%)

Query: 30  RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMI 89
           R N  C DC AP+P WAS N+G  +C++C G+HR LG H+S+V S+ LDDW   E+ A++
Sbjct: 636 RGNSFCIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW-PPELLAVM 694

Query: 90  EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 137
              GN+ AN+++E  +  G SKPGPD+  E + ++IR+KYE + FL P
Sbjct: 695 TAMGNALANSVWEGAL-GGYSKPGPDACREEKERWIRAKYEQKLFLAP 741

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
255564387	330	ARF GTPase activator, putative [Ricinus	0.979	0.996	0.811	1e-160
311701729	332	ARF-GAP protein [Phytolacca acinosa]	0.970	0.981	0.789	1e-153
359483951	330	PREDICTED: ADP-ribosylation factor GTPas	0.976	0.993	0.800	1e-152
110738686	337	hypothetical protein [Arabidopsis thalia	0.964	0.961	0.781	1e-152
18415638	337	ADP-ribosylation factor GTPase-activatin	0.964	0.961	0.778	1e-151
21594052	337	putative GTPase activating protein [Arab	0.964	0.961	0.778	1e-151
297804038	332	zac [Arabidopsis lyrata subsp. lyrata] g	0.970	0.981	0.771	1e-151
297813911	336	ARF-GAP domain 13 [Arabidopsis lyrata su	0.982	0.982	0.767	1e-150
7267293	334	putative protein [Arabidopsis thaliana]	0.979	0.985	0.757	1e-149
18412932	336	putative ADP-ribosylation factor GTPase-	0.982	0.982	0.755	1e-149

>gi|255564387|ref|XP_002523190.1| ARF GTPase activator, putative [Ricinus communis] gi|223537597|gb|EEF39221.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/329 (81%), Positives = 302/329 (91%)

Query: 8   NRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGT 67
           NR  +L +P SGK RLKDLLL+ DNR CADC APDPKWASANIGVFICLKCCGVHRSLGT
Sbjct: 2   NRVSDLQRPGSGKRRLKDLLLKSDNRFCADCAAPDPKWASANIGVFICLKCCGVHRSLGT 61

Query: 68  HVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRS 127
           H+SKVLSVTLD+WSDDE+DAMIEVGGNS+ANAIYEAFIPEGVSKP PD+SH+ R +FIRS
Sbjct: 62  HISKVLSVTLDEWSDDEIDAMIEVGGNSTANAIYEAFIPEGVSKPHPDASHDERMRFIRS 121

Query: 128 KYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVV 187
           KYELQEFLKPSLRI SGK + S+QSSFSR+ +DSFR  ++SQ  + GMVEFIGLLKVKV 
Sbjct: 122 KYELQEFLKPSLRITSGKSTMSVQSSFSRRFLDSFRIASTSQTSEEGMVEFIGLLKVKVK 181

Query: 188 KGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFD 247
            G NLAIRDMMSSDPYVVL LG+QTVQTT+V+SNLNPVWNEELMLSVPQ +GPVKL+VFD
Sbjct: 182 NGTNLAIRDMMSSDPYVVLTLGKQTVQTTVVRSNLNPVWNEELMLSVPQNFGPVKLQVFD 241

Query: 248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDG 307
           HDTFSADDIMGEAEID+QPL+TSA+AFG P+MFGNMQIGKWLKS+DNAL+EDS INI+DG
Sbjct: 242 HDTFSADDIMGEAEIDVQPLITSAMAFGRPDMFGNMQIGKWLKSNDNALMEDSIINIVDG 301

Query: 308 KVKQKISLKLQNVESGELELELEWMPLDQ 336
           KVKQ+ISLKLQNVESGEL+LE++W+PL+Q
Sbjct: 302 KVKQEISLKLQNVESGELQLEMQWIPLEQ 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311701729|gb|ADQ00629.1| ARF-GAP protein [Phytolacca acinosa]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/328 (78%), Positives = 307/328 (93%), Gaps = 2/328 (0%)

Query: 11  LELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVS 70
           +ELG+P+SGK RLKDLLLQ+DNR CADCGAPDPKWASANIGVFICLKCCGVHRSLGTH+S
Sbjct: 5   MELGRPTSGKRRLKDLLLQKDNRFCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHIS 64

Query: 71  KVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 130
           KVLSVTLD+WSD+++DAM+EVGGN++ANAIYEAFIPEG SKPGPD+SH+ R +FIRSKYE
Sbjct: 65  KVLSVTLDEWSDEDIDAMVEVGGNAAANAIYEAFIPEGRSKPGPDASHDDRMRFIRSKYE 124

Query: 131 LQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV--GMVEFIGLLKVKVVK 188
           LQEFLKPSLRI S    +SLQ+SFS+K+++SFRS+NSS+K +   GMVEFIG+LKVKVVK
Sbjct: 125 LQEFLKPSLRIVSMSDKSSLQASFSKKLVNSFRSSNSSKKSENSEGMVEFIGVLKVKVVK 184

Query: 189 GINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH 248
           G NLA+RDM+SSDPYVVL LGQQTVQT++V+SNLNPVWNEELMLSVPQ YGPVK++VFD+
Sbjct: 185 GTNLAVRDMLSSDPYVVLNLGQQTVQTSVVRSNLNPVWNEELMLSVPQRYGPVKVKVFDY 244

Query: 249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGK 308
           DTFSADDIMGEAE+DIQPL+TSA+A+GDP MFG+MQIGKWLKS DNAL+EDS INI++GK
Sbjct: 245 DTFSADDIMGEAELDIQPLITSAMAYGDPGMFGDMQIGKWLKSQDNALIEDSIINIVNGK 304

Query: 309 VKQKISLKLQNVESGELELELEWMPLDQ 336
           VKQ++ LKLQNVESG+LE+E+EW+PL+Q
Sbjct: 305 VKQEMQLKLQNVESGDLEIEVEWVPLEQ 332

Source: Phytolacca acinosa

Species: Phytolacca acinosa

Genus: Phytolacca

Family: Phytolaccaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483951|ref|XP_002263067.2| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Vitis vinifera] gi|297740835|emb|CBI31017.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/331 (80%), Positives = 303/331 (91%), Gaps = 3/331 (0%)

Query: 7   NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
           ++RP ELG+P+SGK RLKDLLL+ DNR CADCGAPDPKWASANIGVFICLKCCGVHRSLG
Sbjct: 2   SDRPYELGRPASGKRRLKDLLLKSDNRTCADCGAPDPKWASANIGVFICLKCCGVHRSLG 61

Query: 67  THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           TH+SKVLSV LDDWSDDE+DAM+EVGGNSSAN+IYEAFIPEGV+KP P+SSHE R +FIR
Sbjct: 62  THISKVLSVALDDWSDDEIDAMVEVGGNSSANSIYEAFIPEGVTKPKPNSSHEERMRFIR 121

Query: 127 SKYELQEFLKPSLRIAS-GKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVK 185
           SKYELQEFLKPSLRIAS     +SLQSSFSRK++D+FRS+NS  +K  GMVE+IGLLKVK
Sbjct: 122 SKYELQEFLKPSLRIASVSSGKSSLQSSFSRKLMDNFRSSNS--QKLEGMVEYIGLLKVK 179

Query: 186 VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV 245
           V++G NLA+RDM+SSDPYVVL LG QTVQT ++ SNLNPVWNEELMLSVP +YGP+K++V
Sbjct: 180 VIRGKNLAVRDMLSSDPYVVLTLGPQTVQTQVITSNLNPVWNEELMLSVPMDYGPIKVKV 239

Query: 246 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINII 305
           FDHDTFSADDIMGEAEIDIQPL+TSA+AFG+ EMFG+MQIGKWLKS DNALLEDS INII
Sbjct: 240 FDHDTFSADDIMGEAEIDIQPLITSAMAFGNAEMFGDMQIGKWLKSHDNALLEDSIINII 299

Query: 306 DGKVKQKISLKLQNVESGELELELEWMPLDQ 336
            GKVKQ++ LKLQNVESGEL+LE+EW+PLDQ
Sbjct: 300 GGKVKQEVQLKLQNVESGELDLEIEWLPLDQ 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738686|dbj|BAF01268.1| hypothetical protein [Arabidopsis thaliana]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/330 (78%), Positives = 295/330 (89%), Gaps = 6/330 (1%)

Query: 13  LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV 72
           LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKV
Sbjct: 8   LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67

Query: 73  LSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ 132
           LSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE Q
Sbjct: 68  LSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQ 127

Query: 133 EFLKPSLRI-----ASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKV 186
           EFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV +
Sbjct: 128 EFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTI 187

Query: 187 VKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 246
            KG N+AIRDMMSSDPYVVL LGQQ VQ+T+VKSNLNPVWNEELMLSVP  YG VKL+VF
Sbjct: 188 KKGTNMAIRDMMSSDPYVVLTLGQQKVQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVF 247

Query: 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIID 306
           D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI D
Sbjct: 248 DYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIAD 307

Query: 307 GKVKQKISLKLQNVESGELELELEWMPLDQ 336
           GKVKQ++ +KLQNVESGELELE+EW+PL+Q
Sbjct: 308 GKVKQEVQIKLQNVESGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415638|ref|NP_567620.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|30685338|ref|NP_849416.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|42572969|ref|NP_974581.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|42572971|ref|NP_974582.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|75172634|sp|Q9FVJ3.1|AGD12_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD12; Short=ARF GAP AGD12; AltName: Full=Protein ARF-GAP DOMAIN 12; Short=AtAGD12; AltName: Full=Zinc- and calcium-binding protein; Short=AtZAC gi|9957238|gb|AAG09280.1|AF177381_1 zinc finger and C2 domain protein [Arabidopsis thaliana] gi|17064946|gb|AAL32627.1| putative protein [Arabidopsis thaliana] gi|31711810|gb|AAP68261.1| At4g21160 [Arabidopsis thaliana] gi|332659011|gb|AEE84411.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659012|gb|AEE84412.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659013|gb|AEE84413.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana] gi|332659014|gb|AEE84414.1| ADP-ribosylation factor GTPase-activating protein AGD12 [Arabidopsis thaliana]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/330 (77%), Positives = 294/330 (89%), Gaps = 6/330 (1%)

Query: 13  LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV 72
           LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKV
Sbjct: 8   LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67

Query: 73  LSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ 132
           LSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE Q
Sbjct: 68  LSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQ 127

Query: 133 EFLKPSLRI-----ASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKV 186
           EFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV +
Sbjct: 128 EFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTI 187

Query: 187 VKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 246
            KG N+AIRDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VF
Sbjct: 188 KKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVF 247

Query: 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIID 306
           D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI D
Sbjct: 248 DYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIAD 307

Query: 307 GKVKQKISLKLQNVESGELELELEWMPLDQ 336
           GKVKQ++ +KLQNVESGELELE+EW+PL+Q
Sbjct: 308 GKVKQEVQIKLQNVESGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594052|gb|AAM65970.1| putative GTPase activating protein [Arabidopsis thaliana]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/330 (77%), Positives = 294/330 (89%), Gaps = 6/330 (1%)

Query: 13  LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV 72
           LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKV
Sbjct: 8   LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67

Query: 73  LSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ 132
           LSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE Q
Sbjct: 68  LSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQ 127

Query: 133 EFLKPSLRI-----ASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKV 186
           EFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV +
Sbjct: 128 EFLKPSLRITSVRVSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTI 187

Query: 187 VKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 246
            KG N+AIRDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VF
Sbjct: 188 KKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVF 247

Query: 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIID 306
           D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI D
Sbjct: 248 DYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIAD 307

Query: 307 GKVKQKISLKLQNVESGELELELEWMPLDQ 336
           GKVKQ++ +KLQNVESGELELE+EW+PL+Q
Sbjct: 308 GKVKQEVQIKLQNVESGELELEMEWLPLEQ 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804038|ref|XP_002869903.1| zac [Arabidopsis lyrata subsp. lyrata] gi|297315739|gb|EFH46162.1| zac [Arabidopsis lyrata subsp. lyrata]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/332 (77%), Positives = 293/332 (88%), Gaps = 6/332 (1%)

Query: 11  LELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVS 70
           +   K  SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLGTH+S
Sbjct: 1   MSYSKSGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHIS 60

Query: 71  KVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 130
           KVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE
Sbjct: 61  KVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYE 120

Query: 131 LQEFLKPSLRIASGKPSAS-----LQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKV 184
            QEFLKPSLRI S + S++     L SS S+KIIDSFR+ +SSQ+  + GMVEFIGLLKV
Sbjct: 121 HQEFLKPSLRITSVRGSSTKSTPYLSSSISKKIIDSFRTNSSSQQPQLEGMVEFIGLLKV 180

Query: 185 KVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLE 244
            + KG NLA+RDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+
Sbjct: 181 TIKKGTNLAVRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQ 240

Query: 245 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINI 304
           VFD+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI
Sbjct: 241 VFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINI 300

Query: 305 IDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
            DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct: 301 ADGKVKQEVQIKLQNVESGELELEMEWLPLDQ 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813911|ref|XP_002874839.1| ARF-GAP domain 13 [Arabidopsis lyrata subsp. lyrata] gi|297320676|gb|EFH51098.1| ARF-GAP domain 13 [Arabidopsis lyrata subsp. lyrata]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/335 (76%), Positives = 296/335 (88%), Gaps = 5/335 (1%)

Query: 7   NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
           +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLG
Sbjct: 2   SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLG 61

Query: 67  THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           TH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD SH+ R +FIR
Sbjct: 62  THISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFVPDTCSKPGPDVSHDQRMRFIR 121

Query: 127 SKYELQEFLKPSLRIASGK----PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGL 181
           +KYELQEFLKPSLRI SGK     SA L SS SRKI+DSFR+ +SSQK    GMVEFIGL
Sbjct: 122 AKYELQEFLKPSLRITSGKCSTKSSAFLTSSLSRKIMDSFRTNSSSQKIFQEGMVEFIGL 181

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 241
           LKV + KG NLAIRDMMSSDPYVVL LG+Q +QTT+V SNLNPVWN+ELMLSVP+ YGPV
Sbjct: 182 LKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVVNSNLNPVWNQELMLSVPESYGPV 241

Query: 242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDST 301
           KL+V+D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS 
Sbjct: 242 KLQVYDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSI 301

Query: 302 INIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
           INI+DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct: 302 INIVDGKVKQEVQIKLQNVESGELELEMEWLPLDQ 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267293|emb|CAB81075.1| putative protein [Arabidopsis thaliana]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/334 (75%), Positives = 296/334 (88%), Gaps = 5/334 (1%)

Query: 7   NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
           +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLG
Sbjct: 2   SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLG 61

Query: 67  THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           TH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR
Sbjct: 62  THISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIR 121

Query: 127 SKYELQEFLKPSLRIASGK----PSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLL 182
           +KYELQEFLKPSLRI SGK     SA L SS SRKI+DSFR+ +SSQ  + GMVEFIGLL
Sbjct: 122 AKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTME-GMVEFIGLL 180

Query: 183 KVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK 242
           KV + KG NLAIRDMMSSDPYVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPVK
Sbjct: 181 KVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVK 240

Query: 243 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTI 302
           L+V+D+DTFSADDIMGEA+IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS I
Sbjct: 241 LQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSII 300

Query: 303 NIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
           NI+DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct: 301 NIVDGKVKQEVQIKLQNVESGELELEMEWLPLDQ 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412932|ref|NP_567292.1| putative ADP-ribosylation factor GTPase-activating protein AGD13 [Arabidopsis thaliana] gi|75155915|sp|Q8LFN9.1|AGD13_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD13; Short=ARF GAP AGD13; AltName: Full=Protein ARF-GAP DOMAIN 13; Short=AtAGD13 gi|21536965|gb|AAM61306.1| putative zinc finger and C2 domain protein [Arabidopsis thaliana] gi|89000963|gb|ABD59071.1| At4g05330 [Arabidopsis thaliana] gi|332657106|gb|AEE82506.1| putative ADP-ribosylation factor GTPase-activating protein AGD13 [Arabidopsis thaliana]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/335 (75%), Positives = 295/335 (88%), Gaps = 5/335 (1%)

Query: 7   NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
           +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLG
Sbjct: 2   SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLG 61

Query: 67  THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           TH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR
Sbjct: 62  THISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIR 121

Query: 127 SKYELQEFLKPSLRIASGK----PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGL 181
           +KYELQEFLKPSLRI SGK     SA L SS SRKI+DSFR+ +SSQ     GMVEFIGL
Sbjct: 122 AKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGL 181

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 241
           LKV + KG NLAIRDMMSSDPYVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPV
Sbjct: 182 LKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPV 241

Query: 242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDST 301
           KL+V+D+DTFSADDIMGEA+IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS 
Sbjct: 242 KLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSI 301

Query: 302 INIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
           INI+DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct: 302 INIVDGKVKQEVQIKLQNVESGELELEMEWLPLDQ 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	0.964	0.961	0.781	1.9e-138
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.982	0.982	0.755	5.8e-137
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.595	0.519	0.532	7.2e-88
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	0.482	0.931	0.441	1.4e-32
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.464	0.928	0.466	3.7e-32
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.455	0.827	0.467	7.7e-32
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.473	0.963	0.443	7.7e-32
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.458	0.885	0.484	1.3e-31
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.452	0.844	0.470	2e-31
UNIPROTKB|B2DCZ7	429	SMAP1L "Uncharacterized protei	0.342	0.268	0.487	3.8e-31

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
 Identities = 258/330 (78%), Positives = 294/330 (89%)

Query:    13 LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV 72
             LGKP SGK R++DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKV
Sbjct:     8 LGKPGSGKRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKV 67

Query:    73 LSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ 132
             LSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE Q
Sbjct:    68 LSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQ 127

Query:   133 EFLKPSLRIAS--G---KPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKV 186
             EFLKPSLRI S  G   K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV +
Sbjct:   128 EFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTI 187

Query:   187 VKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF 246
              KG N+AIRDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELMLSVP  YG VKL+VF
Sbjct:   188 KKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVF 247

Query:   247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIID 306
             D+DTFSADDIMGEAEIDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DNAL+EDS INI D
Sbjct:   248 DYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIAD 307

Query:   307 GKVKQKISLKLQNVESGELELELEWMPLDQ 336
             GKVKQ++ +KLQNVESGELELE+EW+PL+Q
Sbjct:   308 GKVKQEVQIKLQNVESGELELEMEWLPLEQ 337

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 253/335 (75%), Positives = 295/335 (88%)

Query:     7 NNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLG 66
             +N    LGKP SGK R++DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLG
Sbjct:     2 SNYAAGLGKPGSGKRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLG 61

Query:    67 THVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
             TH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR
Sbjct:    62 THISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIR 121

Query:   127 SKYELQEFLKPSLRIASGK----PSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGL 181
             +KYELQEFLKPSLRI SGK     SA L SS SRKI+DSFR+ +SSQ     GMVEFIGL
Sbjct:   122 AKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGL 181

Query:   182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 241
             LKV + KG NLAIRDMMSSDPYVVL LG+Q +QTT++ SNLNPVWN+ELMLSVP+ YGPV
Sbjct:   182 LKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPV 241

Query:   242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDST 301
             KL+V+D+DTFSADDIMGEA+IDIQPL+TSA+AFGDPEMFG+MQIGKWLKS DN L++DS 
Sbjct:   242 KLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSI 301

Query:   302 INIIDGKVKQKISLKLQNVESGELELELEWMPLDQ 336
             INI+DGKVKQ++ +KLQNVESGELELE+EW+PLDQ
Sbjct:   302 INIVDGKVKQEVQIKLQNVESGELELEMEWLPLDQ 336

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
 Identities = 108/203 (53%), Positives = 142/203 (69%)

Query:   137 PSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKD---VGMVEFIGLLKVKVVKGINLA 193
             PSL  AS + + +      R       S +   KK     GMVEF+GL+KV VVKG NLA
Sbjct:   183 PSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLA 242

Query:   194 IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA 253
             +RD+M+SDPYV+L LGQQ+V+T ++K+NLNPVWNE LMLS+P+   P+K+ V+D DTFS 
Sbjct:   243 VRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFST 302

Query:   254 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKI 313
             DD MGEAEIDIQPL+++A A+    +   MQ+G W+ S +N L+ D  I + DGKVKQ I
Sbjct:   303 DDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDI 362

Query:   314 SLKLQNVESGELELELEWMPLDQ 336
             SL+LQNVE G LE++LE +PL Q
Sbjct:   363 SLRLQNVERGVLEIQLECLPLTQ 385

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 72/163 (44%), Positives = 112/163 (68%)

Query:   170 KKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEE 229
             +++V M E +GL+++ V +GI+LA RD +SSDP+VV+ +G Q +++  VK+N NP WNEE
Sbjct:     5 EEEVEMKELVGLVRILVKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEE 64

Query:   230 LMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWL 289
             L L++     PVKL V+D DTF+ADD MG+A+ID++P L      G  E+    ++ + +
Sbjct:    65 LTLAIEDPNEPVKLMVYDKDTFTADDKMGDAQIDMKPFL-DVHKLGLKELPHGKELKRIV 123

Query:   290 KSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332
              + DN L EDS I   +GK+ Q + L L+NVE G++E++LEW+
Sbjct:   124 PTRDNCLSEDSIIVSDNGKIVQDMILLLKNVECGKVEIQLEWL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 76/163 (46%), Positives = 109/163 (66%)

Query:   175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
             M   +G+L+V+V +G+NLA+RD+ SSDPYVVL+LG+Q ++T +VK N+NP W E+L  +V
Sbjct:     4 MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query:   235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF---GDPEMFGNMQIGKWLKS 291
                  P+ L V+DHD FS DD MG+AEID++P +  AL     G P+      IG    S
Sbjct:    64 TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYI-EALRMELSGLPDGTIISTIGP---S 119

Query:   292 DDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 334
               N L E+S I  I+ ++ Q I L+L+NVE GE+E+EL+W+ L
Sbjct:   120 RGNCLAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDL 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/154 (46%), Positives = 101/154 (65%)

Query:   179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
             +G+L+V V +GINLAIRD  +SDPYVV+ L  Q ++T ++ +N NPVWNE+L LS+    
Sbjct:     6 LGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVN 65

Query:   239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGN-MQIGKWLKSDDNALL 297
              P++L VFD D FS DD MG+AEID +P L +     D +   N   I +      N L 
Sbjct:    66 DPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIKRIRPGRTNCLA 125

Query:   298 EDSTINIIDGKVKQKISLKLQNVESGELELELEW 331
             E+S+I   +GK+ Q++ L+L+NVE GE+EL LEW
Sbjct:   126 EESSITWSNGKIMQEMILRLKNVECGEVELMLEW 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/160 (44%), Positives = 109/160 (68%)

Query:   175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
             M E +GLL+++V +GINLA RD +SSDP+VV+ +G Q ++T +V++N NP WNEEL L++
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLAL 60

Query:   235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 294
                  PV L V+D DTF++ D MG+A+IDI+P L      G  E+    +I + + + +N
Sbjct:    61 RHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFL-EVHKMGLQELPDGTEIKRVVPNREN 119

Query:   295 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 334
              L E S+I   +GK+ Q + L L+NVE GE+E++LEW+ +
Sbjct:   120 CLAEASSIVSNNGKIVQNMILLLRNVECGEVEIQLEWIDI 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 79/163 (48%), Positives = 105/163 (64%)

Query:   175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
             M   +GLL++ V++G+NLAIRD  SSDPYV++R+G+Q ++T ++K NLN  WNE+L LSV
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:   235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF-----GDPEMFGNMQIGKWL 289
                  PVK+ V+D D FS DD MG+A   I P L  A+       G PE  G + I K  
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFL-EAIRIQNQLGGLPE--GTV-IMKIQ 116

Query:   290 KSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332
              S  N L E+S I    GK+ Q + LKLQNVE GE+EL+LEW+
Sbjct:   117 ASRQNCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWI 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/155 (47%), Positives = 100/155 (64%)

Query:   179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
             +GLL + V +GINLAIRD  SSDPY+VL +  QT++T +VK N NPVWNEE+ +++    
Sbjct:     6 LGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPN 65

Query:   239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDP--EMFGNMQIGKWLKSDDNAL 296
              P++L VFD D F+ DD MG+A IDIQP L  AL  G     +     I +   S  N L
Sbjct:    66 VPIRLTVFDWDKFTGDDKMGDANIDIQPYL-EALKMGMELLRLPNGCAIKRVQPSRHNCL 124

Query:   297 LEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331
              ++S+I   +GK+ Q + L+L NVE GE+E+ LEW
Sbjct:   125 SDESSIVWNNGKITQDLILRLNNVECGEIEIMLEW 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B2DCZ7 SMAP1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 58/119 (48%), Positives = 83/119 (69%)

Query:    23 LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
             L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct:    16 LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 75

Query:    83 DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
             +++  M E+G N  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:    76 EQIQCMQEMG-NGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FVJ3	AGD12_ARATH	No assigned EC number	0.7787	0.9642	0.9614	yes	no
Q8LFN9	AGD13_ARATH	No assigned EC number	0.7552	0.9821	0.9821	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ZAC	ZAC; ARF GTPase activator/ phospholipid binding; ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. ; GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids (337 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	OPR3	OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase; Encodes a 12-oxophytodienoate reductase [...] (391 aa)					•				0.829
	MRH2	MRH2 (MORPHOGENESIS OF ROOT HAIR 2); actin binding / microtubule binding / microtubule motor; A [...] (941 aa)							•		0.659
	EIF4A-2	EIF4A-2; ATP-dependent helicase/ translation initiation factor; member of eIF4A - eukaryotic in [...] (412 aa)							•		0.468
	ATARF1	ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding; Gen [...] (181 aa)							•		0.466
	ARF1A1C	ARF1A1C; GTP binding / phospholipase activator/ protein binding; Gene encoding ADP-ribosylation [...] (181 aa)							•		0.463
	ADL6	ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase; involved in trafficking from the trans-Golgi Network to [...] (914 aa)							•		0.435
	PEX5	PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding; Encodes the p [...] (728 aa)							•		0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-74
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	8e-52
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	3e-43
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	1e-35
cd00030	102	cd00030, C2, C2 domain	4e-23
pfam00168	85	pfam00168, C2, C2 domain	1e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-21
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	8e-18
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	9e-18
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-17
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-17
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	8e-17
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	3e-16
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-15
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-14
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	2e-13
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-12
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	1e-11
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-11
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-11
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	3e-11
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-11
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	4e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-10
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-10
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-10
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	2e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	5e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-09
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-09
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	5e-09
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	1e-08
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-08
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	7e-08
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	7e-08
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	1e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-07
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	3e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	3e-07
PLN03131	705	PLN03131, PLN03131, hypothetical protein; Provisio	5e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	6e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	8e-07
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-06
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	1e-06
PLN03119	648	PLN03119, PLN03119, putative ADP-ribosylation fact	1e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-06
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-06
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	4e-06
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	4e-06
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	5e-06
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	6e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	8e-06
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	8e-06
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	9e-06
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	1e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	1e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	7e-05
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	1e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-04
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	2e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	4e-04
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	7e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	0.001
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	0.002
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	0.002
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	0.003
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.004

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  226 bits (577), Expect = 1e-74
 Identities = 86/145 (59%), Positives = 104/145 (71%)

Query: 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
           +GLLKV+VV+G NLA+RD  SSDPYVVL LG Q V+T ++K NLNPVWNEEL LSVP   
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298
            P+KLEVFD DTFS DD MGEAEID++PL+ +A      +  G  QI K L S +N L  
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLAS 120

Query: 299 DSTINIIDGKVKQKISLKLQNVESG 323
           +S I   DGK+ Q + LKL+NVESG
Sbjct: 121 ESHITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  167 bits (424), Expect = 8e-52
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           K  L++L     N++CADCGAP+P WAS N+G+FIC++C GVHRSLG H+SKV S+TLD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 80  WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138
           W+ ++++ M + GGN  AN  +EA +P     P   S  E R  FIR+KY  + F +  
Sbjct: 61  WTPEQLEFM-KAGGNKRANEFWEANLP-PPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score =  144 bits (366), Expect = 3e-43
 Identities = 53/115 (46%), Positives = 78/115 (67%), Gaps = 1/115 (0%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           LK L     N+ C DCGAP+P WAS N+GVF+C++C G+HRSLG H+SKV S+TLD W++
Sbjct: 1   LKLLRSIPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTE 60

Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 137
           +E+  + + GGN +AN+I+E+ + +   KP  D   +    FI +KYE + F+ P
Sbjct: 61  EELRLL-QKGGNENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEKLFVPP 114

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score =  131 bits (331), Expect = 1e-35
 Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 18/169 (10%)

Query: 1   MSMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCG 60
           MS ++ + +             LK L     N+ CADCGAP+P WAS N+GVF+C+ C G
Sbjct: 1   MSTKSEDRK------------LLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAG 48

Query: 61  VHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEA-FIPEGVSKPGPDSSHE 119
           VHRSLG H+SKV S+TLD+W+++E+  M EVGGNS+AN  YE   + + +          
Sbjct: 49  VHRSLGVHISKVKSLTLDNWTEEELRRM-EVGGNSNANRFYEKNLLDQLLLPIKAKYDSS 107

Query: 120 IRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSS 168
           +  K+IR KYEL++F+  S   +S    +S  +S +R  +DS      S
Sbjct: 108 VAKKYIRKKYELKKFIDDS---SSPSDFSSFSASSTRT-VDSVDDRLDS 152

Length = 319

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 91.7 bits (228), Expect = 4e-23
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSV-PQEY 238
           L+V V++  NL  +D+   SDPYV + LG +Q  +T +VK+ LNPVWNE     V   E 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
             + +EV+D D FS DD +GE EI +  LL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 89.6 bits (223), Expect = 1e-22
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 182 LKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV---QTTIVKSNLNPVWNEELMLSVPQE 237
           L+V V+   NL  +D+   SDPYV + LG Q     +T +VK+ LNPVWNE     V   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 238 YGP-VKLEVFDHDTFSADDIMGEAE 261
               +++EV+D+D F  DD +GE  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV---QTTIVKSNLNPVWNEELMLSV-P 235
            L VK++   NL  +D    SDPYV + L        +T +VK+ LNPVWNE     V P
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 236 QEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
            E   +++EV+D D F  DD +G+  I +  LL  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 77.7 bits (192), Expect = 8e-18
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV--QTTIVKSNLNPVWNEELMLSVPQE 237
            L + + +G NLA RD   +SDPYV  + G +TV    TI K NLNPVW+E+  L +   
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV 59

Query: 238 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS-----ALAFGDPEMFGNMQI 285
             P+ ++VFD+D    DD MG A +D+  L  +      L   DP    ++  
Sbjct: 60  TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGY 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 83.0 bits (204), Expect = 9e-18
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
            K L  + DN+IC DC A +P WAS   G+F+C+ C  VHRSLG H+S V S  LD WS 
Sbjct: 13  FKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSS 72

Query: 83  DEVDAMIEVGGNSSANAIYEAF 104
           +++  MI  GGN+ A   ++ +
Sbjct: 73  EQLKMMI-YGGNNRAQVFFKQY 93

Length = 395

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 10/99 (10%)

Query: 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------QTVQTTIVKSNLNPVWNEELML 232
           +L+VKV+ GI+LA +D+  +SDPYV + L          +VQT  +K  LNP WNEE   
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 233 SV-PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
            V P+E+  +  EVFD +  + DD +G+ E+ +  L T 
Sbjct: 61  RVNPREH-RLLFEVFDENRLTRDDFLGQVEVPLNNLPTE 98

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 47/160 (29%)

Query: 180 GLLKVKVVKGINLAIRDMM-------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 232
           G+L++ V++  +L  +D          SDPYV++R+G QT ++ ++K NLNP WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 233 SVPQEYG-PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291
            V +  G  +++E+FD D    DD +G   ID+              +     I +W   
Sbjct: 61  VVDEVPGQELEIELFDEDP-DKDDFLGRLSIDLG------------SVEKKGFIDEW--- 104

Query: 292 DDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331
                                  L L++V+SG L L+LEW
Sbjct: 105 -----------------------LPLEDVKSGRLHLKLEW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 75.0 bits (185), Expect = 8e-17
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 182 LKVKVVKGINLAIRDMMS--SDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQEY 238
           LKV+VV   +L + D  S  +D +V ++ G  T +T +VK +LNPVWN E     V  E 
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 239 ---GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
               P+++ V DHDT+SA+D +G+  ID+ PLL  
Sbjct: 61  LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK 95

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 180 GLLKVKVVKGINLAIRD--MMSSDPYVVL---RLGQQTVQTTIVKSNLNPVWNEE-LMLS 233
           G+L V + +  +L   D    SSDPYV     + G+    T I++ +LNPVW E   +L 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPLL 268
            P E      +   ++D D F+ADD +G  EID++ L+
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 38/159 (23%)

Query: 180 GLLKVKVVKGINLAIRDMMS---SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ 236
           G+L+V VV+  +LA +D      SDPY +L +G Q  +T  + + LNP WN      +  
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 237 EYGP-VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIG---KWLKSD 292
                +KL ++D D F+  D +GE +I ++            E+F + + G   KW+   
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALE------------EVFADGKTGQSDKWITLK 108

Query: 293 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331
                                     +V SGE+ L+  W
Sbjct: 109 ST-------------------RPGKTSVVSGEIHLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 69.9 bits (172), Expect = 7e-15
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 181 LLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV--QTTIVKSNLNPVWNE--ELMLSVP 235
           L++V VV+  NL  +D    SDPY+ ++LG++ +  +   + + LNPV+ +  EL  ++P
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 236 QEYGPVKLEVFDHDTFSADDIMGEAEIDI 264
                +K+ V D+D   +DD++GE  ID+
Sbjct: 61  GN-SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 182 LKVKVVKGINLAIRDMMS-SDPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 239
           L V V+   NL   D    SDP+V   L G++  +T  +K  LNPVWNE   + VP    
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 240 P-VKLEVFDHDTFSADDIMGEAEIDIQPL 267
             +K+EV+D D    DD++G A ID+  L
Sbjct: 61  AVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 180 GLLKVKVVKGINLA-IRDMMSSDPYVVLRLGQQTVQT-TIVKSNLNPVWNEELMLSVPQE 237
           G L V V+K  NL   R +   DPY VLR+G  T +T T  +   +P W+EEL   + ++
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 238 YGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLT 269
             P+ K+ VFD D     D++G+ E+D+ P L 
Sbjct: 61  KKPILKVAVFD-DDKRKPDLIGDTEVDLSPALK 92

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 39/159 (24%)

Query: 179 IGLLKVKVVKGINLAIRDMMSS--DPYVVLRLGQQTV--QTTIVKSNLNPVWNEELMLSV 234
           IG+L V +     L   D++    DPYV   +  +    +T + K   NPVWNE   + V
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV 60

Query: 235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 294
                P+ L V+D +    D ++G AE D+  LL                         N
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL------------------------QN 96

Query: 295 ALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333
              E+ T N++                 GEL  +L + P
Sbjct: 97  PEQENLTKNLLRN-----------GKPVGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
           G L+VKV++   LA  D+   SDP+ VL L    +QT  +   LNP WN+     +   +
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 269
             +++ V+D D     + +G+  I   PLL+
Sbjct: 61  DVLEVTVYDEDKDKKPEFLGKVAI---PLLS 88

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 180 GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQE 237
           G L+V ++    L   D +   DPYV+++   Q  ++ + K    NP WNE+   +V   
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 238 YGPV----KLEVFDHDTFSADDIMGEAEIDIQPLLT 269
                    L + D D FS DD +GEA I ++ L  
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE 96

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 48/158 (30%)

Query: 181 LLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ 236
           LL V+V++  N+   D++S  D YV L L     +  +T  +K+++NPVWNE     +  
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 237 EYGPVK----LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292
           +   VK    L V D D    DD +G    D+                  +++G+     
Sbjct: 61  Q---VKNVLELTVMDEDYVM-DDHLGTVLFDV----------------SKLKLGE----- 95

Query: 293 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE 330
                          KV+   SL  Q  E  E+E  LE
Sbjct: 96  ---------------KVRVTFSLNPQGKEELEVEFLLE 118

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 199 SSDPYVVLRL-------GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK-----LEVF 246
           SSDP+V + L          T +T + K  L P+++E    +VP E   V+       V 
Sbjct: 36  SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95

Query: 247 DHDTFSADDIMGEA 260
           D+D   ++D  GEA
Sbjct: 96  DYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)

Query: 196 DMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV-PQE--YGPVKLEVFDHDTFS 252
           DM   DP+V++  G++  +T+  +  LNPV+NE L   V P E  +  ++ +V D D FS
Sbjct: 25  DM---DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFD-IQFKVLDKDKFS 80

Query: 253 ADDIMGEAEIDIQPLLTSA 271
            +D +    + +Q LL +A
Sbjct: 81  FNDYVATGSLSVQELLNAA 99

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 235
             L V +++  +L   DM  +SDPYV + L    ++  +T + +  LNPV+NE     VP
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 236 Q-EYGPVKL--EVFDHDTFSADDIMGEAEIDI 264
             E G   L   V+D D FS  D++GE  + +
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYG 239
           L +++V+G NL  +D+  SSDPY ++++  + + +T  V   LNP W EE  + +P  + 
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 240 PVKLEVFDHDTFSADDIMGEAEI 262
            V   V D DT S DD++G+  +
Sbjct: 62  TVSFYVLDEDTLSRDDVIGKVSL 84

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYG 239
           L+  V++  +LA +D   +SDP+V +    QT++T++VK +  P WNE     + +    
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 240 PVKLEVFDHDTFSADDIMGEAEIDIQPL 267
           P+ +EV+D D  S +D +G+    IQ L
Sbjct: 62  PLSVEVWDWDLVSKNDFLGKVVFSIQTL 89

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 16/95 (16%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQE 237
           L +K++K + L  +D   +SDP+V + L       ++T + + NLNP WNE  +     E
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 73

Query: 238 YGPVK--------LEVFDHDTFSADDIMGEAEIDI 264
             P +        L+V D+D FS +D +GE  + +
Sbjct: 74  GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 176 VEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
              IG L V +V+G +L   +    SDPY  + +G Q  +T +V   LNP WN  +   V
Sbjct: 11  ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 235 PQEYGPVK-LEVFDHDTFSADDIMGEAEIDIQPLLTSA 271
                 V  + VFD D FS DD +G  EI +  +L   
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKET 108

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 200 SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV---PQEY--GPVKLEVFDHDTFSAD 254
            DP V + +G Q   T++ K    P +NE    +    P E     +K+ V+D  +  +D
Sbjct: 21  IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80

Query: 255 DIMGEAEIDI 264
            ++G  ++D+
Sbjct: 81  TLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 181 LLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV-PQEY 238
           ++ + +V+G NL   D    SDPYV  RLG +  ++ +    LNP W E+  L +   + 
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDI 264
             +++EV+D DT   D+ +G  EID+
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 55/159 (34%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 142  ASGKPSASLQSSFSRKIIDSFRSTNSSQK-KDVGMVEFIGLLKVKVVKGINLAIRDMMS- 199
            A  KPS SL    S K++     T    K   V MVE  G L + +  G NL   D    
Sbjct: 1002 AYEKPS-SLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGY 1060

Query: 200  SDPYVVLRLGQQTVQTT-IVKSNLNPVWNEELMLSVP-QEYGPVKLEVFDHDTFSADDIM 257
            SDP+V L L +++V  T +VK  LNPVWNEE  + V  +    + + V D D+   +D++
Sbjct: 1061 SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLL 1120

Query: 258  GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 296
            G AEID+     S L  G          GK     D  L
Sbjct: 1121 GTAEIDL-----SKLEPGGTTNSNIPLDGKTFIVLDGTL 1154

Length = 1227

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 180 GLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 233
             L V V+K  NL   D    SDPYV + L Q        +T++ K  LNPV+NE     
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEI 262
           VP E      + + V D D+   ++++G+  +
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 235
           G+L VK+++  NL  RD    +DPY  +RL      T Q+ I K  LNP ++E  +  VP
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 236 -QEYGPVKLEV--FDHDTFSADDIMGEAEI 262
            QE     LEV  +D D FS D+ +G  E+
Sbjct: 76  PQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTVQ---TTIVKSNLNPVWNEELMLS 233
             + V ++K  NL   D+  +SDPYV + L    + V+   T I K  LNPV+NE  + +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 234 VPQEY---GPVKLEVFDHDTFSADDIMGEA 260
           +P E      + + V D D  S +D++G+ 
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIGKI 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTVQ-TTIVKSNLNPVWNEELMLS 233
             L V+V +  NL   D    SDPYV L+L      +T Q T  +K  LNPVWNE     
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 234 VPQEYGPVKL--EVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 290
           +       +L  EV+D D  + +D MG            +L+FG  E+   M +  W K
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMG------------SLSFGVSELI-KMPVDGWYK 118

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTV---QTTIVKSNLNPVWNEELMLSVP 235
           L V V+K  +L   D+   +DPYV + L  G++ +   +T + K  LNPV+NE  +  +P
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 236 QEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW 288
            E      V+  V D D  + ++++G   +  +   +    + +       QI +W
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEW 132

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 180 GLLKVKVVKGINLAIRDM--MSSDPYVVLRL----GQQTVQTTIVKSN-LNPVWNEELML 232
           G L+V + +  NLA  D     S+PYV + L     +Q+ + T VK N  NPV+NE L  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 233 SVPQ---EYGPVKLEVFDHDTFSADDIMGEAEIDIQ 265
            + +   E   ++L V+ HD F  +  +GE EI + 
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP 240
           + + VV    L  +D   +SDPYV +++G+   +T  +  NLNPVWNE+           
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 241 VKLEVFDHD-----------TFSADDIMGEAEIDIQPL 267
           +K+ V+D D           T  +DD +G+  I+++ L
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 22/100 (22%)

Query: 182 LKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLSVP 235
           L V V++  +L  RD  S  +PYV + L          +T  VK  LNP WN+       
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTF----- 72

Query: 236 QEYGPVKLE----------VFDHDTFSADDIMGEAEIDIQ 265
            EY  V+ E          V+D+D    +D +GE  ID+ 
Sbjct: 73  -EYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 184 VKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK 242
           V V     L+ +D    +DPYV+++   ++V++ + K  L+P ++ + +    +   P+K
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 243 LEVFDHDTFSADDIMGEAEIDIQP 266
           ++V++ +    D+ +G+A +   P
Sbjct: 67  IQVWNSNLLC-DEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 201 DPYV-VLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259
           DPYV V   GQ   +T + K   NP WNE   + V      ++ +V+ H T  AD ++GE
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV-TPQSTLEFKVWSHHTLKADVLLGE 81

Query: 260 AEIDIQPLL 268
           A +D+  +L
Sbjct: 82  ASLDLSDIL 90

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 201 DPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP-----VKLEVFDHDTFSADD 255
           DPYV +    Q V+T++ K++ NP WNE+++     E  P     +K+++ D D    DD
Sbjct: 36  DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVF---PEMFPPLCERIKIQIRDWDRVGNDD 92

Query: 256 IMGEAEIDIQ 265
           ++G   ID+ 
Sbjct: 93  VIGTHFIDLS 102

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 187 VKGINLAIRDMMS-SDPYVVL-RL---GQQTV--QTTIVKSNLNPVWNEELMLSVPQEYG 239
             G  L  +D    SDP++ + R    G   +  +T ++K+ LNPVW     + + +   
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65

Query: 240 -----PVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
                P+K+EV+D+D+    D++GE E  +  LL S
Sbjct: 66  GDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 179 IGLLKVKVVKGINLAIRDMM---SSDPYVVLRLGQQTVQTTIVKSN-LNPVWNEELMLSV 234
           IG+++VK+     L   D     + DPY+ +    + +  T VK N LNPVWNE   + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
                P+ L ++D ++F +D ++G  ++D+  L 
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLH 528

Length = 1227

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 200 SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELM---LSVP------QEYGP-VKLEVFDHD 249
           SDP+  +    Q+ +T ++K  L+P W++ L+   + +        +  P V +E+FD D
Sbjct: 22  SDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81

Query: 250 TFSADDIMG 258
           +   D+ +G
Sbjct: 82  SVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 182 LKVKVVKGINLAIRD--MMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV 234
           L V V++  +LA  D     SDPYV   L      +   +T++ K  LNPV+NE L   V
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76

Query: 235 PQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
            +E  P +   L V+  D+   +  +GE E+D+
Sbjct: 77  EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 200 SDPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258
            DPYV + + G    +T  + + LNPVW+E L + V      + LEV D++    D  +G
Sbjct: 22  IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81

Query: 259 EAEIDIQPLL 268
             EI++  L+
Sbjct: 82  SVEINVSDLI 91

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEEL-----MLSVPQ 236
           L V V++   L      S+D YV +  G Q  +T ++ +N NP WN         LS   
Sbjct: 30  LTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--- 86

Query: 237 EYGPVKLEVFDHDTFSADDIMGEAEI 262
             G ++ EV+D D    DD++G   +
Sbjct: 87  PGGKLRFEVWDRDNGWDDDLLGTCSV 112

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL---GQ--QTVQTTIVKSNLNPVWNEELMLS 233
           G L + ++K  NL   D+   SDPYV + L   G+  +  +T++ K+ LNP +NE L+  
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 234 VPQE-YGPVKL--EVFDHDTFSADDIMG 258
           VP E    V L   V D+D    ++++G
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           NR C +C +  P++   N   FIC+ C G+HR   TH  +V SV++  ++  +V+A+ + 
Sbjct: 23  NRRCINCNSLGPQFVCTNFWTFICMTCSGIHREF-TH--RVKSVSMSKFTSQDVEAL-QN 78

Query: 92  GGNSSANAIY 101
           GGN  A  IY
Sbjct: 79  GGNQRAREIY 88

Length = 705

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVP---QEY 238
           L++++++  NL  +     DPY  + L Q  V  T     LNP W EE +   P     +
Sbjct: 2   LRLRILEAKNLPSKGT--RDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVFDDPPPDVTF 59

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPL 267
             +     D  +   D ++G+  +    L
Sbjct: 60  FTLSFYNKDKRSKDRDIVIGKVALSKLDL 88

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 9/72 (12%)

Query: 182 LKVKVVKGINLAIRDMMSS-DPYVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 239
           +++ V+    LA RD+    DP+ V+ + G QT  T + K  L+P WNE   L+V    G
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTV----G 57

Query: 240 P---VKLEVFDH 248
           P   + ++VFD 
Sbjct: 58  PSSIITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 21/97 (21%)

Query: 191 NLAIRDMMS-SDPYVVLRLGQQTV-------QTTIVKSNLNPVWNEELMLSVPQEYG--- 239
           NL  +D++S SDP+VV+ +            +T ++K+NLNP +      +   +Y    
Sbjct: 11  NLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVT----TFTVDYYFEE 66

Query: 240 --PVKLEVFDHDTFSAD----DIMGEAEIDIQPLLTS 270
              ++ EV+D D+ S D    D +GEAE  +  +++S
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---- 236
           L V+VV   +L  +D   SS  YV L    Q  +T     +LNPVWNE+L+ +V      
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 237 EYGPVKLEVFDHDTFS 252
               +++ V+ +D  S
Sbjct: 62  SNLVLEVYVY-NDRRS 76

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 199 SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH 248
           S+D Y V + G + V+T  V+ + NP WNE+    V      + + VFD+
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 9/136 (6%)

Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           NR C +C +  P++       F+C+ C G+HR   TH  +V SV++  ++  EV+ +++ 
Sbjct: 23  NRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-TH--RVKSVSMSKFTSKEVE-VLQN 78

Query: 92  GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQ 151
           GGN  A  IY         +   +S+ E   +FI++ Y  +++   +    + KPS   Q
Sbjct: 79  GGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGAN---DADKPSKDSQ 135

Query: 152 SSFSRKIIDSFRSTNS 167
              S +  D  R  NS
Sbjct: 136 DHVSSE--DMTRRANS 149

Length = 648

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL----GQQTVQTTIVK-SNLNPVWNEELMLS 233
             L V +++ +NLA  D    SDP+V L L    G+++   T VK   LNP +NEE    
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 234 VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDIQ 265
           +       K   + V+D D   ++D +G  ++ I 
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 184 VKVVKGINL-AIRDMMSSDPYVVL---RLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 239
           +++V+  NL A      SDPYV L      ++  +T  +   LNP W+EE  L VP    
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-E 63

Query: 240 PVKLE--VFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 276
           P+ +   V+D       D+ G A + + P       FGD
Sbjct: 64  PLWISATVWDRSFVGKHDLCGRASLKLDPKR-----FGD 97

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 182 LKVKVVKGINLAIR--DMMSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ 236
           L V ++K  NL  R  D+   DP+V + L    ++++Q+ + +   NP ++E  +  V  
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 237 EYGP---VKLEVFDHDTFSADDIMGEA 260
           +      ++L V+D D FS   I+G  
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHV 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 28/111 (25%)

Query: 174 GMVEFIGL-------LKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKS 220
           G +EF  L       L   +++   L   D    SDPYV L L         ++T  V  
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 221 NLNPVWNEELMLSVPQEYG---------PVKLEVFDHDTFSADDIMGEAEI 262
             NP +NE L       YG          ++L V D D F  +D +GE  I
Sbjct: 62  TRNPEFNETL-----TYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-----VQTTIVKSNLNPVWNEELMLS 233
           G L V +++  NL   D+   SDPYV + L Q        +TTI K  LNP +NE     
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 234 VPQEY---GPVKLEVFDHDTFSADDIMGE 259
           VP E      + + V D+D    +D +G+
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIGK 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQT-TIVKSNLNPVWNEELMLSVPQE 237
           I +++ K+VK  N  +  M   DPY  +R+G    +T T      NP WN+ +  ++P+ 
Sbjct: 6   ITVVQAKLVK--NYGLTRM---DPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG 60

Query: 238 YGPVKLEVFDHDTFSADDIMGEAEIDIQP 266
              + +E+FD   F+ D+ +    I I  
Sbjct: 61  VDSIYIEIFDERAFTMDERIAWTHITIPE 89

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 23/74 (31%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 195 RDMMSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA 253
           R +++SDPYV + + Q T+ +T ++K++  P+W+E+  +S+   +  ++ +V D D F A
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA 131

Query: 254 DDIMGEAEIDIQPL 267
             I+G A+I ++ +
Sbjct: 132 -QIIGTAKIPVRDI 144

Length = 868

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 180 GLLKVKVVKGINLAIRD--MMSSDPYVVLRL----GQQTVQTTIVKSN-LNPVWNEELML 232
             L V V +  NLA  D     S+PYV   L     +Q+ + T +K N  NPV+NE L  
Sbjct: 15  QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74

Query: 233 SVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI 262
           S+     E   ++L V+ +D F  +  +GE EI
Sbjct: 75  SISHSQLETRTLQLSVWHYDRFGRNTFLGEVEI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 198 MSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 256
           ++SDPY  + L    V +T +++++ NPVWNE   +        V+  V D+D   A  I
Sbjct: 56  ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLI 115

Query: 257 MGEAEIDIQPLLT 269
            G A I ++ LL+
Sbjct: 116 -GRAYIPVEDLLS 127

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL--GQQ---TVQTTIVKSNLNPVWNEELMLS 233
           G L V +++   L   DM   SDP+V ++L  G +   T +T+ ++  ++P +NE     
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 234 VPQEY---GPVKLEVFDHDTFSADDIMGE 259
           VPQE      +   V+ H+  S++D +G 
Sbjct: 74  VPQEELENVSLVFTVYGHNVKSSNDFIGR 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 199 SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFS 252
           ++D YV+++LG++   T++ +   +PVW EE    +P           ++L V   +   
Sbjct: 19  TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78

Query: 253 ADDIMGEAEIDI 264
            D  +G+  I +
Sbjct: 79  LDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 182 LKVKVVKGINLAIRD--MMSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEEL-MLSVP 235
           L V +++  +L   D    +SDPYV L+L    +  V+T +++   NPV++E      +P
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 236 QEYGP---VKLEVFDHDTFSADDIMGEA 260
                   +   V   D +S DD++GE 
Sbjct: 78  YNQLQDLSLHFAVLSFDRYSRDDVIGEV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 185 KVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGP 240
            +VK I          SS+PY VL + +  Q  Q++  K+  NP W+E  +  +      
Sbjct: 1   LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKE 60

Query: 241 VKLEVFDHDTFSADDIMGEAEI 262
           +  EV+D+   S    +G A +
Sbjct: 61  LLFEVYDNGKKSDSKFLGLAIV 82

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)

Query: 182 LKVKVVKGINLAIRDMMSSDP------YVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSV 234
           L+V V++      +D++ SD       +V  +LG Q ++T   ++ N NP WNEELM   
Sbjct: 2   LRVTVIEA-----QDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVA 56

Query: 235 --PQEYGPVKLEVFDHDTFSADDIMGEAEI 262
             P E   + L V D    + D+ +G A I
Sbjct: 57  AEPFE-DHLILSVEDRVGPNKDEPLGRAVI 85

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 20/106 (18%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE 237
           L V+V++  +LA++   + DP+  + L       T +T + K   NP ++E     +   
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 238 YGP----------------VKLEVFDHDTFSADDIMGEAEIDIQPL 267
           +                  +++E++     S DD +GE  I +Q L
Sbjct: 61  FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPV 241
           L V+VVK   L      S+DP V ++LG     T  ++   NP WN+    S  +  G  
Sbjct: 2   LYVRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGST 58

Query: 242 KLEVFDHD-TFSADDIMGEAEIDIQ 265
            LEV   D   + DD +G    D+ 
Sbjct: 59  -LEVSVWDKDKAKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 182 LKVKVVKGINL---AIRDMMSSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 233
           L V V+K  NL    ++ ++  D  V + L  Q       QT   K  +NPVWNE +M  
Sbjct: 17  LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE 76

Query: 234 VPQEY---GPVKLEVFDHDTFSADDIMGEAEIDIQ 265
           +P E      V+LEV + D+      +G   + + 
Sbjct: 77  LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLH 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 184 VKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIV--KSNLNPVWNEELMLSVP-----Q 236
           +K V         M     Y V+ +     Q+T V      NP WNE L   +      Q
Sbjct: 12  LKNVNLF----GKM---KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQ 64

Query: 237 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
               + +EV+       D ++GE  + ++ LL
Sbjct: 65  GRLALTIEVYCERPSLGDKLIGEVRVPLKDLL 96

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 178 FIGLLKVKVVKGINL-----AIRDMMSS------DPYVVLRLGQQTV-QTTIVKSNLNPV 225
           F G LK+K+ + ++L     + R  +        DPYV + +    + +T+      +PV
Sbjct: 2   FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPV 61

Query: 226 WNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
           WNEE    V      ++L VF       DD +    I  + L+  
Sbjct: 62  WNEEFTTEV-HNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQR 105

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 84  EVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIAS 143
           + + ++    NSS       F      K        +     R+      F   +     
Sbjct: 629 QYNVLVTDRKNSSIK--VVTF-DVQSGKVIATEGSTLPDLIDRTLDTFLVFPLRN----- 680

Query: 144 GKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMS---S 200
             P   +  +   K I +   ++S    D      IG ++V V K  +L  R+ +    S
Sbjct: 681 --PKGRIFITNYWKPIYNAGGSSSKTVYD----TPIGAIRVSVRKANDL--RNEIPGGKS 732

Query: 201 DPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259
           DPY  + +       TI   S LNP+WNE L + V  +   + LE  D++    D  +GE
Sbjct: 733 DPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGE 792

Query: 260 AEIDIQ 265
             I++ 
Sbjct: 793 VNINVS 798

Length = 1227

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 182 LKVKVVKGINLAIRDMMSS--DPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEY 238
           LK+K+ +  NL  R   +   D Y  + L Q+ V +T  V+ +L P + E+    +P+ +
Sbjct: 2   LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF 61

Query: 239 GPVKLEVFDHDTFSADDIMGEAEI 262
             +   ++D D    D ++G+  I
Sbjct: 62  RHLSFYIYDRDVLRRDSVIGKVAI 85

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 182 LKVKVVKGINLAIRDMMSS---DPYVVLRL------GQQTVQTTIVKSN-LNPVWNEELM 231
           L +K++ G  L           DPYV + +           +T +VK+N  NPVWNE   
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 232 LSVPQEYGP----VKLEVFDHDTFSADDI 256
             V     P    ++  V+D D+   D +
Sbjct: 64  FDV---TVPELAFLRFVVYDEDSGDDDFL 89

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 201 DPYVVLRLGQQTVQTTIVKSNLNPVWNEE-LMLSVPQEYGPVKLEVFDHDT 250
            PYV L +G+ T ++ + +   NPVW E    L    E   +++EV D  T
Sbjct: 22  SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 180 GLLKVKVVKGINL-AIRDMMSSDPYV---VLRLGQQTV--QTTIVKSNLNPVWNEELMLS 233
           G L V V +  NL A++   +SD +V   +L    +    +T +VK ++NPVWN   +  
Sbjct: 27  GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86

Query: 234 --VPQEYGPVKLE--VFDHDTFSADDIMG 258
              P++     LE  V+DHD  S++D +G
Sbjct: 87  GVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 191 NLAIRDMMSSDPYVVLRL----GQQTVQTT-IVKSNLNPVWNEEL---MLSVPQEYGPV- 241
           NL + D    DPYV   L     + T + T +V+   NP +NE L    L V      V 
Sbjct: 24  NLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVL 83

Query: 242 KLEVFDHDTFSADDIMGEAEID 263
           ++ V+ HD+   ++ +G   I 
Sbjct: 84  QVSVWSHDSLVENEFLGGVCIP 105

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 164 STNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVV-LRLGQQTVQTTIVKSNL 222
           S+ S  ++ V   +F G+  + +V        +M   D ++  +  G+QT +T    S  
Sbjct: 38  SSGSVSQRAVSAEDFSGIALLTLVG------AEMKFKDKWLACVSFGEQTFRTETSDSTD 91

Query: 223 NPVWNEELMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
            PVWN E  L + +    + ++ VF+ +  S + ++G  E+D+   +T 
Sbjct: 92  KPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ 140

Length = 644

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 215 TTIVKSNLNPVWNEELMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQ 265
           T +    LNPVWNE     V         L+++DHD    DD +G   I ++
Sbjct: 93  TEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLR-LGQQTV----QTTIVKSNLNPVWNEELMLSVP 235
           L V V K  NL   D     DPYV L  L  ++     +T++ K NLNPV++E     V 
Sbjct: 18  LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 236 QEYGPVK-LEVF---DHDTFSAD-DIMGEAEIDIQPLLTS 270
            E    + L+V         S +  ++G+  ID+  L  S
Sbjct: 78  LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS 117

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
KOG0703	287	consensus Predicted GTPase-activating protein [Sig	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	100.0
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	100.0
PLN03131	705	hypothetical protein; Provisional	100.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.97
KOG0704	386	consensus ADP-ribosylation factor GTPase activator	99.97
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.96
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.96
KOG0706	454	consensus Predicted GTPase-activating protein [Sig	99.96
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.94
KOG0521	785	consensus Putative GTPase activating proteins (GAP	99.91
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.86
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.83
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.82
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.81
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.8
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.8
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.79
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.79
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.79
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.78
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.78
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.78
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.78
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.77
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.77
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.77
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.77
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.77
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.76
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.76
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.75
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.74
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.74
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.74
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.73
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.73
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.73
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.73
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.73
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.73
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.72
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.72
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.72
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.71
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.7
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.7
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.7
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.7
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.7
KOG0702	524	consensus Predicted GTPase-activating protein [Sig	99.7
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.69
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.68
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.68
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.67
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.67
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.67
PLN03008	868	Phospholipase D delta	99.67
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.66
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.66
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.65
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.65
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.65
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.65
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.64
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.64
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.64
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.64
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.63
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.63
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.62
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.62
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.61
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.61
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.6
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.59
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.56
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.56
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.56
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.56
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.55
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.54
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.52
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.49
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.46
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.45
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.4
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.3
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.3
PLN02270	808	phospholipase D alpha	99.29
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
PLN02223	537	phosphoinositide phospholipase C	99.18
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.17
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.16
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.15
PLN02952	599	phosphoinositide phospholipase C	99.11
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.08
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.97
PLN02230	598	phosphoinositide phospholipase C 4	98.96
PLN02222	581	phosphoinositide phospholipase C 2	98.92
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.89
PLN02228	567	Phosphoinositide phospholipase C	98.85
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.81
PLN02352	758	phospholipase D epsilon	98.77
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.74
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.67
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.4
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.37
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.27
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.15
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.14
PLN02964	644	phosphatidylserine decarboxylase	98.13
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.9
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.72
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.6
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.57
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.17
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.07
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.03
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.67
KOG1452	442	consensus Predicted Rho GTPase-activating protein	95.75
PF15627	156	CEP76-C2: CEP76 C2 domain	95.72
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.41
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.33
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.24
KOG0521	785	consensus Putative GTPase activating proteins (GAP	94.91
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.88
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.69
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	94.37
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.71
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	92.42
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.13
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.02
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	91.8
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	89.72
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	89.22
KOG1327	529	consensus Copine [Signal transduction mechanisms]	88.99
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	88.88
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.73
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	84.73
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	82.88
PRK12495	226	hypothetical protein; Provisional	82.09
PF11781	36	RRN7: RNA polymerase I-specific transcription init	82.06
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	81.21

>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-46  Score=333.47  Aligned_cols=119  Identities=56%  Similarity=1.093  Sum_probs=114.6

Q ss_pred             CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019768           16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS   95 (336)
Q Consensus        16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~   95 (336)
                      .++++++|++||+.|+|+.|||||+++|+|||+|+|||||++||||||+||+||||||||+||.|++|+|+.|+.+ ||.
T Consensus         9 ~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-GN~   87 (287)
T KOG0703|consen    9 NERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-GNA   87 (287)
T ss_pred             cchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-cch
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999998 699


Q ss_pred             ccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768           96 SANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus        96 ~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      +||++||+++|..+.+|.+++   .+++|||+|||+++|+.+.
T Consensus        88 ~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen   88 KANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             hhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccch
Confidence            999999999999999998875   8999999999999999986

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=2.5e-41  Score=270.49  Aligned_cols=114  Identities=52%  Similarity=0.994  Sum_probs=96.0

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchh
Q 019768           21 GRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAI  100 (336)
Q Consensus        21 ~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~  100 (336)
                      ++|++|++.|+|+.|||||+++|+|||++||||||+.|||+||+||+|+|+||||+||+|+++||+.|+. |||..+|++
T Consensus         2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~   80 (116)
T PF01412_consen    2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSI   80 (116)
T ss_dssp             HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHH
T ss_pred             HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHH
Confidence            6799999999999999999999999999999999999999999999999999999999999999999976 599999999


Q ss_pred             hhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecC
Q 019768          101 YEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLK  136 (336)
Q Consensus       101 ~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~  136 (336)
                      ||++ ++...+|.++++.+.+++||++||++++|+.
T Consensus        81 ~e~~-~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~  115 (116)
T PF01412_consen   81 WEAN-SPPPKKPPPSSDQEKREQFIRAKYVEKAFIS  115 (116)
T ss_dssp             HTTT-STTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred             HHcC-CCCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence            9999 4334677778888899999999999999975

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=1.3e-39  Score=258.83  Aligned_cols=108  Identities=45%  Similarity=0.910  Sum_probs=100.1

Q ss_pred             CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhccCCCC
Q 019768           30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGV  109 (336)
Q Consensus        30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~~~~~~  109 (336)
                      |+|+.||||++++|+|||+|+|||||+.|||+||.||+|||+||||+||+|++++|+.|+ .|||.++|++||+++|+..
T Consensus         1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~-~~GN~~~n~~~e~~~~~~~   79 (112)
T smart00105        1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQ-KGGNENANSIWESNLDDFS   79 (112)
T ss_pred             CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHH-HhhhHHHHHHHHhhCCccc
Confidence            689999999999999999999999999999999999999999999999999999999997 4799999999999999875


Q ss_pred             CCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768          110 SKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus       110 ~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      .+|.+.+....+++||+.||++++|+.+.
T Consensus        80 ~~~~~~~~~~~~~~fI~~KY~~k~f~~~~  108 (112)
T smart00105       80 LKPPDSDDQQKYESFIAAKYEEKLFVPPE  108 (112)
T ss_pred             cCCCCCchHHHHHHHHHHHHHhhhccccc
Confidence            55655556789999999999999998764

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.3e-36  Score=276.40  Aligned_cols=118  Identities=47%  Similarity=0.878  Sum_probs=106.1

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768           19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN   98 (336)
Q Consensus        19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n   98 (336)
                      .++.+..|...++|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+||+|+++||++|.. |||.+||
T Consensus         7 ~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a~   85 (319)
T COG5347           7 DRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNAN   85 (319)
T ss_pred             HHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhhh
Confidence            577788888899999999999999999999999999999999999999999999999999999999999975 8999999


Q ss_pred             hhhhhccCCCC-CCCCCCCCHHHHHHHHHhhhccceecCC
Q 019768           99 AIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP  137 (336)
Q Consensus        99 ~~~e~~~~~~~-~~p~~~~~~~~r~~fI~~KY~~k~~~~~  137 (336)
                      .|||.+.-... .+.....+...+++||+.||+.+.|...
T Consensus        86 ~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~  125 (319)
T COG5347          86 RFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD  125 (319)
T ss_pred             hHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence            99999865432 2344566677889999999999999875

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=100.00  E-value=5.1e-36  Score=284.65  Aligned_cols=123  Identities=24%  Similarity=0.508  Sum_probs=110.8

Q ss_pred             CCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHh
Q 019768           12 ELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV   91 (336)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~   91 (336)
                      +++++|+++++|++|++.|+|+.||||++.+|+|||+|||||||+.||||||.|| |  |||||+||+|+++||+.|+. 
T Consensus         3 SKR~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG-h--RVKSLSLDkWT~EEVe~Mk~-   78 (648)
T PLN03119          3 SKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT-H--RVKSVSMSKFTSKEVEVLQN-   78 (648)
T ss_pred             chHHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC-c--eeeccccCCCCHHHHHHHHH-
Confidence            4556789999999999999999999999999999999999999999999999998 4  99999999999999999976 


Q ss_pred             ccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768           92 GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus        92 ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      |||.+||++||++++....++.+.++.+.+++|||+||++|+|+...
T Consensus        79 gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~  125 (648)
T PLN03119         79 GGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGAN  125 (648)
T ss_pred             hchHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcC
Confidence            69999999999999876444444555667789999999999999765

>PLN03131 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=283.98  Aligned_cols=123  Identities=24%  Similarity=0.499  Sum_probs=110.6

Q ss_pred             CCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHh
Q 019768           12 ELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV   91 (336)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~   91 (336)
                      +++++|+++++|++|++.|+|+.||||++++|+|||+|||||||+.||||||.|| |  |||||+||+|+++||+.|+. 
T Consensus         3 SkkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD~WtdeEV~~Mk~-   78 (705)
T PLN03131          3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMSKFTSQDVEALQN-   78 (705)
T ss_pred             chHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCCCCCHHHHHHHHH-
Confidence            4556788999999999999999999999999999999999999999999999997 4  99999999999999999975 


Q ss_pred             ccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768           92 GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus        92 ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      |||.+||++||++++....++.+++..+.++.|||+||++|+|+.+.
T Consensus        79 gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~  125 (705)
T PLN03131         79 GGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGK  125 (705)
T ss_pred             hccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCC
Confidence            79999999999999876444444556677899999999999999765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=254.68  Aligned_cols=118  Identities=46%  Similarity=0.894  Sum_probs=111.4

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768           19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN   98 (336)
Q Consensus        19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n   98 (336)
                      ..-.|+.|...+||..|+||++++|.|||+|+|+.+|+.|+||||.||+|+|+|||+.||.|..|-+..|..+ ||+.||
T Consensus       500 ea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN  578 (749)
T KOG0705|consen  500 EAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLAN  578 (749)
T ss_pred             hHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999988 899999


Q ss_pred             hhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768           99 AIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus        99 ~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      ++||... .+..||.++++.+++|+||++||++|.|..|-
T Consensus       579 ~vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLaPl  617 (749)
T KOG0705|consen  579 SVWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLAPL  617 (749)
T ss_pred             HHhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcCCC
Confidence            9999844 45589999999999999999999999999885

>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.97  E-value=1.7e-31  Score=240.23  Aligned_cols=87  Identities=41%  Similarity=0.830  Sum_probs=79.8

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019768           17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS   96 (336)
Q Consensus        17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~   96 (336)
                      .+.++.|+++....+|+.|+||++++|+|||++||||||++|||+||+||+|||+|||||||+|.+.||+.|. .|||.+
T Consensus         4 prtrr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMe-aGGN~~   82 (386)
T KOG0704|consen    4 PRTRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKME-AGGNER   82 (386)
T ss_pred             hHHHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHH-hccchh
Confidence            3456777777666699999999999999999999999999999999999999999999999999999999995 599999


Q ss_pred             cchhhhhc
Q 019768           97 ANAIYEAF  104 (336)
Q Consensus        97 ~n~~~e~~  104 (336)
                      ++.+++..
T Consensus        83 ~~eFL~s~   90 (386)
T KOG0704|consen   83 FREFLSSQ   90 (386)
T ss_pred             HHHHHhhC
Confidence            99999865

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.96  E-value=2.4e-30  Score=234.44  Aligned_cols=116  Identities=36%  Similarity=0.606  Sum_probs=96.6

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768           19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN   98 (336)
Q Consensus        19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n   98 (336)
                      ..+.|++|+.+|+|+.|||||+++|+|||+|||||||+.|+|+||+||+|||+|||++||.|++++|+.|. .|||.+||
T Consensus         9 ~~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk-~GGN~rA~   87 (395)
T PLN03114          9 KISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI-YGGNNRAQ   87 (395)
T ss_pred             HHHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHH-HhcCHHHH
Confidence            46779999999999999999999999999999999999999999999999999999999999999999996 58999999


Q ss_pred             hhhhhccCCCCCCCC--CCCCHHHHHHHHHhhhccceec
Q 019768           99 AIYEAFIPEGVSKPG--PDSSHEIRSKFIRSKYELQEFL  135 (336)
Q Consensus        99 ~~~e~~~~~~~~~p~--~~~~~~~r~~fI~~KY~~k~~~  135 (336)
                      .||+.+--.....+.  -++....+.+-+.++++.+.+.
T Consensus        88 ~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a  126 (395)
T PLN03114         88 VFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKA  126 (395)
T ss_pred             HHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Confidence            999875322111221  2334445555677888877666

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.96  E-value=1e-29  Score=209.69  Aligned_cols=162  Identities=51%  Similarity=0.764  Sum_probs=152.9

Q ss_pred             eeEEEEEEEEEEEeeeecccCCC-CCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA  253 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~-~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~  253 (336)
                      |..+.|.|.|.|++|.+|..+|+ .++||||++.+++++.+|+++.+++||+|||.|.|.+.+....|+++|||+|.++.
T Consensus         1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS   80 (168)
T ss_pred             CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence            35688999999999999999999 59999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEeCcccccccccCC-CCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          254 DDIMGEAEIDIQPLLTSALAFG-DPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       254 dd~iG~~~i~l~~l~~~~~~~~-~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                      ||++|.++|+|..++...+... ...++++..+.+|++..++++..++.+.+.+|++.+++.+++++.+.|+++++++|+
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~  160 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI  160 (168)
T ss_pred             ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence            9999999999999998766664 457888999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC
Q 019768          333 PLDQ  336 (336)
Q Consensus       333 ~~~~  336 (336)
                      +.++
T Consensus       161 ~~~~  164 (168)
T KOG1030|consen  161 KLPG  164 (168)
T ss_pred             cCcc
Confidence            9875

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-30  Score=239.73  Aligned_cols=87  Identities=41%  Similarity=0.830  Sum_probs=82.8

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccccc
Q 019768           18 SGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSA   97 (336)
Q Consensus        18 ~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~   97 (336)
                      ..+..++.|..+++|+.||||||++|+|+|++||||||+.||++||.||+|||+|||..||+|+.+|++.|+ +|||.+|
T Consensus         9 d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M~-~GGN~nA   87 (454)
T KOG0706|consen    9 DIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRMQ-VGGNANA   87 (454)
T ss_pred             hHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHhh-hcCchhH
Confidence            367889999999999999999999999999999999999999999999999999999999999999999995 7999999


Q ss_pred             chhhhhcc
Q 019768           98 NAIYEAFI  105 (336)
Q Consensus        98 n~~~e~~~  105 (336)
                      +.++.++-
T Consensus        88 ~~FFkqhg   95 (454)
T KOG0706|consen   88 RVFFKQHG   95 (454)
T ss_pred             HHHHHHcC
Confidence            99998763

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.94  E-value=1.1e-25  Score=187.09  Aligned_cols=145  Identities=59%  Similarity=0.870  Sum_probs=134.4

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      .|.|+|+|++|++|+..+...+||||++.++++.++|++++++.||+|||.|.|.+......|.|+|||++.++.|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            38899999999999988777889999999999999999999999999999999999887788999999999999999999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccc
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  323 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G  323 (336)
                      .+.+++.++...........+.++..+.+|+|..++++.+++.+.+.+||+.+++.|+|+++++|
T Consensus        81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g  145 (145)
T cd04038          81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG  145 (145)
T ss_pred             EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence            99999999987766554456788999999999999999999999999999999999999999887

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-25  Score=226.96  Aligned_cols=117  Identities=43%  Similarity=0.793  Sum_probs=108.7

Q ss_pred             HHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhh
Q 019768           22 RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIY  101 (336)
Q Consensus        22 ~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~  101 (336)
                      .+..+...|+|..|+|||++.|+|+|+|+||.+||.|+|+||+||+|+|||+|++||.|.++.+..|..+ ||..+|.+|
T Consensus       416 ~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~  494 (785)
T KOG0521|consen  416 VIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIY  494 (785)
T ss_pred             hhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-Ccchhhhhh
Confidence            4778888999999999999999999999999999999999999999999999999999999999999876 899999999


Q ss_pred             hhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019768          102 EAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSL  139 (336)
Q Consensus       102 e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~  139 (336)
                      |+.+++. ..+|.+.++...|+.||++||+++.|.....
T Consensus       495 e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~  533 (785)
T KOG0521|consen  495 EALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEP  533 (785)
T ss_pred             hcccccccccCCCCccchhhhhHhhhcccceeeEeeccc
Confidence            9999864 6788888888899999999999999986543

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=2e-22  Score=162.37  Aligned_cols=118  Identities=21%  Similarity=0.465  Sum_probs=99.9

Q ss_pred             EEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      |.|.|+|++|++|+..+.+++||||++.+++++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG   81 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA   81 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence            78999999999998877559999999999999999999876 89999999999999775578999999999999999999


Q ss_pred             EEEEeCcc-cccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          259 EAEIDIQP-LLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       259 ~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      .+.++|.. +.            .+...+.||+|....                      .....|+|+|+|.|
T Consensus        82 ~~~i~l~~~~~------------~g~~~~~W~~L~~~~----------------------~~~~~g~i~l~l~y  121 (121)
T cd04016          82 WTHITIPESVF------------NGETLDDWYSLSGKQ----------------------GEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEECchhcc------------CCCCccccEeCcCcc----------------------CCCCceEEEEEEeC
Confidence            99999964 43            234478899864411                      11367999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.86  E-value=1e-22  Score=190.82  Aligned_cols=111  Identities=38%  Similarity=0.795  Sum_probs=97.3

Q ss_pred             CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhccCC-
Q 019768           29 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-  107 (336)
Q Consensus        29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~~~~-  107 (336)
                      ...-+.|+|||+++|.|||+|-|+|+|..|..+||+||.|||.||++.-..|.++.+++...+ .|..||.+||+.+-+ 
T Consensus         5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld~   83 (669)
T KOG0818|consen    5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLDP   83 (669)
T ss_pred             chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccCc
Confidence            456689999999999999999999999999999999999999999999999999999977665 788999999998743 


Q ss_pred             -----CCCCCCCCCC-HHHHHHHHHhhhccceecC-Cccc
Q 019768          108 -----GVSKPGPDSS-HEIRSKFIRSKYELQEFLK-PSLR  140 (336)
Q Consensus       108 -----~~~~p~~~~~-~~~r~~fI~~KY~~k~~~~-~~~~  140 (336)
                           +++||.|.+. +..+++||++||+.-.|+. ++.+
T Consensus        84 st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~r  123 (669)
T KOG0818|consen   84 ATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCR  123 (669)
T ss_pred             hhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCC
Confidence                 4678988554 5589999999999999986 4433

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.85  E-value=7.9e-22  Score=194.44  Aligned_cols=123  Identities=38%  Similarity=0.684  Sum_probs=110.7

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC--CCHHHHHHHHHhccccccc
Q 019768           21 GRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSAN   98 (336)
Q Consensus        21 ~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~--~~~~~~~~~~~~ggN~~~n   98 (336)
                      +.-.++.....|+.|||||++.|.|||+|+++.||-.|+|-||+||.-+|+|+|++||.  |+.+-++++..+ ||.++|
T Consensus       287 evaeriW~ne~nr~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~an  365 (1186)
T KOG1117|consen  287 EVAERIWLNEENRECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPRAN  365 (1186)
T ss_pred             HHHHHHHhccccccccccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcccc
Confidence            34456778899999999999999999999999999999999999999999999999996  999999999877 899999


Q ss_pred             hhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccccCCC
Q 019768           99 AIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK  145 (336)
Q Consensus        99 ~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~~s~~  145 (336)
                      ++|.+++|++ ..-.++++...|++||.+||....|..+.+.....+
T Consensus       366 ~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~~~~~~~s  411 (1186)
T KOG1117|consen  366 RFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEHPVEICSS  411 (1186)
T ss_pred             cccccCCCCc-cccCCCCCcchhhhHHHHHhhccccccccccccccc
Confidence            9999999987 567889999999999999999999987765444433

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.1e-20  Score=153.88  Aligned_cols=102  Identities=23%  Similarity=0.518  Sum_probs=88.7

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC------CCCceEEEEEecCCCCCC
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFSAD  254 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~------~~~~L~v~V~d~~~~~~d  254 (336)
                      |+|+|++|++|+..+.. .+||||++.+++.+++|+++++++||+|||.|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999988876 89999999999999999999999999999999999866      356799999999999899


Q ss_pred             CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++||++.++|.++...          .+.....||+|.+
T Consensus        81 ~~iG~~~i~l~~l~~~----------~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDED----------KGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhcc----------CCCcccEEEECcC
Confidence            9999999999998521          2334678998754

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=1.6e-20  Score=150.88  Aligned_cols=115  Identities=33%  Similarity=0.568  Sum_probs=96.8

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~  256 (336)
                      |.|+|+|++|++|+..+.. .+||||++.+++..++|+++.+ ++||.|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            6899999999999998876 8999999999998899998865 7999999999999976 4567999999999875 899


Q ss_pred             eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      ||++.+++.++..+            .....||+|..                        .+..+|+|+|+|+|
T Consensus        80 iG~~~~~l~~~~~~------------~~~~~w~~L~~------------------------~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKE------------GEFDDWYELTL------------------------KGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhc------------CCCCCcEEecc------------------------CCcEeeEEEEEEEC
Confidence            99999999998542            23467987432                        33467999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=6.5e-20  Score=148.70  Aligned_cols=101  Identities=25%  Similarity=0.377  Sum_probs=89.3

Q ss_pred             EEEEEEEeeee---cccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC----
Q 019768          181 LLKVKVVKGIN---LAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS----  252 (336)
Q Consensus       181 ~L~V~v~~a~~---L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~----  252 (336)
                      +|+|+|++|++   |...+.. .+||||++.+++++.||+++++++||+|||+|.|.+......|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999   7887876 899999999999999999999999999999999999776678999999999874    


Q ss_pred             --CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          253 --ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       253 --~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                        +|++||++.++|..+.            .+.....||+|.+
T Consensus        81 ~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence              8999999999999984            3446788998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=9.7e-20  Score=148.31  Aligned_cols=124  Identities=31%  Similarity=0.575  Sum_probs=102.9

Q ss_pred             EEEEEEEEeeeecccCCC--C-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019768          180 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~--~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd  255 (336)
                      |.|+|+|++|++|+..+.  . .+||||++.++...++|++++++.||.|||.|.|.+.. ....|.|+|||++.++.++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999998886  5 88999999999999999999999999999999999976 5678999999999988999


Q ss_pred             eeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      +||.+.++|.++....         .......||+|.+....                   .....+|+|+|++.|
T Consensus        81 ~lG~~~i~l~~~~~~~---------~~~~~~~w~~L~~~~~~-------------------~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADG---------KTGQSDKWITLKSTRPG-------------------KTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhccc---------ccCccceeEEccCcccC-------------------ccccccceEEEEEEC
Confidence            9999999999986321         12235689986552100                   123468999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.5e-19  Score=144.85  Aligned_cols=88  Identities=34%  Similarity=0.588  Sum_probs=81.3

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCeeE
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      +|+|.|++|++|+..+.. .+||||++++++...+|++++++.||.|||.|.|.+... ...|.|+|||++.+++|++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            478999999999998876 889999999999999999999999999999999998763 678999999999999999999


Q ss_pred             EEEEeCcccc
Q 019768          259 EAEIDIQPLL  268 (336)
Q Consensus       259 ~~~i~l~~l~  268 (336)
                      .+.++|.++.
T Consensus        81 ~~~~~l~~l~   90 (116)
T cd08376          81 RCEIDLSALP   90 (116)
T ss_pred             EEEEeHHHCC
Confidence            9999999874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=1.7e-19  Score=148.74  Aligned_cols=95  Identities=36%  Similarity=0.580  Sum_probs=86.3

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCC
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFS  252 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~  252 (336)
                      .....|.|+|+|++|++|+..+.. .+||||++.++.+.++|++++++.||.|||.|.|.+.. ....|.|+|||++.++
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~   89 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS   89 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence            344679999999999999998776 89999999999999999999999999999999999876 4467999999999999


Q ss_pred             CCCeeEEEEEeCccccc
Q 019768          253 ADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~  269 (336)
                      +|++||++.++|.++..
T Consensus        90 ~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          90 PDDFLGRTEIRVADILK  106 (136)
T ss_pred             CCCeeEEEEEEHHHhcc
Confidence            99999999999999864

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=2e-19  Score=145.36  Aligned_cols=119  Identities=34%  Similarity=0.533  Sum_probs=99.5

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      .|+|+|++|++|+..+.. .+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            379999999999998876 899999999977 578999999999999999999998765678999999999999999999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                      .+.+++.++..            +...+.|++|.+..                      .....|+|+|.++|.|
T Consensus        81 ~~~~~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLEL------------NKPTEVKLKLEDPN----------------------SDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCC------------CCCeEEEEECCCCC----------------------CccCceEEEEEEEECC
Confidence            99999999853            23455677754310                      1245799999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.82  E-value=1e-19  Score=146.59  Aligned_cols=113  Identities=38%  Similarity=0.715  Sum_probs=97.3

Q ss_pred             EEEEEEEEeeeecccCCC-------CCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCC
Q 019768          180 GLLKVKVVKGINLAIRDM-------MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF  251 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~-------~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~  251 (336)
                      |.|+|+|++|++|+..+.       +.+||||++.+++..++|++++++.||.|+|.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998764       268999999999999999999999999999999999865 567899999999988


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                       ++++||.+.+++.++...            ...+.||+|                          .....|+|+|+++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~------------~~~~~w~~L--------------------------~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKK------------GFIDEWLPL--------------------------EDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhccc------------CccceEEEC--------------------------cCCCCceEEEEEeC
Confidence             899999999999998532            235678873                          44578999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4e-19  Score=148.78  Aligned_cols=105  Identities=26%  Similarity=0.375  Sum_probs=90.1

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccC-CCCceEEEEEecCCCCCCCee
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      .|+|+|++|++|+..+.. .+||||++.++++.++|+++.+ ++||+|||.|.|.+.. ....|.|+|||++.++++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            389999999999998887 8999999999999999999977 6999999999999865 346899999999998899999


Q ss_pred             EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      |++.++|.++..+.        ..+...++||+|.+
T Consensus        81 G~v~i~L~~l~~~~--------~~~~~~~~W~~L~~  108 (150)
T cd04019          81 GRAVIPLNDIERRV--------DDRPVPSRWFSLER  108 (150)
T ss_pred             EEEEEEHHHCcccC--------CCCccCCceEECcC
Confidence            99999999985321        12345789999765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=3.3e-19  Score=144.07  Aligned_cols=99  Identities=23%  Similarity=0.471  Sum_probs=85.6

Q ss_pred             EEEEEEeeeecccCCC-C-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          182 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~-~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      |.|+|++|+||+..+. . .+||||.+.++++ ..+|+++++|+||+|||+|.|.+......|.|.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            7899999999998743 2 7899999999765 57999999999999999999999876678999999999999999999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  292 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~  292 (336)
                      .+.++++++..            +...+.||+|.
T Consensus        82 ~~~i~l~~l~~------------~~~~~~w~~L~  103 (121)
T cd08401          82 KVAIKKEDLHK------------YYGKDTWFPLQ  103 (121)
T ss_pred             EEEEEHHHccC------------CCCcEeeEEEE
Confidence            99999999853            23467899854

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=5.4e-19  Score=143.83  Aligned_cols=121  Identities=24%  Similarity=0.365  Sum_probs=98.5

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  259 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~  259 (336)
                      |.|+|++|++|+. ..+.+||||+++++.  ++++|+++.++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            6799999999988 444899999999973  5689999999999999999999997666789999999999989999999


Q ss_pred             EEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768          260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  335 (336)
Q Consensus       260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  335 (336)
                      +.+++.++...            .....||+|..+..                    ......|+|++++.|.+..
T Consensus        80 ~~i~l~~l~~~------------~~~~~~~~L~~~~~--------------------~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          80 AIVPFDELRKN------------PSGRQIFPLQGRPY--------------------EGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEeHHHhccC------------CceeEEEEecCCCC--------------------CCCCcceEEEEEEEEeccc
Confidence            99999998632            22356887643110                    0134689999999998753

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4.1e-19  Score=144.73  Aligned_cols=120  Identities=24%  Similarity=0.342  Sum_probs=97.8

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEecCCCC-CC
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFS-AD  254 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~~~~-~d  254 (336)
                      .|+|+|++|++|+..+.. .+||||++.+++++++|+++.++.||.|||.|.|.+...    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            389999999999988875 899999999999999999999999999999999998752    357999999999886 89


Q ss_pred             CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                      ++||++.+++.++..           .+.....||+|....                     .....+|+|+|++.+.
T Consensus        81 ~~lG~v~i~l~~l~~-----------~~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVP-----------PSEAVVQRYPLEKRG---------------------LFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCC-----------CCCccceEeEeeeCC---------------------CCCCccEEEEEEEEEc
Confidence            999999999999852           234467899854311                     1223578888888763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.80  E-value=4.3e-19  Score=143.61  Aligned_cols=120  Identities=31%  Similarity=0.541  Sum_probs=98.5

Q ss_pred             EEEEEEEEEeeeecccCCCC--CCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD  254 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~d  254 (336)
                      +|.|+|+|++|++|+..+..  .+||||++.++.  ..++|+++.++.||.|||.|.|.+......|.|+|||++..+.|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            48899999999999965533  689999999977  78899999999999999999999886678899999999998899


Q ss_pred             CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                      ++||.+.++|.++.....            ...|+.                       .+...++..|+|+++++|+|
T Consensus        81 ~~iG~~~~~l~~l~~~~~------------~~~~~~-----------------------~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPE------------QENLTK-----------------------NLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCcc------------ccCcch-----------------------hhhcCCccceEEEEEEEeCC
Confidence            999999999999864321            111110                       12235567899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=8.8e-19  Score=140.90  Aligned_cols=118  Identities=28%  Similarity=0.520  Sum_probs=99.2

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      |.|.|+|++|++|+..+.. .+||||+++++...++|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            6899999999999998876 899999999999889999999999999999999998765678999999999988999999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                      ++.+++.++..+              ...||+|.+..                     ......|+|.|+++++
T Consensus        81 ~~~~~l~~~~~~--------------~~~~~~l~~~~---------------------~~~~~~G~i~l~~~~~  119 (119)
T cd08377          81 KVAIPLLSIKNG--------------ERKWYALKDKK---------------------LRTRAKGSILLEMDVI  119 (119)
T ss_pred             EEEEEHHHCCCC--------------CceEEECcccC---------------------CCCceeeEEEEEEEeC
Confidence            999999887422              24698764411                     1223578898888763

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=7.9e-19  Score=144.07  Aligned_cols=125  Identities=33%  Similarity=0.523  Sum_probs=99.9

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS  252 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~  252 (336)
                      .|+|+|++|++|+..+.. .+||||++++.+.       .++|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            389999999999998876 8999999999654       57999999999999999999998775678999999999999


Q ss_pred             CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                      ++++||++.+++.++.......      .......||+|....                     -.+...|+|+|++.|+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~l~~~~---------------------~~~~~~G~l~~~~~~~  133 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGN------ERRYTFKDYLLRPRS---------------------SKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccc------cccccchheeeeecC---------------------CCCcceeEEEEEEeeC
Confidence            9999999999999987542110      012456798753300                     1234689999999884

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.79  E-value=1e-18  Score=140.49  Aligned_cols=105  Identities=20%  Similarity=0.274  Sum_probs=86.7

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEE-C----C--eEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEecC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRL-G----Q--QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHD  249 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l-~----~--~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~  249 (336)
                      .|+|+|++|++|+..+.+.+||||++++ +    .  ++++|+++.+++||+|||+|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            3899999999999887668899999998 3    2  356899999999999999999999742    245899999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL  297 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~  297 (336)
                      ..+++++||++.++|.++..+            .....|++|......
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~------------~~~~~w~~L~~~~~~  116 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQA------------GSCACWLPLGRRIHM  116 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCC------------CcEEEEEECcCcccc
Confidence            888899999999999998532            346779987664433

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=9.5e-19  Score=141.38  Aligned_cols=101  Identities=28%  Similarity=0.461  Sum_probs=86.1

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEEE
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEA  260 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~  260 (336)
                      |+|+|++|++|+..   .+||||++.+++...+|++++++.||+|||+|.|.+.. ....|.|+|||++.+ .+++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            78999999999888   67999999999999999999999999999999999876 457799999999987 88999999


Q ss_pred             EEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          261 EIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       261 ~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++|.++.....       .......+||+|.+
T Consensus        78 ~i~l~~l~~~~~-------~~~~~~~~W~~L~~  103 (121)
T cd08378          78 CFDLSEVPTRVP-------PDSPLAPQWYRLED  103 (121)
T ss_pred             EEEhHhCcCCCC-------CCCCCCcceEEccC
Confidence            999999854211       12234678998755

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.79  E-value=7.7e-19  Score=142.14  Aligned_cols=101  Identities=28%  Similarity=0.435  Sum_probs=86.4

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecc-cC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v-~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+...+||||++++.     ..+++|++++++.||+|||+|.|.+ +.   ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            5889999999999999983389999999995     3468999999999999999999987 32   4567999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      .++++++||++.++|.++..            ......||+|
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L  121 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDL------------SQETEKWYPL  121 (122)
T ss_pred             CCcCCcEEEEEEEecccccc------------CCCccceEEC
Confidence            99999999999999999853            2335779875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.78  E-value=1.6e-18  Score=139.51  Aligned_cols=86  Identities=31%  Similarity=0.561  Sum_probs=76.8

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~  256 (336)
                      |+|+|++|++|+..+.. .+||||++.++   ...++|++++++.||+|||+|.|.+.. ....|.|+|||++.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            78999999999988865 89999999985   356899999999999999999999865 345699999999998 8999


Q ss_pred             eEEEEEeCcccc
Q 019768          257 MGEAEIDIQPLL  268 (336)
Q Consensus       257 iG~~~i~l~~l~  268 (336)
                      ||++.+++.++.
T Consensus        81 iG~~~~~l~~l~   92 (119)
T cd04036          81 LGTVLFDVSKLK   92 (119)
T ss_pred             cEEEEEEHHHCC
Confidence            999999999885

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.78  E-value=3.2e-18  Score=138.57  Aligned_cols=101  Identities=31%  Similarity=0.509  Sum_probs=88.4

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCeeE
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      .|+|+|++|++|...+.. .+||||++++++..++|++++++.||+|||+|.|.+... ...|.|+|||++.++.+++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            389999999999998876 889999999999999999999999999999999998763 467999999999999999999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .+.++|.++...            .....||.|..
T Consensus        81 ~~~~~l~~l~~~------------~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQA------------KQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccC------------CCCCCEEECCC
Confidence            999999988532            23467998654

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.78  E-value=5.6e-18  Score=137.85  Aligned_cols=120  Identities=19%  Similarity=0.412  Sum_probs=95.8

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCe
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~  256 (336)
                      ...|+|.|++|++|+..+  .+||||++.+++.. .+|++ +++.||.|||.|.|.+... ...+.|.|||++.+++|++
T Consensus         3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            456999999999998864  57999999998754 68887 4689999999999986543 3578999999999999999


Q ss_pred             eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                      ||.+.++|..+..            +...+.||+|.....                    -.....|+|+|++.|.+
T Consensus        80 iG~v~i~l~~l~~------------~~~~~~W~~L~~~~~--------------------~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQN------------GQETDEWYPLSSASP--------------------LKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccC------------CCcccEeEEcccCCC--------------------CCCCcCcEEEEEEEEEc
Confidence            9999999998753            345678998644110                    12346799999999975

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.78  E-value=1.7e-18  Score=136.96  Aligned_cols=94  Identities=28%  Similarity=0.495  Sum_probs=83.3

Q ss_pred             EEEEEEEEeeeecccCCCC-----CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCC
Q 019768          180 GLLKVKVVKGINLAIRDMM-----SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFS  252 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-----~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~  252 (336)
                      |+|.|+|++|++|+..+..     .+||||++.++++.+||+++++++||+|||.|.|.+..  ....|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            7899999999999987632     47999999999999999999999999999999999865  3346899999999999


Q ss_pred             CCCeeEEEEEeCccccccccc
Q 019768          253 ADDIMGEAEIDIQPLLTSALA  273 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~~~  273 (336)
                      +|++||++.++|.++..+..+
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCCC
Confidence            999999999999999866543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.78  E-value=8.5e-18  Score=142.05  Aligned_cols=123  Identities=28%  Similarity=0.491  Sum_probs=100.0

Q ss_pred             EEEEEEEEEEEeeeecccCCC-----------------------------C--CCCcEEEEEECCeE-EEeeeeCCCCCc
Q 019768          177 EFIGLLKVKVVKGINLAIRDM-----------------------------M--SSDPYVVLRLGQQT-VQTTIVKSNLNP  224 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~-----------------------------~--~~dPyv~i~l~~~~-~rT~~~~~t~nP  224 (336)
                      -..|+|.|+|++|++|+.+|.                             .  .+||||++++++.+ .+|++++++.||
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP   83 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence            457999999999999998772                             1  57999999998765 599999999999


Q ss_pred             eeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceee
Q 019768          225 VWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINI  304 (336)
Q Consensus       225 ~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~  304 (336)
                      +|||.|.|.+......|.|.|||++.++ +++||.+.++++++..            +...+.||+|.+.          
T Consensus        84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~------------g~~~~~w~~L~~~----------  140 (158)
T cd04015          84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS------------GEPVEGWLPILDS----------  140 (158)
T ss_pred             ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC------------CCCcceEEECcCC----------
Confidence            9999999998776678999999999874 6899999999999853            3456889986541          


Q ss_pred             ecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          305 IDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       305 ~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                       +|+         .....|+|+|+++|.
T Consensus       141 -~~~---------~~~~~~~l~v~~~f~  158 (158)
T cd04015         141 -NGK---------PPKPGAKIRVSLQFT  158 (158)
T ss_pred             -CCC---------CCCCCCEEEEEEEEC
Confidence             122         113468999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.77  E-value=2.1e-18  Score=143.10  Aligned_cols=107  Identities=23%  Similarity=0.354  Sum_probs=89.4

Q ss_pred             EEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-ecCC
Q 019768          179 IGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~-d~~~  250 (336)
                      .|.|.|.|++|+||+..+ .. .+||||++++.  +   .++||+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            488999999999999864 33 78999999993  2   367999999999999999999999866678999999 6888


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL  297 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~  297 (336)
                      ++++++||++.|+|+.+..            +.....||+|.....+
T Consensus       108 ~~~~~~iG~~~i~L~~l~~------------~~~~~~Wy~L~~~~~~  142 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDL------------SNLVIGWYKLFPTSSL  142 (146)
T ss_pred             CCCCceEEEEEEEcccccC------------CCCceeEEecCCcccc
Confidence            8899999999999999732            2235779998765443

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.77  E-value=6.9e-18  Score=136.34  Aligned_cols=100  Identities=31%  Similarity=0.649  Sum_probs=86.5

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  259 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~  259 (336)
                      |.|+|++|++|...+.. .+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999998876 89999999997754 69999999999999999999997766789999999999999999999


Q ss_pred             EEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768          260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  292 (336)
Q Consensus       260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~  292 (336)
                      +.+++.++...           +...+.|++|.
T Consensus        82 ~~~~~~~~~~~-----------~~~~~~W~~L~  103 (121)
T cd04054          82 VSLTREVISAH-----------PRGIDGWMNLT  103 (121)
T ss_pred             EEEcHHHhccC-----------CCCCCcEEECe
Confidence            99998877421           22356798753

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.77  E-value=2.3e-18  Score=137.06  Aligned_cols=91  Identities=22%  Similarity=0.372  Sum_probs=79.4

Q ss_pred             eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECC----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~  248 (336)
                      ....|.|+|+|++|++|+.  .+.+||||++++..    .+++|+++++|+||+|||+|.|.++.   ....|.|+|||+
T Consensus        10 ~~~~~~L~V~vikA~~L~~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          10 DKQKAELHVNILEAENISV--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             cCcCCEEEEEEEEecCCCC--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            3456899999999999982  23689999999943    46799999999999999999999976   456799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccc
Q 019768          249 DTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~  268 (336)
                      |.++++++||++.+++.++.
T Consensus        88 Drfs~~d~IG~v~l~l~~~~  107 (118)
T cd08677          88 DRFSRHSTLGELRLKLADVS  107 (118)
T ss_pred             CCCCCCceEEEEEEcccccc
Confidence            99999999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.77  E-value=9.9e-18  Score=138.07  Aligned_cols=122  Identities=21%  Similarity=0.364  Sum_probs=97.4

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC----------CCCceEEEEEecC
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDHD  249 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~----------~~~~L~v~V~d~~  249 (336)
                      .|+|.|++|++|+..+.. .+||||++.++..+++|+++++++||.|||.|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            489999999999998876 89999999999999999999999999999999997432          1246899999999


Q ss_pred             CCCCCCeeEEEEE-eCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEE
Q 019768          250 TFSADDIMGEAEI-DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELE  328 (336)
Q Consensus       250 ~~~~dd~iG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~  328 (336)
                      ..++|++||++.+ ++..+...         .......+||+|..                        .+...|+|.|.
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~---------~~~~~~~~W~~L~~------------------------~~~~~Geil~~  128 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLE---------EDFPPKLQWFPIYK------------------------GGQSAGELLAA  128 (135)
T ss_pred             CCCCCccceEEEeeeeeecccC---------CCCCCCceEEEeec------------------------CCCchhheeEE
Confidence            9999999999987 44333211         12345678997532                        23478999999


Q ss_pred             EEEEeCC
Q 019768          329 LEWMPLD  335 (336)
Q Consensus       329 l~~~~~~  335 (336)
                      ++++++.
T Consensus       129 ~~~~~~~  135 (135)
T cd04017         129 FELIEVT  135 (135)
T ss_pred             eEEEEeC
Confidence            9999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.77  E-value=2.8e-18  Score=139.47  Aligned_cols=105  Identities=31%  Similarity=0.375  Sum_probs=88.4

Q ss_pred             eeEEEEEEEEEEEeeeecccCCC--CCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  244 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~  244 (336)
                      +....|.|.|.|++|+||+..+.  +.+||||++++.     ..++||+++++++||+|||+|.|.+..   ....|.|+
T Consensus        10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~   89 (125)
T cd04029          10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS   89 (125)
T ss_pred             EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            34457889999999999998765  379999999983     235799999999999999999999865   34579999


Q ss_pred             EEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          245 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      |||++.++++++||++.++|..+..            ......||||
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~~------------~~~~~~w~~l  124 (125)
T cd04029          90 VWHYDRFGRNTFLGEVEIPLDSWNF------------DSQHEECLPL  124 (125)
T ss_pred             EEECCCCCCCcEEEEEEEeCCcccc------------cCCcccEEEC
Confidence            9999999999999999999998842            2447789985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.76  E-value=1.4e-17  Score=136.59  Aligned_cols=117  Identities=27%  Similarity=0.524  Sum_probs=97.5

Q ss_pred             EEEEEEEEEEeeeecccCCC-----------CCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceEEEE
Q 019768          178 FIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV  245 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~-----------~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V  245 (336)
                      +.|.|+|+|++|++|...+.           ..+||||++.++++. .+|+++.++.||.|||+|.|.+.. ...|.|.|
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v   80 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV   80 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence            46899999999999988775           268999999998765 599999999999999999999974 47899999


Q ss_pred             EecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceE
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGEL  325 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i  325 (336)
                      ||++.++.+++||.+.++|.++...          ++...+.||+                          |+  +.|+|
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~----------~~~~~~~w~~--------------------------L~--~~G~l  122 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQR----------GSGSFDLWVD--------------------------LE--PQGKL  122 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhccc----------CCCcccEEEE--------------------------cc--CCcEE
Confidence            9999988999999999999998642          1233566775                          33  56899


Q ss_pred             EEEEEEEe
Q 019768          326 ELELEWMP  333 (336)
Q Consensus       326 ~l~l~~~~  333 (336)
                      +|++.|..
T Consensus       123 ~l~~~~~~  130 (132)
T cd04014         123 HVKIELKG  130 (132)
T ss_pred             EEEEEEec
Confidence            99998864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.76  E-value=9.8e-18  Score=134.76  Aligned_cols=105  Identities=22%  Similarity=0.366  Sum_probs=87.4

Q ss_pred             EEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768          180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  259 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~  259 (336)
                      +.|.|+|++|++|...+  ..||||+|.+++++.+|+++++ .||.|||.|.|.+......|.|+|||++.+ .||+||+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence            67999999999997755  4599999999999999999988 599999999999977666799999999975 8999999


Q ss_pred             EEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768          260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE  298 (336)
Q Consensus       260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~  298 (336)
                      +.|+|.++..+.          ...-..||+|..+-...
T Consensus        78 v~i~L~~v~~~~----------~~~~~~Wy~L~~~~~~~  106 (127)
T cd08394          78 VWIPLSTIRQSN----------EEGPGEWLTLDSEVNMK  106 (127)
T ss_pred             EEEEhHHcccCC----------CCCCCccEecChHHhcc
Confidence            999999986542          12236799976544433

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.76  E-value=4.4e-18  Score=135.13  Aligned_cols=103  Identities=40%  Similarity=0.687  Sum_probs=88.9

Q ss_pred             EEEEEEeeeecccCCC-C-CCCcEEEEEECCeEEEeeeeCCCCCcee-eceeeecccCC---CCceEEEEEecCCCCCCC
Q 019768          182 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQTVQTTIVKSNLNPVW-NEELMLSVPQE---YGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~-~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W-~e~f~f~v~~~---~~~L~v~V~d~~~~~~dd  255 (336)
                      |.|+|++|++|+..+. . .+||||++++++.+++|+++++++||.| ||.|.|.+...   ...|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6899999999998874 3 7899999999999999999999999999 99999998762   368999999999999999


Q ss_pred             eeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +||++.+++.++....         ......+||+|-+
T Consensus        81 ~iG~~~~~l~~l~~~~---------~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKD---------SVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccC---------CccccCCeEEccc
Confidence            9999999999986421         1345788998644

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=8.5e-18  Score=132.37  Aligned_cols=99  Identities=25%  Similarity=0.433  Sum_probs=87.0

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEE
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGE  259 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~  259 (336)
                      |.|+|++|++|+..+.. .+||||+++++++.++|+++.++.||+|||.|.|.+.. ....|.|+|||++.   +++||+
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~   78 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS   78 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence            88999999999988766 89999999999999999999999999999999999986 45679999999886   789999


Q ss_pred             EEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +.++|.++...          .+...+.||+|.+
T Consensus        79 ~~i~l~~l~~~----------~~~~~~~w~~L~~  102 (105)
T cd04050          79 LTLPLSELLKE----------PDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEHHHhhcc----------ccceeeeeEecCC
Confidence            99999998642          1346789998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.75  E-value=3e-17  Score=133.57  Aligned_cols=121  Identities=18%  Similarity=0.351  Sum_probs=97.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      ..+|+|+|++|++|...+.. .+||||++.++++.++|++++++.||.|||.|.|.+......|.|+|||++.+ .|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            36799999999999988876 89999999999999999999999999999999998877777899999999987 58999


Q ss_pred             EEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                      |.+.+++.++..              ....||+|....                   -...+...|.|.|++...+
T Consensus        81 G~~~~~l~~~~~--------------~~~~~~~l~~~~-------------------~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          81 GQATLSADPNDS--------------QTLRTLPLRKRG-------------------RDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             EEEEEecccCCC--------------cCceEEEcccCC-------------------CCCCCCCCCEEEEEEEEcc
Confidence            999999987521              123566642100                   0134567788888888765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.75  E-value=7.2e-18  Score=140.62  Aligned_cols=104  Identities=22%  Similarity=0.322  Sum_probs=85.7

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeeccc------------C----CCC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP------------Q----EYG  239 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~------------~----~~~  239 (336)
                      .|+|.|++|++|.. ..+.+||||++++..     .+++|+++++++||+|||.|.|.+.            .    ...
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            38999999999998 334889999999965     5679999999999999999999984            1    124


Q ss_pred             ceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccc
Q 019768          240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL  296 (336)
Q Consensus       240 ~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~  296 (336)
                      .|.|.|||++.+++|+|||++.|+|..+..+           ......||+|..+..
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~~  125 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPREE  125 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCccc
Confidence            6899999999988999999999999998532           123578999876543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=3.1e-17  Score=133.60  Aligned_cols=115  Identities=21%  Similarity=0.286  Sum_probs=95.0

Q ss_pred             EEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCeeEEEEE
Q 019768          186 VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI  262 (336)
Q Consensus       186 v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~iG~~~i  262 (336)
                      |++|++|+. ..+.+||||+++++..+++|++++++.||+|||.|.|.+..   ....|.|+|||++.+++|++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            789999998 34489999999999999999999999999999999999864   35789999999999989999999999


Q ss_pred             eCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768          263 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  335 (336)
Q Consensus       263 ~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  335 (336)
                      +|.++..            +.....|++|.+..                      .....|+|+++++|.|.+
T Consensus        81 ~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~~~l~l~~~~~~~~  119 (127)
T cd08373          81 SLQDLVS------------EGLLEVTEPLLDSN----------------------GRPTGATISLEVSYQPPD  119 (127)
T ss_pred             EhhHccc------------CCceEEEEeCcCCC----------------------CCcccEEEEEEEEEeCCC
Confidence            9999853            23456677754310                      111368999999999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.74  E-value=8.1e-18  Score=136.73  Aligned_cols=102  Identities=30%  Similarity=0.428  Sum_probs=86.2

Q ss_pred             EEEEEEEEEEeeeecccCCCC--CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ..+.|+|+|++|+||+..+..  .+||||++++.     ..+++|+++++++||+|||.|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            357899999999999998853  79999999993     235799999999999999999999864   34679999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      ++.++++++||++.++|.++...            .....||+|
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~------------~~~~~W~~L  124 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWS------------NTQPTWYPL  124 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccC------------CCCcceEEC
Confidence            99999999999999999998422            235679875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.74  E-value=1.3e-17  Score=136.01  Aligned_cols=105  Identities=24%  Similarity=0.279  Sum_probs=88.4

Q ss_pred             EEEEEEEEEEeeeecccCCC--CCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ..+.|.|.|++|+||+..+.  +.+||||++++.     ..++||++++++.||+|||+|.|.+..   ....|.|.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            35789999999999998875  488999999983     236799999999999999999999865   34689999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      ++.++++++||++.|+|.++...         ..+....+||+|
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~~---------~~~~~~~~W~~l  127 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDFE---------DTDSQRFLWYPL  127 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCcccC---------CCCccccceEEC
Confidence            99999999999999999988422         124567789974

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.74  E-value=2.1e-17  Score=133.99  Aligned_cols=103  Identities=32%  Similarity=0.565  Sum_probs=88.3

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT  250 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~  250 (336)
                      ..|.|.|+|++|++|+..+.. .+||||++++.   ...++|++++++.||+|||.|.|.+..   ....|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            358899999999999998876 89999999983   346899999999999999999999865   24579999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  292 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~  292 (336)
                      ++++++||++.++|.++..+            ...+.||+|+
T Consensus        94 ~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~l~  123 (124)
T cd08387          94 FSRDECIGVVELPLAEVDLS------------EKLDLWRKIQ  123 (124)
T ss_pred             CCCCceeEEEEEecccccCC------------CCcceEEECc
Confidence            99999999999999998532            2567899753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.73  E-value=4.8e-17  Score=131.79  Aligned_cols=87  Identities=30%  Similarity=0.559  Sum_probs=78.8

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEEC-CeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC--CCee
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--DDIM  257 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~--dd~i  257 (336)
                      |+|+|++|++|+..+.. .+||||+++++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++.  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999988876 89999999996 677899999999999999999999976 6789999999998875  5799


Q ss_pred             EEEEEeCccccc
Q 019768          258 GEAEIDIQPLLT  269 (336)
Q Consensus       258 G~~~i~l~~l~~  269 (336)
                      |++.+++.++..
T Consensus        81 G~~~i~l~~l~~   92 (123)
T cd08382          81 GCVRIRANAVLP   92 (123)
T ss_pred             eEEEEEHHHccc
Confidence            999999999864

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.73  E-value=1.7e-17  Score=131.97  Aligned_cols=89  Identities=35%  Similarity=0.631  Sum_probs=79.3

Q ss_pred             EEEEEEEEeeeecccCCCC--CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768          180 GLLKVKVVKGINLAIRDMM--SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  250 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~  250 (336)
                      |+|+|+|++|++|+..+..  .+||||++++.   ...++|+++++++||+|||.|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999988764  78999999983   346799999999999999999998754    24679999999999


Q ss_pred             CCCCCeeEEEEEeCcccc
Q 019768          251 FSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~  268 (336)
                      +++|++||++.+++.++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          81 FTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCcceEEEEEHHHHh
Confidence            999999999999999986

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.73  E-value=2e-17  Score=133.27  Aligned_cols=101  Identities=17%  Similarity=0.309  Sum_probs=84.5

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~  251 (336)
                      .+.|.|+|++|+||+..+.+.+||||++++..     .+++|++++++.||+|||+|.|.+..  ....|.|+|||++..
T Consensus        11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            57899999999999998855899999999943     35699999999999999999999865  235688999999987


Q ss_pred             C-CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          252 S-ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       252 ~-~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      + ++++||.+.|+|.++..            +..+.+||.|
T Consensus        91 ~~~~~~lG~~~i~l~~~~~------------~~~~~~Wy~l  119 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIVN------------QKEISGWYYL  119 (119)
T ss_pred             cCCCEEEEEEEecHHHhcc------------CccccceEeC
Confidence            5 47899999999999852            2346789863

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.73  E-value=3.6e-17  Score=130.10  Aligned_cols=101  Identities=23%  Similarity=0.422  Sum_probs=86.5

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-----CCceEEEEEecCCCCCCC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v~V~d~~~~~~dd  255 (336)
                      .|+|+|++|++|.   ...+||||++++++++++|++++++.||.|||.|.|.+...     ...|.|+|||++.+++++
T Consensus         5 ~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~   81 (111)
T cd04011           5 QVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDT   81 (111)
T ss_pred             EEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCC
Confidence            4899999999998   23789999999999999999999999999999999987532     357999999999998999


Q ss_pred             eeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +||++.++|.++..+         .....+.+||+|.+
T Consensus        82 ~iG~~~i~l~~v~~~---------~~~~~~~~w~~L~~  110 (111)
T cd04011          82 LIGSFKLDVGTVYDQ---------PDHAFLRKWLLLTD  110 (111)
T ss_pred             ccEEEEECCccccCC---------CCCcceEEEEEeeC
Confidence            999999999998643         23456789998644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=5.3e-17  Score=132.30  Aligned_cols=99  Identities=29%  Similarity=0.598  Sum_probs=84.9

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC--------
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF--------  251 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~--------  251 (336)
                      .|+|+|++|++|+..+.. .+||||+++++...++|+++.++.||.|||.|.|.+......|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999998876 88999999999889999999999999999999998865557899999999852        


Q ss_pred             ---CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          252 ---SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       252 ---~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                         +.+++||.+.+++.++..              ....||+|..
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~--------------~~~~w~~L~~  112 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSG--------------EMDVWYNLEK  112 (127)
T ss_pred             ccccCCCcceEEEEEhHHccC--------------CCCeEEECcc
Confidence               468999999999987631              2357998654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.73  E-value=2.3e-17  Score=133.64  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=80.8

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC------CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG------QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~------~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ..+.|.|.|++|+||+..+.. .+||||++++-      ..+++|++++++.||+|||+|.|+++.   ....|.|+|||
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            357899999999999998765 78999999982      246899999999999999999999875   45689999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      ++.++++++||.+.|+|.++.
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~  112 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFE  112 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhcc
Confidence            999999999999999999884

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.72  E-value=2.5e-16  Score=130.43  Aligned_cols=132  Identities=15%  Similarity=0.201  Sum_probs=101.8

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC-CC
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT-FS  252 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~-~~  252 (336)
                      .......|.|.|++|++|+.++    +|||.+.+++..+ ||+++.++.||.|+|.|.|........|.|.||+.+. .+
T Consensus         6 ~~R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~   81 (146)
T cd04013           6 SRRTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK   81 (146)
T ss_pred             ceEEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence            3456678999999999998876    8999999999885 9999999999999999999876666789999986543 22


Q ss_pred             ---CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEE
Q 019768          253 ---ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  329 (336)
Q Consensus       253 ---~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  329 (336)
                         ++++||.+.||+..+.            .+..+++|||+.+......+.     |        .-.....++|++++
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~~~~~~~-----~--------~~~~~~~~~lrik~  136 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPKGNGKSG-----G--------KEGKGESPSIRIKA  136 (146)
T ss_pred             cccCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCCCCCccc-----c--------ccccCCCCEEEEEE
Confidence               5789999999999985            345688999975522211100     0        01123558999999


Q ss_pred             EEEeCC
Q 019768          330 EWMPLD  335 (336)
Q Consensus       330 ~~~~~~  335 (336)
                      +|.++.
T Consensus       137 rf~~~~  142 (146)
T cd04013         137 RYQSTR  142 (146)
T ss_pred             EEEEee
Confidence            999864

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.72  E-value=1.4e-16  Score=129.42  Aligned_cols=88  Identities=31%  Similarity=0.501  Sum_probs=78.3

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd  255 (336)
                      .|+|+|++|++|+..+.. .+||||++.+..   ...+|++++++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            589999999999998876 889999999854   35799999999999999999999977 3567999999999988999


Q ss_pred             eeEEEEEeCcccc
Q 019768          256 IMGEAEIDIQPLL  268 (336)
Q Consensus       256 ~iG~~~i~l~~l~  268 (336)
                      +||++.++|..+.
T Consensus        82 ~iG~~~i~l~~~~   94 (126)
T cd04043          82 LCGRASLKLDPKR   94 (126)
T ss_pred             eEEEEEEecCHHH
Confidence            9999999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.72  E-value=4.5e-17  Score=131.99  Aligned_cols=101  Identities=29%  Similarity=0.510  Sum_probs=86.6

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .+.|+|+|++|++|+..+.. .+||||++++.   ...++|++++++.||+|||.|.|.+..   ....|.|+|||++.+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence            47899999999999988876 88999999984   346799999999999999999999865   245799999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      +++++||++.++|.++..            +...+.||++
T Consensus        95 ~~~~~lG~~~i~l~~~~~------------~~~~~~W~~l  122 (124)
T cd08385          95 SKHDLIGEVRVPLLTVDL------------GHVTEEWRDL  122 (124)
T ss_pred             CCCceeEEEEEecCcccC------------CCCcceEEEc
Confidence            999999999999998743            3456778863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.71  E-value=7.6e-17  Score=134.75  Aligned_cols=89  Identities=27%  Similarity=0.458  Sum_probs=79.6

Q ss_pred             EEEEEEEeeeecccCCCC---------------CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEE
Q 019768          181 LLKVKVVKGINLAIRDMM---------------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKL  243 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~---------------~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v  243 (336)
                      .|.|+|++|++|+.++..               .+||||++.+++++.+|+++++++||+|||+|.|.+..  ....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            378999999999988733               47999999999999999999999999999999998643  4568999


Q ss_pred             EEEecCCCCCCCeeEEEEEeCccccc
Q 019768          244 EVFDHDTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       244 ~V~d~~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      +|||++..++|++||.+.++|.++..
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~  106 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISN  106 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhcc
Confidence            99999999999999999999998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.70  E-value=1.7e-16  Score=129.49  Aligned_cols=90  Identities=28%  Similarity=0.458  Sum_probs=77.7

Q ss_pred             EEEEEEEEEeeeecccCCC--CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|+|+|++|++|+..+.  +.+||||++.+.   .++.||+++++++||+|||+|.|. +..   ....|.|+|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            4789999999999998775  378999999984   346799999999999999999994 443   2346999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .+++|++||++.++|.++-
T Consensus        95 ~~~~d~~lG~~~i~L~~l~  113 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGAD  113 (128)
T ss_pred             CCCCCceeEEEEEeccccC
Confidence            9999999999999999883

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.70  E-value=9e-17  Score=130.49  Aligned_cols=91  Identities=26%  Similarity=0.387  Sum_probs=80.2

Q ss_pred             EEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCCCCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~~dd  255 (336)
                      -.|.|+|+|++|++|+......+||||+|+++++.++|++++++.||+|||+|.|....  ....|.|+|||++.+++|+
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd  105 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD  105 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence            46899999999999985333388999999999889999999999999999999997432  4678999999999999999


Q ss_pred             eeEEEEEeCcccc
Q 019768          256 IMGEAEIDIQPLL  268 (336)
Q Consensus       256 ~iG~~~i~l~~l~  268 (336)
                      +||.+.++|....
T Consensus       106 ~IG~~~i~l~~~~  118 (127)
T cd04032         106 LLGTCSVVPEAGV  118 (127)
T ss_pred             eeEEEEEEecCCc
Confidence            9999999998764

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.70  E-value=1.2e-16  Score=129.90  Aligned_cols=101  Identities=30%  Similarity=0.402  Sum_probs=86.2

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|+|+|++|++|+..+.. .+||||++.+.     ..+++|++++++.||+|||+|.|.+..   ....|.|.|||++
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~   94 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK   94 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence            47899999999999998876 89999999984     457899999999999999999999864   2467999999998


Q ss_pred             CC--CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          250 TF--SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       250 ~~--~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      .+  +++++||++.++|.++..+            .....||+|
T Consensus        95 ~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L  126 (127)
T cd04030          95 SFLSREKKLLGQVLIDLSDLDLS------------KGFTQWYDL  126 (127)
T ss_pred             cccCCCCceEEEEEEeccccccc------------CCccceEEC
Confidence            75  6899999999999998432            345779874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.70  E-value=1e-16  Score=129.96  Aligned_cols=92  Identities=29%  Similarity=0.409  Sum_probs=80.4

Q ss_pred             eEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC----CCCceEEEE
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEV  245 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V  245 (336)
                      ....+.|.|+|++|++|+..+.. .+||||++++..     .+++|++++++.||+|||+|.|.+..    ....|.|+|
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V   91 (125)
T cd04031          12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV   91 (125)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence            34458899999999999998876 899999999954     56799999999999999999998643    346799999


Q ss_pred             EecCCCCCCCeeEEEEEeCccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      ||++.++++++||++.++|.+.
T Consensus        92 ~d~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          92 WDYDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             EeCCCCCCCcEeeEEEEecccc
Confidence            9999998999999999999883

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.70  E-value=1.3e-16  Score=129.43  Aligned_cols=102  Identities=28%  Similarity=0.458  Sum_probs=88.8

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccCC----CCceEEEEEecCCCCC
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSA  253 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~~~~~  253 (336)
                      |.|.|.|++|++|+..+.. .+||||++++++..++|++..+ +.||.|||.|.|.+...    ...|.|+|||++.++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            6799999999999988776 8999999999999999999885 89999999999999764    4679999999999989


Q ss_pred             CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          254 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       254 dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +++||.+.++|.++...            ...+.||+|..
T Consensus        81 d~~iG~~~i~l~~l~~~------------~~~~~~~~l~p  108 (124)
T cd04049          81 DDFIGEATIHLKGLFEE------------GVEPGTAELVP  108 (124)
T ss_pred             CCeEEEEEEEhHHhhhC------------CCCcCceEeec
Confidence            99999999999998643            23467887654

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.70  E-value=3e-17  Score=154.61  Aligned_cols=126  Identities=21%  Similarity=0.439  Sum_probs=103.7

Q ss_pred             CCCCh-HHHHHHHHhCCCCCCCcCCCCCCC-CeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhc
Q 019768           15 KPSSG-KGRLKDLLLQRDNRICADCGAPDP-KWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVG   92 (336)
Q Consensus        15 ~~~~~-~~~l~~~~~~~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~g   92 (336)
                      ++|.. ++++|++++.|+|+.|++|....+ +|+++..|.|+|+.|+|+.|.|.. -+|||||+|.++++.|+..++. +
T Consensus         7 e~E~~~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~lQs-h   84 (524)
T KOG0702|consen    7 EDEYDYEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSFLQS-H   84 (524)
T ss_pred             cchhHHHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHHHhh-c
Confidence            34545 899999999999999999999888 999999999999999999999843 4699999999999999999987 5


Q ss_pred             cccccchhhhhccCCCCCCCCCCC-CHHHHHHHHHhhhccceecCCcccccC
Q 019768           93 GNSSANAIYEAFIPEGVSKPGPDS-SHEIRSKFIRSKYELQEFLKPSLRIAS  143 (336)
Q Consensus        93 gN~~~n~~~e~~~~~~~~~p~~~~-~~~~r~~fI~~KY~~k~~~~~~~~~~s  143 (336)
                      ||..+.++|....+.. +.--|+. .....++|+|.||+.++|+.+.-....
T Consensus        85 gNq~~k~i~fkl~D~q-~S~vPD~rn~~~~kef~q~~y~~kr~~v~~n~~k~  135 (524)
T KOG0702|consen   85 GNQVCKEIWFKLFDFQ-RSNVPDSRNPQKVKEFQQEKYVKKRYYVPKNQMKI  135 (524)
T ss_pred             chhhhhhhhhcchhhh-hccCCCcccchhhHHHHhhhhccceeecCcccccc
Confidence            9999999998765543 2222222 334457999999999999987644433

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.69  E-value=2.2e-16  Score=128.12  Aligned_cols=101  Identities=28%  Similarity=0.510  Sum_probs=85.6

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~  250 (336)
                      .+.|.|.|++|++|+..+.. .+||||++.+   +....+|++++++.||.|||.|.|.+..    ....|.|+|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            46899999999999988876 8999999998   3466899999999999999999997532    23569999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      ++++++||++.++|.++..            +.....||+|
T Consensus        95 ~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~l  123 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDL------------TEEQTFWKDL  123 (125)
T ss_pred             CcCCcEeeEEEEecccccC------------CCCcceEEec
Confidence            9999999999999999842            3346778875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2e-16  Score=127.59  Aligned_cols=101  Identities=27%  Similarity=0.446  Sum_probs=88.4

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      |.|.|+|++|++|+..+.. .+||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            6899999999999998866 899999999976 46899999999999999999999877667899999999999999999


Q ss_pred             EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      |++.+++.++...             ..+.||.+.+
T Consensus        81 G~~~~~l~~l~~~-------------~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKK-------------NEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCC-------------CCCceEEecC
Confidence            9999999998643             2367886544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.69  E-value=1.6e-16  Score=128.37  Aligned_cols=102  Identities=31%  Similarity=0.486  Sum_probs=86.0

Q ss_pred             EEEEEEEEEEeeeecccCC-CC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ..+.|+|+|++|++|+..+ .. .+||||++++..     .+.+|++++++.||+|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d   91 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH   91 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence            4588999999999999888 44 899999998831     45799999999999999999999865   24679999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      ++.++++++||++.++|.++..+            .....||+|
T Consensus        92 ~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~w~~l  123 (123)
T cd08521          92 HDRFGRNTFLGEVEIPLDSWDLD------------SQQSEWYPL  123 (123)
T ss_pred             CCCCcCCceeeEEEEeccccccc------------CCCccEEEC
Confidence            99999999999999999998422            235779874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.68  E-value=1.8e-16  Score=128.58  Aligned_cols=91  Identities=21%  Similarity=0.432  Sum_probs=81.3

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeC-CCCCceeeceeeecccCC-----CCceEEEEEecCCCC
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVK-SNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFS  252 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~v~V~d~~~~~  252 (336)
                      .|+|+|++|++|+..+.. .+||||++++++ .+++|+++. ++.||.|||.|.|.+...     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            389999999999988865 899999999988 788999986 589999999999999765     578999999999988


Q ss_pred             CCCeeEEEEEeCccccccc
Q 019768          253 ADDIMGEAEIDIQPLLTSA  271 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~  271 (336)
                      .+++||.+.++|.++....
T Consensus        81 ~~~~lG~~~i~l~~l~~~~   99 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGA   99 (125)
T ss_pred             CCCcEEEEEEEHHHhhccc
Confidence            9999999999999997543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.68  E-value=2.6e-16  Score=133.52  Aligned_cols=91  Identities=29%  Similarity=0.430  Sum_probs=80.1

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d  247 (336)
                      ..|.|.|+|++|++|+..+.. .+||||++++     +..+++|++++++.||+|||.|.|.+..    ....|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            578899999999999998866 8999999988     2357899999999999999999998532    23579999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      ++.++++++||++.+++.++.
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~  125 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGK  125 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccc
Confidence            999999999999999999875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.67  E-value=4.5e-16  Score=126.28  Aligned_cols=100  Identities=22%  Similarity=0.370  Sum_probs=84.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~~  250 (336)
                      .+.|.|+|++|+||+..+.. ..||||++.+   ..++++|+++++ .||+|||+|.|+ +..   ....|.|+|||++.
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~   93 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER   93 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence            47899999999999998876 7899999877   235679999888 999999999998 654   45679999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      ++++++||++.|+|.++..            +.....||+|
T Consensus        94 ~~~~~~lG~~~i~L~~l~~------------~~~~~~w~~L  122 (124)
T cd08389          94 MRKERLIGEKVVPLSQLNL------------EGETTVWLTL  122 (124)
T ss_pred             cccCceEEEEEEeccccCC------------CCCceEEEeC
Confidence            9999999999999999843            2346678875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.67  E-value=5.4e-16  Score=123.34  Aligned_cols=98  Identities=22%  Similarity=0.411  Sum_probs=82.2

Q ss_pred             CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCC
Q 019768          199 SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD  276 (336)
Q Consensus       199 ~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~  276 (336)
                      .+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.+ ++++||.+.++|.++...      
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~------   84 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDA------   84 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhh------
Confidence            6899999999875 5799999999999999999999876 346799999999998 899999999999998532      


Q ss_pred             CCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeC
Q 019768          277 PEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL  334 (336)
Q Consensus       277 ~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~  334 (336)
                           +.....||+|                          .+...|+|+++++|.|+
T Consensus        85 -----~~~~~~w~~L--------------------------~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          85 -----TSVGQQWFPL--------------------------SGNGQGRIRISALWKPV  111 (111)
T ss_pred             -----hhccceeEEC--------------------------CCCCCCEEEEEEEEecC
Confidence                 1224678863                          33568999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.67  E-value=1.6e-16  Score=130.85  Aligned_cols=91  Identities=29%  Similarity=0.451  Sum_probs=78.7

Q ss_pred             eEEEEEEEEEEEeeeecccCCC---CCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019768          176 VEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  244 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~---~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~  244 (336)
                      ....+.|+|.|++|+||...+.   ..+||||++++..     .+++|+++++++||+|||.|.|.++.   ....|.|+
T Consensus        11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            3346889999999999999873   2589999999843     25689999999999999999999976   34679999


Q ss_pred             EEecCCCCCCCeeEEEEEeCcc
Q 019768          245 VFDHDTFSADDIMGEAEIDIQP  266 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~~  266 (336)
                      |||++.++++++||++.+.+..
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcC
Confidence            9999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>PLN03008 Phospholipase D delta

Probab=99.67  E-value=6.1e-16  Score=156.22  Aligned_cols=128  Identities=27%  Similarity=0.556  Sum_probs=103.8

Q ss_pred             eeEEEEEEEEEEEeeeecccCC-------------------------------------------CCCCCcEEEEEECCe
Q 019768          175 MVEFIGLLKVKVVKGINLAIRD-------------------------------------------MMSSDPYVVLRLGQQ  211 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dPyv~i~l~~~  211 (336)
                      ..-.-|.|.|+|.+|++|+.++                                           ..++||||+|.++++
T Consensus         9 ~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~   88 (868)
T PLN03008          9 VMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA   88 (868)
T ss_pred             eEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc
Confidence            4456799999999999987421                                           125699999999876


Q ss_pred             E-EEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeee
Q 019768          212 T-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  290 (336)
Q Consensus       212 ~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~  290 (336)
                      + .||++++++.||+|||+|.|.+......|.|+|||+|.++ +++||++.|||.++..            +..++.|++
T Consensus        89 rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~------------Ge~vd~Wl~  155 (868)
T PLN03008         89 TLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS------------GERISGWFP  155 (868)
T ss_pred             ceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCC------------CCceEEEEE
Confidence            4 5999999999999999999999886678999999999996 5899999999999853            456789998


Q ss_pred             cCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768          291 SDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  335 (336)
Q Consensus       291 l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  335 (336)
                      |.+           .+|+         ....+|+|+|+|+|.|+.
T Consensus       156 Ll~-----------~~~k---------p~k~~~kl~v~lqf~pv~  180 (868)
T PLN03008        156 VLG-----------ASGK---------PPKAETAIFIDMKFTPFD  180 (868)
T ss_pred             ccc-----------cCCC---------CCCCCcEEEEEEEEEEcc
Confidence            654           1121         123568999999999985

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.66  E-value=2.3e-16  Score=129.82  Aligned_cols=88  Identities=26%  Similarity=0.368  Sum_probs=76.9

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|+||+..+.. .+||||++++..     .+++|+++++++||+|||+|.|.++.   ....|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            57899999999999998865 899999999922     25689999999999999999999875   4567999999999


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 019768          250 TFSADDIMGEAEIDIQP  266 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~  266 (336)
                      .++++++||++.+....
T Consensus        94 ~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          94 EDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCeeEEEEECCCC
Confidence            99999999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.66  E-value=8.6e-16  Score=124.18  Aligned_cols=91  Identities=26%  Similarity=0.422  Sum_probs=79.7

Q ss_pred             EEEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          178 FIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      ..+.|.|.|++|++|+..+ .. .+||||++++.   ....+|++++++.||+|||.|.|.+..   ....|.|+|||++
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   91 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD   91 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence            4578999999999999987 34 88999999983   346799999999999999999999865   2357999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      ..+++++||++.++|.++.
T Consensus        92 ~~~~~~~iG~~~i~L~~l~  110 (123)
T cd08390          92 RFSRHCIIGHVLFPLKDLD  110 (123)
T ss_pred             cCCCCcEEEEEEEecccee
Confidence            9888999999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.66  E-value=3.5e-15  Score=124.86  Aligned_cols=124  Identities=24%  Similarity=0.393  Sum_probs=88.7

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccCC---------CCceEEE
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE---------YGPVKLE  244 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~~---------~~~L~v~  244 (336)
                      |.|+|....+-+|+..+.. ..||||++++     +.++.||+++++|+||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4444444444446777655 7899999997     34678999999999999999999998653         3579999


Q ss_pred             EEecCCC-CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccc
Q 019768          245 VFDHDTF-SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG  323 (336)
Q Consensus       245 V~d~~~~-~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G  323 (336)
                      |||++.+ .+|++||++.++|..+...            ..+..|++|-++       -.-.+|++  ++.+++...-.|
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~------------~~~~~~~~L~~~-------~k~~Gg~l--~v~ir~r~p~~~  142 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETK------------CEIHESVDLMDG-------RKATGGKL--EVKVRLREPLTG  142 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEccccccc------------CcceEEEEhhhC-------CCCcCCEE--EEEEEecCCCcc
Confidence            9999986 5799999999999998532            235568875431       12235665  455555554445


Q ss_pred             e
Q 019768          324 E  324 (336)
Q Consensus       324 ~  324 (336)
                      +
T Consensus       143 ~  143 (155)
T cd08690         143 K  143 (155)
T ss_pred             c
Confidence            4

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=4.2e-17  Score=151.76  Aligned_cols=115  Identities=30%  Similarity=0.466  Sum_probs=99.8

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF  251 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~  251 (336)
                      ..|+|.|.+|+||.++|.+ .+||||++.+     +..+++|++++.++||+|||+|.|.+.+  ....|.|+|||||..
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            5689999999999999998 9999999999     2356799999999999999999999976  456799999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDG  307 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g  307 (336)
                      +++||+|...+.+++|..             ..+++||.|..+...+..+++..++
T Consensus       260 sRNDFMGslSFgisEl~K-------------~p~~GWyKlLsqeEGEyyNvp~~~~  302 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQK-------------APVDGWYKLLSQEEGEYYNVPVPDE  302 (683)
T ss_pred             ccccccceecccHHHHhh-------------cchhhHHHHhhhhcCceeccCCCCc
Confidence            999999999999999863             3478899988888777777776643

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=6.7e-16  Score=127.42  Aligned_cols=105  Identities=23%  Similarity=0.385  Sum_probs=88.1

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEEC----CeEEEeeeeCCCCCceeeceeeecccCC----------------CCce
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPV  241 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~----~~~~rT~~~~~t~nP~W~e~f~f~v~~~----------------~~~L  241 (336)
                      |+|.|++|++|+......+||||+++++    ...++|++++++.+|.|+|.|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999998833389999999997    6788999999999999999999998653                3579


Q ss_pred             EEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768          242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE  298 (336)
Q Consensus       242 ~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~  298 (336)
                      .|+|||++.++++++||++.++|.++..            ......||+|..+..+.
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~------------~~~~~~W~~L~~~~~~~  125 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQ------------AGSHQAWYFLQPREAPG  125 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccC------------CCcccceEecCCcCCCC
Confidence            9999999998899999999999999852            22457899987755433

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=1.4e-15  Score=121.65  Aligned_cols=112  Identities=21%  Similarity=0.419  Sum_probs=84.7

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCee
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      |+|+|++|++|+..  +.+||||++++++.. .+|+++++ .||.|||+|.|.+..   ....|.|.+||.+....+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999987  578999999998754 79999999 999999999999976   234678888998876666677


Q ss_pred             EEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      |.+.+  ..+..            +...+.||+|....                     ......|+|+|++.|
T Consensus        79 g~v~l--~~~~~------------~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~  117 (117)
T cd08383          79 GKVAL--SKLDL------------GQGKDEWFPLTPVD---------------------PDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEe--cCcCC------------CCcceeEEECccCC---------------------CCCCcCceEEEEEEC
Confidence            76554  44321            33467899865411                     012357899998876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.65  E-value=8.3e-16  Score=128.71  Aligned_cols=88  Identities=34%  Similarity=0.565  Sum_probs=77.6

Q ss_pred             EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----------------------------eEEEeeeeCCCCCcee
Q 019768          177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----------------------------QTVQTTIVKSNLNPVW  226 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----------------------------~~~rT~~~~~t~nP~W  226 (336)
                      ...+.|.|+|++|++|...+.. .+||||++.+..                             ..++|+++.+++||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            3578999999999999998876 899999999853                             2368999999999999


Q ss_pred             eceeeecccC-CCCceEEEEEecCCCCCCCeeEEEEEeCcccc
Q 019768          227 NEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       227 ~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      ||.|.|.+.. ....|.|+|||++    +++||++.+++.++.
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            9999999875 4578999999987    899999999999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.64  E-value=5.4e-15  Score=121.69  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=82.0

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECC-------------eEEEeeeeCCCCCcee-eceeeecccCCCCceEEEE
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------QTVQTTIVKSNLNPVW-NEELMLSVPQEYGPVKLEV  245 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-------------~~~rT~~~~~t~nP~W-~e~f~f~v~~~~~~L~v~V  245 (336)
                      +++|.+++|++|+ .+.. .+||||++.+..             +.++|+++++++||+| ||.|.|.+.. .+.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 4544 899999999932             3689999999999999 9999999864 46899999


Q ss_pred             EecCCCCC---CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          246 FDHDTFSA---DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       246 ~d~~~~~~---dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ||++..++   +++||++.+++.++....         .......||++..
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~---------~~~~~~~~~~l~k  121 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH---------AIGDQELSYTLGR  121 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccc---------cCCceEEEEECCc
Confidence            99875443   799999999999997542         2223667887654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.64  E-value=5.8e-16  Score=127.61  Aligned_cols=92  Identities=33%  Similarity=0.445  Sum_probs=79.2

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEE
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEV  245 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V  245 (336)
                      .....|.|.|.|++|++|+..+.. .+||||++++.  .   ..++|+++++++||.|||.|.|.+...   ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            344568999999999999988876 89999999984  2   356899999999999999999998652   34789999


Q ss_pred             EecCCCCCCCeeEEEEEeCcc
Q 019768          246 FDHDTFSADDIMGEAEIDIQP  266 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~  266 (336)
                      ||++.+++|++||++.+++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             EeCCCCCCCceeEEEEECCcc
Confidence            999999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=8.9e-16  Score=126.07  Aligned_cols=91  Identities=30%  Similarity=0.394  Sum_probs=80.4

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-------CeEEEeeeeCCCCCceeeceeeecccC-----CCCceEEEE
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEV  245 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-------~~~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V  245 (336)
                      .+.|+|.|++|++|+..+.. .+||||++++.       ...++|+++++++||+|||.|.|.+..     ....|.|+|
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V   94 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV   94 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence            46799999999999988775 89999999984       346899999999999999999999864     245799999


Q ss_pred             EecCCCCCCCeeEEEEEeCccccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      ||++.++++++||++.++|.++..
T Consensus        95 ~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          95 KDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EecCCCCCCcEeEEEEEeHHHCCc
Confidence            999999889999999999999863

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=6.5e-16  Score=126.79  Aligned_cols=91  Identities=29%  Similarity=0.428  Sum_probs=79.7

Q ss_pred             eEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEE
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVF  246 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~  246 (336)
                      ....|.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||+|||+|.|.+..   ....|.|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            34568999999999999998876 899999999842     35799999999999999999999865   2457999999


Q ss_pred             ecCCCCCCCeeEEEEEeCcc
Q 019768          247 DHDTFSADDIMGEAEIDIQP  266 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~  266 (336)
                      |++..+++++||++.+++..
T Consensus        89 d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             eCCCCCCccEEEEEEEecCC
Confidence            99998899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.64  E-value=1.6e-15  Score=124.11  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=88.8

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC--CCceEEEEEecCCC
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE--YGPVKLEVFDHDTF  251 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~V~d~~~~  251 (336)
                      +.|+|+|++|++|+..+.. ..||||++.+.     ...++|++++++.+|.|||+|.|.+...  ...|.|+|||++.+
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999987766 78999999995     2578999999999999999999998653  46799999999998


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL  297 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~  297 (336)
                      +.+++||++.++|.++...             ....||+|.++...
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-------------~~~~w~~L~~~~~~  125 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-------------PVDGWYKLLNQEEG  125 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-------------ccCceEECcCcccc
Confidence            8999999999999998521             45679987654443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.63  E-value=7.9e-16  Score=126.84  Aligned_cols=88  Identities=30%  Similarity=0.486  Sum_probs=77.5

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++.  +   .+++|++++++.||.|+|+|.|.+..   ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            56899999999999998876 89999999983  2   25689999999999999999999865   3456889999999


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 019768          250 TFSADDIMGEAEIDIQP  266 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~  266 (336)
                      .++++++||++.+++..
T Consensus        94 ~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          94 RVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCccEEEEEECCcC
Confidence            99999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.63  E-value=8.6e-16  Score=125.20  Aligned_cols=94  Identities=15%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             ceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CC--eEEEeeeeCCCC-CceeeceeeecccCC--CCceEEE
Q 019768          174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQ--QTVQTTIVKSNL-NPVWNEELMLSVPQE--YGPVKLE  244 (336)
Q Consensus       174 g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~--~~~rT~~~~~t~-nP~W~e~f~f~v~~~--~~~L~v~  244 (336)
                      ......|.|+|.|++|+||+..... ..||||++++   +.  .+++|+++++++ +|+|||.|.|+++..  .-.|.|+
T Consensus         8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~   87 (135)
T cd08692           8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK   87 (135)
T ss_pred             eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence            4566789999999999999987444 6799999998   22  467999999995 699999999999762  3457889


Q ss_pred             EEecCCCCCCCeeEEEEEeCccc
Q 019768          245 VFDHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      |||++..+++++||++.+..+..
T Consensus        88 v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          88 LYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             EEeCCCCcCCceEEEEEECCccC
Confidence            99999999999999999998763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.62  E-value=9.3e-16  Score=167.63  Aligned_cols=121  Identities=21%  Similarity=0.406  Sum_probs=100.6

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF  251 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~  251 (336)
                      |....|.|+|+|++|+||. .++..+||||++.++++ ++||++++++.||+|||.|+|.+..  ....|.|+|||+|.+
T Consensus      1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            4456799999999999998 55568999999999966 7899999999999999999977655  447899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccce---EEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGE---LELE  328 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~---i~l~  328 (336)
                      + ++.+|.+.|+|.++..            +..+.+||+|.+                        ++.+.|+   |+++
T Consensus      2054 ~-kd~~G~~~i~l~~vv~------------~~~~~~~~~L~~------------------------~~~k~G~~~~~~~e 2096 (2102)
T PLN03200       2054 G-KSSLGKVTIQIDRVVM------------EGTYSGEYSLNP------------------------ESNKDGSSRTLEIE 2096 (2102)
T ss_pred             C-CCCCceEEEEHHHHhc------------CceeeeeeecCc------------------------ccccCCCcceEEEE
Confidence            5 4599999999999863            345667876432                        4467898   9999


Q ss_pred             EEEEe
Q 019768          329 LEWMP  333 (336)
Q Consensus       329 l~~~~  333 (336)
                      |+|-+
T Consensus      2097 ~~w~~ 2101 (2102)
T PLN03200       2097 FQWSN 2101 (2102)
T ss_pred             EEecC
Confidence            99964

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.62  E-value=3.1e-15  Score=121.38  Aligned_cols=88  Identities=32%  Similarity=0.561  Sum_probs=78.5

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEECCeE--EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~--~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~  256 (336)
                      +|+|.|++|++|+..+.. .+||||++++++..  .+|+++++++||.|||.|.|.+.. ....|.|+|||++.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999998876 89999999998765  478889999999999999998754 45689999999999999999


Q ss_pred             eEEEEEeCcccc
Q 019768          257 MGEAEIDIQPLL  268 (336)
Q Consensus       257 iG~~~i~l~~l~  268 (336)
                      ||++.++|.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999998875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.62  E-value=1.3e-15  Score=125.51  Aligned_cols=90  Identities=30%  Similarity=0.504  Sum_probs=78.2

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~  248 (336)
                      ..|.|.|+|++|++|+..+.. .+||||++++.  +   .+++|++++++.||.|||.|.|.++.   ....|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            357899999999999988766 89999999982  2   35689999999999999999999864   245799999999


Q ss_pred             CCCCCCCeeEEEEEeCccc
Q 019768          249 DTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l  267 (336)
                      +.++++++||++.+++.+.
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.62  E-value=1.2e-14  Score=118.16  Aligned_cols=89  Identities=28%  Similarity=0.503  Sum_probs=77.2

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE  259 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~  259 (336)
                      .|.|+|++|+.+.......+||||+++++++ ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~   81 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE   81 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence            5899999998444443338999999999877 7899999999999999999999864 4689999999999999999999


Q ss_pred             EEEeCcccccc
Q 019768          260 AEIDIQPLLTS  270 (336)
Q Consensus       260 ~~i~l~~l~~~  270 (336)
                      +.++|.++...
T Consensus        82 ~~i~l~~l~~~   92 (125)
T cd04021          82 ASLDLSDILKN   92 (125)
T ss_pred             EEEEHHHhHhh
Confidence            99999998754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.61  E-value=6.2e-15  Score=117.72  Aligned_cols=87  Identities=39%  Similarity=0.616  Sum_probs=77.9

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeE
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      |+|.|++|++|+..+.. .+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57899999999988765 789999999965 45799999999999999999999876 4577999999999988999999


Q ss_pred             EEEEeCcccc
Q 019768          259 EAEIDIQPLL  268 (336)
Q Consensus       259 ~~~i~l~~l~  268 (336)
                      ++.+++.++.
T Consensus        81 ~~~~~l~~l~   90 (115)
T cd04040          81 SAYIDLSDLE   90 (115)
T ss_pred             EEEEEHHHcC
Confidence            9999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.61  E-value=2e-15  Score=124.70  Aligned_cols=91  Identities=22%  Similarity=0.387  Sum_probs=79.3

Q ss_pred             EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEE
Q 019768          177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVF  246 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~  246 (336)
                      ...+.|.|+|++|+||+..+.. .+||||++++..      .+++|++++++.||+|||+|.|.++.   ....|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            3468899999999999998876 889999999832      24699999999999999999999975   4468999999


Q ss_pred             ecCCCCCCCeeEEEEEeCccc
Q 019768          247 DHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      |++.++++++||++.+++...
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCC
Confidence            999999999999999988654

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.60  E-value=3.2e-15  Score=122.84  Aligned_cols=89  Identities=29%  Similarity=0.496  Sum_probs=77.1

Q ss_pred             EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ...|.|+|+|++|++|+..+.. .+||||++++..     ..++|+++++++||.|+|.|.|.+..   ....|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            3468899999999999998876 899999999832     35689999999999999999999864   22468999999


Q ss_pred             cCCCCCCCeeEEEEEeCc
Q 019768          248 HDTFSADDIMGEAEIDIQ  265 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~  265 (336)
                      ++.++++++||.+.+++.
T Consensus        91 ~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          91 YDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCCCCceeEEEEECCC
Confidence            999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.5e-14  Score=139.99  Aligned_cols=103  Identities=30%  Similarity=0.484  Sum_probs=87.3

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      ...|+|+|++|++|+..+.. .+||||++++..   .+.+|++.++++||+|||+|.|.|..   ....|.+.|||+|+|
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf  245 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF  245 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence            37799999999999999954 799999999943   56799999999999999999999765   457899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++|++||++.++|..+...            .....|+++..
T Consensus       246 sr~~~iGev~~~l~~~~~~------------~~~~~w~~l~~  275 (421)
T KOG1028|consen  246 SRHDFIGEVILPLGEVDLL------------STTLFWKDLQP  275 (421)
T ss_pred             ccccEEEEEEecCcccccc------------ccceeeecccc
Confidence            9999999999998887432            12556887544

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.56  E-value=5.7e-14  Score=114.14  Aligned_cols=87  Identities=32%  Similarity=0.555  Sum_probs=75.2

Q ss_pred             EEEEEEEeeeecccCC--CC-CCCcEEEEEE------CCeEEEeeeeCCCC-CceeeceeeecccC-CCCceEEEEEecC
Q 019768          181 LLKVKVVKGINLAIRD--MM-SSDPYVVLRL------GQQTVQTTIVKSNL-NPVWNEELMLSVPQ-EYGPVKLEVFDHD  249 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~--~~-~~dPyv~i~l------~~~~~rT~~~~~t~-nP~W~e~f~f~v~~-~~~~L~v~V~d~~  249 (336)
                      .|+|+|++|++|+..+  .. ..||||++++      .....+|+++.++. ||.|+|+|.|.+.. ....|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            5899999999999887  23 8899999999      34568999988875 99999999999865 3356899999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .. ++++||.+.++|.++.
T Consensus        83 ~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhc
Confidence            88 8999999999999884

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.56  E-value=1.5e-14  Score=119.15  Aligned_cols=88  Identities=30%  Similarity=0.524  Sum_probs=75.2

Q ss_pred             EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768          177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD  247 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d  247 (336)
                      ...|.|+|.|++|++|+..+.. .+||||++++.  .   .+++|++++++.||.|||+|.|.+..   ....|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            3458899999999999998876 89999999972  2   35789999999999999999999864   23468999999


Q ss_pred             cCCCCCCCeeEEEEEeC
Q 019768          248 HDTFSADDIMGEAEIDI  264 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l  264 (336)
                      ++..+++++||++.+..
T Consensus        91 ~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCCCCCCcEEEEEEEcC
Confidence            99999999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.56  E-value=1e-14  Score=120.32  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~  250 (336)
                      .+.|.|.|++|+||+..+...+||||++.+..     .+++|++++++.||+|||.|.|.++.   ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~   93 (137)
T cd08409          14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG   93 (137)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence            57899999999999988844899999999832     35689999999999999999999965   34679999999999


Q ss_pred             CCCCCeeEEEEEeCccc
Q 019768          251 FSADDIMGEAEIDIQPL  267 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l  267 (336)
                      ++++++||++.+.....
T Consensus        94 ~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          94 VRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             CCCcceEEEEEECCccc
Confidence            99999999999986443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.56  E-value=2.2e-14  Score=113.92  Aligned_cols=80  Identities=24%  Similarity=0.498  Sum_probs=69.1

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEec-------C
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-------D  249 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~-------~  249 (336)
                      |.|+|.+|++|+.    .+||||++.++.     ...+|+++++|+||+|||+|.|.+.. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            6899999999963    469999998843     45799999999999999999999975 67999999998       5


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 019768          250 TFSADDIMGEAEIDIQP  266 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~  266 (336)
                      ..+.|+++|.+.+.|+.
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            66789999998888754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.55  E-value=2.2e-14  Score=115.65  Aligned_cols=85  Identities=29%  Similarity=0.491  Sum_probs=74.0

Q ss_pred             EEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC----C
Q 019768          185 KVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----F  251 (336)
Q Consensus       185 ~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~----~  251 (336)
                      ..++|++|+..+.. .+||||++++...       .++|+++++++||+|+|+|.|.+.. ....|.|+|||++.    +
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            45889999988876 8999999999554       3799999999999999999998643 45679999999997    7


Q ss_pred             CCCCeeEEEEEeCccccc
Q 019768          252 SADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~  269 (336)
                      +++++||++.+++.+++.
T Consensus        85 ~~~d~iG~~~i~l~~l~~  102 (120)
T cd04048          85 SDHDFLGEAECTLGEIVS  102 (120)
T ss_pred             CCCcEEEEEEEEHHHHhc
Confidence            899999999999999964

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.54  E-value=1.4e-14  Score=118.64  Aligned_cols=88  Identities=33%  Similarity=0.487  Sum_probs=78.2

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+.. ..||||++++..     ..++|+++.++.+|.|||+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            47899999999999988765 889999999843     256999999999999999999998763   468999999999


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 019768          250 TFSADDIMGEAEIDIQP  266 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~  266 (336)
                      .++++++||.+.+++.+
T Consensus        93 ~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCceeEEEEECCCC
Confidence            98899999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.52  E-value=8.2e-14  Score=112.69  Aligned_cols=92  Identities=29%  Similarity=0.466  Sum_probs=78.5

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d  247 (336)
                      ..+.|+|+|++|++|+..+.. .+||||++.+.     ....+|++++++.||.|||.|.|. +..   ....|.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            357899999999999988776 88999999982     246899999999999999999996 332   24679999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      ++.+ .+++||.+.++|.++..+
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCC
Confidence            9988 889999999999998643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.49  E-value=1.1e-13  Score=109.63  Aligned_cols=85  Identities=29%  Similarity=0.563  Sum_probs=72.5

Q ss_pred             EEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC-----CCCceEEEEEecCC
Q 019768          183 KVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDT  250 (336)
Q Consensus       183 ~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V~d~~~  250 (336)
                      .+..++|++|+..+.. .+||||++++..      ..++|+++++++||+|| .|.|.+..     ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            3456799999998876 899999999843      24799999999999999 68887532     25689999999999


Q ss_pred             CCCCCeeEEEEEeCcccc
Q 019768          251 FSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~  268 (336)
                      +++|++||++.+++.++.
T Consensus        82 ~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          82 SGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCcEEEEEEEEHHHHh
Confidence            999999999999999986

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=9e-14  Score=134.69  Aligned_cols=130  Identities=24%  Similarity=0.487  Sum_probs=108.1

Q ss_pred             ccceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768          172 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  250 (336)
Q Consensus       172 ~~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~  250 (336)
                      ..|...+...++++|+.|++|..+|.. ++||||...+++.+.||+++...+||+|||.|+|.+.+....+++.|||.|.
T Consensus       287 legsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~  366 (1283)
T KOG1011|consen  287 LEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDN  366 (1283)
T ss_pred             hccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcc
Confidence            367788999999999999999999987 9999999999999999999999999999999999999888899999999873


Q ss_pred             C-----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecc
Q 019768          251 F-----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQN  319 (336)
Q Consensus       251 ~-----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~  319 (336)
                      -           ..|||+|++.|.+..+.              ..++-||.|     ...+.-...+|.+...+.+.+++
T Consensus       367 dlksklrqkl~resddflgqtvievrtls--------------gemdvwynl-----ekrtdksavsgairlhisveikg  427 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS--------------GEMDVWYNL-----EKRTDKSAVSGAIRLHISVEIKG  427 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEecc--------------cchhhhcch-----hhccchhhccceEEEEEEEEEcC
Confidence            2           46899999999988873              346789974     33444455567666666666554


Q ss_pred             c
Q 019768          320 V  320 (336)
Q Consensus       320 ~  320 (336)
                      .
T Consensus       428 e  428 (1283)
T KOG1011|consen  428 E  428 (1283)
T ss_pred             c
Confidence            3

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.45  E-value=3.6e-13  Score=100.65  Aligned_cols=80  Identities=33%  Similarity=0.640  Sum_probs=71.2

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~  256 (336)
                      |+|+|++|++|+..+.. ..|||+++.+..   ..++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999997765 889999999966   67999999999999999999999654 44569999999999988999


Q ss_pred             eEEEE
Q 019768          257 MGEAE  261 (336)
Q Consensus       257 iG~~~  261 (336)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.40  E-value=4.1e-13  Score=131.62  Aligned_cols=101  Identities=27%  Similarity=0.438  Sum_probs=88.8

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      ..|.|.|.+|+||+..+.. ..||||.|.++.. ..||.++.+++.|-|.|+|+|.++.....|.|.|||+| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            3589999999999999887 8999999999775 56999999999999999999999998899999999999 8999999


Q ss_pred             EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      |.+.|.-++|...            .-.+.||.|+.
T Consensus        84 GKvai~re~l~~~------------~~~d~W~~L~~  107 (800)
T KOG2059|consen   84 GKVAIKREDLHMY------------PGKDTWFSLQP  107 (800)
T ss_pred             ceeeeeHHHHhhC------------CCCccceeccc
Confidence            9999987777432            24678998655

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.30  E-value=1.4e-11  Score=100.44  Aligned_cols=89  Identities=27%  Similarity=0.341  Sum_probs=74.9

Q ss_pred             EEEEEEeeeecccCCC--C---CCCcEEEEEECC---eEEEeeeeCCCCC--ceeeceeeecccC---------------
Q 019768          182 LKVKVVKGINLAIRDM--M---SSDPYVVLRLGQ---QTVQTTIVKSNLN--PVWNEELMLSVPQ---------------  236 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~--~---~~dPyv~i~l~~---~~~rT~~~~~t~n--P~W~e~f~f~v~~---------------  236 (336)
                      |+|.|.+|++++..+.  .   .+||||++.+..   .+++|.|+.+++|  |.||++|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7999999999665433  2   489999999954   5689999999999  9999999988643               


Q ss_pred             ---------CCCceEEEEEecCCCCCCCeeEEEEEeCcccccc
Q 019768          237 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       237 ---------~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                               ....|.|+|||+|.+++|++||.+.++|..+..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence                     1246899999999999999999999999988654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.30  E-value=2.3e-11  Score=93.04  Aligned_cols=89  Identities=39%  Similarity=0.712  Sum_probs=79.0

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECCe---EEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCe
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ---TVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~---~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~  256 (336)
                      |.|.|++|++|...... ..+|||++.+...   ..+|+++.++.+|.|+|.|.|.+... ...|.|+|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            78999999999887764 7899999999764   78999999999999999999999775 7889999999998777899


Q ss_pred             eEEEEEeCcccccc
Q 019768          257 MGEAEIDIQPLLTS  270 (336)
Q Consensus       257 iG~~~i~l~~l~~~  270 (336)
                      +|.+.+++.++..+
T Consensus        82 ~G~~~~~l~~~~~~   95 (101)
T smart00239       82 IGQVTIPLSDLLLG   95 (101)
T ss_pred             eEEEEEEHHHcccC
Confidence            99999999888644

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02270 phospholipase D alpha

Probab=99.29  E-value=3.2e-11  Score=122.31  Aligned_cols=127  Identities=18%  Similarity=0.345  Sum_probs=101.6

Q ss_pred             EEEEEEEEEEEeeeecccCC-----------------C--CCCCcEEEEEECCeEE-EeeeeCCC-CCceeeceeeeccc
Q 019768          177 EFIGLLKVKVVKGINLAIRD-----------------M--MSSDPYVVLRLGQQTV-QTTIVKSN-LNPVWNEELMLSVP  235 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~-----------------~--~~~dPyv~i~l~~~~~-rT~~~~~t-~nP~W~e~f~f~v~  235 (336)
                      -.-|.|.|+|.+|++|+..+                 .  ..+||||.+.+++.+. ||+++.+. .||+|+|.|.+++.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            35799999999999998531                 1  1569999999988765 99999884 69999999999998


Q ss_pred             CCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEE
Q 019768          236 QEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISL  315 (336)
Q Consensus       236 ~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l  315 (336)
                      .....+.|.|.|.+.++. .+||.+.||+.+++.            +..+++||++-+           .+|+.      
T Consensus        85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~------------g~~i~~~~~~~~-----------~~~~p------  134 (808)
T PLN02270         85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILD------------GEEVDRWVEILD-----------NDKNP------  134 (808)
T ss_pred             cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcC------------CCccccEEeccC-----------CCCCc------
Confidence            877899999999999865 699999999999864            446899998544           23332      


Q ss_pred             EecccccceEEEEEEEEeCCC
Q 019768          316 KLQNVESGELELELEWMPLDQ  336 (336)
Q Consensus       316 ~l~~~~~G~i~l~l~~~~~~~  336 (336)
                         ....-+|+++|+|+|+.+
T Consensus       135 ---~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270        135 ---IHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             ---CCCCCEEEEEEEEEEccc
Confidence               112348999999999753

>cd00030 C2 C2 domain

Probab=99.28  E-value=3.2e-11  Score=91.78  Aligned_cols=87  Identities=46%  Similarity=0.786  Sum_probs=77.9

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeE
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      |.|.|++|++|...... ..+|||.+.+.. ...+|++..++.+|.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            57899999999875554 789999999987 88899999999999999999999987 5678999999999887789999


Q ss_pred             EEEEeCcccc
Q 019768          259 EAEIDIQPLL  268 (336)
Q Consensus       259 ~~~i~l~~l~  268 (336)
                      .+.+++..+.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999985

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.18  E-value=2.9e-10  Score=111.18  Aligned_cols=93  Identities=23%  Similarity=0.493  Sum_probs=75.9

Q ss_pred             EEEEEEEEEeeeecccC-----CCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEE
Q 019768          179 IGLLKVKVVKGINLAIR-----DMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVF  246 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~-----~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~  246 (336)
                      ...|+|+|+.|++++..     +.. ..||||+|.+.     ...++|.+..++.||+|||+|.|.+.. +-..|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            35799999999987521     222 67999999983     345688888889999999999999865 4456899999


Q ss_pred             ecCCCCCCCeeEEEEEeCccccccc
Q 019768          247 DHDTFSADDIMGEAEIDIQPLLTSA  271 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~~~~  271 (336)
                      |+|..+.++|+|++.+|+..|..+.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy  512 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI  512 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc
Confidence            9999888999999999999997664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.17  E-value=1.5e-10  Score=119.51  Aligned_cols=95  Identities=27%  Similarity=0.560  Sum_probs=83.8

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCC---CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMM---SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  250 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~---~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~  250 (336)
                      ....+|+|.|.|..|++|...+..   ..|||+++.+... .-+|+++++++||+|||+|.+.+..-.+.|.|+|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            345789999999999999998832   8999999998544 349999999999999999999998877899999999998


Q ss_pred             CCCCCeeEEEEEeCccccc
Q 019768          251 FSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~  269 (336)
                      +..|+.+|.+.++|..|..
T Consensus       511 ~~sd~vvG~~~l~L~~L~~  529 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQ  529 (1227)
T ss_pred             cCCcceeeeEEechHHhhh
Confidence            8999999999999988753

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=8.7e-11  Score=113.95  Aligned_cols=92  Identities=36%  Similarity=0.590  Sum_probs=78.8

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CC---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEE
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEV  245 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V  245 (336)
                      .+...|.|+|.|++|++|...+.. ..||||++++  +.   .+++|.+.++++||+|||+|.|.++.   ....|.|+|
T Consensus       293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V  372 (421)
T KOG1028|consen  293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV  372 (421)
T ss_pred             eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence            344569999999999999999987 8899999998  22   35689999999999999999999875   335789999


Q ss_pred             EecCCCCCCCeeEEEEEeCcc
Q 019768          246 FDHDTFSADDIMGEAEIDIQP  266 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~  266 (336)
                      ||++.++.+++||.+.+....
T Consensus       373 ~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  373 WDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             EEcccccccceeeEEEecCCC
Confidence            999999999999988876654

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.15  E-value=1.3e-10  Score=111.98  Aligned_cols=130  Identities=30%  Similarity=0.510  Sum_probs=104.4

Q ss_pred             EEEEEEEEEeeeecccCCCC--CCCcEEEEEECCeEEEeeeeCCCCCceee-ceeeecccC---CCCceEEEEEecCCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQ---EYGPVKLEVFDHDTFS  252 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~~~~rT~~~~~t~nP~W~-e~f~f~v~~---~~~~L~v~V~d~~~~~  252 (336)
                      .|.|.|.|..|++|+.+|..  ..|.||.+.++...++|.+..+++||.|| +.|.|.+.+   ..++|.|.+.|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            37789999999999999987  78999999999999999999999999999 689999876   5678999999999999


Q ss_pred             CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEe
Q 019768          253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKL  317 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l  317 (336)
                      .+|-||.+.|+++.|........  ---++..+.+|||..|       .+..+.|++.--+++.|
T Consensus        82 andaigkv~i~idpl~~e~aaqa--vhgkgtvisgw~pifd-------tihgirgeinvivkvdl  137 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQA--VHGKGTVISGWFPIFD-------TIHGIRGEINVIVKVDL  137 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhh--hcCCceEEeeeeecce-------ecccccceeEEEEEEee
Confidence            99999999999999864321110  0124677899999766       34445566555555554

>PLN02952 phosphoinositide phospholipase C

Probab=99.11  E-value=6.8e-10  Score=110.68  Aligned_cols=92  Identities=27%  Similarity=0.411  Sum_probs=75.5

Q ss_pred             EEEEEEEEEeeeecccC------CCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768          179 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  245 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~------~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V  245 (336)
                      ...|+|.|+.|++++..      +.. ..||||++.+     +..+++|+++.++.||+|||+|.|.+.. +-..|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            45799999999887531      111 3599999998     2456799999999999999999998865 345689999


Q ss_pred             EecCCCCCCCeeEEEEEeCcccccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      ||+|..+.++|+|++.+||..|..+
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~G  573 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPG  573 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCC
Confidence            9999988899999999999999755

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.08  E-value=2.4e-10  Score=118.04  Aligned_cols=98  Identities=39%  Similarity=0.565  Sum_probs=89.0

Q ss_pred             cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecC
Q 019768          173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHD  249 (336)
Q Consensus       173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~  249 (336)
                      ..|++..|-|+|.+..|.||+..+.. .+||||++.+... .++|+++++|+||+|||.|.+++.. ....+.+.|+|||
T Consensus      1033 ~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038        1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred             ceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence            45788899999999999999999988 6999999999665 6899999999999999999999985 5678999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccc
Q 019768          250 TFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      ...+++.||.+.++|..+..+
T Consensus      1113 ~~~knd~lg~~~idL~~l~~~ 1133 (1227)
T COG5038        1113 SGEKNDLLGTAEIDLSKLEPG 1133 (1227)
T ss_pred             cCCCccccccccccHhhcCcC
Confidence            999999999999999998644

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.97  E-value=2.1e-09  Score=107.36  Aligned_cols=93  Identities=25%  Similarity=0.463  Sum_probs=76.0

Q ss_pred             EEEEEEEeeeecccC-CCC----CCCcEEEEEECC-----eEEEee-eeCCCCCceeeceeeecccC-CCCceEEEEEec
Q 019768          181 LLKVKVVKGINLAIR-DMM----SSDPYVVLRLGQ-----QTVQTT-IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDH  248 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~-~~~----~~dPyv~i~l~~-----~~~rT~-~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~  248 (336)
                      +|+|.|+.|+++... +..    ..||||.+.+-+     ...+|+ +..++.||.|+|+|+|.+.. +-..|.|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            799999999966542 222    579999999833     456899 55569999999999999865 446789999999


Q ss_pred             CCCCCCCeeEEEEEeCccccccccc
Q 019768          249 DTFSADDIMGEAEIDIQPLLTSALA  273 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~~~~  273 (336)
                      |..++|||+|+..+|+..|..+.++
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            9999999999999999999876544

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.96  E-value=1.9e-09  Score=107.38  Aligned_cols=95  Identities=25%  Similarity=0.410  Sum_probs=77.3

Q ss_pred             EEEEEEEEEeeeecccC------CCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768          179 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  245 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~------~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V  245 (336)
                      ..+|.|+|+.|++++..      +.. ..||||+|.+     +..+.+|++..++.||+|||+|.|.+.- +-..|.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            35799999999986421      112 4799999998     2345789998899999999999998765 446789999


Q ss_pred             EecCCCCCCCeeEEEEEeCccccccccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLTSALA  273 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~~  273 (336)
                      +|+|..+.|+|+|+..+|+..|..+.+.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~  575 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIHA  575 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccce
Confidence            9999988999999999999999876543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.92  E-value=4.6e-09  Score=104.47  Aligned_cols=94  Identities=20%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             EEEEEEEEEeeeecc----cCC--CC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768          179 IGLLKVKVVKGINLA----IRD--MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV  245 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~----~~~--~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V  245 (336)
                      ...|+|+|+.|.+++    ...  .. ..||||+|.+.     ..+.+|+++.++.||+|+|+|.|.+.. +-..|.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998753    111  11 57999999983     356799999999999999999998755 446789999


Q ss_pred             EecCCCCCCCeeEEEEEeCcccccccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLTSAL  272 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~  272 (336)
                      +|+|..+.++|+|+..+|+..|..+.+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR  557 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIR  557 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccc
Confidence            999988889999999999999987654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.89  E-value=4.5e-09  Score=81.10  Aligned_cols=86  Identities=14%  Similarity=0.260  Sum_probs=71.8

Q ss_pred             EEEEEEeeeecccCC---CC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCe
Q 019768          182 LKVKVVKGINLAIRD---MM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       182 L~V~v~~a~~L~~~~---~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~  256 (336)
                      |+|+|..++++...+   +. .+||||.+.++.. +.||++   +.||.|||.|.|++. ....+.|.|||+.. ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            689999999998877   34 7899999999886 778887   489999999999995 46789999999865 35568


Q ss_pred             eEEEEEeCcccccccc
Q 019768          257 MGEAEIDIQPLLTSAL  272 (336)
Q Consensus       257 iG~~~i~l~~l~~~~~  272 (336)
                      ||..-+.|+++.+.-+
T Consensus        76 i~llW~~~sdi~Ee~R   91 (109)
T cd08689          76 VGLLWLRLSDIAEEIR   91 (109)
T ss_pred             eeeehhhHHHHHHHHH
Confidence            9999999999886543

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=98.85  E-value=1e-08  Score=101.73  Aligned_cols=94  Identities=20%  Similarity=0.336  Sum_probs=76.4

Q ss_pred             EEEEEEEEEeeeeccc---CC---CC-CCCcEEEEEE-----CCeEEEeeeeCCCCCcee-eceeeecccC-CCCceEEE
Q 019768          179 IGLLKVKVVKGINLAI---RD---MM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVW-NEELMLSVPQ-EYGPVKLE  244 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~---~~---~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W-~e~f~f~v~~-~~~~L~v~  244 (336)
                      ...|+|+|+.|++|+.   .+   .. ..||||++.+     +..+++|+++.++.||+| +|+|.|.+.. +-..|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3579999999998731   11   12 4799999998     335679999999999999 9999999865 34678999


Q ss_pred             EEecCCCCCCCeeEEEEEeCcccccccc
Q 019768          245 VFDHDTFSADDIMGEAEIDIQPLLTSAL  272 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~~l~~~~~  272 (336)
                      |+|+|..+.++|+|+..+|+..|..+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR  537 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVR  537 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence            9999988899999999999999976653

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.81  E-value=1.3e-09  Score=107.47  Aligned_cols=89  Identities=33%  Similarity=0.517  Sum_probs=79.3

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccC-----CCCceEEEEE
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVF  246 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V~  246 (336)
                      -.|.|.|+.|+++.+.|.+ .+||||+|.++..       .++|+|+.+|+||+|+|.|+|.|+.     +...|.|+|+
T Consensus       947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred             cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence            4588899999999999987 8999999999764       3599999999999999999999976     2456899999


Q ss_pred             ecCCCCCCCeeEEEEEeCcccc
Q 019768          247 DHDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      |+|-++.+||-|++.+.|.++.
T Consensus      1027 DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             ccceecccccchHHHHhhCCCC
Confidence            9999999999999999998874

>PLN02352 phospholipase D epsilon

Probab=98.77  E-value=5.5e-08  Score=98.87  Aligned_cols=118  Identities=18%  Similarity=0.321  Sum_probs=88.5

Q ss_pred             EEEEEEEEEEeeeecccCCC-----C-CCCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCC-CceEEEEEecC
Q 019768          178 FIGLLKVKVVKGINLAIRDM-----M-SSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEY-GPVKLEVFDHD  249 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~-----~-~~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~V~d~~  249 (336)
                      .-|.|.++|.+|+-+...-.     . ..||||.+.+++.+. ||   .+..||+|+|.|.+++.... ..+.|.|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            46899999999984433211     1 339999999988665 77   55669999999999998765 679999987  


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEE
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL  329 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l  329 (336)
                         ...+||.+.||+.+++.+           ...+++||++-+           .+|+.          ....+|++++
T Consensus        83 ---~~~~ig~~~~p~~~~~~g-----------~~~~~~~~~~~~-----------~~~~p----------~~~~~~~~~~  127 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTE-----------ASFINGFFPLIM-----------ENGKP----------NPELKLRFML  127 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCC-----------CcccceEEEccc-----------CCCCC----------CCCCEEEEEE
Confidence               357999999999998643           234899998544           23332          1225899999


Q ss_pred             EEEeCC
Q 019768          330 EWMPLD  335 (336)
Q Consensus       330 ~~~~~~  335 (336)
                      +|+|+.
T Consensus       128 ~~~~~~  133 (758)
T PLN02352        128 WFRPAE  133 (758)
T ss_pred             EEEEhh
Confidence            999975

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.74  E-value=3.3e-08  Score=98.80  Aligned_cols=92  Identities=22%  Similarity=0.418  Sum_probs=77.5

Q ss_pred             EEEEEEEEeeeecccCCCCCCCcEEEEEEC-----CeE-EEeeeeCCCCCceee-ceeeecccC-CCCceEEEEEecCCC
Q 019768          180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQT-VQTTIVKSNLNPVWN-EELMLSVPQ-EYGPVKLEVFDHDTF  251 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-----~~~-~rT~~~~~t~nP~W~-e~f~f~v~~-~~~~L~v~V~d~~~~  251 (336)
                      -.|.|.|+.|+.|+..+.+...|||.|.+-     ..+ ++|.++.+++||+|| |.|+|.|.. +-..|.|.|+|.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            458899999999997776667799999983     233 456677789999999 999999977 456789999999999


Q ss_pred             CCCCeeEEEEEeCccccccc
Q 019768          252 SADDIMGEAEIDIQPLLTSA  271 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~  271 (336)
                      +...|||++..|+..+..+-
T Consensus      1145 s~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred             CCcceeeeeecchhhhhccc
Confidence            99899999999999987654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.67  E-value=4.5e-09  Score=103.78  Aligned_cols=118  Identities=25%  Similarity=0.517  Sum_probs=89.1

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEECC-------------------------------eEEEeeeeCCCCCceeece
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------------------------QTVQTTIVKSNLNPVWNEE  229 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-------------------------------~~~rT~~~~~t~nP~W~e~  229 (336)
                      +.|.+.+|++|..++.. -+|||+.+.+-.                               -.+-|.+.++|+||+|+|.
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence            67778889999888876 789999887610                               0124678888999999999


Q ss_pred             eeecccC-CCCceEEEEEecCCC---------------------------------CC---CCeeEEEEEeCcccccccc
Q 019768          230 LMLSVPQ-EYGPVKLEVFDHDTF---------------------------------SA---DDIMGEAEIDIQPLLTSAL  272 (336)
Q Consensus       230 f~f~v~~-~~~~L~v~V~d~~~~---------------------------------~~---dd~iG~~~i~l~~l~~~~~  272 (336)
                      |.|.|.+ ....+.+.|||+|.-                                 +.   |||+|.+.|||.++...  
T Consensus       196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~--  273 (1103)
T KOG1328|consen  196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD--  273 (1103)
T ss_pred             eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc--
Confidence            9999987 567899999998821                                 23   89999999999998533  


Q ss_pred             cCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEe
Q 019768          273 AFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKL  317 (336)
Q Consensus       273 ~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l  317 (336)
                                 -++.||.|.     ..+.-.-..|.+...+||--
T Consensus       274 -----------Gld~WFkLe-----pRS~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  274 -----------GLDQWFKLE-----PRSDKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             -----------hHHHHhccC-----cccccccccceEEEEEEEee
Confidence                       378999753     34445555677766666644

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.40  E-value=2e-07  Score=96.55  Aligned_cols=103  Identities=22%  Similarity=0.367  Sum_probs=82.8

Q ss_pred             EEEEEEEEEeeeeccc-CCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAI-RDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~-~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~  248 (336)
                      .|+|+|.|..|++|+- .|...+||||++++..     .+.||+++++|.||.|||...+. ++.   ....|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            4999999999999954 4444899999999943     35699999999999999998877 322   236799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +.+..+.++|.+.|+|.++...            ....+||+|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~------------kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL------------KESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchh------------hhhcceeeccc
Confidence            9998899999999999887432            22347998643

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.37  E-value=2.6e-07  Score=94.49  Aligned_cols=89  Identities=31%  Similarity=0.465  Sum_probs=78.4

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeE--EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSAD  254 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~--~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~d  254 (336)
                      .-.++|+|++|.+|.+.|.. ..|||+.+.+|++.  -++..+.+|+||+|.+.|.+.... ....|.++|||+|.++.|
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            35678999999999999987 99999999999887  477889999999999999887654 346789999999999999


Q ss_pred             CeeEEEEEeCccc
Q 019768          255 DIMGEAEIDIQPL  267 (336)
Q Consensus       255 d~iG~~~i~l~~l  267 (336)
                      +.||+..++|+.-
T Consensus       692 ~~iget~iDLEnR  704 (1105)
T KOG1326|consen  692 EKIGETTIDLENR  704 (1105)
T ss_pred             chhhceehhhhhc
Confidence            9999999999764

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.27  E-value=1.1e-06  Score=87.24  Aligned_cols=98  Identities=17%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             EEEEeeeecccCCCCCCCcEEEEEECCe----EEEeeeeCCCCCceeeceeeecccCC----------------CCceEE
Q 019768          184 VKVVKGINLAIRDMMSSDPYVVLRLGQQ----TVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPVKL  243 (336)
Q Consensus       184 V~v~~a~~L~~~~~~~~dPyv~i~l~~~----~~rT~~~~~t~nP~W~e~f~f~v~~~----------------~~~L~v  243 (336)
                      ..++.++.+.+...+.+|||+++...+.    ..+|++.++|.+|.|+|.|.|.+...                ...|++
T Consensus       135 c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv  214 (800)
T KOG2059|consen  135 CHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRV  214 (800)
T ss_pred             hhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEE
Confidence            3344555555555557899999988543    35999999999999999999987543                235889


Q ss_pred             EEEe-cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          244 EVFD-HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       244 ~V~d-~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++|+ ++....++|+|++.+++..+..            ...-..||-|..
T Consensus       215 ~lW~~~~~~~~~~FlGevrv~v~~~~~------------~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  215 DLWNDLNLVINDVFLGEVRVPVDVLRQ------------KSSPAAWYYLQP  253 (800)
T ss_pred             eeccchhhhhhhhhceeEEeehhhhhh------------ccCccceEEEec
Confidence            9999 6666669999999999988752            223457997655

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.15  E-value=5.5e-06  Score=66.13  Aligned_cols=98  Identities=24%  Similarity=0.429  Sum_probs=71.5

Q ss_pred             EEEEEEeeeecccC-------C--C--C---CCCcEEEEEE----CCeEEEeeeeCCCCCceeeceeeecccC-------
Q 019768          182 LKVKVVKGINLAIR-------D--M--M---SSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-------  236 (336)
Q Consensus       182 L~V~v~~a~~L~~~-------~--~--~---~~dPyv~i~l----~~~~~rT~~~~~t~nP~W~e~f~f~v~~-------  236 (336)
                      |.|.|++|.+|+..       +  .  .   .-++|+++.+    ++...+|+++.++..|.|+..++|+++-       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            35667777777521       1  1  1   3589999986    4567899999999999999999998761       


Q ss_pred             ---------CCCceEEEEEecCCC----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeee
Q 019768          237 ---------EYGPVKLEVFDHDTF----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK  290 (336)
Q Consensus       237 ---------~~~~L~v~V~d~~~~----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~  290 (336)
                               +...+.++||+...-          .+|-+||.+.||+.+|+..           -.-+.+|||
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~-----------rsGitGW~p  142 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK-----------RSGITGWYP  142 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc-----------ccCcccccc
Confidence                     124688999997642          2345899999999999743           234678987

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=4.8e-06  Score=81.92  Aligned_cols=113  Identities=19%  Similarity=0.276  Sum_probs=91.6

Q ss_pred             EEEEEEEEeeeecccCCCCCCCcEEEEEE-C------CeEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEec
Q 019768          180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-G------QQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDH  248 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-~------~~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~  248 (336)
                      ..++|.|+.|.+|.-...+.--|||.+.+ |      +.++.|++..++..|.+||+|+|-+.++    .-.|.|.|-|+
T Consensus      1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            45889999999999877777789999987 2      2456889999999999999999998653    33588999998


Q ss_pred             CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceee
Q 019768          249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINI  304 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~  304 (336)
                      --...|..+|.+.++|.++...            ....-|+||..+.-..++.+.+
T Consensus      1205 CFAReDRvvGl~VlqL~~va~k------------GS~a~W~pLgrrihmDeTGLti 1248 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADK------------GSCACWVPLGRRIHMDETGLTI 1248 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhc------------CceeEeeeccccccccccchhH
Confidence            8777788999999999998643            2456799998888777766554

>PLN02964 phosphatidylserine decarboxylase

Probab=98.13  E-value=5e-06  Score=84.11  Aligned_cols=91  Identities=24%  Similarity=0.457  Sum_probs=76.7

Q ss_pred             ceeEEEEEEEEEEEeeeecccCCCCCCCcEE-EEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCC
Q 019768          174 GMVEFIGLLKVKVVKGINLAIRDMMSSDPYV-VLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF  251 (336)
Q Consensus       174 g~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv-~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~  251 (336)
                      .+..+.|.+.|++++|+    ++.  .|||. .+++|.+.+||.+.++|+||+||+...|.+.. +.....+.|||++.+
T Consensus        48 ~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (644)
T PLN02964         48 SAEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL  121 (644)
T ss_pred             ecccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence            45679999999999997    332  38865 56789999999999999999999998888865 445579999999999


Q ss_pred             CCCCeeEEEEEeCcccccc
Q 019768          252 SADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~  270 (336)
                      +.++++|.++++|..+...
T Consensus       122 s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CHHHhhhheeecHhhccHH
Confidence            9999999999988777643

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=1.7e-05  Score=72.55  Aligned_cols=87  Identities=31%  Similarity=0.367  Sum_probs=72.8

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~  248 (336)
                      ...-|.|+++.+..|...|.. .+||||..++..     .+++|.+.+++++|.|+++|.|.+.+   ....+.|.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            346689999999999999987 899999999843     35689999999999999999999876   345688999999


Q ss_pred             CCCCCCCeeEEEEEeC
Q 019768          249 DTFSADDIMGEAEIDI  264 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l  264 (336)
                      +.....+++|-...-+
T Consensus       311 ~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGG  326 (362)
T ss_pred             CCCcCccCCCcccccc
Confidence            9977889998755443

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=1.4e-05  Score=74.38  Aligned_cols=108  Identities=20%  Similarity=0.322  Sum_probs=86.9

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCC--CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-  246 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~-  246 (336)
                      ...-+|.|.|.|++|++|..+...  .++|||++++-.     .+.+|+...+|++|.+.+...|.-......|.+.|| 
T Consensus       264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g  343 (405)
T KOG2060|consen  264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG  343 (405)
T ss_pred             hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence            455679999999999999877655  789999999832     346899999999999999999988888889999999 


Q ss_pred             ecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      |+..+.++.|+|.+.+-+.+|-.+           ....-.||++..
T Consensus       344 dygRmd~k~fmg~aqi~l~eL~ls-----------~~~~igwyKlfg  379 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQIMLDELNLS-----------SSPVIGWYKLFG  379 (405)
T ss_pred             cccccchHHHhhHHHHHhhhhccc-----------cccceeeeeccC
Confidence            567777788999999988887432           234567987543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.60  E-value=6.6e-05  Score=77.40  Aligned_cols=130  Identities=21%  Similarity=0.351  Sum_probs=90.0

Q ss_pred             EEEEEEeeeecccCCCC-----CCCcEEEEEEC---CeEEEeeeeCCCC----CceeeceeeecccC-------------
Q 019768          182 LKVKVVKGINLAIRDMM-----SSDPYVVLRLG---QQTVQTTIVKSNL----NPVWNEELMLSVPQ-------------  236 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-----~~dPyv~i~l~---~~~~rT~~~~~t~----nP~W~e~f~f~v~~-------------  236 (336)
                      |+|.+..-.+....+..     ++|-||.=.+-   ..+++|.++++++    +-.|.-.|-|....             
T Consensus       848 lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~  927 (1105)
T KOG1326|consen  848 LRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYS  927 (1105)
T ss_pred             EEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhc
Confidence            66666555554443322     68999987763   3567888888754    44455444443211             


Q ss_pred             ---------CCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccC----------CCCCccCceeeceeeecCCcccc
Q 019768          237 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF----------GDPEMFGNMQIGKWLKSDDNALL  297 (336)
Q Consensus       237 ---------~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~----------~~~~~~~~~~~~~wf~l~~~~~~  297 (336)
                               ....|.|+|||.|.++.|+|+|..+++|+++..+.+.-          ....+++...+.+|+|+..    
T Consensus       928 ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a---- 1003 (1105)
T KOG1326|consen  928 WSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA---- 1003 (1105)
T ss_pred             cccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee----
Confidence                     01358999999999999999999999999988764433          2357789999999999544    


Q ss_pred             cccceeeecCeEEEEEEE
Q 019768          298 EDSTINIIDGKVKQKISL  315 (336)
Q Consensus       298 ~~~~~~~~~g~~~~~~~l  315 (336)
                      .++.-.+..|++..++.+
T Consensus      1004 ~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1004 EEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred             cCCCcceecceeeeehhh
Confidence            466777788888665554

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=1.2e-05  Score=73.63  Aligned_cols=90  Identities=23%  Similarity=0.395  Sum_probs=73.9

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeeccc--C--CCCceEEEEEecC
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP--Q--EYGPVKLEVFDHD  249 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~--~--~~~~L~v~V~d~~  249 (336)
                      -.+..++..|++|.+++.. ..|||+.+.+..     .+.+|++..+++||.|+|.......  .  ....+.+.|.|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            4578899999999999998 899999998844     3468899999999999987655432  2  3356788999999


Q ss_pred             CCCCCCeeEEEEEeCccccc
Q 019768          250 TFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~  269 (336)
                      .+..++++|+..+++..+..
T Consensus       173 ~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             ccccccCcccchhhhhccCh
Confidence            99999999999998888753

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.17  E-value=0.00089  Score=65.79  Aligned_cols=84  Identities=26%  Similarity=0.507  Sum_probs=67.6

Q ss_pred             EEEeeeecccCCCC-CCCcEEEEEEC--C----eEEEeeeeCCCCCceeeceeeeccc-----CCCCceEEEEEecCCCC
Q 019768          185 KVVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVP-----QEYGPVKLEVFDHDTFS  252 (336)
Q Consensus       185 ~v~~a~~L~~~~~~-~~dPyv~i~l~--~----~~~rT~~~~~t~nP~W~e~f~f~v~-----~~~~~L~v~V~d~~~~~  252 (336)
                      ..++|++|..++.. ++|||..++-.  .    ..++|.+++++++|.|.+ |.+...     +....+.+.+||++.-+
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence            34567889999987 99999988752  2    236999999999999998 444432     24578999999999999


Q ss_pred             CCCeeEEEEEeCccccc
Q 019768          253 ADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~  269 (336)
                      ++++||.+..++.++..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            99999999999988853

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.07  E-value=0.0013  Score=49.22  Aligned_cols=84  Identities=12%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             EEEEEeeeecccCCCC--CCCcEEE--EEECC-eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCC
Q 019768          183 KVKVVKGINLAIRDMM--SSDPYVV--LRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSAD  254 (336)
Q Consensus       183 ~V~v~~a~~L~~~~~~--~~dPyv~--i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~d  254 (336)
                      -|+|+.+++|.-....  .+.-|++  +.+.+ -..+|.......||+|.|+|.|.+..   ..-.|.|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            3778888888654443  3334543  33433 35689999999999999999999854   34568889988  44577


Q ss_pred             CeeEEEEEeCcccc
Q 019768          255 DIMGEAEIDIQPLL  268 (336)
Q Consensus       255 d~iG~~~i~l~~l~  268 (336)
                      +.||.+.+.++++-
T Consensus        80 e~iG~~sL~l~s~g   93 (103)
T cd08684          80 RTIGECSLSLRTLS   93 (103)
T ss_pred             ceeeEEEeecccCC
Confidence            89999999998874

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.03  E-value=0.00049  Score=64.93  Aligned_cols=89  Identities=22%  Similarity=0.418  Sum_probs=67.5

Q ss_pred             EEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccCC------------CCceE
Q 019768          181 LLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE------------YGPVK  242 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~~------------~~~L~  242 (336)
                      .|.+.|+++.+++..... ..|-|+.+.+     ..++.+|.+++.|.+|.|+|.|.+.+...            ...++
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            366777777776654432 4578888876     23567899999999999999999988651            23589


Q ss_pred             EEEEecCCC-CCCCeeEEEEEeCccccc
Q 019768          243 LEVFDHDTF-SADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       243 v~V~d~~~~-~~dd~iG~~~i~l~~l~~  269 (336)
                      |++|++..| .+|.++|.+.+.|..|..
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len  475 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILEN  475 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhc
Confidence            999998765 457899999999987743

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.67  E-value=0.0034  Score=64.44  Aligned_cols=89  Identities=21%  Similarity=0.411  Sum_probs=69.3

Q ss_pred             EEEEEEEEEEeeeecccCCCCCCCcEEEEEEC-------CeEEEeeeeCC-CCCceeec-eeeec--ccCCCCceEEEEE
Q 019768          178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-------QQTVQTTIVKS-NLNPVWNE-ELMLS--VPQEYGPVKLEVF  246 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-------~~~~rT~~~~~-t~nP~W~e-~f~f~--v~~~~~~L~v~V~  246 (336)
                      ..+++.|+|++|+-|..+..   ..||.|.+=       ...+||+++.. +.||+|+| .|.|.  +-+.-..|.|.||
T Consensus       701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            35889999999998887765   589999882       14568888876 89999996 56775  2335578999999


Q ss_pred             ecCCCCCCCeeEEEEEeCccccccccc
Q 019768          247 DHDTFSADDIMGEAEIDIQPLLTSALA  273 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~~~~~~  273 (336)
                      +..    ..|||+-.+|+..|..+.+.
T Consensus       778 eEg----gK~ig~RIlpvd~l~~GYrh  800 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAGYRH  800 (1189)
T ss_pred             ccC----CceeeeeccchhcccCccee
Confidence            855    36999999999998766544

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=95.75  E-value=0.013  Score=53.73  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             ceeEEEEEEEEEEEeeeecccCCC--C-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecC
Q 019768          174 GMVEFIGLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHD  249 (336)
Q Consensus       174 g~~~~~g~L~V~v~~a~~L~~~~~--~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~  249 (336)
                      .....+|.|.+.++++++|.....  + +-+-||++..+.+ +-||.+.....--.|.|.|..++.. ...+.+-||.|+
T Consensus        45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~  123 (442)
T KOG1452|consen   45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWP  123 (442)
T ss_pred             eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecC
Confidence            345568999999999999976554  3 6789999998764 3467766667777899999988765 357888999988


Q ss_pred             CCCCCCee
Q 019768          250 TFSADDIM  257 (336)
Q Consensus       250 ~~~~dd~i  257 (336)
                      .-.++.+.
T Consensus       124 pq~RHKLC  131 (442)
T KOG1452|consen  124 PQRRHKLC  131 (442)
T ss_pred             chhhcccc
Confidence            76566543

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.72  E-value=0.14  Score=42.83  Aligned_cols=88  Identities=17%  Similarity=0.302  Sum_probs=59.0

Q ss_pred             EEEEEEEEeeeecccCCC---CCCCc--EEEEEECCeEEEeeeeCCCCCceeeceeeecccCC--------------CCc
Q 019768          180 GLLKVKVVKGINLAIRDM---MSSDP--YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE--------------YGP  240 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~---~~~dP--yv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~--------------~~~  240 (336)
                      -.|++.|..++-....-.   ...+.  .+-+.+++++++|+.+..+.+|.|+|.|-|++...              .++
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p   88 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP   88 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence            347888888765432211   22233  34455689999999999999999999999998652              135


Q ss_pred             eEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768          241 VKLEVFDHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       241 L~v~V~d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      +.+-|.--|..+...++|.-.++=..+
T Consensus        89 ihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   89 IHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             eEEEEEEecCCCceEeeeeceehHHHH
Confidence            677776666655556777666654444

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.41  E-value=0.11  Score=44.35  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=60.0

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  250 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~  250 (336)
                      .+.|+|+.+.+|...+ ...+-||.+.+  |.+.    ..|+.+.-...+.|||.+.|++.-    ....|.|.||+...
T Consensus         9 ~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~   87 (173)
T cd08693           9 KFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK   87 (173)
T ss_pred             CEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence            5789999999888611 14566777654  5543    355555556779999999998743    34679999998653


Q ss_pred             CC----------------CCCeeEEEEEeCccc
Q 019768          251 FS----------------ADDIMGEAEIDIQPL  267 (336)
Q Consensus       251 ~~----------------~dd~iG~~~i~l~~l  267 (336)
                      ..                .+..||.+.++|-+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccCcceEEEEEeEEEEcc
Confidence            22                246899999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.33  E-value=0.14  Score=43.17  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             EEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeEE----EeeeeCCCCCceeeceeeecccC----CCCceEEEEEecC
Q 019768          180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQTV----QTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD  249 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~~----rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~  249 (336)
                      ..+.|+|+.+.++...+  ..+-||.+.+  |++..    .|+.+.. .++.|||...|++.-    ....|.|+||+..
T Consensus         8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            45789999999887653  3578888765  55432    4444443 679999999998742    3467999999965


Q ss_pred             CCC----CCCeeEEEEEeCccc
Q 019768          250 TFS----ADDIMGEAEIDIQPL  267 (336)
Q Consensus       250 ~~~----~dd~iG~~~i~l~~l  267 (336)
                      .-.    ....||.+.++|-+.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECC
Confidence            421    224699999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.24  E-value=0.11  Score=43.54  Aligned_cols=87  Identities=18%  Similarity=0.239  Sum_probs=57.6

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  250 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~  250 (336)
                      .+.|.+....++...+....+-||.+.+  |++.    ..|.......++.|||...|++.-    ....|.|+||+.+.
T Consensus         9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~   88 (156)
T cd08380           9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE   88 (156)
T ss_pred             CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence            4667777766665422224466776655  5442    244444334789999999998642    34679999999775


Q ss_pred             CC--CCCeeEEEEEeCccc
Q 019768          251 FS--ADDIMGEAEIDIQPL  267 (336)
Q Consensus       251 ~~--~dd~iG~~~i~l~~l  267 (336)
                      .+  .+..||.+.++|-+.
T Consensus        89 ~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          89 PGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             CCCCcceEEEEEeEEeEcc
Confidence            43  457999999999774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=94.91  E-value=0.0049  Score=64.36  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=58.7

Q ss_pred             CCCCCCCcCCCC-CCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhc
Q 019768           29 QRDNRICADCGA-PDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAF  104 (336)
Q Consensus        29 ~~~N~~C~dC~~-~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~  104 (336)
                      ...+..|++|++ +.-.|+++|+.+-+|+.|+++|+.++.|++...++.|++..+  |......|++..-..+.+++
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~  701 (785)
T KOG0521|consen  627 ASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGH  701 (785)
T ss_pred             hccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhcc
Confidence            345889999997 577899999999999999999999999999999999988877  55555555444444444444

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.88  E-value=0.099  Score=44.07  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768          199 SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       199 ~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      .++-||.+.+  +++.    ..|..+.-+..+.|||...|++.-    ....|.|+||+.+..+....||.+.++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3466776655  4432    355555556778999999998743    3467999999987655677999999998764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.69  E-value=0.48  Score=44.87  Aligned_cols=102  Identities=21%  Similarity=0.341  Sum_probs=76.3

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--------CCCceEEEEEecC-CCC
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVFDHD-TFS  252 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~V~d~~-~~~  252 (336)
                      +.|.|++|++.+....  ..-.+...+++....|..+..+-.|.|+..+.-.+..        ...+|++++|..+ .-+
T Consensus         2 ivl~i~egr~F~~~~~--~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR--HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCCC--ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            5788999999887632  2456777889999999999999999999887766532        4568999999987 445


Q ss_pred             CCCeeEEEEEeCcccc-cccccCCCCCccCceeeceeeecCC
Q 019768          253 ADDIMGEAEIDIQPLL-TSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~-~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ..+.||.+.++|.... ...        .......+||+|-.
T Consensus        80 ~re~iGyv~LdLRsa~~~~~--------~~~~~~~~W~~LL~  113 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQE--------KNQKQKPKWYKLLS  113 (340)
T ss_pred             cceeccEEEEEccccccccc--------cccccCCCeeEccc
Confidence            6789999999998871 111        11234567998754

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.37  E-value=0.38  Score=41.02  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CCeEE----EeeeeC--C--CCCceeeceeeecccC----CCCceE
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTV----QTTIVK--S--NLNPVWNEELMLSVPQ----EYGPVK  242 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~~~----rT~~~~--~--t~nP~W~e~f~f~v~~----~~~~L~  242 (336)
                      ....+.|+|..+.+++..... ..+-|+.+.+  |.+..    .|+...  +  ...+.|||...|++.-    ....|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            345678889999888776543 4678887765  55432    443222  1  3367899999888742    345799


Q ss_pred             EEEEecCCCC---------CCCeeEEEEEeCccc
Q 019768          243 LEVFDHDTFS---------ADDIMGEAEIDIQPL  267 (336)
Q Consensus       243 v~V~d~~~~~---------~dd~iG~~~i~l~~l  267 (336)
                      |+||+.....         .+..||.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999976543         356999999998774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.71  E-value=2.3  Score=34.57  Aligned_cols=88  Identities=18%  Similarity=0.292  Sum_probs=57.3

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeE---EEeeeeC-CCCCceeeceeeecccC---------CCCceEEEE
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT---VQTTIVK-SNLNPVWNEELMLSVPQ---------EYGPVKLEV  245 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~---~rT~~~~-~t~nP~W~e~f~f~v~~---------~~~~L~v~V  245 (336)
                      .=.+.|.|.+..+++...   ...||....+...   ..|.... .+-.-.|+|.|.+.+.-         ....+.|.|
T Consensus         6 kf~~~l~i~~l~~~p~~~---~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSSN---GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             eEEEEEEEEEeECcCCCC---CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            345778888888777722   2345555555543   3444333 35668899999887632         223578888


Q ss_pred             EecCCCCCCCeeEEEEEeCccccc
Q 019768          246 FDHDTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       246 ~d~~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      +....-++...+|.+.++|.+++.
T Consensus        83 ~~~~~~~~k~~lG~~~inLaey~~  106 (143)
T PF10358_consen   83 FEVDGSGKKKVLGKVSINLAEYAN  106 (143)
T ss_pred             EEecCCCccceEEEEEEEHHHhhC
Confidence            887432333699999999999864

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.42  E-value=1.1  Score=38.53  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE---EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT---VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTF  251 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~---~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~  251 (336)
                      .++|+|..+..+.........-||.+.+  |+..   .+|....-+.++.|||.+.|++.-    ....|.|.||+...-
T Consensus        11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~   90 (178)
T cd08399          11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP   90 (178)
T ss_pred             CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence            4667777765332221112335565544  4432   256655567789999998888743    346799999986321


Q ss_pred             C----------------CCCeeEEEEEeCccc
Q 019768          252 S----------------ADDIMGEAEIDIQPL  267 (336)
Q Consensus       252 ~----------------~dd~iG~~~i~l~~l  267 (336)
                      .                .+..||.+.+.|-+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             cccccccccccccccccccceEEEEEEEEEcC
Confidence            1                256788899888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.13  E-value=0.73  Score=37.87  Aligned_cols=54  Identities=17%  Similarity=0.311  Sum_probs=39.7

Q ss_pred             EeeeeCCC-CCceeeceeeeccc--C--CCCceEEEEEecCCCCCC----CeeEEEEEeCccc
Q 019768          214 QTTIVKSN-LNPVWNEELMLSVP--Q--EYGPVKLEVFDHDTFSAD----DIMGEAEIDIQPL  267 (336)
Q Consensus       214 rT~~~~~t-~nP~W~e~f~f~v~--~--~~~~L~v~V~d~~~~~~d----d~iG~~~i~l~~l  267 (336)
                      .|....-+ .++.|+|.+.|++.  +  ....|.|+||+.+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555555 79999999888863  2  456799999998775554    6999999999775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.02  E-value=2  Score=36.52  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             CCCcEEEEEECCeEE-EeeeeCC--CCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccc
Q 019768          199 SSDPYVVLRLGQQTV-QTTIVKS--NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       199 ~~dPyv~i~l~~~~~-rT~~~~~--t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      ...-|+++.++++.. +|+...-  ...-.|+|.|.+.+....+.|.|+||.... ..+.+|+.+.+|+-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            346788998877654 5544333  344567899999987766889999999887 57899999999987653

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=91.80  E-value=2.3  Score=36.87  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=41.9

Q ss_pred             EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCC--CCeeEEEEEeCc
Q 019768          212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA--DDIMGEAEIDIQ  265 (336)
Q Consensus       212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~--dd~iG~~~i~l~  265 (336)
                      .++|-+...+.+|.|+|++.+.++.   ....|.|++++...-.+  ...+|-+-+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            5689999999999999999999876   45678888887543221  257899989884

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=89.72  E-value=4.8  Score=34.99  Aligned_cols=55  Identities=9%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC----CCCCeeEEEEEeCc
Q 019768          211 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF----SADDIMGEAEIDIQ  265 (336)
Q Consensus       211 ~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~----~~dd~iG~~~i~l~  265 (336)
                      ..++|-+...+.+|.|+|++.+.++.   ....|.|++++...-    .....+|-+-+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            35788898999999999999999876   456789999875421    12247898888884

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=89.22  E-value=1.1  Score=38.57  Aligned_cols=55  Identities=15%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCC---CCeeEEEEEeCcc
Q 019768          212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA---DDIMGEAEIDIQP  266 (336)
Q Consensus       212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~---dd~iG~~~i~l~~  266 (336)
                      .+.|.+...+.+|.|+|+|.+.++.   ....|.|++++...-..   ...+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            4578888889999999999999876   44678999998554221   1699999999876

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=88.99  E-value=0.81  Score=45.47  Aligned_cols=58  Identities=26%  Similarity=0.545  Sum_probs=47.8

Q ss_pred             EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC----CCCCCeeEEEEEeCcccccc
Q 019768          213 VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----FSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       213 ~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~----~~~dd~iG~~~i~l~~l~~~  270 (336)
                      .+|.++.+.+||.|.+.|.+...- ..+.|++.++|-+.    +..++|+|++...+..+...
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            489999999999999998877654 55789999998664    35678999999999988754

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=88.88  E-value=3.6  Score=31.18  Aligned_cols=63  Identities=19%  Similarity=0.314  Sum_probs=44.6

Q ss_pred             CCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768          200 SDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       200 ~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l  267 (336)
                      .+-.+++.+++... +|.-. .-.+..|++.|.|.+.. ...|.|.||-+|-   ..+.|...+.|++.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            36677888877554 45433 33678899999999865 4689999998764   24667777777764

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.73  E-value=5.9  Score=30.39  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             EEEEEEeeeecccCCCC-CCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecC
Q 019768          182 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD  249 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~  249 (336)
                      +.+.+....+....... ..+-||.+.+  |++.    ..|..+.-...+.|||...|++.-    ....|.|+||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            34455555554433322 2377887765  5543    355554446669999999888643    3467899999854

Outlier of C2 family.

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=84.73  E-value=11  Score=31.93  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=48.8

Q ss_pred             EEEeeeecccCCCCCCCcEEEEEE----------CCe-EEEeeeeCC-----CCCceeeceeeecccC----CCCceEEE
Q 019768          185 KVVKGINLAIRDMMSSDPYVVLRL----------GQQ-TVQTTIVKS-----NLNPVWNEELMLSVPQ----EYGPVKLE  244 (336)
Q Consensus       185 ~v~~a~~L~~~~~~~~dPyv~i~l----------~~~-~~rT~~~~~-----t~nP~W~e~f~f~v~~----~~~~L~v~  244 (336)
                      .|..|.+..     ..+-||+..+          +.. .-.|.+...     +..-.|+.-|++.+..    .-..|.|+
T Consensus         7 ~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~   81 (168)
T PF07162_consen    7 EIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ   81 (168)
T ss_pred             EEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence            355665432     2356777766          223 345555543     3346799877776643    12468999


Q ss_pred             EEecCCCCCCCeeEEEEEeCc
Q 019768          245 VFDHDTFSADDIMGEAEIDIQ  265 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~  265 (336)
                      ||..|..+++.+.|-..+.|-
T Consensus        82 V~~~D~~gr~~~~GYG~~~lP  102 (168)
T PF07162_consen   82 VYSLDSWGRDRVEGYGFCHLP  102 (168)
T ss_pred             EEEEcccCCeEEeEEeEEEeC
Confidence            999999999999888766653

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.88  E-value=0.98  Score=28.58  Aligned_cols=34  Identities=12%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CCCCCcCCCCCCCCeEEeeeceEEcccchhh-hcc
Q 019768           31 DNRICADCGAPDPKWASANIGVFICLKCCGV-HRS   64 (336)
Q Consensus        31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~-hr~   64 (336)
                      .+..|..|+.....+.+.+=++++|..|... |+.
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~   36 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG   36 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence            3568999998878899999999999999987 877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>PRK12495 hypothetical protein; Provisional

Probab=82.09  E-value=1.1  Score=39.24  Aligned_cols=37  Identities=35%  Similarity=0.641  Sum_probs=28.2

Q ss_pred             HHHHHHHhC---CCCCCCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768           21 GRLKDLLLQ---RDNRICADCGAPDPKWASANIGVFICLKCCGV   61 (336)
Q Consensus        21 ~~l~~~~~~---~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~   61 (336)
                      +++.+||.+   ..+..|-+||.+=|.   + -|+.+|..|..+
T Consensus        28 ~~ma~lL~~gatmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~   67 (226)
T PRK12495         28 ERMSELLLQGATMTNAHCDECGDPIFR---H-DGQEFCPTCQQP   67 (226)
T ss_pred             HHHHHHHHhhcccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence            445555554   568999999999883   2 699999999755

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=82.06  E-value=1.2  Score=27.59  Aligned_cols=26  Identities=31%  Similarity=0.889  Sum_probs=22.6

Q ss_pred             CCCCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768           30 RDNRICADCGAPDPKWASANIGVFICLKC   58 (336)
Q Consensus        30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C   58 (336)
                      ..|..|..|++.   |...+=|-+.|.+|
T Consensus         6 ~~~~~C~~C~~~---~~~~~dG~~yC~~c   31 (36)
T PF11781_consen    6 GPNEPCPVCGSR---WFYSDDGFYYCDRC   31 (36)
T ss_pred             cCCCcCCCCCCe---EeEccCCEEEhhhC
Confidence            346679999997   88899999999999

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=81.21  E-value=5.3  Score=34.14  Aligned_cols=53  Identities=15%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             EEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC-----CCCCeeEEEEEeCcc
Q 019768          213 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-----SADDIMGEAEIDIQP  266 (336)
Q Consensus       213 ~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~-----~~dd~iG~~~i~l~~  266 (336)
                      ++|-+..+ .+|.|+|+|.+.++.   ....|.|++++-..-     .....+|-+.+||-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            34444444 999999999998865   456789999985532     235689999999865

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		4e-30
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		1e-25
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		1e-25
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		7e-25
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		7e-22
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		7e-22
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		7e-22
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		5e-18
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		6e-17
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		6e-17
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		1e-16
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		2e-16
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		7e-15
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		9e-15
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		5e-14
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-13
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		1e-12
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-11
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		4e-10
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		2e-09
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		3e-08
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-06
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-06
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-06
2d9l_A	134	Solution Structure Of The Arfgap Domain Of Human Ri		5e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		9e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		9e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-05
2olm_A	140	Arfgap Domain Of Hiv-1 Rev Binding Protein Length =		1e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		4e-04
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		4e-04
1gmi_A	136	Structure Of The C2 Domain From Novel Protein Kinas		4e-04
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		8e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		8e-04

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 4/119 (3%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 18  LANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 77
Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct: 78  EQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 132

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 19  GKGRLKDLL--LQR-DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSV 75
           GK R + +L  LQR  N  CADCGAPDP WAS  +GVFICL C G+HR++   VSKV SV
Sbjct: 18  GKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSV 76
Query: 76  TLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL 135
            LD W + +V+ M    GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+
Sbjct: 77  RLDAWEEAQVEFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFI 135
Query: 136 KP 137
            P
Sbjct: 136 YP 137

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
Query: 27  LLQR-DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEV 85
           LLQR  N  CADCGAPDP WAS  +GVFICL C G+HR++   VSKV SV LD W + +V
Sbjct: 30  LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQV 88
Query: 86  DAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 137
           + M    GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P
Sbjct: 89  EFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 139

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 4/104 (3%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L  LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ 
Sbjct: 20  LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTA 79
Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIR 126
           +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR
Sbjct: 80  EQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVEF---FIR 119

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+
Sbjct: 45  NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 92  GGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 135
            GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL
Sbjct: 105 -GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+
Sbjct: 45  NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 92  GGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 135
            GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL
Sbjct: 105 -GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+
Sbjct: 45  NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 92  GGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 135
            GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL
Sbjct: 105 -GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N +C DCGAPDP W S N+G+  C++C G+HR LG H S++ S+TLD     E+     +
Sbjct: 17  NDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNI 76
Query: 92  GGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASL 150
            GN+  N I E  +P E   KP P S    R  +I +KY  + + +      + K  +  
Sbjct: 77  -GNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLC 135
Query: 151 QSSFSRKII 159
           ++  +R I 
Sbjct: 136 EAVKTRDIF 144

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           LK++ +Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D W D
Sbjct: 28  LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 87
Query: 83  DEVDAMIEVGGNSSANAIYEA 103
            E++ M + GGN+      E+
Sbjct: 88  IELEKM-KAGGNAKFREFLES 107

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DCGA DP W S N+GV  C++C GVHR LG   S++ S+TLD     E+   + +
Sbjct: 23  NSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82
Query: 92  GGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLK 136
            GN+S N + EA +P  G  KP  +S    R  +I +KY    F +
Sbjct: 83  -GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFAR 127

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DCGA DP W S N+GV  C++C GVHR LG   S++ S+TLD     E+   + +
Sbjct: 42  NSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 101
Query: 92  GGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLK 136
            GN+S N + EA +P  G  KP  +S    R  +I +KY    F +
Sbjct: 102 -GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFAR 146

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           LK++ +Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D W D
Sbjct: 29  LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 88
Query: 83  DEVDAMIEVGGNSSANAIYEA 103
            E++ M + GGN+      E+
Sbjct: 89  IELEKM-KAGGNAKFREFLES 108

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIE 90
           N++C DCGA +P WAS   GVF+C+ C G HRSLG H+S + S  LD +WS  ++  M +
Sbjct: 29  NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-Q 87
Query: 91  VGGNSSANAIYE 102
           VGGN+SA++ + 
Sbjct: 88  VGGNASASSFFH 99

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWS 81
            K L     N+ C DCGA +P WAS   GVF+C+ C GVHRSLG H+S + S  LD +W+
Sbjct: 28  FKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWN 87
Query: 82  DDEVDAMIEVGGNSSANAIYE 102
             ++  M +VGGN++A A + 
Sbjct: 88  WFQLRCM-QVGGNANATAFFR 107

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 32  NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91
           N  C DCG  +P W S N G+F+C+ C GVHRSLG H+S V S+ +D ++D+++   I+ 
Sbjct: 22  NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQL-KYIDK 80
Query: 92  GGNSSANAIYEA-----FIPE 107
           GGN       E      FIPE
Sbjct: 81  GGNKKCQTYLENYGISDFIPE 101

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 25/169 (14%)
Query: 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLS 233
           +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++  
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 234 VPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293
           V  +   +  EVFD +  + DD +G+ ++ + PL T       P  F            D
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFK-----------D 117
Query: 294 NALLEDSTINIIDGKVKQKISL------KLQNVESGELELELEWMPLDQ 336
             L   S  + + G ++ K++       + +N +  E ELE  W+ LDQ
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAE-ELEPGWVVLDQ 165

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 176 VEFIGLL---------KVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVK 219
           VE  GLL         +V+V+ GI LA +D++ +SDPYV + L         +VQT  +K
Sbjct: 7   VEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK 66
Query: 220 SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEM 279
            +LNP WNEE++  V  +   +  EVFD +  + DD +G+ ++ + PL T       P  
Sbjct: 67  KSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 280 FGNM 283
           F + 
Sbjct: 127 FKDF 130

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELML 232
           +L+VKVV GI+LA +D+  +SDPYV L L           VQT  +K  LNP WNEE   
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 233 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNM 283
            V      +  EVFD +  + DD +G+ ++ +  L T       P  F + 
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDF 132

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 31  DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIE 90
           +NR C DC + +P W S +  VFICL C   HR +G H+S V S  LD ++  ++  M +
Sbjct: 35  ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRM-D 93
Query: 91  VGGNSSANAIYE 102
           +GGN  A   ++
Sbjct: 94  IGGNGRARNYFK 105

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 174 GMVEFIGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 232
           G V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+    
Sbjct: 7   GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Query: 233 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 269
            +   +  +++ VFD D     D +G+  I   PLL+
Sbjct: 67  PIKDIHDVLEVTVFDEDGDKPPDFLGKVAI---PLLS 100

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 179 IGLLKVKVVKGINL-AIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE 237
           IG L V V++   L A +    S+PY  + +G Q+  T  ++  LNP WN      +   
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 238 YGPVK-LEVFDHDTFSADDIMGEAEIDIQPLLT 269
           Y  V  L +FD D FS DD +G  EI +  + T
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRT 478

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 182 LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 236
           L V++++ ++L  +D    SDPYV + L    ++  QT + +  LNP++NE    SVP  
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 237 EYGPVKLE--VFDHDTFSADDIMGEAEID 263
           E    KL   V+D D FS  D++G+  +D
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 182 LKVKVVKGINLAIRDMMS-SDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 236
           L V++++ ++L  +D    SDPYV + L    ++  QT + +  LNP++NE    SVP  
Sbjct: 23  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 237 EYGPVKLE--VFDHDTFSADDIMGEAEID 263
           E    KL   V+D D FS  D++G+  +D
Sbjct: 83  ELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 232
           G  ++   + + VV    L  +D   SSDPYV +++G+   +T  +  NLNPVW E    
Sbjct: 11  GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHF 70
Query: 233 SVPQEYGPVKLEVFDHD-----------TFSADDIMGEAEIDIQPL 267
                   +K+ V D D              +DD +G+  I+++ L
Sbjct: 71  ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 170 KKDVGMVEF-IGL------LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIV 218
           ++++G ++F +G       L VK++K   L  +D   +SDP+V + L    +  ++T + 
Sbjct: 9   RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK 68
Query: 219 KSNLNPVWNEELMLS-VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDI 264
           + NLNP WNE  +    P E      + L+V D+D FS +D +GE  I +
Sbjct: 69  RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 180 GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE 237
           G L+V +V    L   D +++ DPYV L    Q  ++ + +     P WNE  + +V + 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 238 YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
              +K ++FD D  + DD +GEA I ++P+ 
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100

>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 17  SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVT 76
           SSG   L+D+     NR C DC    P + +  +G F+C  C G  R L     +V S++
Sbjct: 5   SSGLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSIS 63
Query: 77  LDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSK-FIRSKYELQEFL 135
           +  ++  E++  ++  GN     I+     +  S   PD     + K F++ KYE + + 
Sbjct: 64  MTTFTQQEIE-FLQKHGNEVCKQIWLGLF-DDRSSAIPDFRDPQKVKEFLQEKYEKKRWY 121
Query: 136 KPSLRIASGKPSA 148
            P  +  SG  S 
Sbjct: 122 VPPEQAKSGPSSG 134

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 236
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 237 EYG--PVKLEVFDHDTFSADDIMGEAEI 262
           E G   + + V+D D FS  DI+GE ++
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 106

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 236
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 237 EYG--PVKLEVFDHDTFSADDIMGEAEI 262
           E G   + + V+D D FS  DI+GE ++
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP-Q 236
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 237 EYG--PVKLEVFDHDTFSADDIMGEAEI 262
           E G   + + V+D D FS  DI+GE ++
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ- 236
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 237 EYG--PVKLEVFDHDTFSADDIMGEAEI 262
           E G   + + V+D D FS  DI+GE ++
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE 237
           L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP  
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 238 YGPVK---LEVFDHDTFSADDIMGEAEI 262
               K   + V+D D FS  DI+GE ++
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKV 108

>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           L+D+     NR C DC    P + +  +G F+C  C G  R L     +V S+++  ++ 
Sbjct: 16  LRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFTQ 74
Query: 83  DEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSK-FIRSKYELQEFLKP 137
            E++  ++  GN     I+     +  S   PD     + K F++ KYE + +  P
Sbjct: 75  QEIE-FLQKHGNEVCKQIWLGLF-DDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 19/105 (18%)
Query: 179 IGLLKVKVVKGINLAIRDMMS-SDPYVVLRL----GQQTV----------QTTIVKSNLN 223
           +G L + +++  NL  RD    SDP+V + L    GQ  V          +T  V+ +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 224 PVWNEELML-SVPQEY---GPVKLEVFDHDTFSADDIMGEAEIDI 264
           P WN+ ++  S+  E      +++ V+D+D FS++D +GE  ID+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 200 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVK----LEVFDHDT 250
           SDPYV L+L          +T  VK+ LNPVWNE  + ++  + G V+    +EV+D D 
Sbjct: 41  SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL--KPGDVERRLSVEVWDWDR 98
Query: 251 FSADDIMGEAEIDIQPLLTSAL 272
            S +D MG     +  LL + +
Sbjct: 99  TSRNDFMGAMSFGVSELLKAPV 120

>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C Epsilon Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 175 MVEFIGLLKVKVVKGINL-----AIRDMMSS-------DPYVVLRLGQQTVQTTIVKSNL 222
           MV F GLLK+K+ + ++L     ++RD +         DPY+ L +    +  T  K   
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 223 N-PVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
           N P W++E +  V      ++L VF       DD +    I  + LL
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELL 106

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 164 STNSSQKKDVGMVEFIGL-------LKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQ 210
           S +S Q   +G +EF  L       L+  +++   L   D    +DPYV L L       
Sbjct: 6   SYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65
Query: 211 QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSADDIMGEAEIDIQP 266
             ++T  +++  NPVWNE L      E       +++ V D D F  ++ +GE    ++ 
Sbjct: 66  NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125
Query: 267 L 267
           L
Sbjct: 126 L 126

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 200 SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKL--EVFDHDTFS 252
           SDPYV L+L      +   +T  +KS+LNP WNE     + +     +L  E++D D  S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 253 ADDIMGEAEIDIQPLLTSAL 272
            +D MG     I  L  + +
Sbjct: 253 RNDFMGSLSFGISELQKAGV 272

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	3e-61
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	7e-60
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-59
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-55
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-55
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	4e-55
2owa_A	138	Arfgap-like finger domain containing protein; zinc	5e-51
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	7e-51
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	4e-48
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	1e-46
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	4e-42
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	2e-41
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-41
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-39
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	5e-37
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-36
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-35
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-33
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-32
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-30
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-30
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-29
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-26
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-23
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-23
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-23
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-22
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	8e-22
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	7e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	8e-15
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-15
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	6e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-18
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-17
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-17
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-16
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-16
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-15
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	3e-15
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-15
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	9e-15
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-14
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-14
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-13
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	9e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-05

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  191 bits (486), Expect = 3e-61
 Identities = 59/142 (41%), Positives = 90/142 (63%), Gaps = 9/142 (6%)

Query: 2   SMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGV 61
           SM   + + ++       +  L +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+
Sbjct: 2   SMTGKSVKDVD-----RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGI 56

Query: 62  HRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIR 121
           HR+LG H+S+V SV LD W+ +++  M +  GN  AN +YEA++PE   +P  D + E  
Sbjct: 57  HRNLGVHISRVKSVNLDQWTQEQIQCM-QEMGNGKANRLYEAYLPETFRRPQIDPAVE-- 113

Query: 122 SKFIRSKYELQEFLKPSLRIAS 143
             FIR KYE ++++  SL I +
Sbjct: 114 -GFIRDKYEKKKYMDRSLDINA 134

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  188 bits (478), Expect = 7e-60
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)

Query: 22  RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWS 81
            L  LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+
Sbjct: 19  ILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 78

Query: 82  DDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
            +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR KYE +++   +   
Sbjct: 79  AEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVE---FFIRDKYEKKKYYDKNAIA 134

Query: 142 ASGKPS 147
            SG  S
Sbjct: 135 ISGPSS 140

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  193 bits (492), Expect = 3e-59
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 2/159 (1%)

Query: 15  KPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLS 74
           +P      +  +     N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S
Sbjct: 28  EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRS 87

Query: 75  VTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQE 133
           +TLD W  + V  M E+ GN   N IYEA +    V KPGP  S + +  +I +KY  ++
Sbjct: 88  LTLDSWEPELVKLMCEL-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKK 146

Query: 134 FLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKD 172
           FL     I   +                         + 
Sbjct: 147 FLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRS 185

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  182 bits (463), Expect = 1e-55
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 2/151 (1%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           K  + ++  +  N  C DCGA DP W S N+GV  C++C GVHR LG   S++ S+TLD 
Sbjct: 30  KLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDL 89

Query: 80  WSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138
               E+   + + GN+S N + EA +P  G  KP  +S    R  +I +KY    F +  
Sbjct: 90  LGPSELLLALNM-GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 148

Query: 139 LRIASGKPSASLQSSFSRKIIDSFRSTNSSQ 169
                   +A         +       +  Q
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQ 179

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  180 bits (459), Expect = 2e-55
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 2/150 (1%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           K  + ++     N +C DCGAPDP W S N+G+  C++C G+HR LG H S++ S+TLD 
Sbjct: 5   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64

Query: 80  WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSK-PGPDSSHEIRSKFIRSKYELQEFLKPS 138
               E+     + GN+  N I E  +P      P P S    R  +I +KY  + + +  
Sbjct: 65  LGTSELLLAKNI-GNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123

Query: 139 LRIASGKPSASLQSSFSRKIIDSFRSTNSS 168
               + K  +  ++  +R I    ++    
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADG 153

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  183 bits (466), Expect = 4e-55
 Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 22  RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWS 81
            + +LL +  N  CADCGAPDP WAS  +GVFICL C G+HR++   VSKV SV LD W 
Sbjct: 24  AVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWE 82

Query: 82  DDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
           + +V+ M    GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P  + 
Sbjct: 83  EAQVEFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE 141

Query: 142 ASGKPSASLQSSFSRKIIDSFRS 164
                          +    F S
Sbjct: 142 PYSAGYREGFLWKRGRDNGQFLS 164

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  165 bits (418), Expect = 5e-51
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 1   MSMRNNNNRPLELGKPSSGKGR---LKDLLLQRDNRICADCGAPDPKWASANIGVFICLK 57
           M++ N  N  ++     S K R    + +  + +NR C DC + +P W S +  VFICL 
Sbjct: 2   MNISNLINADVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLN 61

Query: 58  CCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSS 117
           C   HR +G H+S V S  LD ++  ++  M ++GGN  A   ++  +    S      +
Sbjct: 62  CSSDHRKMGVHISFVRSSDLDKFTPIQLVRM-DIGGNGRARNYFKQVLGVNFSPK----T 116

Query: 118 HEIRSKFIRSKYE 130
            E  S     +Y+
Sbjct: 117 KEYASSICGRQYK 129

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score =  164 bits (418), Expect = 7e-51
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 22  RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWS 81
            L+D+     NR C DC    P + +  +G F+C  C G  R L     +V S+++  ++
Sbjct: 15  MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFT 73

Query: 82  DDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141
             E++ + +  GN     I+     +  S        +   +F++ KYE + +  P    
Sbjct: 74  QQEIEFL-QKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP---P 129

Query: 142 ASGKPSASLQS 152
              K  AS+ +
Sbjct: 130 EQAKVVASVHA 140

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =  157 bits (399), Expect = 4e-48
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           +  LK++ +Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D 
Sbjct: 26  RKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK 85

Query: 80  WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKY----ELQEFL 135
           W D E++ M + GGN+      E+           +  +   +   R K     E +E+ 
Sbjct: 86  WKDIELEKM-KAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWS 144

Query: 136 KPS 138
             S
Sbjct: 145 LES 147

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  154 bits (390), Expect = 1e-46
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 22  RLKDLLLQR-DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDW 80
            +  L  +   N  C DCG  +P W S N G+F+C+ C GVHRSLG H+S V S+ +D +
Sbjct: 11  FINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIF 70

Query: 81  SDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSS---HEIRSKFIRSKYELQEFLKP 137
           +D+++  + + GGN       E +            +      R   +RS     +   P
Sbjct: 71  TDEQLKYI-DKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKI-LRSIVHNVDPPAP 128

Query: 138 SLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKKD 172
            L +  GK   +   + +    ++ ++  S+++ D
Sbjct: 129 -LPLDEGKSLINYGRNENVN--ENNKNQYSNEEPD 160

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score =  142 bits (359), Expect = 4e-42
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 22  RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DW 80
             K L     N+ C DCGA +P WAS   GVF+C+ C GVHRSLG H+S + S  LD +W
Sbjct: 27  LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86

Query: 81  SDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 130
           +  ++  M +VGGN++A A +              +S    ++  R K  
Sbjct: 87  NWFQLRCM-QVGGNANATAFFRQHGCTANDANTKYNSRA--AQMYREKIR 133

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score =  140 bits (355), Expect = 2e-41
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWS 81
            K L     N++C DCGA +P WAS   GVF+C+ C G HRSLG H+S + S  LD +WS
Sbjct: 20  FKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWS 79

Query: 82  DDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 130
             ++  M +VGGN+SA++ +              +S    ++  R K +
Sbjct: 80  WFQLRCM-QVGGNASASSFFHQHGCSTNDTNAKYNSR--AAQLYREKIK 125

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  149 bits (378), Expect = 2e-41
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 23  LKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSD 82
           + ++  +  N  C DCGA DP W S N+GV  C++C GVHR LG   S++ S+TLD    
Sbjct: 14  IAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGP 73

Query: 83  DEVDAMIEVGGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138
            E+   + + GN+S N + EA +P  G  KP  +S    R  +I +KY    F +  
Sbjct: 74  SELLLALNM-GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  133 bits (338), Expect = 4e-39
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 36/160 (22%)

Query: 174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELML 232
           G V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+    
Sbjct: 7   GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66

Query: 233 SVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292
            +   +  +++ VFD D     D +G+  I +  +       G P  +        LK  
Sbjct: 67  PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD-----GQPNCY-------VLK-- 112

Query: 293 DNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332
                                +  L+    G + LE++ +
Sbjct: 113 ---------------------NKDLEQAFKGVIYLEMDLI 131

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  128 bits (324), Expect = 5e-37
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 37/157 (23%)

Query: 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ 236
            G L+V +V    L   D + + DPYV L    Q  ++ + +     P WNE  + +V +
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 237 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 296
               +K ++FD D  + DD +GEA I ++P+             G++    +        
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE----------GSIPPTAYNVVK---- 114

Query: 297 LEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333
                    D + K            GE+ + L + P
Sbjct: 115 ---------DEEYK------------GEIWVALSFKP 130

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  129 bits (325), Expect = 1e-36
 Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 23/170 (13%)

Query: 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELM 231
             +++VKV+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WNEE++
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 232 LSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291
             V  +   +  EVFD +  + DD +G+ ++ + PL T            N ++ +    
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPT-----------ENPRMERPYTF 115

Query: 292 DDNALLEDSTINIIDGKVKQKISLKLQNVESGE-----LELELEWMPLDQ 336
            D  L   S  + + G ++ K++   +N    E      ELE  W+ LDQ
Sbjct: 116 KDFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQ 165

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  123 bits (311), Expect = 6e-35
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)

Query: 175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWN 227
             E   +++V+V+ GI LA +D++ +SDPYV + L         +VQT  +K +LNP WN
Sbjct: 15  DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74

Query: 228 EELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGK 287
           EE++  V  +   +  EVFD +  + DD +G+ ++ + PL T       P  F      K
Sbjct: 75  EEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTF------K 128

Query: 288 WLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333
                                         ++   G L L++ ++P
Sbjct: 129 DFVLHPR---------------------SHKSRVKGYLRLKMTYLP 153

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  120 bits (303), Expect = 2e-33
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 30/187 (16%)

Query: 151 QSSFSRKIIDSFRSTNSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG 209
            SS    +     S + SQ   +G +     L++ V+       +       PYV + + 
Sbjct: 7   HSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVD 66

Query: 210 QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLT 269
            Q+ +T    +  +P W + L + V      +   V+ H T  +D ++G A +DI   L 
Sbjct: 67  GQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETL- 124

Query: 270 SALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL 329
                                  +N  LE+  + +  G  K+           G+L + L
Sbjct: 125 ---------------------KSNNMKLEEVVVTLQLGGDKEPT------ETIGDLSICL 157

Query: 330 EWMPLDQ 336
           + + L+ 
Sbjct: 158 DGLQLES 164

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  117 bits (295), Expect = 1e-32
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE- 237
            G+L+V V    N+        DP V +    +  +T  V + LNPVWNE L   +    
Sbjct: 6   SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 238 ---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268
                 + + V D +T   + ++G A + ++ L 
Sbjct: 66  LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLT 99

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  112 bits (281), Expect = 1e-30
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 166 NSSQKKDVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNP 224
              Q    G  ++   + + VV    L  +D   SSDPYV +++G+   +T  +  NLNP
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNP 62

Query: 225 VWNEELMLSVPQEYGPVKLEVFDHD-----------TFSADDIMGEAEIDIQPL 267
           VW E            +K+ V D D              +DD +G+  I+++ L
Sbjct: 63  VWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  111 bits (279), Expect = 2e-30
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 175 MVEFIGLLKVKVVKGINLAIRDMM------------SSDPYVVLRLGQQTV-QTTIVKSN 221
           MV F GLLK+K+ + ++L                    DPY+ L +    + QT   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 222 LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 276
            +P W++E +  V      ++L VF       DD +    I  + LL +     +
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFE 114

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  114 bits (288), Expect = 1e-29
 Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           +  LK++ +Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D 
Sbjct: 25  RKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK 84

Query: 80  WSDDEVDAMIEVGGNSSANAIYEA 103
           W D E++ M + GGN+      E+
Sbjct: 85  WKDIELEKM-KAGGNAKFREFLES 107

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score =  101 bits (253), Expect = 2e-26
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 168 SQKKDVGMVEFIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQTV-QT 215
                 G ++F G L+V++ + + L                   DPY+ + + Q  V QT
Sbjct: 17  RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76

Query: 216 TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFG 275
           +  +    P +NEE   +V      ++L VF       D  +    +  Q LL +  A  
Sbjct: 77  STKQKTNKPTYNEEFCANVTDGG-HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135

Query: 276 DPEMFGNMQ 284
             E + +++
Sbjct: 136 TFEGWVDLE 144

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 99.6 bits (247), Expect = 2e-23
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 183 KVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV--PQEYGP 240
            V   +  +L      ++D Y+ +  G Q  +T +V +N NP W +++          GP
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 241 VKLEVFDHDTFSADDIMGEAEIDIQP 266
           ++++V+D D    DD++G  +     
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHS 482

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 47/160 (29%)

Query: 180 GLLKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELML 232
               V V++   +          + DPYV L +        +T    +++NPVWNE    
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 233 SVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291
            +      V ++ + D +    D+ +G A   +  +                        
Sbjct: 63  ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSM------------------------ 97

Query: 292 DDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331
                             K+++      V    LE+ LE 
Sbjct: 98  --------------KVGEKKEVPFIFNQVTEMVLEMSLEV 123

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.1 bits (224), Expect = 3e-22
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 233
            +L V V    NL   D    SDPYV L+L      +   +T  +K +LNP WNE     
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 234 VPQEYGPVKLE--VFDHDTFSADDIMGEAEIDIQPL 267
           + +     +L   ++D D  S +D MG     I  L
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 88.6 bits (220), Expect = 8e-22
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
           +++ V+   NLA +D     DP+  + +    Q   T  VK+ L+P WN+   L V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66

Query: 239 GPVKLEVFDHDTFSADD---IMGEAEIDIQPLL 268
             + + V++H           +G   +    + 
Sbjct: 67  -SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS 98

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 84.0 bits (208), Expect = 7e-20
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 151 QSSFSRKIIDSFRSTNSSQKKDV-GMVEF-------IGLLKVKVVKGINLAIRDMM-SSD 201
            S     I+DS       ++++  G +++          L V +++   L   DM  +SD
Sbjct: 5   ISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSD 64

Query: 202 PYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADD 255
           PYV + L    ++  +T + +  LNPV+NE+    VP        + + V+D D FS  D
Sbjct: 65  PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD 124

Query: 256 IMGEAEIDI 264
           I+GE ++ +
Sbjct: 125 IIGEFKVPM 133

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 171 KDVGMVEF-------IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVK 219
              G + F          L V++++ ++L  +D    SDPYV + L    ++  QT + +
Sbjct: 4   APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR 63

Query: 220 SNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 265
             LNP++NE    SVP        +   V+D D FS  D++G+  +D  
Sbjct: 64  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL 112

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 72.9 bits (179), Expect = 8e-15
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 233
           GLL V ++K  NL   D+   SDPYV   L  +       +T+I K+ LNP +NE L+  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 265
           V  E      + + V D+D    ++++G   +  +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 246

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 14/116 (12%)

Query: 163 RSTNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQ 211
                S  + +G +++          L V +++   L   DM  +SDPYV + L    ++
Sbjct: 10  GGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK 69

Query: 212 TVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 264
             +T + +  LNPV+NE+    VP        + + V+D D FS  DI+GE ++ +
Sbjct: 70  KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 171 KDVGMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVK 219
           + +G +++          L V +++   L   DM  +SDPYV + L    ++  +T + +
Sbjct: 3   EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 62

Query: 220 SNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPL 267
             LNPV+NE+    VP        + + V+D D FS  DI+GE ++ +  +
Sbjct: 63  KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 72.5 bits (178), Expect = 8e-15
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 233
           G L V +++  NL   D+   SDPYV + L Q        +TTI K+ LNP +NE     
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 265
           VP E      V + V D+D    +D +G+  +   
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 80.8 bits (200), Expect = 6e-19
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)

Query: 164 STNSSQKKDV-GMVEFI-------GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQ 211
           S+ SS  ++  G ++F          L VK++K   L  +D   +SDP+V + L    + 
Sbjct: 2   SSGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH 61

Query: 212 TVQTTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
            ++T + + NLNP WNE  +    P E    +   L+V D+D FS +D +GE  I +
Sbjct: 62  KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 19/104 (18%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL--------------GQQTVQTTIVKSNLNP 224
           G L + +++  NL  RD    SDP+V + L               +   +T  V+ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 225 VWNEEL-MLSVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
            WN+ +   S+  E    K   + V+D+D FS++D +GE  ID+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 167 SSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDM--MSSDPYVVLRL---GQQTVQ 214
           SS    +G + F            V + +   L   D   M+SDPY+ + +    +  V+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 215 TTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDIQPLLTS 270
           T +++  L+P ++E      +P            +   D FS DDI+GE  I +     S
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL-----S 116

Query: 271 ALAFGDPEMFGNMQI 285
            +   + +M  N +I
Sbjct: 117 GIELSEGKMLMNREI 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 78.6 bits (194), Expect = 4e-18
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQE 237
           L V  ++ +          D YV   +    G    QT + K  L+  W E L+L + +E
Sbjct: 28  LFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 238 YGP---VKLEVFDHDTFSADDIMGEAEIDI 264
             P   + L +   D FS   + GE  + +
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 78.6 bits (194), Expect = 5e-18
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 164 STNSSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQ 210
           S +S Q   +G +EF          L+  +++   L   D    +DPYV L L       
Sbjct: 6   SYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65

Query: 211 QTVQTTIVKSNLNPVWNEELMLS-VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
             ++T  +++  NPVWNE L    + +E    K   + V D D F  ++ +GE    +
Sbjct: 66  NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 83.1 bits (204), Expect = 1e-17
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 177 EFIGLLKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEE 229
           ++     V V++   +          + DPYV L +        +T    +++NPVWNE 
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74

Query: 230 LMLSVPQEYGPV-KLEVFDHDTFSADDIMGEAEIDIQP 266
               +      V ++ + D +    D+ +G A   +  
Sbjct: 75  FEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSS 111

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 180 GLLKVKVVKGINLAIRDMMS--SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELML 232
             L V V +   LA  D     S+PYV   L      Q   +T+I +  +NP+++E L  
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 233 SVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
            +P+     +     V+ H  F  +  +GEAEI +
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 165 TNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQT 212
           ++ S    +G ++           L V V    NL       SDPYV + L         
Sbjct: 2   SSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGR 61

Query: 213 VQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADD--IMGEAEIDI 264
            +T + K  LNPV+++    SV         + + V +   F + D  ++G+  + +
Sbjct: 62  RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV 234
            +L + +++G  L  +   + DPYV + L       +  +T  V    +P ++E     V
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 235 PQEYGPVKLE--VFDHDTFS-ADDIMGEAEIDIQPLLTS 270
            +E    +L   V++  + S    ++G     ++ LLT 
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP 125

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 233
             + V ++K  NL   D+  +SDPYV + L  +       +T   K NLNP++NE     
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 265
           +P E      + + V D D  S +D++G+  +  +
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 21/122 (17%)

Query: 164 STNSSQKKDVGMVEFI-------GLLKVKVVKGINLAIRDMM--------SSDPYVVLRL 208
           S +S  K  +GM+ F          L V+V++  +L               S+PYV + L
Sbjct: 3   SGSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL 62

Query: 209 ---GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGP---VKLEVFDHDTFSADDIMGEAEI 262
               + + QT + +    PV+ E     +P        + L V D D FS   ++G+  +
Sbjct: 63  LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122

Query: 263 DI 264
            +
Sbjct: 123 PL 124

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS- 233
           G L + V+   +L   D    +PYV   L          +T I +   NP +NE L+ S 
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79

Query: 234 VPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
             +E    +   L V   ++   +  +G   + +
Sbjct: 80  YSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 233
           G L V +++  NL   D+   SDPYV + L Q        +TTI K+ LNP +NE     
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDIQ 265
           VP E      V + V D+D    +D +G+  +   
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV-----QTTIVKSNLNPVWNEELMLS 233
           G L V +++ ++LA  D    SDP+V L L          +T I K  LNP +NEE    
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 234 VPQE-YGPVKLE--VFDHDTFSADDIMGEAEIDI 264
           +         L+  V+D+D   ++D +G  ++ I
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 233
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 234 -VPQEYGPVK---LEVFDHDTFSAD--DIMGEAEIDIQPLLTS 270
            V +     +   + ++D      +  + +GE  I+++  L  
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 120

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 233
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 234 -VPQEYGPVK---LEVFDHDTFSAD--DIMGEAEIDIQPLLTS 270
            V +     +   + ++D      +  + +GE  I+++  L  
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 123

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYG 239
            LL V V K      ++    + YV L++      TTI      P W ++ M  + +   
Sbjct: 5   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVK-STTIAVRGSQPSWEQDFMFEINRLDL 61

Query: 240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLED 299
            + +EV++      D ++G   I ++ +  S               G+WL  D  A++ D
Sbjct: 62  GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAIMAD 110

Query: 300 STI 302
           S I
Sbjct: 111 SEI 113

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 180 GLLKVKVVKGINLAIRDM-MSSDPYVVLRL------GQQTVQTTIVKSNLNPVWNEELML 232
               + +++  NL+           + + +           +T  + ++   V+NE   +
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 233 SVPQEYGPVK---LEVFDHDTFSADDIMGEAEIDI 264
           S+       K   ++V   D    ++ +G A+I +
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 233
             L V V+K  +L   D+   SDPYV + L          +T + K   N V+NE  +  
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 264
           +P E      V+  V D +  S ++++G   +  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 180 GLLKVKVVKGINLAIRDM--MSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELML 232
           G L+V+V++  +L  +     +  PYV + L          +T I +  L+P++ + L+ 
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 233 SVPQEYGPVKLEVF-DHDTFSADDIMGEAEIDI 264
               +   +++ V+ D+        MG A+I +
Sbjct: 90  DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 177 EFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ 236
             + LL V V K      ++    + YV L++      TTI      P W ++ M  + +
Sbjct: 11  GILSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVES-TTIAVRGSQPSWEQDFMFEINR 67

Query: 237 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 296
               + +EV++      D ++G   I ++ +  S               G+WL  D  A+
Sbjct: 68  LDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAI 116

Query: 297 LEDSTIN 303
           + DS I 
Sbjct: 117 MADSEIC 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 58/416 (13%), Positives = 114/416 (27%), Gaps = 142/416 (34%)

Query: 1   MSMRNNNNRPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVF-ICLKCC 59
           + +R   N  ++ G   SGK  +   +     ++   C             +F + LK C
Sbjct: 145 LELRPAKNVLID-GVLGSGKTWVALDVC-LSYKV--QCKMDF--------KIFWLNLKNC 192

Query: 60  GVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHE 119
                                S + V  M+          +     P   S    D S  
Sbjct: 193 N--------------------SPETVLEML--------QKLLYQIDPNWTS--RSDHSSN 222

Query: 120 IRSKFIRSKYELQEFL-----KPSLRIASGKPSASLQSSFSRKIIDSF----------RS 164
           I+ +    + EL+  L     +  L +        L +  + K  ++F          R 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLV--------LLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 165 TN------SSQKKDVGMVE----------------FIGL----LKVKVVKGINLAI---- 194
                   ++    + +                  ++      L  +V+      +    
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 195 ---RDMMS-SDPYVVLRLGQQTVQTTIVKS--NLNPVWNEELMLSVPQEYGPVKLEVFDH 248
              RD ++  D +    +    + T I  S   L P    E      + +   +L VF  
Sbjct: 335 ESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEP---AEYR----KMF--DRLSVFPP 383

Query: 249 D------TFS---ADDIMGEAEIDIQPLLTSALAFGDPEMFG----NMQIGKWLKSDDNA 295
                    S    D I  +  + +  L   +L    P+       ++ +   +K ++  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 296 LL----------------EDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335
            L                +D     +D      I   L+N+E  E       + LD
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 156 RKIIDSFRSTNSSQKKDVGMV-----EFIGLLKVKVVKGINL-AIRDMMSSDPYVVLRLG 209
           +   + +  T   Q++            IG L V V++   L A +    S+PY  + +G
Sbjct: 358 KAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417

Query: 210 QQTVQTTIVKSNLNPVWN--EELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 267
            Q+  T  ++  LNP WN   +  +    +   + L +FD D FS DD +G  EI +  +
Sbjct: 418 SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQ-DVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476

Query: 268 LTSA 271
            T  
Sbjct: 477 RTEQ 480

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 10/93 (10%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPV-WNEEL--MLSVPQEY 238
           L V +     L  R    +D    +    Q+  + ++++  +   ++E     ++   + 
Sbjct: 23  LIVHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 239 G-PVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
              +++++F++    ++ ++G   + +Q ++  
Sbjct: 79  NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEE 111

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 20/164 (12%), Positives = 38/164 (23%), Gaps = 17/164 (10%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIV----KSNLNPVWNEELMLSVPQE 237
           LK+ +++   L  +       Y  L L       T       S     W E    +    
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 238 YGPVKLEVF----DHDTFSADDIMGEAEIDIQPLLTSALAFG-----DPEMFGNMQIGKW 288
              ++L ++              +G   + +  L              P   G       
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGS 128

Query: 289 LKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332
                +              V+ K   +  ++   EL  E    
Sbjct: 129 GGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEY 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	100.0
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	100.0
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	100.0
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	100.0
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	100.0
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	100.0
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.97
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.87
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.86
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.86
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.86
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.84
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.81
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.81
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.77
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.76
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.75
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.75
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.74
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.74
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.74
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.74
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.72
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.72
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.72
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.71
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.71
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.7
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.7
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.7
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.69
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.69
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.68
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.68
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.65
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.65
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.61
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.58
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.53
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.52
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.51
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.49
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.33
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.15
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.14
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.12
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.11
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.06
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	91.14
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.09
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	81.98
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	80.96
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	80.81

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=3.4e-45  Score=298.16  Aligned_cols=131  Identities=41%  Similarity=0.770  Sum_probs=118.4

Q ss_pred             CCCCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHH
Q 019768           10 PLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMI   89 (336)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~   89 (336)
                      ...+.+++++++.|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||+|++++|+.|+
T Consensus         7 ~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~   86 (141)
T 2crr_A            7 GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQ   86 (141)
T ss_dssp             CCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHH
Confidence            44455667899999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HhccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccccCC
Q 019768           90 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASG  144 (336)
Q Consensus        90 ~~ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~~s~  144 (336)
                      . +||..||++||+++|+.+.+|.++   ..+++||++||++++|+.+.....+.
T Consensus        87 ~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~~~~~  137 (141)
T 2crr_A           87 D-MGNTKARLLYEANLPENFRRPQTD---QAVEFFIRDKYEKKKYYDKNAIAISG  137 (141)
T ss_dssp             H-THHHHHHHHGGGSCCTTCCCCCSH---HHHHHHHHHHHTSCTTCCCGGGCCCC
T ss_pred             H-HccHHHHHHHHhcCCcccCCCCch---HHHHHHHHHHHhcCcccCCCccccCC
Confidence            6 599999999999999987777653   46899999999999999887555444

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=2.6e-45  Score=296.29  Aligned_cols=125  Identities=46%  Similarity=0.903  Sum_probs=111.1

Q ss_pred             CCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhc
Q 019768           13 LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVG   92 (336)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~g   92 (336)
                      ..+.|++++.|++|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+|||+||||+||+|++++|+.|.. +
T Consensus         8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~-~   86 (134)
T 2iqj_A            8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQE-M   86 (134)
T ss_dssp             -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHT-C
T ss_pred             HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHH-H
Confidence            344577899999999999999999999999999999999999999999999999999999999999999999999965 6


Q ss_pred             cccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccc
Q 019768           93 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI  141 (336)
Q Consensus        93 gN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~  141 (336)
                      ||..||++||+++|+.+.+|.++   ..+++||++||++++|+.+...+
T Consensus        87 GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~i  132 (134)
T 2iqj_A           87 GNGKANRLYEAYLPETFRRPQID---PAVEGFIRDKYEKKKYMDRSLDI  132 (134)
T ss_dssp             HHHHHHHHHTTTCCSSCCCCCSH---HHHHHHHHHHHTSCTTCCTTC--
T ss_pred             chHHHHHHHHhcCCccCCCCCch---HHHHHHHHHHHhCCeeeCCcccc
Confidence            99999999999999987777553   46899999999999999887544

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=2.2e-42  Score=281.26  Aligned_cols=123  Identities=22%  Similarity=0.491  Sum_probs=109.7

Q ss_pred             CCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccc
Q 019768           15 KPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGN   94 (336)
Q Consensus        15 ~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN   94 (336)
                      ++|++++.|++|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+| |+||||+||+|++++|+.|.. |||
T Consensus         8 ~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~-~GN   85 (140)
T 2olm_A            8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK-HGN   85 (140)
T ss_dssp             HHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH-CHH
T ss_pred             HHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH-hcc
Confidence            346788999999999999999999999999999999999999999999999997 999999999999999999976 699


Q ss_pred             cccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCccc
Q 019768           95 SSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSLR  140 (336)
Q Consensus        95 ~~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~  140 (336)
                      ..+|++||+++++. .++|.+. +...+++||++||++++|+.|...
T Consensus        86 ~~an~~~e~~~~~~~~~~P~~~-d~~~~~~fIr~KYe~k~f~~~~~~  131 (140)
T 2olm_A           86 EVCKQIWLGLFDDRSSAIPDFR-DPQKVKEFLQEKYEKKRWYVPPEQ  131 (140)
T ss_dssp             HHHHHHHTTTCCTTTSCCCCTT-CHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred             HHHHHHHHhhCCcccCCCCCCC-CHHHHHHHHHHHHcCCeeeCCccc
Confidence            99999999999763 3455443 345788899999999999987643

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=100.00  E-value=6.2e-38  Score=299.68  Aligned_cols=124  Identities=44%  Similarity=0.811  Sum_probs=117.7

Q ss_pred             CCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcc
Q 019768           14 GKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGG   93 (336)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~gg   93 (336)
                      .++++++++|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+| +|||+||||+||.|++++|+.|.. +|
T Consensus        16 ~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~-~g   93 (386)
T 3lju_X           16 FQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HG   93 (386)
T ss_dssp             HHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH-SS
T ss_pred             hhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH-hc
Confidence            4456789999999999999999999999999999999999999999999999 999999999999999999999976 59


Q ss_pred             ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019768           94 NSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL  139 (336)
Q Consensus        94 N~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~  139 (336)
                      |..||++||+++|+...+|.++++...|++||++||++++|+.|..
T Consensus        94 N~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~  139 (386)
T 3lju_X           94 NDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK  139 (386)
T ss_dssp             HHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred             chHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence            9999999999999988899999999999999999999999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=100.00  E-value=1.2e-37  Score=296.76  Aligned_cols=123  Identities=41%  Similarity=0.739  Sum_probs=113.9

Q ss_pred             CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019768           16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS   95 (336)
Q Consensus        16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~   95 (336)
                      ++++++.|+.|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||.|++++|+.|.. +||.
T Consensus        29 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~-~gn~  107 (368)
T 3jue_A           29 PGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE-LGNV  107 (368)
T ss_dssp             ---CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-SCHH
T ss_pred             hhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHH-HccH
Confidence            456889999999999999999999999999999999999999999999999999999999999999999999986 5999


Q ss_pred             ccchhhhhccCC-CCCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019768           96 SANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL  139 (336)
Q Consensus        96 ~~n~~~e~~~~~-~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~  139 (336)
                      .+|++||+++|+ ...+|.|+++.+.|++||++||++++|+.+..
T Consensus       108 ~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~  152 (368)
T 3jue_A          108 IINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP  152 (368)
T ss_dssp             HHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred             HHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence            999999999986 45789999999999999999999999997743

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1e-36  Score=246.47  Aligned_cols=109  Identities=28%  Similarity=0.505  Sum_probs=93.9

Q ss_pred             HHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccch
Q 019768           20 KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANA   99 (336)
Q Consensus        20 ~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~   99 (336)
                      ++.++.|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+|||++||+|++++|+.|+. |||.++|+
T Consensus        24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~-~GN~~an~  102 (138)
T 2owa_A           24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI-GGNGRARN  102 (138)
T ss_dssp             HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHH-CCHHHHHH
T ss_pred             HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHh-hccHHHHH
Confidence            34456699999999999999999999999999999999999999999999999999999999999999975 69999999


Q ss_pred             hhhhccCCCCCCCCCCCCHHHHHHHHHhhhccce
Q 019768          100 IYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQE  133 (336)
Q Consensus       100 ~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~  133 (336)
                      +||++....   | +.+..+..+.|+..+|+++.
T Consensus       103 ~~e~~~~~~---~-~~~~~~kY~s~~a~~Y~~kL  132 (138)
T 2owa_A          103 YFKQVLGVN---F-SPKTKEYASSICGRQYKQIL  132 (138)
T ss_dssp             HHHHHTCTT---C-CGGGCHHHHSHHHHHHHHHH
T ss_pred             HHHHHcCCC---C-CCCHHHHHhhHHHHHHHHHH
Confidence            999864332   2 11233455789999998874

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=6.9e-37  Score=249.97  Aligned_cols=90  Identities=41%  Similarity=0.733  Sum_probs=84.9

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC-CCHHHHHHHHHhcccc
Q 019768           17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD-WSDDEVDAMIEVGGNS   95 (336)
Q Consensus        17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~-~~~~~~~~~~~~ggN~   95 (336)
                      +..++.|++|++.|+|+.|||||+++|+|||+|||||||++|||+||.||+|||+|||++||. |++++|+.|+ .|||.
T Consensus        14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~-~~GN~   92 (149)
T 2crw_A           14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ-VGGNA   92 (149)
T ss_dssp             HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH-HHhhH
Confidence            457889999999999999999999999999999999999999999999999999999999995 9999999996 57999


Q ss_pred             ccchhhhhccCC
Q 019768           96 SANAIYEAFIPE  107 (336)
Q Consensus        96 ~~n~~~e~~~~~  107 (336)
                      ++|++||++.+.
T Consensus        93 ~an~~~e~~~~~  104 (149)
T 2crw_A           93 SASSFFHQHGCS  104 (149)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHhcCCC
Confidence            999999998754

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=240.45  Aligned_cols=88  Identities=41%  Similarity=0.819  Sum_probs=82.5

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019768           17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS   96 (336)
Q Consensus        17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~   96 (336)
                      +++++.|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||+|+++||+.|+. |||.+
T Consensus        23 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~-~GN~~  101 (147)
T 3dwd_A           23 PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGNAK  101 (147)
T ss_dssp             HHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHH-CCHHH
T ss_pred             HHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHH-HhhHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999975 79999


Q ss_pred             cchhhhhcc
Q 019768           97 ANAIYEAFI  105 (336)
Q Consensus        97 ~n~~~e~~~  105 (336)
                      +|++||+..
T Consensus       102 an~~~ea~~  110 (147)
T 3dwd_A          102 FREFLESQE  110 (147)
T ss_dssp             HHHHHHTST
T ss_pred             HHHHHHhCC
Confidence            999999863

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.2e-34  Score=234.88  Aligned_cols=90  Identities=34%  Similarity=0.730  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhC-CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019768           18 SGKGRLKDLLLQ-RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS   96 (336)
Q Consensus        18 ~~~~~l~~~~~~-~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~   96 (336)
                      .+++.|++|.+. |+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||.|++++|+.|.. |||.+
T Consensus         7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~-~GN~~   85 (163)
T 3sub_A            7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDK-GGNKK   85 (163)
T ss_dssp             HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHH-CCHHH
T ss_pred             HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHh-hCHHH
Confidence            467889999985 8999999999999999999999999999999999999999999999999999999999965 79999


Q ss_pred             cchhhhhccCCC
Q 019768           97 ANAIYEAFIPEG  108 (336)
Q Consensus        97 ~n~~~e~~~~~~  108 (336)
                      +|.+||++.+.+
T Consensus        86 an~~~e~~g~~~   97 (163)
T 3sub_A           86 CQTYLENYGISD   97 (163)
T ss_dssp             HHHHHHHTTCTT
T ss_pred             HHHHHHHcCCcc
Confidence            999999986654

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=232.70  Aligned_cols=87  Identities=41%  Similarity=0.760  Sum_probs=81.0

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC-CCHHHHHHHHHhccccc
Q 019768           18 SGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD-WSDDEVDAMIEVGGNSS   96 (336)
Q Consensus        18 ~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~-~~~~~~~~~~~~ggN~~   96 (336)
                      ..++.|+.|++.|+|+.|||||+++|+|||+|||||||+.|||+||+||+|||+|||++||. |++++|+.|+. |||.+
T Consensus        23 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~-~GN~~  101 (144)
T 2p57_A           23 EIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQV-GGNAN  101 (144)
T ss_dssp             HHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHH-CCHHH
T ss_pred             HHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHH-hCHHH
Confidence            45666778888999999999999999999999999999999999999999999999999996 99999999964 79999


Q ss_pred             cchhhhhcc
Q 019768           97 ANAIYEAFI  105 (336)
Q Consensus        97 ~n~~~e~~~  105 (336)
                      ||++||+..
T Consensus       102 an~~~e~~g  110 (144)
T 2p57_A          102 ATAFFRQHG  110 (144)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999873

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.97  E-value=8.1e-33  Score=256.53  Aligned_cols=123  Identities=35%  Similarity=0.614  Sum_probs=112.6

Q ss_pred             CCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcc
Q 019768           14 GKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGG   93 (336)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~gg   93 (336)
                      ..++..++.|++|++.|+|+.|||||+++|+|||+|+|+|+|++|||+||+||+|||+|||++||.|+++++..|.. +|
T Consensus        24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~-~G  102 (301)
T 2b0o_E           24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MG  102 (301)
T ss_dssp             ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-CC
T ss_pred             CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH-cC
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999999976 49


Q ss_pred             ccccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCC
Q 019768           94 NSSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKP  137 (336)
Q Consensus        94 N~~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~  137 (336)
                      |..+|.+||+.+|.. ..+|.+.++...|+.||++||+.+.|..+
T Consensus       103 N~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~  147 (301)
T 2b0o_E          103 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR  147 (301)
T ss_dssp             HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred             CHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence            999999999999875 67899988999999999999999998765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.97  E-value=2.9e-32  Score=250.02  Aligned_cols=120  Identities=35%  Similarity=0.677  Sum_probs=111.9

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019768           17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS   96 (336)
Q Consensus        17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~   96 (336)
                      |..++.|++|++.|+|+.|||||+++|+|+|+|+|+|+|++|||+||+||+|||+|||++||.|+++++..|.. +||..
T Consensus         2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~-~GN~~   80 (278)
T 1dcq_A            2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAG   80 (278)
T ss_dssp             -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHH
T ss_pred             chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH-cCcHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999976 59999


Q ss_pred             cchhhhhccCCCC-CCCCCCCCHHHHHHHHHhhhccceecCC
Q 019768           97 ANAIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP  137 (336)
Q Consensus        97 ~n~~~e~~~~~~~-~~p~~~~~~~~r~~fI~~KY~~k~~~~~  137 (336)
                      +|++||+.+|... .+|.+.++...+++||+.||..+.|..+
T Consensus        81 ~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~  122 (278)
T 1dcq_A           81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK  122 (278)
T ss_dssp             HHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccc
Confidence            9999999998764 3888988899999999999999998765

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.97  E-value=5.4e-32  Score=267.44  Aligned_cols=122  Identities=35%  Similarity=0.623  Sum_probs=113.0

Q ss_pred             CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019768           16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS   95 (336)
Q Consensus        16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~   95 (336)
                      ++.+++.++.+++.|+|+.|||||+++|+|+|+|+|||+|++|||+||+||+|||+|||++||.|+++++..|.. +||.
T Consensus         7 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~-~GN~   85 (497)
T 3lvq_E            7 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGNT   85 (497)
T ss_dssp             -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-CCHH
T ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-HhhH
Confidence            456889999999999999999999999999999999999999999999999999999999999999999999976 5999


Q ss_pred             ccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768           96 SANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPS  138 (336)
Q Consensus        96 ~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~  138 (336)
                      .+|.+||+.+|.. ..+|.+.++...|+.||++||+++.|..+.
T Consensus        86 ~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~  129 (497)
T 3lvq_E           86 SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC  129 (497)
T ss_dssp             HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence            9999999999864 468888889999999999999999998654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=4.3e-29  Score=234.31  Aligned_cols=94  Identities=38%  Similarity=0.766  Sum_probs=84.6

Q ss_pred             CCCCCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHH
Q 019768            9 RPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAM   88 (336)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~   88 (336)
                      +||++   +++++.|++|++.|+|+.|||||+++|+|||+|+|||+|++|||+||+||+|||+|||++||+|++++|+.|
T Consensus        17 ~~~~~---~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~   93 (329)
T 3o47_A           17 QGMAS---PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM   93 (329)
T ss_dssp             ---------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHH
T ss_pred             cccCC---HHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHH
Confidence            45543   568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccccchhhhhccC
Q 019768           89 IEVGGNSSANAIYEAFIP  106 (336)
Q Consensus        89 ~~~ggN~~~n~~~e~~~~  106 (336)
                      .. +||.++|++||+...
T Consensus        94 ~~-~gN~~~n~~~e~~~~  110 (329)
T 3o47_A           94 KA-GGNAKFREFLESQED  110 (329)
T ss_dssp             HH-CCHHHHHHHHHTCSS
T ss_pred             HH-hCcHHHHHHHHhcCC
Confidence            76 699999999998754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.87  E-value=1e-21  Score=160.43  Aligned_cols=127  Identities=26%  Similarity=0.412  Sum_probs=109.1

Q ss_pred             ceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019768          174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  251 (336)
Q Consensus       174 g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~  251 (336)
                      +.....|.|+|+|++|++|+..+.. .+||||+++++.++++|++++ +++||+|||+|.|.+......|.|+|||++.+
T Consensus         4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence            3456789999999999999998876 899999999999999999998 89999999999999987678899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      ++|++||.+.|+|.++...           +.....||+|.                        ......|+|+|+++|
T Consensus        84 ~~d~~lG~~~i~l~~l~~~-----------~~~~~~w~~L~------------------------~~~~~~G~i~l~l~~  128 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVE-----------GSIPPTAYNVV------------------------KDEEYKGEIWVALSF  128 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHH-----------SEEEEEEEEEE------------------------ETTEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEHHHhccC-----------CCCCcEEEEee------------------------cCCccCEEEEEEEEE
Confidence            9999999999999998532           23456788631                        234567999999999


Q ss_pred             EeCC
Q 019768          332 MPLD  335 (336)
Q Consensus       332 ~~~~  335 (336)
                      .|..
T Consensus       129 ~p~~  132 (136)
T 1wfj_A          129 KPSG  132 (136)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9975

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=1.3e-21  Score=159.34  Aligned_cols=126  Identities=29%  Similarity=0.479  Sum_probs=107.9

Q ss_pred             cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019768          173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  251 (336)
Q Consensus       173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~  251 (336)
                      .+.....|.|.|+|++|++|+..+.. .+||||++++++++++|+++++++||+|||+|.|.+......|.|+|||++.+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~   85 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD   85 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence            45667889999999999999998876 89999999999999999999999999999999999987667899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      ++|++||++.++|.++..+              ...||+|.+..                     ......|+|+|+++|
T Consensus        86 ~~~~~lG~~~i~l~~l~~~--------------~~~w~~L~~~~---------------------~~~~~~G~i~l~i~~  130 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDG--------------QPNCYVLKNKD---------------------LEQAFKGVIYLEMDL  130 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSS--------------CCEECCCBCSC---------------------TTSCCSSEEEEEEEE
T ss_pred             CCCCeeEEEEEEHHHccCC--------------CceEEEeecCC---------------------CCCccceEEEEEEEE
Confidence            8999999999999998421              13799865421                     123467999999998


Q ss_pred             Ee
Q 019768          332 MP  333 (336)
Q Consensus       332 ~~  333 (336)
                      +.
T Consensus       131 ~~  132 (133)
T 2ep6_A          131 IY  132 (133)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=163.21  Aligned_cols=123  Identities=23%  Similarity=0.420  Sum_probs=101.0

Q ss_pred             cceeEEEEEEEEEEEeeeecccCCC-----------CCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCc
Q 019768          173 VGMVEFIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGP  240 (336)
Q Consensus       173 ~g~~~~~g~L~V~v~~a~~L~~~~~-----------~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~  240 (336)
                      .++..+.|.|+|+|++|++|+..|.           ..+||||++.+++++ .+|+++++|+||+|||+|.|.+.. ...
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~  100 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH  100 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred             chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence            4577889999999999999998772           258999999998876 599999999999999999999865 368


Q ss_pred             eEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccc
Q 019768          241 VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV  320 (336)
Q Consensus       241 L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~  320 (336)
                      |.|+|||++.+++|++||.+.|+|.++..+..        .+...+.||+                          |+  
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~--------~~~~~~~W~~--------------------------L~--  144 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRTTG--------ASDTFEGWVD--------------------------LE--  144 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHT--------TCSEEEEEEE--------------------------CB--
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcccC--------CCCcccEEEE--------------------------CC--
Confidence            99999999999999999999999999864310        1245677876                          32  


Q ss_pred             ccceEEEEEEEE
Q 019768          321 ESGELELELEWM  332 (336)
Q Consensus       321 ~~G~i~l~l~~~  332 (336)
                      +.|+|+|+++|.
T Consensus       145 ~~G~i~l~l~~~  156 (157)
T 2fk9_A          145 PEGKVFVVITLT  156 (157)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCcEEEEEEEEE
Confidence            378999999873

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.86  E-value=8.8e-21  Score=157.13  Aligned_cols=125  Identities=27%  Similarity=0.508  Sum_probs=102.7

Q ss_pred             cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019768          173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  251 (336)
Q Consensus       173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~  251 (336)
                      .|+..+.|.|.|+|++|++|+..+.. .+||||+++++.+.++|+++++++||.|||+|.|.+......|.|+|||++.+
T Consensus        10 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           10 DGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDD   89 (148)
T ss_dssp             -----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred             ccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCC
Confidence            46777899999999999999998876 89999999999999999999999999999999999987668899999999986


Q ss_pred             -----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccc
Q 019768          252 -----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV  320 (336)
Q Consensus       252 -----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~  320 (336)
                                 ++|++||++.++|.++.              ...+.||+|....                     ....
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--------------~~~~~w~~L~~~~---------------------~~~~  134 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLS--------------GEMDVWYNLDKRT---------------------DKSA  134 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCC--------------SEEEEEEECBCSS---------------------TTCC
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCc--------------CCCCEEEEcccCC---------------------CCCC
Confidence                       78999999999999872              1346899864311                     0223


Q ss_pred             ccceEEEEEEEE
Q 019768          321 ESGELELELEWM  332 (336)
Q Consensus       321 ~~G~i~l~l~~~  332 (336)
                      ..|+|+|+|+|.
T Consensus       135 ~~G~i~l~l~~e  146 (148)
T 3kwu_A          135 VSGAIRLHISVE  146 (148)
T ss_dssp             CCCEEEEEEEEE
T ss_pred             CceEEEEEEEEE
Confidence            568999988874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=7.7e-21  Score=155.92  Aligned_cols=124  Identities=23%  Similarity=0.336  Sum_probs=102.7

Q ss_pred             EEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCCCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSA  253 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~~~  253 (336)
                      ..|.|.|+|++|++|+..+...+||||+++++.++++|+++++++||+|||+|.|.+..    ....|.|+|||++.+++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~   84 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ   84 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence            46889999999999998877778999999999999999999999999999999999864    35789999999999999


Q ss_pred             CCeeEEEEEeCcccccccccCCCCCccCceeeceeee---cCCcccccccceeeecCeEEEEEEEEecccccceEEEEEE
Q 019768          254 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK---SDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE  330 (336)
Q Consensus       254 dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~---l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~  330 (336)
                      |++||++.++|.++..            +...+.||+   +.+           ..+           ....|+|+|+++
T Consensus        85 ~~~lG~~~i~l~~l~~------------~~~~~~w~~l~~l~~-----------~~~-----------~~~~G~l~l~~~  130 (140)
T 2dmh_A           85 NKLIGTATVALKDLTG------------DQSRSLPYKLISLLN-----------EKG-----------QDTGATIDLVIG  130 (140)
T ss_dssp             CCCCEEEEEEGGGTCS------------SSCEEEEEEEEEEEC-----------TTC-----------CEEEEEEEEEEE
T ss_pred             CceEEEEEEEHHHhcc------------CCCceeEEeeeeccC-----------CCC-----------CCCCCEEEEEEE
Confidence            9999999999999853            234566875   211           001           123599999999


Q ss_pred             EEeCC
Q 019768          331 WMPLD  335 (336)
Q Consensus       331 ~~~~~  335 (336)
                      |.|.+
T Consensus       131 ~~p~~  135 (140)
T 2dmh_A          131 YDPPS  135 (140)
T ss_dssp             ECCCB
T ss_pred             EECCC
Confidence            99865

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.85  E-value=6.6e-21  Score=155.81  Aligned_cols=119  Identities=24%  Similarity=0.495  Sum_probs=99.5

Q ss_pred             eEEEEEEEEEEEeeeecccCCCC-C-----------CCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceE
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMM-S-----------SDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVK  242 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~-~-----------~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~  242 (336)
                      ..+.|.|+|+|++|++|+..+.. .           +||||++.+++.. .+|+++.+++||+|||+|.|.+... ..|.
T Consensus         2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~   80 (136)
T 1gmi_A            2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred             cccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEE
Confidence            35789999999999999987743 3           8999999998766 5999999999999999999998765 7899


Q ss_pred             EEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccccc
Q 019768          243 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES  322 (336)
Q Consensus       243 v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~  322 (336)
                      |+|||++.+++|++||.+.++|.++....          ....+.||+                          ++  +.
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~----------~~~~~~w~~--------------------------L~--~~  122 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNG----------SRHFEDWID--------------------------LE--PE  122 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTT----------CSEEEEEEE--------------------------CB--SS
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccC----------CCCccEEEE--------------------------cC--CC
Confidence            99999999999999999999999986421          123466765                          32  47


Q ss_pred             ceEEEEEEEEe
Q 019768          323 GELELELEWMP  333 (336)
Q Consensus       323 G~i~l~l~~~~  333 (336)
                      |+|+|+++|.+
T Consensus       123 G~i~l~l~~~~  133 (136)
T 1gmi_A          123 GKVYVIIDLSG  133 (136)
T ss_dssp             CEEEEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            99999999976

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=1.8e-20  Score=156.10  Aligned_cols=129  Identities=31%  Similarity=0.545  Sum_probs=99.6

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  250 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~  250 (336)
                      ..|.|+|+|++|++|+..+.. .+||||++++..      ..++|+++++++||+|||+|.|.+......|.|+|||++.
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~   97 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR   97 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCS
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCC
Confidence            468899999999999998876 889999999953      5789999999999999999999998766789999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEE
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE  330 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~  330 (336)
                      +++|++||++.|+|.++..+....      .......||+|....                     -.....|+|+|+++
T Consensus        98 ~~~d~~iG~~~i~l~~l~~~~~~~------~~~~~~~w~~L~~~~---------------------~~~~~~G~i~l~l~  150 (153)
T 3b7y_A           98 LTRDDFLGQVDVPLYPLPTENPRL------ERPYTFKDFVLHPRS---------------------HKSRVKGYLRLKMT  150 (153)
T ss_dssp             SSCCEEEEEEEEECCSCCBCCTTS------CCCCCCEEEECBCSS---------------------TTCCCCSEEEEEEE
T ss_pred             CcCCCeeEEEEEEHHHcccCCCcc------ccccccccccccccc---------------------CCCCcceEEEEEEE
Confidence            999999999999999986542110      011235799864411                     02245799999999


Q ss_pred             EEe
Q 019768          331 WMP  333 (336)
Q Consensus       331 ~~~  333 (336)
                      |+|
T Consensus       151 ~~P  153 (153)
T 3b7y_A          151 YLP  153 (153)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            987

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.84  E-value=2.3e-20  Score=159.34  Aligned_cols=129  Identities=32%  Similarity=0.548  Sum_probs=96.2

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~  251 (336)
                      .|.|.|+|++|++|+..+.. .+||||+++++.      ..++|+++++++||+|||.|.|.+......|.|+|||++.+
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~   86 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL   86 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC--
T ss_pred             cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCC
Confidence            68999999999999998876 899999999964      57899999999999999999999987667899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      ++|++||.+.|+|..+........      ......||+|.....                     .....|+|+|+|.|
T Consensus        87 ~~d~~lG~~~i~l~~l~~~~~~~~------~~~~~~w~~L~~~~~---------------------~~~~~G~l~l~l~~  139 (176)
T 3m7f_B           87 TRDDFLGQVDVPLYPLPTENPRME------RPYTFKDFVLHPRSH---------------------KSRVKGYLRLKMTY  139 (176)
T ss_dssp             --CEEEEEEEEESCSCCBC------------CCCCEEEECBCSST---------------------TCCCCSEEEEEEEE
T ss_pred             CCCcEEEEEEEEHHHccccCCccc------ccccccEEEccccCC---------------------CCccCEEEEEEEEE
Confidence            999999999999999864321100      011226888644111                     22357999999999


Q ss_pred             EeC
Q 019768          332 MPL  334 (336)
Q Consensus       332 ~~~  334 (336)
                      +|.
T Consensus       140 ~p~  142 (176)
T 3m7f_B          140 LPK  142 (176)
T ss_dssp             CC-
T ss_pred             EeC
Confidence            874

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=2.2e-19  Score=152.86  Aligned_cols=129  Identities=21%  Similarity=0.344  Sum_probs=101.4

Q ss_pred             EEEEEEEEEEeeeecc-cCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCe
Q 019768          178 FIGLLKVKVVKGINLA-IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI  256 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~-~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~  256 (336)
                      ..+.|.|+|++|++|+ ..+...+||||+++++++.++|+++++++||+|||+|.|.+.. ...|.|+|||++.+++|++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            4678999999999999 5555579999999999999999999999999999999999864 6789999999999999999


Q ss_pred             eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768          257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD  335 (336)
Q Consensus       257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~  335 (336)
                      ||.+.++|.++..+...       ....+..|++|...                     .-.....|+|.|.|.|++++
T Consensus       113 lG~~~i~l~~l~~~~~~-------~~~~~~~~~~L~~~---------------------~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNM-------KLEEVVVTLQLGGD---------------------KEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             EEEEEEEHHHHHHHTTT-------EESSEEEEEEEEES---------------------SCTTSEEEEEEEEEESEECC
T ss_pred             EEEEEEEHHHhcccCCC-------CcceeEEEEECccC---------------------CCCCcccEEEEEEEeeeecc
Confidence            99999999998654210       01123457653220                     00123579999999999875

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=8.3e-20  Score=146.93  Aligned_cols=89  Identities=22%  Similarity=0.443  Sum_probs=78.7

Q ss_pred             EEEEEEEEEeeeecccC---CC-CCCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIR---DM-MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~---~~-~~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~  250 (336)
                      .|.|.|+|++|++|+..   +. +.+||||++++++   ..++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            47899999999999984   43 3789999999974   78899999999999999999999954 56789999999998


Q ss_pred             CCCCCeeEEEEEeCcccc
Q 019768          251 FSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~  268 (336)
                      + +|++||.+.++|.++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~   98 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMK   98 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSC
T ss_pred             C-CCceeEEEEEEHHHcc
Confidence            7 5899999999999884

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=3.3e-18  Score=138.86  Aligned_cols=88  Identities=23%  Similarity=0.419  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC---
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA---  253 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~---  253 (336)
                      ..|+|+|++|++|+..+.. .+||||+++++.  +.++|+++++++||+|||.|.|.+... ..|.|+|||++.+++   
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~~   83 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQG   83 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSSTT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCCC
Confidence            4689999999999998876 899999999964  789999999999999999999998764 459999999999876   


Q ss_pred             CCeeEEEEEeCcccc
Q 019768          254 DDIMGEAEIDIQPLL  268 (336)
Q Consensus       254 dd~iG~~~i~l~~l~  268 (336)
                      |++||++.+++..+.
T Consensus        84 d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           84 AGFLGCVRLLSNAIS   98 (132)
T ss_dssp             TTEEEEEEECHHHHH
T ss_pred             CCceEEEEEeHHHhh
Confidence            899999999998874

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.77  E-value=1.8e-18  Score=140.98  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=88.7

Q ss_pred             eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEE
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVF  246 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~  246 (336)
                      ....|.|.|.|++|++|+....+.+||||++++     ...+++|+++++++||+|||+|.|. +..   ....|.|+||
T Consensus        16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            335688999999999999733338999999999     4567899999999999999999999 653   3468999999


Q ss_pred             ecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      |++.++++++||++.++|.++..            +.....||+|.+
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNL------------SKETVKWYQLTA  130 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCT------------TSCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEhhhccC------------CCCcceeEECCC
Confidence            99999999999999999999843            234678998654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=3.4e-18  Score=142.44  Aligned_cols=112  Identities=20%  Similarity=0.341  Sum_probs=92.1

Q ss_pred             eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeeccc--CCCCceEEEEEec
Q 019768          176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVP--QEYGPVKLEVFDH  248 (336)
Q Consensus       176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~V~d~  248 (336)
                      ....|.|.|+|++|++|+..+.+.+||||++++     ...+++|+++++++||+|||+|.|.+.  .....|.|+|||+
T Consensus        23 ~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           23 DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             EESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             ECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            344689999999999999988558999999999     335789999999999999999999984  3445699999999


Q ss_pred             CCCCC-CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768          249 DTFSA-DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE  298 (336)
Q Consensus       249 ~~~~~-dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~  298 (336)
                      +.+++ |++||++.++|.++...           +.....||+|.+.....
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~-----------~~~~~~W~~L~~~~~g~  142 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTP-----------DKEISGWYYLLGEHLGR  142 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC-------------CCEEEEEECBCTTGGG
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCC-----------CCccccEEECCChhhcc
Confidence            99877 99999999999998521           34567899987655443

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=145.02  Aligned_cols=102  Identities=13%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~  248 (336)
                      .+.|+|.|++|++|+..+.. .+||||++++..      .++||+++++++||+|||+|.|.+..   ....|.|+|||+
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~  121 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT  121 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence            47899999999999999876 899999999954      27899999999999999999999865   246799999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      +.++++++||++.++|.++..           .+.....||+|
T Consensus       122 d~~~~~d~iG~~~i~l~~l~~-----------~~~~~~~W~~L  153 (155)
T 2z0u_A          122 DRSHLEECLGGAQISLAEVCR-----------SGERSTRWYNL  153 (155)
T ss_dssp             CTTSCEEEEEEEEEECTTSCT-----------TCCCEEEEEEE
T ss_pred             CCCCCCcEEEEEEEEHHHccC-----------CCCccccceEc
Confidence            999999999999999998842           13346789874

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=5.1e-18  Score=141.19  Aligned_cols=103  Identities=29%  Similarity=0.497  Sum_probs=89.3

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .+.|+|+|++|++|+..+.. .+||||++++   +...++|+++++++||+|||+|.|.+..   ....|.|+|||++.+
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence            47899999999999998876 8999999999   4567899999999999999999999864   357899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++|++||++.++|.++..            +.....||+|.+
T Consensus       121 ~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~  150 (152)
T 1rsy_A          121 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQS  150 (152)
T ss_dssp             SCCEEEEEEEEEGGGCCC------------SSCEEEEEECBC
T ss_pred             CCCcEEEEEEEEchhccC------------CCCcceEEECCC
Confidence            999999999999998842            335678998643

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.75  E-value=4.3e-18  Score=140.00  Aligned_cols=102  Identities=29%  Similarity=0.500  Sum_probs=88.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++   +.+.++|+++++++||+|||+|.|.+..   ....|.|+|||++.+
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence            47899999999999998876 8999999999   5568899999999999999999999864   347899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  292 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~  292 (336)
                      ++|++||++.++|.++..            +.....||+|.
T Consensus       113 ~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~  141 (143)
T 3f04_A          113 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQ  141 (143)
T ss_dssp             SCCEEEEEEEEEGGGCCT------------TSCEEEEEECB
T ss_pred             CCCceEEEEEEEHHHccC------------CCCcceEEECc
Confidence            999999999999998843            33567899764

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.74  E-value=5.8e-18  Score=143.77  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=91.7

Q ss_pred             EEEEEEEEEEeeeecccCCC--CCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-ecC
Q 019768          178 FIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHD  249 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~-d~~  249 (336)
                      ..|.|.|+|++|++|+..+.  ..+||||++++..     ..++|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            46889999999999999884  3899999999843     378999999999999999999999776788999999 999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccc
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL  296 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~  296 (336)
                      .+++|++||.+.++|.++..            +.....||+|.....
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~------------~~~~~~W~~L~~~~~  142 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDL------------SSMVIGWYKLFPPSS  142 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCT------------TSCEEEEEECBCGGG
T ss_pred             CCCCCCEEEEEEEEHHHccc------------CCCcceeEECCCccc
Confidence            99999999999999999842            234678999876443

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=4.4e-18  Score=141.05  Aligned_cols=102  Identities=31%  Similarity=0.470  Sum_probs=88.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC--CCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE--YGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~V~d~~~  250 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++.     ...++|+++++++||+|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            47899999999999998876 89999999995     4678999999999999999999998752  3579999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +++|++||++.|+|.++..+             ..+.||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~-------------~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA-------------GVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-------------CEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcC-------------ccCCeEEccC
Confidence            99999999999999998521             2678998655

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=8.2e-18  Score=135.72  Aligned_cols=100  Identities=22%  Similarity=0.419  Sum_probs=81.7

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~  248 (336)
                      .|.|.|+|++|++|+..+.. .+||||++++     +...++|+++++++||+|||+|.|.+..    ....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            47899999999999998876 7899999999     4578999999999999999999999532    346899999999


Q ss_pred             CCCCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768          249 DTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS  291 (336)
Q Consensus       249 ~~~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l  291 (336)
                      +.+++  +++||.+.++|.++...           +  ..+||+|
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~-----------~--~~~W~~L  128 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLD-----------D--EPHWYKL  128 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCS-----------S--CEEEEEC
T ss_pred             CcCcCcCCceeEEEEEEccccCCC-----------c--CCccEEC
Confidence            99887  99999999999998531           1  5789975

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=136.91  Aligned_cols=103  Identities=29%  Similarity=0.461  Sum_probs=88.2

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~  250 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++.   ...++|+++++++||+|||+|.|.+..    ....|.|+|||++.
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~  104 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR  104 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence            58899999999999998876 89999999993   468899999999999999999998632    35679999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +++|++||++.++|.++..            +.....||+|..
T Consensus       105 ~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~  135 (141)
T 2d8k_A          105 FSRNDPIGEVSIPLNKVDL------------TQMQTFWKDLKP  135 (141)
T ss_dssp             SSSCEEEEEEEEETTTSCT------------TSCEEEEECCEE
T ss_pred             CCCCcEEEEEEEEhhhhcC------------CCCccEEEECcC
Confidence            9999999999999999853            234678998643

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2.1e-18  Score=141.62  Aligned_cols=103  Identities=28%  Similarity=0.497  Sum_probs=87.7

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCe--------------EEEeeeeCCCCCceeeceeeec-ccC---CCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ--------------TVQTTIVKSNLNPVWNEELMLS-VPQ---EYG  239 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~--------------~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~  239 (336)
                      .|.|.|.|++|++|+..+.. .+||||++++...              .++|+++++++||+|||.|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            57899999999999998876 8999999999652              4689999999999999999997 542   456


Q ss_pred             ceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       240 ~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .|.|+|||++.++++++||.+.|+|..+...            .....||+|.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~------------~~~~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL------------DNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGG------------TTCCEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccC------------CCCCeEEECCc
Confidence            8999999999999999999999999988532            23568998755

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=140.16  Aligned_cols=104  Identities=27%  Similarity=0.431  Sum_probs=88.4

Q ss_pred             EEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~  248 (336)
                      .+.|.|.|++|++|+..+ .. .+||||++++.     ..+++|+++++++||+|||+|.|.+...   ...|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            478999999999999887 33 89999999995     3478999999999999999999998763   34699999999


Q ss_pred             CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCc
Q 019768          249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  294 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~  294 (336)
                      +.+++|++||++.++|.++..+            .....||+|..+
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L~~~  135 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLD------------KKLDHCLPLHGK  135 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHH------------CCSEEEEECBCC
T ss_pred             CCCcCCcEEEEEEEEccccccc------------CCccceEECcCc
Confidence            9999999999999999998533            235689987663

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=1.3e-17  Score=136.62  Aligned_cols=102  Identities=22%  Similarity=0.417  Sum_probs=87.1

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecc-cC---CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v-~~---~~~~L~v~V~d~  248 (336)
                      .+.|.|.|++|++|+..+.. .+||||++++     +...++|+++++++||+|||+|.|.+ ..   ....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            37899999999999998876 8899999998     35678999999999999999999995 32   346899999999


Q ss_pred             CCCCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          249 DTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       249 ~~~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +.+++  +++||.+.++|.++...           +  ...||+|..
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~-----------~--~~~W~~L~~  133 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLD-----------D--EPHWYKLQT  133 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCS-----------S--EEEEEECBC
T ss_pred             CCCcCCCCceEEEEEEEccccCCC-----------C--CCceEECcc
Confidence            99887  99999999999987421           1  578998765

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.72  E-value=5.9e-18  Score=137.99  Aligned_cols=90  Identities=30%  Similarity=0.490  Sum_probs=80.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCC---CceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEY---GPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~---~~L~v~V~d~~  249 (336)
                      .|.|.|.|++|++|+..+.. .+||||++++..     .+++|+++++++||+|||+|.|.+....   ..|.|+|||++
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~   94 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD   94 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence            47899999999999998876 899999999953     4679999999999999999999986532   57999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .+++|++||++.++|..+.
T Consensus        95 ~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           95 KLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             SSSCCEEEEEEEESSSSCH
T ss_pred             CCCCCcEEEEEEEccccCC
Confidence            9999999999999998753

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=6.5e-17  Score=132.35  Aligned_cols=100  Identities=21%  Similarity=0.340  Sum_probs=82.9

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---C-eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---Q-QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~-~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~~  250 (336)
                      .+.|+|.|++|++   .+.. .+||||++++.   . ..++|+++++++||+|||+|.|.+...   ...|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            4789999999993   4544 88999999993   2 357999999999999999999998652   4579999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +++|++||++.++|.++..            +.....||+|..
T Consensus       102 ~~~dd~lG~~~i~l~~l~~------------~~~~~~W~~L~~  132 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTSV------------PLGAAQWGELKT  132 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSS------------CTTCCEEEECCC
T ss_pred             CCCCcEEEEEEEEcccccC------------cccccceeeCcC
Confidence            9999999999999998842            224567998654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.71  E-value=1e-17  Score=140.38  Aligned_cols=115  Identities=30%  Similarity=0.385  Sum_probs=88.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .|.|.|+|++|++|+..+.. .+||||++++..     ..++|+++++++||+|||+|.|.+...   ...|.|+|||++
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  103 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence            57899999999999998876 899999999842     467999999999999999999998652   356999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .+++|++||.+.|++..+-.+..+-.......+..+.+||+|..
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999986522110000000012345678888654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.71  E-value=1.6e-17  Score=140.28  Aligned_cols=90  Identities=30%  Similarity=0.444  Sum_probs=81.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+.. .+||||++++..     ..++|+++++++||+|||+|.|.+..   ....|.|+|||++
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  115 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD  115 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence            58899999999999998876 899999999964     67899999999999999999999865   2458999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .++++++||.+.|+|.++.
T Consensus       116 ~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          116 IGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             SSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCcEEEeEEEecccCC
Confidence            9999999999999998863

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.71  E-value=1.9e-17  Score=137.70  Aligned_cols=88  Identities=28%  Similarity=0.424  Sum_probs=74.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CCe---EEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQ---TVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~---~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+.. .+||||++++  +..   +++|+++++++||+|||+|.|.+...   ...|.|+|||++
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d  108 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE  108 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence            57899999999999998876 8899999999  443   67999999999999999999998763   357999999999


Q ss_pred             CCCCCCeeEEEEEeCcc
Q 019768          250 TFSADDIMGEAEIDIQP  266 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~  266 (336)
                      .++++++||.+.++|.+
T Consensus       109 ~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          109 RGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             TTSCCEEEEEEEESTTC
T ss_pred             CCCCCcEEEEEEECCCC
Confidence            99999999999999987

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=5.2e-17  Score=132.72  Aligned_cols=91  Identities=25%  Similarity=0.486  Sum_probs=80.5

Q ss_pred             EEEEEEEEEeeeecccCCC--CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+.  ..+||||++++.   ...++|+++++++||+|||+|.|. +..   ....|.|+|||++
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d  100 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence            5789999999999999886  378999999994   478999999999999999999995 654   2357999999999


Q ss_pred             CCCCCCeeEEEEEeCccccc
Q 019768          250 TFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~  269 (336)
                      .+++|++||++.++|.++..
T Consensus       101 ~~~~~~~lG~~~i~l~~l~~  120 (138)
T 1ugk_A          101 RFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCcEEEEEEEehhHccC
Confidence            99999999999999999853

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=6.6e-17  Score=133.55  Aligned_cols=90  Identities=24%  Similarity=0.401  Sum_probs=78.5

Q ss_pred             EEEEEEEEEeeeecccC-C------C-CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019768          179 IGLLKVKVVKGINLAIR-D------M-MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE  244 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~-~------~-~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~  244 (336)
                      .+.|.|+|++|++|+.. +      . ..+||||++++.   ...++|+++++++||+|||+|.|.+..   ....|.|+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~  104 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT  104 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence            47899999999999974 2      1 278999999995   357899999999999999999999864   23579999


Q ss_pred             EEecCCCCCCCeeEEEEEeCcccc
Q 019768          245 VFDHDTFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       245 V~d~~~~~~dd~iG~~~i~l~~l~  268 (336)
                      |||++.++++++||.+.++|.++.
T Consensus       105 V~d~d~~~~~~~iG~~~i~l~~l~  128 (147)
T 2enp_A          105 VVDFDKFSRHCVIGKVSVPLCEVD  128 (147)
T ss_dssp             EECCSTTCCSCCCEEEEEETTTSC
T ss_pred             EEECCCCcCCcEEEEEEEechhcC
Confidence            999999999999999999999984

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.70  E-value=4.6e-17  Score=133.66  Aligned_cols=91  Identities=27%  Similarity=0.519  Sum_probs=81.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeec-ccCC---CCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQE---YGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~-v~~~---~~~L~v~V~d~  248 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++..     ..++|+++++++||+|||+|.|. +...   ...|.|+|||+
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  107 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE  107 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence            57899999999999998876 889999999964     68899999999999999999998 5431   36799999999


Q ss_pred             CCCCCCCeeEEEEEeCccccc
Q 019768          249 DTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      +.+++|++||++.++|.++..
T Consensus       108 d~~~~d~~iG~~~i~l~~l~~  128 (142)
T 2chd_A          108 DKFGHNEFIGETRFSLKKLKA  128 (142)
T ss_dssp             CTTSCEEEEEEEEEEGGGCCT
T ss_pred             CCCCCCcEEEEEEEEHHHcCC
Confidence            999999999999999999853

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=5.8e-17  Score=133.02  Aligned_cols=103  Identities=22%  Similarity=0.294  Sum_probs=85.5

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~  250 (336)
                      .+.|.|.|++|++|+..+...+||||++++..     .+++|+++++++||+|||+|.|.+..   ....|.|+|||++.
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            47899999999999988754489999999932     57899999999999999999999864   23589999999998


Q ss_pred             CCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          251 FSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       251 ~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++.  +++||++.|+|..+..+            .....||+|..
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~L~~  135 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELA------------KGWTQWYDLTE  135 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTT------------TCBCCBCCCBC
T ss_pred             ccccCCcEEEEEEEeccccccc------------ccccceeeccC
Confidence            763  57999999999987432            24678998655

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=1.6e-16  Score=128.96  Aligned_cols=86  Identities=22%  Similarity=0.359  Sum_probs=72.9

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      +|.|.|+|++|++|..  .+.+||||++.  .+..+|+++. +++||.|||+|.|.+......|.|+|||++ +++|++|
T Consensus         4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   78 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   78 (131)
T ss_dssp             CEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred             ceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence            4789999999998853  33789999999  3344566665 699999999999999876678999999999 8899999


Q ss_pred             EEEEEeCccccc
Q 019768          258 GEAEIDIQPLLT  269 (336)
Q Consensus       258 G~~~i~l~~l~~  269 (336)
                      |++.|+|.++..
T Consensus        79 G~~~i~l~~l~~   90 (131)
T 2cjt_A           79 GTVWIPLRTIRQ   90 (131)
T ss_dssp             EEEEEEGGGSCB
T ss_pred             EEEEEEHHHhhh
Confidence            999999999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.68  E-value=3.8e-16  Score=142.80  Aligned_cols=103  Identities=29%  Similarity=0.489  Sum_probs=89.5

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .|.|.|+|++|++|+..+.. .+||||+++++   .+.++|+++++++||+|||+|.|.+..   ....|.|+|||++.+
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~   97 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF   97 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence            47899999999999998876 89999999994   357899999999999999999999864   246899999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      ++|++||++.++|.++..            +.....||+|..
T Consensus        98 ~~~~~lG~~~i~l~~l~~------------~~~~~~w~~L~~  127 (284)
T 2r83_A           98 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQS  127 (284)
T ss_dssp             SCCCEEEEEEEEGGGCCC------------SSCEEEEEECBC
T ss_pred             CCCceeEEEEEcchhccc------------CCcceeEEEeec
Confidence            999999999999999843            235678998754

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.68  E-value=3.1e-16  Score=154.83  Aligned_cols=93  Identities=31%  Similarity=0.512  Sum_probs=84.9

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd  255 (336)
                      ..|.|.|+|++|++|+..+.. .+||||++.++...++|+++++++||+|||+|.|.+.. ....|.|+|||+|.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            468999999999999998876 89999999999999999999999999999999999866 3467999999999999999


Q ss_pred             eeEEEEEeCcccccc
Q 019768          256 IMGEAEIDIQPLLTS  270 (336)
Q Consensus       256 ~iG~~~i~l~~l~~~  270 (336)
                      +||.+.++|.++..+
T Consensus       465 ~lG~~~~~l~~l~~~  479 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTE  479 (510)
T ss_dssp             EEEEEEEEHHHHHHH
T ss_pred             ceEEEEEEHHHhccc
Confidence            999999999998654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.65  E-value=1.5e-15  Score=128.38  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=73.7

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      .+.|.|+|++|++|..  ...+||||++.  .+..+|++++ +++||+|||+|.|.+......|.|+|||++ +++|++|
T Consensus        13 ~~~L~V~V~~A~~l~~--~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   87 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   87 (167)
T ss_dssp             CCEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEE
T ss_pred             eEEEEEEEEEEECCCC--CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceE
Confidence            6889999999998842  33789999999  3345677776 599999999999999876678999999999 8899999


Q ss_pred             EEEEEeCccccc
Q 019768          258 GEAEIDIQPLLT  269 (336)
Q Consensus       258 G~~~i~l~~l~~  269 (336)
                      |++.|+|.++..
T Consensus        88 G~~~i~L~~l~~   99 (167)
T 2cjs_A           88 GTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEGGGSCB
T ss_pred             EEEEEEHHHhcc
Confidence            999999999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.65  E-value=8.5e-16  Score=141.59  Aligned_cols=89  Identities=33%  Similarity=0.611  Sum_probs=78.6

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~~~  251 (336)
                      .+.|.|+|++|++|+..+.. .+||||++++   +.+.++|+++++++||+|||+|.|.+...   ...|.|+|||++.+
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~   98 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   98 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence            47899999999999998876 8999999999   56788999999999999999999998642   35899999999999


Q ss_pred             CCCCeeEEEEEe-Cccc
Q 019768          252 SADDIMGEAEID-IQPL  267 (336)
Q Consensus       252 ~~dd~iG~~~i~-l~~l  267 (336)
                      ++|++||++.++ +.++
T Consensus        99 ~~~~~iG~~~i~~l~~~  115 (296)
T 1dqv_A           99 SRHDLIGQVVLDNLLEL  115 (296)
T ss_dssp             SCCCEEEEEECCCTTGG
T ss_pred             CCCceEEEEEecccccc
Confidence            999999999985 4444

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.62  E-value=4.7e-15  Score=146.62  Aligned_cols=87  Identities=25%  Similarity=0.394  Sum_probs=79.7

Q ss_pred             EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCCCC
Q 019768          178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSAD  254 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~~d  254 (336)
                      ..|.|+|+|++|++|+. |.. .+||||+|.+++++++|+++++++||+|||+|.|.+..  ....|.|+|||+|.+++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            37899999999999998 765 89999999999999999999999999999999998632  567899999999999999


Q ss_pred             CeeEEEEEeCc
Q 019768          255 DIMGEAEIDIQ  265 (336)
Q Consensus       255 d~iG~~~i~l~  265 (336)
                      |+||.+.++|.
T Consensus       471 D~LG~~~~~L~  481 (540)
T 3nsj_A          471 DLLGSCDRSPH  481 (540)
T ss_dssp             EEEEEEEECCC
T ss_pred             CEEEEEEEEee
Confidence            99999999986

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.61  E-value=1.1e-14  Score=117.97  Aligned_cols=85  Identities=12%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCee
Q 019768          182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM  257 (336)
Q Consensus       182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~i  257 (336)
                      |+|.|..|.+|+.    ++|||+++.+.+.+++|++++ ++.||+|||.|+|++..   ....|.|.|+|+++++++.+|
T Consensus        23 L~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlI   98 (144)
T 3l9b_A           23 LIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLI   98 (144)
T ss_dssp             EEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEE
T ss_pred             EEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEE
Confidence            8899999999995    569999999999999999998 69999999999999864   457899999999999999999


Q ss_pred             EEEEEeCcccccc
Q 019768          258 GEAEIDIQPLLTS  270 (336)
Q Consensus       258 G~~~i~l~~l~~~  270 (336)
                      |.+.++|.++...
T Consensus        99 G~~~i~Lq~lv~~  111 (144)
T 3l9b_A           99 GTFRMVLQKVVEE  111 (144)
T ss_dssp             EEEEEESHHHHHH
T ss_pred             EEEEEEhHHhccC
Confidence            9999999999754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=2.7e-15  Score=137.06  Aligned_cols=115  Identities=29%  Similarity=0.374  Sum_probs=88.6

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|++|+..+.. .+||||++++.  +   .+++|+++++++||+|||.|.|.+...   ...|.|+|||++
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  228 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  228 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence            46899999999999998876 89999999983  2   457999999999999999999998653   346999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++++++||++.+++..+..+..+-...-......+.+||+|..
T Consensus       229 ~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          229 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            99999999999999987532211100000012345678988654

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.53  E-value=4.4e-14  Score=142.40  Aligned_cols=92  Identities=26%  Similarity=0.421  Sum_probs=81.1

Q ss_pred             EEEEEEEEEEeeeecccCCC---CCCCcEEEEEECC-----eEEEeeeeCCC-CCceeeceeeecccCC-CCceEEEEEe
Q 019768          178 FIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSN-LNPVWNEELMLSVPQE-YGPVKLEVFD  247 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~~~---~~~dPyv~i~l~~-----~~~rT~~~~~t-~nP~W~e~f~f~v~~~-~~~L~v~V~d  247 (336)
                      ..+.|+|+|++|++|+..+.   ..+||||++.+.+     .+++|++++++ +||+|||+|.|.+..+ ...|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            45889999999999998873   3889999999933     67899999997 9999999999998753 3679999999


Q ss_pred             cCCCCCCCeeEEEEEeCccccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      +|.++++++||++.++|..+..
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCC
T ss_pred             cCCCCCCceeEEEEEEHHHcCC
Confidence            9999999999999999999853

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.52  E-value=1.1e-14  Score=148.39  Aligned_cols=103  Identities=19%  Similarity=0.389  Sum_probs=89.6

Q ss_pred             EEEEEEEEEEeeeeccc---CCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecC
Q 019768          178 FIGLLKVKVVKGINLAI---RDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHD  249 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~---~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~  249 (336)
                      ..|.|.|.|++|++|+.   .+.. .+||||+++++   ..+++|+++++++||+|||+|.|.+.. ....|.|+|||+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            47899999999999998   6654 88999999997   467899999999999999999999976 5678999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++ |++||++.|+|.++..            +...+.||+|..
T Consensus        96 ~~~-ddfIG~v~I~L~~L~~------------g~~~~~w~~L~~  126 (749)
T 1cjy_A           96 YVM-DETLGTATFTVSSMKV------------GEKKEVPFIFNQ  126 (749)
T ss_dssp             SSS-CEEEEEECCBSTTSCT------------TCCCCEEEEETT
T ss_pred             CCC-CceeEEEEEEHHHcCC------------CCceEEEEecCC
Confidence            998 9999999999998843            334568998755

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.51  E-value=2.9e-15  Score=147.09  Aligned_cols=103  Identities=15%  Similarity=0.215  Sum_probs=16.5

Q ss_pred             eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCC---CCceeeceeeecccCCCCceEEEEEec-C
Q 019768          175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSN---LNPVWNEELMLSVPQEYGPVKLEVFDH-D  249 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t---~nP~W~e~f~f~v~~~~~~L~v~V~d~-~  249 (336)
                      .-...|.|+|+|++|++|+.++    ||||++++++. ..||++++++   +||+|||+|.|.+.+....|.|+|||. +
T Consensus         6 ~~r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d   81 (483)
T 3bxj_A            6 SRRVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD   81 (483)
T ss_dssp             EEEEEECC-------------------------------------------------CCEECC-----------------
T ss_pred             cceeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence            4556789999999999999887    99999999775 5699999999   999999999999755457899999994 4


Q ss_pred             ---CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          250 ---TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ---~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                         .+++|++||.+.|++.++..            +...+.||+|.+
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~------------~~~~~~W~~L~~  116 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAG------------RHFTEQWYPVTL  116 (483)
T ss_dssp             -------------------------------------CCEECC----
T ss_pred             ccccCCCCceEEEEEEEHHHhcC------------CCCCCeEEECCC
Confidence               36789999999999999853            235678999854

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.49  E-value=8.9e-15  Score=134.72  Aligned_cols=115  Identities=26%  Similarity=0.396  Sum_probs=90.4

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .|.|.|.|++|++|+..+.. .+||||++++.  +   .+++|+++++++||+|||.|.|.+...   ...|.|+|||++
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  230 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD  230 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence            48899999999999998876 78999999995  2   568999999999999999999998753   347999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccC-CCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAF-GDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~-~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++++++||.+.|++..+....... ...--..+..+..|++|..
T Consensus       231 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~  275 (296)
T 1dqv_A          231 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE  275 (296)
T ss_dssp             SSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred             CCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence            9999999999999998764311100 0000113456778988765

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.33  E-value=1.8e-12  Score=132.31  Aligned_cols=107  Identities=32%  Similarity=0.464  Sum_probs=90.7

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~  250 (336)
                      .+.|.|.|++|++|...+.. .+||||++++     ...+++|+++++++||+|||.|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            47899999999999999887 8999999999     4467899999999999999999999865  34569999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE  298 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~  298 (336)
                      +++|++||.+.+++.++...             ..+.||++.......
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~-------------~~~~w~~Lls~~~g~  285 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKA-------------GVDGWFKLLSQEEGE  285 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHC-------------CEEEEEECBCTTGGG
T ss_pred             ccccccccccccchhhhccC-------------Ccccceeecccccce
Confidence            99999999999999988532             246788876654433

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.15  E-value=2e-10  Score=118.18  Aligned_cols=85  Identities=15%  Similarity=0.394  Sum_probs=71.7

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-------eEEEeeeeCC-CCCceeece-eeec-ccC-CCCceEEEEEe
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-------QTVQTTIVKS-NLNPVWNEE-LMLS-VPQ-EYGPVKLEVFD  247 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-------~~~rT~~~~~-t~nP~W~e~-f~f~-v~~-~~~~L~v~V~d  247 (336)
                      .+.|+|+|++|++|+..   ..||||++.+.+       .+++|+++++ ++||+|||+ |.|. +.. ....|.|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999864   579999999843       5789999986 699999998 9998 643 34578999999


Q ss_pred             cCCCCCCCeeEEEEEeCcccccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      ++    +++||++.+||..|..+
T Consensus       726 ~d----ddfiG~~~ipL~~L~~G  744 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPG  744 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCE
T ss_pred             cC----CCeeeEEEEEHHHcCCc
Confidence            75    78999999999998654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=120.67  Aligned_cols=85  Identities=21%  Similarity=0.419  Sum_probs=70.4

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC------eEEEeeeeCC-CCCceeec-eeeec-ccC-CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTTIVKS-NLNPVWNE-ELMLS-VPQ-EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~------~~~rT~~~~~-t~nP~W~e-~f~f~-v~~-~~~~L~v~V~d~  248 (336)
                      ...|+|+|++|++|+..   ..||||+|.+.+      .+++|+++.+ ++||+||| .|.|. +.. ....|.|+|||+
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            34799999999999864   579999999843      3579999986 69999999 69998 543 345799999998


Q ss_pred             CCCCCCCeeEEEEEeCcccccc
Q 019768          249 DTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       249 ~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      +    +++||++.+||..|..+
T Consensus       801 d----ddfiG~~~lpL~~L~~G  818 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSG  818 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCE
T ss_pred             C----ccEEeeEEEEHHHcCCC
Confidence            7    79999999999998644

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.12  E-value=1.3e-09  Score=85.71  Aligned_cols=114  Identities=11%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEE----Ee-eeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV----QT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS  252 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~----rT-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~  252 (336)
                      .+.|+|.+.++.--...... ..||||.+.++....    +| .+.++|..|+||+.|.-.+.+ ...|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            34577877665532222222 679999999966442    44 677779999999999999876 4789999997554  


Q ss_pred             CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768          253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM  332 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~  332 (336)
                        +|++.++|++.+|+...+..       +...                          ++|+.|+  +.|+|+++++|+
T Consensus        82 --~fvAn~tV~~edL~~~c~~~-------~g~~--------------------------e~WvdLe--P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKN-------NGKA--------------------------EFWLDLQ--PQAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTT-------TTEE--------------------------EEEEECB--SSCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccC-------CCce--------------------------EEEEecc--cCcEEEEEEEEe
Confidence              89999999999998542210       1122                          5556665  589999999986

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.11  E-value=2.3e-10  Score=118.05  Aligned_cols=84  Identities=25%  Similarity=0.454  Sum_probs=70.1

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECC------eEEEee-eeCC-CCCceeec-eeee-cccC-CCCceEEEEEe
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTT-IVKS-NLNPVWNE-ELML-SVPQ-EYGPVKLEVFD  247 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~------~~~rT~-~~~~-t~nP~W~e-~f~f-~v~~-~~~~L~v~V~d  247 (336)
                      .|.|+|.|++|++|+..   .+||||++.+.+      ++++|+ ++++ ++||+||| .|.| .+.. ....|.|.|||
T Consensus       677 ~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D  753 (799)
T 2zkm_X          677 ATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME  753 (799)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEE
T ss_pred             eeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEE
Confidence            57899999999999863   579999999922      367999 8875 69999999 6999 7754 33579999999


Q ss_pred             cCCCCCCCeeEEEEEeCccccc
Q 019768          248 HDTFSADDIMGEAEIDIQPLLT  269 (336)
Q Consensus       248 ~~~~~~dd~iG~~~i~l~~l~~  269 (336)
                      ++    +++||++.+||..|..
T Consensus       754 ~d----~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          754 EG----NKFLGHRIIPINALNS  771 (799)
T ss_dssp             TT----TEEEEEEEEEGGGBCC
T ss_pred             eC----CCccceEeeehhhcCC
Confidence            86    7999999999999854

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=87.23  Aligned_cols=88  Identities=13%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             EEEEEEEEEEeeeecccC--CCCCCCcEEEEEECCeE----EEe-eeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768          178 FIGLLKVKVVKGINLAIR--DMMSSDPYVVLRLGQQT----VQT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT  250 (336)
Q Consensus       178 ~~g~L~V~v~~a~~L~~~--~~~~~dPyv~i~l~~~~----~rT-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~  250 (336)
                      ..+.|+|.+.+..-.+..  .....||||.+.++...    -+| .+.++|..|+||+.|.-.+.+ ...|.|.||+...
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC
Confidence            345678888776543322  22368999999996643    366 666779999999999999876 4789999996443


Q ss_pred             CCCCCeeEEEEEeCcccccc
Q 019768          251 FSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~  270 (336)
                          +|++.+.|++.+|+..
T Consensus        87 ----~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           87 ----DLISETTVELYSLAER  102 (138)
T ss_dssp             ----SCCEEEEEESHHHHHH
T ss_pred             ----CeeeEEEEEHHHHHhh
Confidence                8999999999999854

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=91.14  E-value=2.1  Score=36.76  Aligned_cols=55  Identities=13%  Similarity=0.270  Sum_probs=42.1

Q ss_pred             EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC----CCCCeeEEEEEeCcc
Q 019768          212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF----SADDIMGEAEIDIQP  266 (336)
Q Consensus       212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~----~~dd~iG~~~i~l~~  266 (336)
                      .++|.|...+.+|.|+|++.+.++.   ....|.|++++...-    ..+..+|.+.+||-.
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            4688888889999999999999876   446788998875421    123578999999853

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=85.09  E-value=4.1  Score=42.61  Aligned_cols=87  Identities=15%  Similarity=0.242  Sum_probs=58.9

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~  248 (336)
                      ...+.|.|..+.++...+  ..+-||.+.+  |++.    ..|..+.-..+|.|||.+.|++.-    ....|.|+||+.
T Consensus       216 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            456889999998886543  3467877665  5542    455555557789999999887632    456799999996


Q ss_pred             CCC--C----------CCCeeEEEEEeCccc
Q 019768          249 DTF--S----------ADDIMGEAEIDIQPL  267 (336)
Q Consensus       249 ~~~--~----------~dd~iG~~~i~l~~l  267 (336)
                      ..-  +          .+..||.+.++|-+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             C----------------CEEEEEEEEESBCT
T ss_pred             cCCccCccccccccccccceEEEEeeeEECC
Confidence            321  1          235899999998764

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=81.98  E-value=0.57  Score=29.79  Aligned_cols=39  Identities=31%  Similarity=0.800  Sum_probs=30.9

Q ss_pred             CCCCCCcCCCCC-CCCeEEeeeceEEcccchhhhccCCCc
Q 019768           30 RDNRICADCGAP-DPKWASANIGVFICLKCCGVHRSLGTH   68 (336)
Q Consensus        30 ~~N~~C~dC~~~-~p~w~s~~~g~f~C~~C~~~hr~lg~~   68 (336)
                      .+...|++|++. -|.|=.-.-|..+|-.|.-.++..|.+
T Consensus         2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence            356899999985 678998888999999997766665543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=80.96  E-value=4.9  Score=42.55  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEE--CCe----EEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQ----TVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~----~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~  248 (336)
                      ...+.|+|+.+.++........+-||.+.+  |++    ...|+.+. ..+|.|||.+.|++.-    ....|.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            456899999988776433224577888777  443    34444333 4578899998888632    456799999986


Q ss_pred             CCC----CCCCeeEEEEEeCccc
Q 019768          249 DTF----SADDIMGEAEIDIQPL  267 (336)
Q Consensus       249 ~~~----~~dd~iG~~~i~l~~l  267 (336)
                      ...    ..+..||.+.++|-+.
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCT
T ss_pred             cCccCcccccceeEEeeeeeEcc
Confidence            542    1245899999999765

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=80.81  E-value=9.7  Score=30.73  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             EEEEEEEEeeeecccCCC--CCCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC--------CCCceEEEEE
Q 019768          180 GLLKVKVVKGINLAIRDM--MSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVF  246 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~V~  246 (336)
                      +.+.|.|.++.--+..-.  ...+|..-+.+   +-+.+.|.++. +.+|.+|.+-.|.+..        ....+.|+++
T Consensus        18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh   96 (156)
T 2yrb_A           18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH   96 (156)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence            556777777652111000  12366555554   34555666655 8999999888777743        1247889998


Q ss_pred             ecCCCCCCCeeEEEEEeCcccccc
Q 019768          247 DHDTFSADDIMGEAEIDIQPLLTS  270 (336)
Q Consensus       247 d~~~~~~dd~iG~~~i~l~~l~~~  270 (336)
                      .... +..+.||.+.|+|.++++.
T Consensus        97 qa~g-~~~~tla~~~I~l~~lLe~  119 (156)
T 2yrb_A           97 QAYS-TEYETIAACQLKFHEILEK  119 (156)
T ss_dssp             EECS-SCEEEEEEEEECCSHHHHC
T ss_pred             EeeC-CCceEEEEEEEEhHHhhCc
Confidence            7643 3456999999999999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	6e-44
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-18
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-18
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	5e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-14
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-14
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	4e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-14
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-12
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-12
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-12
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-12
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	6e-12
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-07
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-04

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  145 bits (366), Expect = 6e-44
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 20  KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD 79
           K  + ++     N +C DCGAPDP W S N+G+  C++C G+HR LG H S++ S+TLD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 80  WSDDEVDAMIEVGGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 137
               E+     + GN+  N I E  +P E   KP P S    R  +I +KY  + + + 
Sbjct: 63  LGTSELLLAKNI-GNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK 120

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.0 bits (194), Expect = 1e-18
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 179 IGLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ 236
            G L+V +V    L   D ++  DPYV L    Q  ++ + +     P WNE  + +V +
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 237 EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
               +K ++FD D  + DD +GEA I ++P+   
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE 102

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (191), Expect = 2e-18
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
           + LL V V K      ++    + YV L++      TTI      P W ++ M  + +  
Sbjct: 1   MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVK-STTIAVRGSQPSWEQDFMFEINRLD 57

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298
             + +EV++      D ++G   I ++ +  S               G+WL  D  A++ 
Sbjct: 58  LGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQS----------NEEGPGEWLTLDSQAIMA 106

Query: 299 DSTI 302
           DS I
Sbjct: 107 DSEI 110

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 3e-15
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 176 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSV 234
           V+ +G+L+VKV+K  +L   D    SDP+ +L LG   +QT  V  NLNP WN+     +
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 235 PQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 267
              +  +++ VFD D     D +G+  I +  +
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 94

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (168), Expect = 5e-15
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 233
            +L V V    NL   D    SDPYV L+L      +   +T  +K +LNP WNE     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 234 VPQEYGPVKL--EVFDHDTFSADDIMGEAEIDIQPLLTSAL 272
           + +     +L  E++D D  S +D MG     I  L  + +
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 115

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 180 GLLKVKVVKGINLAIRDM-MSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS 233
             L V ++   +L  R+     +PYV +        +   +T  VK  L P WN+  + S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 234 VPQEYG----PVKLEVFDHDTFS--ADDIMGEAEIDIQPLLTS 270
                      +++ ++D         + +GE  I+++  L  
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 180 GLLKVKVVKGINLAIRDMMSS-DPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLS 233
             L V V+K  +L   D+    DPYV + L          +T + K   N V+NE  +  
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 234 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 265
           +P E      V+  V D +  S ++++G   +   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 4e-14
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 30/157 (19%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEY 238
             L++ V+       +       PYV + +  Q+ +T    +  +P W + L + V    
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65

Query: 239 GPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298
             +   V+ H T  +D ++G A +DI   L S                      +N  LE
Sbjct: 66  -KLHFRVWSHQTLKSDVLLGTAALDIYETLKS----------------------NNMKLE 102

Query: 299 DSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335
           +  + +  G  K+           G+L + L+ + L+
Sbjct: 103 EVVVTLQLGGDKEP------TETIGDLSICLDGLQLE 133

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 180 GLLKVKVVKGINLAIRDM-MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS 233
           G L V +++ ++LA  D    SDP+V L L      +   +T I K  LNP +NEE    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 234 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKW-- 288
           +         + + V+D+D   ++D +G  ++ I         + +     + +I +W  
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQ 134

Query: 289 LKS 291
           L++
Sbjct: 135 LQN 137

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 7e-14
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 180 GLLKVKVVKGINLAIRDM-MSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVP 235
             L V +++   L   DM  +SDPYV + L    ++  +T + +  LNPV+NE+    VP
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 236 QEYGP---VKLEVFDHDTFSADDIMGEAEIDIQPL 267
                   + + V+D D FS  DI+GE ++ +  +
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 175 MVEFIGLLKVKVVKGINLAIRDMM------------SSDPYVVLRLGQQTV-QTTIVKSN 221
           MV F GLLK+K+ + ++L                    DPY+ L +    + QT   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 222 LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
            +P W++E +  V      ++L VF       DD +    I  + LL +
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQN 108

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)

Query: 167 SSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMS--SDPYVVLRL---GQQTVQ 214
           SS    +G + F            V + +   L   D  S  SDPY+ + +    +  V+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 215 TTIVKSNLNPVWNEEL-MLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPL 267
           T +++  L+P ++E      +P        +   +   D FS DDI+GE  I +  +
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS 233
           G L V +++  NL   D+   SDPYV + L Q     +  +TTI K+ LNP +NE     
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 234 VPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 290
           VP E      V + V D+D    +D +G+  +           + D        I +W  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 182 LKVKVVKGINLAIRDMMS---SDPYVV-----LRLGQQTVQTTIVK-SNLNPVWNEELML 232
           L+V+++ G  L   +       DP V+     +     + QT ++  +  NP W+ E   
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 233 SVPQEYG-PVKLEVFDHDTFSADDIMGEAEIDIQ 265
            V       V+  V D+D+ S +D +G++ I   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN 99

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 47/160 (29%)

Query: 182 LKVKVVKGINLAIRDMM----SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSV 234
             V V++   +          + DPYV L +        +T    +++NPVWNE     +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 235 PQEYG-PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293
                  +++ + D +    D+ +G A   +  +                          
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVG----------------------- 100

Query: 294 NALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333
                           K+++      V    LE+ LE   
Sbjct: 101 ---------------EKKEVPFIFNQVTEMVLEMSLEVAS 125

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 168 SQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMSS-DPYVVLRLG-----QQTVQ 214
           S+K D+G + F        GLL V ++K  NL   D+    DPYV   L       +  +
Sbjct: 1   SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRK 60

Query: 215 TTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTFSADDIMGEAEIDIQ 265
           T+I K+ LNP +NE L+  V  E      + + V D+D    ++++G   +  +
Sbjct: 61  TSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 114

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 180 GLLKVKVVKGINLAIRDMMS-SDPYVVLRL--------------GQQTVQTTIVKSNLNP 224
           G L + +++  NL  RD    SDP+V + L               +   +T  V+ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 225 VWNEELMLSVPQEYGP----VKLEVFDHDTFSADDIMGEAEIDIQPL 267
            WN+ ++             +++ V+D+D FS++D +GE  ID+   
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 180 GLLKVKVVKGINLAIRDMM-SSDPYVV---LRLGQQTVQTTIVKSNLNPVWNEELMLSVP 235
             L V++++ ++L  +D    SDPYV    L   ++  QT + +  LNP++NE    SVP
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 236 QE---YGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270
                   +   V+D D FS  D++G+  +D    L  
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 115

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 164 STNSSQKKDVGMVEF-------IGLLKVKVVKGINLAIRDMMSSDPYVVLRL----GQQT 212
           S +S        + +          L V  ++ +          D YV   +    G   
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSVE 60

Query: 213 VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF---DHDTFSADDIMGEAEIDIQPL 267
            QT + K  L+  W E L+L + +E  P           D FS   + GE  + +   
Sbjct: 61  AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 182 LKVKVVKGINLAIRDMMSSDPYVVLRL-------GQQTVQTTIVKSN-LNPVWNEELMLS 233
           L + V+ G  L+ R       YV + L        ++        +N +NPVW EE  + 
Sbjct: 3   LSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 234 VPQEYGP---VKLEVFDHDTFSADDIMGEAEIDI 264
                     +++ V +      +  +G   I I
Sbjct: 60  EKILMPELASLRVAVMEEG----NKFLGHRIIPI 89

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 6/75 (8%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 199 SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-DTFS 252
           +S P+  +++       +       K  + P W       + +    +++ +    +   
Sbjct: 23  ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR-VIQIVLMRAAEDPM 81

Query: 253 ADDIMGEAEIDIQPL 267
           ++  +G + +  +  
Sbjct: 82  SEVTVGVSVLAERCK 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.88
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.83
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.81
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.79
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.76
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.71
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.68
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.67
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.66
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.64
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.64
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.6
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.33
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	92.83
d1u5ka2	157	Recombinational repair protein RecO, C-terminal do	90.19

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-44  Score=284.82  Aligned_cols=118  Identities=36%  Similarity=0.697  Sum_probs=111.3

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768           19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN   98 (336)
Q Consensus        19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n   98 (336)
                      .++.|++|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+|||+|||++||.|++++|+.|+. +||..+|
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~-~GN~~~n   80 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAGFN   80 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHH-HhHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999999976 6999999


Q ss_pred             hhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCC
Q 019768           99 AIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKP  137 (336)
Q Consensus        99 ~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~  137 (336)
                      ++||+++|.. ..+|.++++...|++||++||++++|+..
T Consensus        81 ~~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          81 EIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK  120 (122)
T ss_dssp             HHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCccccc
Confidence            9999999864 56889999999999999999999999854

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4e-23  Score=165.02  Aligned_cols=122  Identities=28%  Similarity=0.481  Sum_probs=104.1

Q ss_pred             EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCC
Q 019768          177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADD  255 (336)
Q Consensus       177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd  255 (336)
                      +.+|.|+|+|++|++|+..+.. .+||||++++++++++|++++++.||.|||.|.|.+......|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            3579999999999999998876 899999999999999999999999999999999999876788999999999999999


Q ss_pred             eeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                      +||++.++|.++..+              ...||.|...                     .++...+|+|+|+|+++.
T Consensus        83 ~lG~~~i~l~~l~~~--------------~~~~~~l~~~---------------------~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDG--------------QPNCYVLKNK---------------------DLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSS--------------CCEECCCBCS---------------------CTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCC--------------CceEEEcccc---------------------CCCCceeEEEEEEEEEEE
Confidence            999999999988432              1358765331                     124456799999999874

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.7e-22  Score=163.44  Aligned_cols=127  Identities=26%  Similarity=0.420  Sum_probs=106.2

Q ss_pred             ceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccCCCCceEEEEEecCCC
Q 019768          174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQEYGPVKLEVFDHDTF  251 (336)
Q Consensus       174 g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~  251 (336)
                      |...+.|.|+|+|++|++|+..+.. .+||||+++++.+.++|+++++ +.||+|||+|.|.+......|.|+|||++.+
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            4456789999999999999998876 8999999999999999999874 8999999999999987667799999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      ++|++||.+.|+|.++...           +.....||++                        .......|+|+|+++|
T Consensus        84 ~~d~~iG~~~i~L~~l~~~-----------~~~~~~~~~l------------------------~~~~~~~G~i~l~l~~  128 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVE-----------GSIPPTAYNV------------------------VKDEEYKGEIWVALSF  128 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHH-----------SEEEEEEEEE------------------------EETTEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEhHHhccc-----------CCcCcEEEEe------------------------cCCCccCEEEEEEEEE
Confidence            9999999999999987532           2333457652                        1234457999999999


Q ss_pred             EeCC
Q 019768          332 MPLD  335 (336)
Q Consensus       332 ~~~~  335 (336)
                      .|..
T Consensus       129 ~p~~  132 (136)
T d1wfja_         129 KPSG  132 (136)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9854

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.83  E-value=2.4e-20  Score=150.70  Aligned_cols=121  Identities=25%  Similarity=0.497  Sum_probs=99.6

Q ss_pred             eeEEEEEEEEEEEeeeecccCC------------CCCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCce
Q 019768          175 MVEFIGLLKVKVVKGINLAIRD------------MMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPV  241 (336)
Q Consensus       175 ~~~~~g~L~V~v~~a~~L~~~~------------~~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L  241 (336)
                      |+-+.|.|.|+|++|++|++.+            ...+||||+++++++. .+|+++.++.||.|||.|.|.+.+. ..|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-Cce
Confidence            4458999999999999998743            1268999999999866 5899999999999999999999753 679


Q ss_pred             EEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccc
Q 019768          242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVE  321 (336)
Q Consensus       242 ~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~  321 (336)
                      .|+|||++.+++|++||.+.|+|.++....          ....+.||+                          |+  +
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~----------~~~~~~w~~--------------------------L~--p  121 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNG----------SRHFEDWID--------------------------LE--P  121 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTT----------CSEEEEEEE--------------------------CB--S
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcC----------CcceeEEEe--------------------------CC--C
Confidence            999999999999999999999999986432          233556765                          33  4


Q ss_pred             cceEEEEEEEEeC
Q 019768          322 SGELELELEWMPL  334 (336)
Q Consensus       322 ~G~i~l~l~~~~~  334 (336)
                      .|+|+|++++.|-
T Consensus       122 ~G~v~l~v~~~~~  134 (136)
T d1gmia_         122 EGKVYVIIDLSGS  134 (136)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEeC
Confidence            7999999988764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.1e-20  Score=146.09  Aligned_cols=116  Identities=20%  Similarity=0.339  Sum_probs=95.0

Q ss_pred             EEEEEEEEEeeeecccCCC----CCCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDM----MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~----~~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~  250 (336)
                      .+.|+|+|++|+||+....    +.+||||++.++.   ++++|+++.++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            4689999999999987532    2789999999965   67899999999999999999999876 44579999999987


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEE
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE  330 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~  330 (336)
                      . +|++||++.++|.++..            +...+.||+                          |.....|+|+++++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~------------~~~~~~~~~--------------------------L~~~~~g~i~~~l~  122 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKV------------GEKKEVPFI--------------------------FNQVTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCT------------TCEEEEEEE--------------------------ETTTEEEEEEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccC------------CCeEEEEEE--------------------------ccCCCeEEEEEEEE
Confidence            5 68999999999998842            233455665                          55566789999998


Q ss_pred             EEe
Q 019768          331 WMP  333 (336)
Q Consensus       331 ~~~  333 (336)
                      ++|
T Consensus       123 ~~~  125 (126)
T d1rlwa_         123 VAS  125 (126)
T ss_dssp             CCC
T ss_pred             EEe
Confidence            875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-19  Score=144.12  Aligned_cols=90  Identities=23%  Similarity=0.419  Sum_probs=81.5

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      +.|.|+|++|++++..+.. .+||||++.++++.++|++++++.||.|||.|.|.+.+ ...|.|+|||++.+++|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEE
Confidence            7799999999999987776 89999999999999999999999999999999999875 468999999999999999999


Q ss_pred             EEEEeCcccccc
Q 019768          259 EAEIDIQPLLTS  270 (336)
Q Consensus       259 ~~~i~l~~l~~~  270 (336)
                      ++.++|.++...
T Consensus        85 ~~~i~L~~l~~~   96 (133)
T d2nq3a1          85 TAALDIYETLKS   96 (133)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEEEHHHhhhh
Confidence            999999998643

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.6e-19  Score=144.90  Aligned_cols=103  Identities=31%  Similarity=0.481  Sum_probs=88.5

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT  250 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~  250 (336)
                      .+.|.|.|++|+||+..+.. .+||||++++     +..+++|++++++.||+|||.|.|.+..  ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            36799999999999998887 8899999998     4567899999999999999999999865  23569999999999


Q ss_pred             CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCc
Q 019768          251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN  294 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~  294 (336)
                      +++|++||.+.|+|.++..             ..++.||+|.++
T Consensus        94 ~~~d~~iG~~~i~l~~l~~-------------~~~~~W~~L~~~  124 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQK-------------AGVDGWFKLLSQ  124 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTT-------------CCEEEEEECBCH
T ss_pred             CCCCcEeEEEEEeHHHcCC-------------CCCCeEEECCCC
Confidence            9999999999999998742             125689987553

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.3e-18  Score=137.24  Aligned_cols=127  Identities=20%  Similarity=0.366  Sum_probs=96.0

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG  258 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG  258 (336)
                      ++.|.|+|.+|++|...+  ..||||++.+++.+.+|.+++ +.||.|||.|.|.+......|.|+|||++.+ .|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            368999999999999987  469999999999999999886 5699999999999988778899999999886 689999


Q ss_pred             EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768          259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW  331 (336)
Q Consensus       259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~  331 (336)
                      .+.|+|.++..+.          ....+.||+|..+...       .+|++.+     -.......|.+++.|
T Consensus        77 ~~~I~L~~l~~~~----------~~~~~~W~~L~~~~~~-------~~gei~g-----t~~~~~~~~ll~~~~  127 (128)
T d2cjta1          77 TVWIPLRTIRQSN----------EEGPGEWLTLDSQAIM-------ADSEICG-----TKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEEGGGSCBCS----------SCCCCEEEECBC-----------------C-----CSCCCCCEEEEEEEE
T ss_pred             EEEEEehhhccCC----------CCCCCeeEECCccccC-------CCCEEEe-----eecCCCcEEEEEEEc
Confidence            9999999986432          2345679997553321       2344422     122345678888776

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3e-18  Score=139.27  Aligned_cols=101  Identities=30%  Similarity=0.514  Sum_probs=87.3

Q ss_pred             EEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCC
Q 019768          180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFS  252 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~  252 (336)
                      +.|.|.|++|+||+..+.. .+||||++++   +.+.++|++++++.||.|||.|.|.+..   ....|.|+|||++.++
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            6799999999999988876 8899999998   5567899999999999999999999864   3567999999999999


Q ss_pred             CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768          253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD  292 (336)
Q Consensus       253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~  292 (336)
                      ++++||.+.|+|.++..            +.....||+|.
T Consensus       114 ~~~~iG~~~i~L~~~~~------------~~~~~~W~~L~  141 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDF------------GHVTEEWRDLQ  141 (143)
T ss_dssp             CCEEEEEEEEEGGGCCC------------SSCEEEEEECB
T ss_pred             CCcEEEEEEEEchhccC------------CCCCccEEeCC
Confidence            99999999999999732            33456899864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.4e-17  Score=133.32  Aligned_cols=89  Identities=26%  Similarity=0.462  Sum_probs=75.3

Q ss_pred             EEEEEEEEeeeecccCCC--C-CCCcEEEEEE-----CCeEEEeeeeCC-CCCceeeceeeecccC-CCCceEEEEEecC
Q 019768          180 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRL-----GQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHD  249 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~--~-~~dPyv~i~l-----~~~~~rT~~~~~-t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~  249 (336)
                      ..|+|.|++|++|+..+.  . .+||||++++     +..+++|+++++ ++||.|||+|.|.+.. ....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            369999999999975443  3 7899999998     457889998876 5799999999998765 4456999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .+++|++||++.|+|.++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~  102 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLK  102 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBC
T ss_pred             CCCCCcEEEEEEEEEeccC
Confidence            9999999999999999885

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=5.6e-19  Score=143.33  Aligned_cols=103  Identities=28%  Similarity=0.476  Sum_probs=86.0

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC--------------eEEEeeeeCCCCCceeeceeeecccC----CCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ--------------QTVQTTIVKSNLNPVWNEELMLSVPQ----EYG  239 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~--------------~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~  239 (336)
                      .|.|.|.|++|+||+..+.. .+||||++++..              .+++|++++++.||.|||.|.|.+..    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            47899999999999998876 899999999832              12478899999999999999998533    356


Q ss_pred             ceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       240 ~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .|.|+|||++.+++|++||++.|+|.++..+            ....+||+|.+
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~------------~~~~~W~~L~~  138 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL------------DNTPRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGG------------TTCCEEEECBC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCC------------CCceEEEECcC
Confidence            7999999999999999999999999988532            23568998765

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.4e-17  Score=133.05  Aligned_cols=89  Identities=31%  Similarity=0.558  Sum_probs=78.5

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .+.|.|.|++|++|+..+.. .+||||++++   +.++++|++++++.||+|||+|.|.+..   ....|.|+|||++.+
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~   96 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF   96 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred             CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCC
Confidence            57899999999999988876 8899999998   4467899999999999999999999865   346799999999999


Q ss_pred             CCCCeeEEEEEeCccc
Q 019768          252 SADDIMGEAEIDIQPL  267 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l  267 (336)
                      ++|++||++.|++...
T Consensus        97 ~~d~~iG~~~i~~~~~  112 (130)
T d1dqva1          97 SRHDLIGQVVLDNLLE  112 (130)
T ss_dssp             SCCCEEEEEECCCTTG
T ss_pred             CCCceEEEEEECchhh
Confidence            9999999999986543

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.6e-17  Score=132.49  Aligned_cols=90  Identities=30%  Similarity=0.450  Sum_probs=78.4

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .|.|.|.|++|+||+..+.. .+||||++++     ...+++|++++++.+|.|||.|.|.+..   ....|.|.|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            47899999999999988776 8899999998     2346799999999999999999999865   2456999999999


Q ss_pred             CCCCCCeeEEEEEeCcccc
Q 019768          250 TFSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~  268 (336)
                      .++++++||++.+++..+.
T Consensus        94 ~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             SSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCEEEEEEeCccccC
Confidence            9999999999999997653

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.7e-17  Score=131.93  Aligned_cols=89  Identities=28%  Similarity=0.404  Sum_probs=73.1

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CC---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|+||+..+.. .+||||++++  +.   .+++|++++++.||.|||+|.|.++.   ....|.|+|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            46799999999999998876 8899999998  33   34589999999999999999999865   2345899999999


Q ss_pred             CCCCCCeeEEEEEeCccc
Q 019768          250 TFSADDIMGEAEIDIQPL  267 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l  267 (336)
                      .++++++||++.|++...
T Consensus        94 ~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCEEEEEEEcchhC
Confidence            999999999999998764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=6.3e-17  Score=133.47  Aligned_cols=115  Identities=29%  Similarity=0.374  Sum_probs=87.4

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~  249 (336)
                      .+.|.|.|++|+||+..+.. .+||||++++.  +   ..++|++++++.||+|||+|.|.++..   ...|.|+|||++
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            47899999999999988776 89999999983  2   245899999999999999999998652   356999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++++++||++.|++...-.+..+-...-......+.+||+|..
T Consensus       104 ~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999999999976432211000000012344678988755

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=126.08  Aligned_cols=90  Identities=23%  Similarity=0.440  Sum_probs=72.8

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEec
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDH  248 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~  248 (336)
                      .+.|.|+|++|+||+..+.. .+||||++++     ...+++|++++++.+|.|||.|.|. +..   ....|.|+|||+
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~   92 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   92 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEEC
Confidence            36799999999999988776 8899999998     3356899999999999999999997 433   234699999999


Q ss_pred             CCCC--CCCeeEEEEEeCcccc
Q 019768          249 DTFS--ADDIMGEAEIDIQPLL  268 (336)
Q Consensus       249 ~~~~--~dd~iG~~~i~l~~l~  268 (336)
                      +.+.  ++++||++.|+|.++.
T Consensus        93 ~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          93 ARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             -------CEEEEEEEEEGGGCC
T ss_pred             CCCCCCCCeeEEEEEEEchhcC
Confidence            9764  4569999999999875

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.4e-16  Score=124.99  Aligned_cols=89  Identities=25%  Similarity=0.503  Sum_probs=77.7

Q ss_pred             EEEEEEEEeeeecccCCCC--CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecCC
Q 019768          180 GLLKVKVVKGINLAIRDMM--SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHDT  250 (336)
Q Consensus       180 g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~~  250 (336)
                      +.|.|+|++|+||+..+..  .+||||++.+   +..+++|++++++.||.|||.|.|. +..   ....|.|+|||++.
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC
Confidence            6799999999999987765  5799999999   5567899999999999999999996 443   23469999999999


Q ss_pred             CCCCCeeEEEEEeCcccc
Q 019768          251 FSADDIMGEAEIDIQPLL  268 (336)
Q Consensus       251 ~~~dd~iG~~~i~l~~l~  268 (336)
                      +++|++||++.|+|.++.
T Consensus       102 ~~~~~~iG~~~i~L~~~~  119 (138)
T d1ugka_         102 FSRDDIIGEVLIPLSGIE  119 (138)
T ss_dssp             SCCCCCCEEEEEECTTCC
T ss_pred             CCCCcEEEEEEEEccccc
Confidence            999999999999999874

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.7e-16  Score=125.35  Aligned_cols=101  Identities=20%  Similarity=0.319  Sum_probs=83.2

Q ss_pred             EEEEEEEEEeeeecccCCCCCCCcEEEEEEC----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768          179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF  251 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~  251 (336)
                      .+.|.|.|++|++|....  .+||||++.+.    ...++|++++++.||+|||.|.|.+..   ....|.|+|||++.+
T Consensus        25 ~~~L~V~v~~a~~L~~~g--~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          25 KAELFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TTEEEEEEEEEECCCCSS--CCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEcCCCCCCC--CcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeeccc
Confidence            478999999999996533  67999999992    235789999999999999999999865   346799999999999


Q ss_pred             CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768          252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~  293 (336)
                      +++++||++.|+|.++..            ....+.||+|..
T Consensus       103 ~~~~~iG~~~i~L~~l~~------------~~~~~~W~~L~~  132 (138)
T d1wfma_         103 SRHSVAGELRLGLDGTSV------------PLGAAQWGELKT  132 (138)
T ss_dssp             CTTSCSEEEEEESSSSSS------------CTTCCEEEECCC
T ss_pred             ccceeeeEEEEEhHHccC------------CCCceEeEeCCC
Confidence            999999999999998732            233567988644

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.4e-15  Score=118.70  Aligned_cols=95  Identities=15%  Similarity=0.322  Sum_probs=74.9

Q ss_pred             CCCcEEEEEECCe-----EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCccccccccc
Q 019768          199 SSDPYVVLRLGQQ-----TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALA  273 (336)
Q Consensus       199 ~~dPyv~i~l~~~-----~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~  273 (336)
                      .+||||++++++.     ..+|+++++|+||+|||+|.|.+.+ ...|.|.|||+|    ++++|.+.+.+..+......
T Consensus        23 ~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~   97 (123)
T d1bdya_          23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----EDPMSEVTVGVSVLAERCKK   97 (123)
T ss_dssp             SCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TEEEEEEEEEHHHHHHHHHT
T ss_pred             CCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----ccccCccEEehhheeecccc
Confidence            7899999999442     3578899999999999999999976 467999999976    68999999999988653211


Q ss_pred             CCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768          274 FGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP  333 (336)
Q Consensus       274 ~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~  333 (336)
                             .+...+.|+                          .|+  +.|+|+|+++|+.
T Consensus        98 -------~~~~~~~W~--------------------------~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          98 -------NNGKAEFWL--------------------------DLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             -------TTTEEEEEE--------------------------ECB--SSCEEEEEEEEEE
T ss_pred             -------CCCcccEEE--------------------------eCC--CCEEEEEEEEEec
Confidence                   223344554                          454  6899999999985

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.8e-16  Score=128.87  Aligned_cols=115  Identities=26%  Similarity=0.399  Sum_probs=88.2

Q ss_pred             EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768          179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD  249 (336)
Q Consensus       179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~  249 (336)
                      .|.|.|.|++|+||+..+.. .+||||++++..     .+++|++++++.||.|||.|.|.+..   ....|.|.|||++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~   98 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD   98 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence            48899999999999988776 789999999843     25789999999999999999998864   3457999999999


Q ss_pred             CCCCCCeeEEEEEeCcccccccccC-CCCCccCceeeceeeecCC
Q 019768          250 TFSADDIMGEAEIDIQPLLTSALAF-GDPEMFGNMQIGKWLKSDD  293 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~-~~~~~~~~~~~~~wf~l~~  293 (336)
                      .++++++||++.|++..+....... ...-......+.+|++|.+
T Consensus        99 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~  143 (145)
T d1dqva2          99 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE  143 (145)
T ss_dssp             SSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred             CCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCC
Confidence            9999999999999998764322110 0001123345567877543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=100.75  Aligned_cols=84  Identities=26%  Similarity=0.539  Sum_probs=63.8

Q ss_pred             EEEEEEEeeeecccCCCCCCCcEEEEEE-C-----CeEEEeeee--CCCCCceeece-eee-cccC-CCCceEEEEEecC
Q 019768          181 LLKVKVVKGINLAIRDMMSSDPYVVLRL-G-----QQTVQTTIV--KSNLNPVWNEE-LML-SVPQ-EYGPVKLEVFDHD  249 (336)
Q Consensus       181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l-~-----~~~~rT~~~--~~t~nP~W~e~-f~f-~v~~-~~~~L~v~V~d~~  249 (336)
                      +|+|+|++|++|+...   .||||++++ |     ..+.+|+++  .+++||.|||. |.| .+.. ....|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~~---~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSSC---CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCCC---CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            6899999999998664   599999998 2     234555543  56899999976 433 3333 3357999999975


Q ss_pred             CCCCCCeeEEEEEeCccccccc
Q 019768          250 TFSADDIMGEAEIDIQPLLTSA  271 (336)
Q Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~  271 (336)
                          |++||++.+||+.+..+.
T Consensus        79 ----~~~lG~~~ipl~~l~~Gy   96 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGY   96 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEE
T ss_pred             ----CCEEEEEEEEcccCcCCc
Confidence                789999999999986553

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.19  E-value=0.052  Score=42.31  Aligned_cols=32  Identities=38%  Similarity=0.819  Sum_probs=29.1

Q ss_pred             CCCCCCCcCCCCCCCCeEEeeeceEEcccchh
Q 019768           29 QRDNRICADCGAPDPKWASANIGVFICLKCCG   60 (336)
Q Consensus        29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~   60 (336)
                      .|.-..|+.||.+.+.|.+..-|.|+|..|.+
T Consensus        67 ~P~l~~C~~cg~~~~~~f~~~~Gg~~C~~c~~   98 (157)
T d1u5ka2          67 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAA   98 (157)
T ss_dssp             CCCCSBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred             CCChhhHhcCCCCCCCcccccCCeeECCCCCC
Confidence            47788999999999999999999999999953