Citrus Sinensis ID: 019777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKVVRQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccccHHHHHccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEcHHHHHHHHHcccccccccccccccEEccEEEEEEEEEcccccccccEEEEEEccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEcccccccccccEEccccccccHHHHHHHcccccHHcccccccccccHHHccccccccEEEcccccccccccccccccccccccEEEEcccccEEEHHHccccccccHcHHHHHHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHccccccccccccEEEcccEEEEEEEcccccccccEEEEEcccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHcc
Coil and Loop (DISEMBL)
meafwhpecfrchscnlpitdvefsmsgnrpyhkhcykeqhhpkcdvcqnfiptnsaglieyrahpfwlqkycpsherdgtprccscermeprdtkylsldDGRKLCLECLDsaimdthecqPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAmegeknghhhlpetrglclseeqTVTTVlrrprigagyRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRlkgypnlrpdvEEGICQVLAHMWLESeiysgsgsdvassssssasssssspsssstsskkgkrsdFEKDLGKFFKHqiesdtssaygdglgkvvrq
Flexible Loop (DISEMBL)
meafwhpecfrchscnLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCScermeprdtkylsldDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTvlrrprigagyrliDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSsssasssssspsssstsskkgkrsdFEKDLGKFFkhqiesdtssaygdglgkvvrq
Low Complexity Region (SEG)
MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIYsgsgsdvassssssasssssspsssstssKKGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKVVRQ
Disordered region (IsUnstruct)
***FWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQAL****************TRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIY*******************************************************************
Disordered Region (DISOPRED)
MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGL*M**EQQVPLLLVE******************PETRGLCLSEEQTV****************************CEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESE***************************************EKDLGKFFKHQIESDTSSAYGDGLGKV***
Disordered Region (DISEMBL)
MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIY************************************FEKDLGKFFKHQIESDTSSAYGDGLGKVVRQ
Disordered Region (DISPRO)
**AFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIY**********************************SDFEKDLGKFFKHQIESDTSSAYGDGLGKVVR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKVVRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q8W4F0	553	Protein DA1-related 1 OS=	yes	no	0.955	0.580	0.848	1e-162
P0C7Q8	532	Protein DA1 OS=Arabidopsi	no	no	0.946	0.597	0.703	1e-137
Q0WSN2	528	Protein DA1-related 2 OS=	no	no	0.964	0.613	0.660	1e-126
Q9FJX9	560	Protein DA1-related 7 OS=	no	no	0.934	0.560	0.553	4e-95
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.958	0.199	0.549	1e-92
Q9FJX8	644	Protein DA1-related 6 OS=	no	no	0.946	0.493	0.529	7e-92
Q84WJ0	702	Protein DA1-related 5 OS=	no	no	0.937	0.448	0.511	2e-85
Q9LVR6	450	Protein DA1-related 3 OS=	no	no	0.967	0.722	0.510	3e-84
P53776	390	LIM/homeobox protein Lhx4	yes	no	0.303	0.261	0.254	0.0003
Q969G2	390	LIM/homeobox protein Lhx4	yes	no	0.303	0.261	0.254	0.0003

>sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/331 (84%), Positives = 299/331 (90%), Gaps = 10/331 (3%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF C++C+ PI D EFSMSGNRPYHK CYKEQHHPKCDVC NFIPTN AGLI
Sbjct: 206 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLI 265

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW+QKYCPSHERDGTPRCCSCERMEP+DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 266 EYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHE 325

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEI+EFYEGL+MKVEQQ+P+LLVER ALNEAMEGEK+GHHHLPETRGLCLSEEQT
Sbjct: 326 CQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQT 385

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTTVLRRPRIGAGY+LIDMITEP RLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR
Sbjct: 386 VTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 445

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSG-SDVASSSSSSASSSSSSPSSSSTSSK 299
           L GYPNLRP+VEEGICQVLAHMWLESE Y+GS   D+ASSSSS         +  S SSK
Sbjct: 446 LNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSS---------AVVSASSK 496

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           KG+RSDFEK LG+FFKHQIESD+SSAYGDG 
Sbjct: 497 KGERSDFEKKLGEFFKHQIESDSSSAYGDGF 527

Ubiquitin receptor that probably regulates developmental process.
Arabidopsis thaliana (taxid: 3702)

>sp|P0C7Q8|DA1_ARATH Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/330 (70%), Positives = 275/330 (83%), Gaps = 12/330 (3%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           + + WHPECFRC+ C+ PI++ EFS SGN P+HK CY+E++HPKCDVC +FIPTN AGLI
Sbjct: 188 LNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLI 247

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW+QKYCPSHE D TPRCCSCERMEPR+T+Y+ L+DGRKLCLECLDSA+MDT +
Sbjct: 248 EYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLDSAVMDTMQ 307

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYL+IQ FYEGLNMKVEQ+VPLLLVERQALNEA EGEKNGH+H+PETRGLCLSEEQT
Sbjct: 308 CQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQT 367

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           V+TV +R + G G +    ITEPY+L R+CEVTAILIL+GLPRLLTGSILAHEMMHAW+R
Sbjct: 368 VSTVRKRSKHGTG-KWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILAHEMMHAWMR 426

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKG+  L  DVEEGICQV+AH WL++E+ +G           S +S+++S SSSS   KK
Sbjct: 427 LKGFRTLSQDVEEGICQVMAHKWLDAELAAG-----------STNSNAASSSSSSQGLKK 475

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           G RS +E+ LG+FFKHQIESD S  YGDG 
Sbjct: 476 GPRSQYERKLGEFFKHQIESDASPVYGDGF 505

Ubiquitin receptor that limits final seed and organ size by restricting the period of cell proliferation. May act maternally to control seed mass.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/330 (66%), Positives = 270/330 (81%), Gaps = 6/330 (1%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M  F+HPECFRCHSC   IT+ EFS+SG +PYHK C+KE  HPKC+VC +FIPTN AGLI
Sbjct: 178 MGTFFHPECFRCHSCGYAITEHEFSLSGTKPYHKLCFKELTHPKCEVCHHFIPTNDAGLI 237

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYR HPFW QKYCPSHE D T RCCSCER+E  D +Y +L+DGR LCLEC+++AI DT E
Sbjct: 238 EYRCHPFWNQKYCPSHEYDKTARCCSCERLESWDVRYYTLEDGRSLCLECMETAITDTGE 297

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLY  I+++YEG+ MK++QQ+P+LLV+R+ALN+A+ GEKNG+HH+PETRGLCLSEEQT
Sbjct: 298 CQPLYHAIRDYYEGMYMKLDQQIPMLLVQREALNDAIVGEKNGYHHMPETRGLCLSEEQT 357

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VT+VLRRPR+GA +RL+ M T+P RL R+CEVTAIL+LYGLPRLLTG+ILAHE+MH WLR
Sbjct: 358 VTSVLRRPRLGA-HRLVGMRTQPQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLR 416

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           L G+ NL P+VEEGICQVL++MWLESE+ S       S+ +  ++SS ++ SSSS S+KK
Sbjct: 417 LNGFRNLNPEVEEGICQVLSYMWLESEVLSD-----PSTRNLPSTSSVATSSSSSFSNKK 471

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           G +S+ EK LG+FFKHQI  D S AYG G 
Sbjct: 472 GGKSNVEKKLGEFFKHQIAHDASPAYGGGF 501

Ubiquitin receptor that probably regulates developmental process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJX9|DAR7_ARATH Protein DA1-related 7 OS=Arabidopsis thaliana GN=DAR7 PE=2 SV=2

 Score =  348 bits (892), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/329 (55%), Positives = 234/329 (71%), Gaps = 15/329 (4%)

Query: 5   WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRA 64
           WHPECF C  C+ PI   EFS +  R  H  CY E+ HP C VC+   P       +Y+ 
Sbjct: 221 WHPECFCCRYCDKPIAMHEFSNTKGR-CHITCY-ERSHPNCHVCKKKFPGR-----KYKE 273

Query: 65  HPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPL 124
           HPFW +KYCP HE DGTP+CCSCER+EP  TKY+ L D R LC++C++ A+MDT+ECQPL
Sbjct: 274 HPFWKEKYCPFHEVDGTPKCCSCERLEPWGTKYVMLADNRWLCVKCMECAVMDTYECQPL 333

Query: 125 YLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTV 184
           + EI+EF+  LNMKVE++ PLLLVE++AL +A   EK  + H   TRG+CLSE Q V +V
Sbjct: 334 HFEIREFFGSLNMKVEKEFPLLLVEKEALKKAEAQEKIDNQHGVVTRGICLSEGQIVNSV 393

Query: 185 LRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGY 244
            ++P +G    L+ + TEP +++  CEVTAILILYGLPRLLTG ILAHEMMHAWLRL GY
Sbjct: 394 FKKPTMGPNGELVSLGTEPQKVVGGCEVTAILILYGLPRLLTGYILAHEMMHAWLRLNGY 453

Query: 245 PNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGKRS 304
            NL+ ++EEGICQVL HMWLES+ Y        SSS++++S+SSSS + ++ +SKKG +S
Sbjct: 454 RNLKLELEEGICQVLGHMWLESQTY--------SSSAAASSASSSSRTPAANASKKGAQS 505

Query: 305 DFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
           D+EK L +F K QIE+D S  YG G  KV
Sbjct: 506 DYEKKLVEFCKDQIETDDSPVYGVGFRKV 534

Ubiquitin receptor that probably regulates developmental process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  339 bits (870), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/335 (54%), Positives = 234/335 (69%), Gaps = 13/335 (3%)

Query: 3    AFWHPECFRCHSCNLPITDVEFS-MSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIE 61
            + WHP+CF C  C  PI   E S + G   YHK CYKE  HP C VC+  IP  + GL +
Sbjct: 1258 SVWHPQCFCCLRCREPIAMNEISDLRG--MYHKPCYKELRHPNCYVCEKKIPRTAEGL-K 1314

Query: 62   YRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC 121
            Y  HPFW++ YCPSH+ DGTP+CCSCER+E   T+Y+ L D R LC EC+DSAIMD+ EC
Sbjct: 1315 YHEHPFWMETYCPSHDGDGTPKCCSCERLEHCGTQYVMLADFRWLCRECMDSAIMDSDEC 1374

Query: 122  QPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK---NGHHHLPETRGLCLSEE 178
            QPL+ EI+EF+EGL+MK+E++ P+ LVE+ ALN+A + EK    G   L   RG+CLSEE
Sbjct: 1375 QPLHFEIREFFEGLHMKIEEEFPVYLVEKNALNKAEKEEKIDKQGDQCLMVVRGICLSEE 1434

Query: 179  QTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAW 238
            Q VT+V +  R     +++D +TE  R++R+CEVTAILILYGLPRLLTG ILAHEMMHA+
Sbjct: 1435 QIVTSVSQGVRRMLNKQILDTVTESQRVVRKCEVTAILILYGLPRLLTGYILAHEMMHAY 1494

Query: 239  LRLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSS 298
            LRL GY NL   +EEG+CQVL +MWLE + Y      V  +++ ++SSSSS    S+T+S
Sbjct: 1495 LRLNGYRNLNMVLEEGLCQVLGYMWLECQTY------VFDTATIASSSSSSRTPLSTTTS 1548

Query: 299  KKGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
            KK   SDFEK L  F KHQIE+D S  +GDG  KV
Sbjct: 1549 KKVDPSDFEKRLVNFCKHQIETDESPFFGDGFRKV 1583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJX8|DAR6_ARATH Protein DA1-related 6 OS=Arabidopsis thaliana GN=DAR6 PE=2 SV=1

 Score =  337 bits (864), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 177/334 (52%), Positives = 238/334 (71%), Gaps = 16/334 (4%)

Query: 3   AFWHPECFRCHSCNLPIT--DVEFSMSGNR-PYHKHCYKEQHHPKCDVCQNFIPTNSAGL 59
             WHP CF C +C+ PI   D+E  +S +R  +HK CY+      C VC+         +
Sbjct: 304 VLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYERY----CYVCK------EKKM 353

Query: 60  IEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119
             Y  HPFW ++YCP HE DGTP+CCSCER+EPR++ Y+ L DGR LCLEC++SA+MD+ 
Sbjct: 354 KTYNNHPFWEERYCPVHEADGTPKCCSCERLEPRESNYVMLADGRWLCLECMNSAVMDSD 413

Query: 120 ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQ 179
           ECQPL+ ++++F+EGLNMK+E++ P LLVE+QALN+A + EK  + +   TRG+CLSEEQ
Sbjct: 414 ECQPLHFDMRDFFEGLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQ 473

Query: 180 TVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWL 239
            V +V +RP  G   +L+ M TE  ++ R CEVTAILILYGLPRLLTG ILAHEMMHA+L
Sbjct: 474 IVDSVSQRPVRGPNNKLVGMATESQKVTRECEVTAILILYGLPRLLTGYILAHEMMHAYL 533

Query: 240 RLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSK 299
           RL G+ NL   +EEGICQVL H+WL+S+ Y+ + +   + +SSSASSSS +P ++S +SK
Sbjct: 534 RLNGHRNLNNILEEGICQVLGHLWLDSQTYATADA--TADASSSASSSSRTPPAAS-ASK 590

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
           KG+ SDF+K L +F K+QIE+D S  YG G   V
Sbjct: 591 KGEWSDFDKKLVEFCKNQIETDDSPVYGLGFRTV 624

Ubiquitin receptor that probably regulates developmental process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WJ0|DAR5_ARATH Protein DA1-related 5 OS=Arabidopsis thaliana GN=DAR5 PE=2 SV=2

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/334 (51%), Positives = 229/334 (68%), Gaps = 19/334 (5%)

Query: 3   AFWHPECFRCHSCNLPIT--DVEFSMSGNR-PYHKHCYKEQHHPKCDVCQNFIPTNSAGL 59
             WHP CF C SC+ PI   ++E  +S +R  +HK CY+      C VC+         +
Sbjct: 365 VLWHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYERY----CYVCK------EKKM 414

Query: 60  IEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119
             Y  HPFW ++YCP HE DGTP+CCSCER+EPR TKY  L DGR LCLEC  SA MD+ 
Sbjct: 415 KTYNIHPFWEERYCPVHEADGTPKCCSCERLEPRGTKYGKLSDGRWLCLECGKSA-MDSD 473

Query: 120 ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQ 179
           ECQPLY ++++F+E LNMK+E++ PL+LV ++ LN+  + EK  +H+    R  C+SE++
Sbjct: 474 ECQPLYFDMRDFFESLNMKIEKEFPLILVRKELLNK--KEEKIDNHYEVLIRAYCMSEQK 531

Query: 180 TVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWL 239
            +T V   PR G   +LIDM TEP  ++  C+VTAILILYGLPRLLTG ILAHEMMHAWL
Sbjct: 532 IMTYVSEEPRTGQNKQLIDMDTEPQGVVHECKVTAILILYGLPRLLTGYILAHEMMHAWL 591

Query: 240 RLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSK 299
           RL G+ NL   +EEGICQVL H+WLES+ Y+ + +   + ++S++SSSS +P ++S +SK
Sbjct: 592 RLNGHMNLNNILEEGICQVLGHLWLESQTYATADT--TADAASASSSSSRTPPAAS-ASK 648

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
           KG+ SDF+K L +F K+QIE+D S  YG G   V
Sbjct: 649 KGEWSDFDKKLVEFCKNQIETDESPVYGLGFRTV 682

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVR6|DAR3_ARATH Protein DA1-related 3 OS=Arabidopsis thaliana GN=DAR3 PE=2 SV=2

 Score =  311 bits (798), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 169/331 (51%), Positives = 225/331 (67%), Gaps = 6/331 (1%)

Query: 6   HPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK-CDVCQNFIPTNSAGLIEYRA 64
           +P C  C  C+ P    E    G   +H  CYKE +  + C VCQ  IP N+ G+ ++  
Sbjct: 93  NPRCLCCFHCHRPFVMHEILKKGK--FHIDCYKEYYRNRNCYVCQQKIPVNAEGIRKFSE 150

Query: 65  HPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPL 124
           HPFW +KYCP H+ DGT +CCSCER+EPR T Y+ L D R LC+EC+ SA+MDT+E QPL
Sbjct: 151 HPFWKEKYCPIHDEDGTAKCCSCERLEPRGTNYVMLGDFRWLCIECMGSAVMDTNEVQPL 210

Query: 125 YLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTV 184
           + EI+EF+EGL +KV+++  LLLVE+QALN+A E EK  +H    TRGLC+SEEQ V ++
Sbjct: 211 HFEIREFFEGLFLKVDKEFALLLVEKQALNKAEEEEKIDYHRAAVTRGLCMSEEQIVPSI 270

Query: 185 LRRPRIGAGYRLI-DMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKG 243
           ++ PR+G   +LI D++TE  R +   EVT ILI+YGLPRLLTG ILAHEMMHAWLRL G
Sbjct: 271 IKGPRMGPDNQLITDIVTESQR-VSGFEVTGILIIYGLPRLLTGYILAHEMMHAWLRLNG 329

Query: 244 YPNLRPDVEEGICQVLAHMWLESE-IYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGK 302
           Y NL+ ++EEG+CQ L   WLES+   S   +  A+ +SSS+ SSS++P ++ TS K   
Sbjct: 330 YKNLKLELEEGLCQALGLRWLESQTFASTDAAAAAAVASSSSFSSSTAPPAAITSKKSDD 389

Query: 303 RSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
            S FEK L +F  +QI+ D S  YG G  +V
Sbjct: 390 WSIFEKKLVEFCMNQIKEDDSPVYGLGFKQV 420

Arabidopsis thaliana (taxid: 3702)

>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           ++  WH  C +C  C + + D  FS +G+  Y K  + ++   KC  CQ  IP      +
Sbjct: 46  LDRHWHSSCLKCADCQMQLADRCFSRAGS-VYCKEDFFKRFGTKCTACQQGIPPTQ---V 101

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114
             +A  F    +C +        C  C R      ++  ++DGR +C E  ++A
Sbjct: 102 VRKAQDFVYHLHCFA--------CIICNRQLATGDEFYLMEDGRLVCKEDYETA 147

May play a critical role in the development of respiratory control mechanisms and in the normal growth and maturation of the lung.

Mus musculus (taxid: 10090)

>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           ++  WH  C +C  C + + D  FS +G+  Y K  + ++   KC  CQ  IP      +
Sbjct: 46  LDRHWHSSCLKCADCQMQLADRCFSRAGS-VYCKEDFFKRFGTKCTACQQGIPPTQ---V 101

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114
             +A  F    +C +        C  C R      ++  ++DGR +C E  ++A
Sbjct: 102 VRKAQDFVYHLHCFA--------CIICNRQLATGDEFYLMEDGRLVCKEDYETA 147

May play a critical role in the development of respiratory control mechanisms and in the normal growth and maturation of the lung.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
356496814	546	PREDICTED: protein DA1-related 1-like is	0.973	0.598	0.869	1e-165
356496816	528	PREDICTED: protein DA1-related 1-like is	0.973	0.619	0.869	1e-165
356537914	563	PREDICTED: protein DA1-related 1-like is	0.976	0.582	0.869	1e-164
356537916	530	PREDICTED: protein DA1-related 1-like is	0.976	0.618	0.869	1e-163
449460612	473	PREDICTED: protein DA1-related 1-like [C	0.982	0.697	0.861	1e-163
297798208	558	hypothetical protein ARALYDRAFT_328082 [	0.967	0.582	0.861	1e-162
356502199	531	PREDICTED: protein DA1-related 1-like [G	0.982	0.621	0.861	1e-160
240256211	553	LIM domain-containing protein [Arabidops	0.955	0.580	0.848	1e-160
17065046	553	Unknown protein [Arabidopsis thaliana] g	0.955	0.580	0.845	1e-160
356561263	532	PREDICTED: LOW QUALITY PROTEIN: protein	0.982	0.620	0.854	1e-159

>gi|356496814|ref|XP_003517260.1| PREDICTED: protein DA1-related 1-like isoform 1 [Glycine max]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/330 (86%), Positives = 308/330 (93%), Gaps = 3/330 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF CH+C+LPITD EFSMS NRPYHK CY+E+HHP+CDVC+NFIPTNS+GLI
Sbjct: 193 MGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLI 252

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFWLQKYCPSHE DGTPRCCSCERME RDTKYL LDDGRKLCLECLDS+IMDTHE
Sbjct: 253 EYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHE 312

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEIQEFYEGLNMK+EQQ+P+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 313 CQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 372

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTT+ RRPRIGAGYR IDMITEPYRLIR CEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 373 VTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 432

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKGYPNL P+VEEGICQVLAHMWLESE+YSG+G+D ASSS+SS+SSSS    SSS S+KK
Sbjct: 433 LKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSS---PSSSVSTKK 489

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           GKRSDFEK LG+FFKHQIESDTSSAYGDG 
Sbjct: 490 GKRSDFEKKLGEFFKHQIESDTSSAYGDGF 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496816|ref|XP_003517261.1| PREDICTED: protein DA1-related 1-like isoform 2 [Glycine max]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/330 (86%), Positives = 308/330 (93%), Gaps = 3/330 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF CH+C+LPITD EFSMS NRPYHK CY+E+HHP+CDVC+NFIPTNS+GLI
Sbjct: 175 MGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLI 234

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFWLQKYCPSHE DGTPRCCSCERME RDTKYL LDDGRKLCLECLDS+IMDTHE
Sbjct: 235 EYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHE 294

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEIQEFYEGLNMK+EQQ+P+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 295 CQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 354

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTT+ RRPRIGAGYR IDMITEPYRLIR CEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 355 VTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 414

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKGYPNL P+VEEGICQVLAHMWLESE+YSG+G+D ASSS+SS+SSSS    SSS S+KK
Sbjct: 415 LKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSS---PSSSVSTKK 471

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           GKRSDFEK LG+FFKHQIESDTSSAYGDG 
Sbjct: 472 GKRSDFEKKLGEFFKHQIESDTSSAYGDGF 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537914|ref|XP_003537451.1| PREDICTED: protein DA1-related 1-like isoform 1 [Glycine max]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 287/330 (86%), Positives = 304/330 (92%), Gaps = 2/330 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF CH+C+LPITD EFSMS NRPYHK CY+E+HHP+CDVC+NFIPTNS+GLI
Sbjct: 209 MGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLI 268

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFWLQKYCPSHE DGT RCCSCERMEPRDTKYL LDDGRKLCLECLDS+IMDTHE
Sbjct: 269 EYRAHPFWLQKYCPSHELDGTSRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHE 328

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEIQEFYEGLNMK+EQQ+P+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 329 CQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 388

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTT+ RRPRI AGYR IDMITEPYRLIR CEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 389 VTTISRRPRIAAGYRAIDMITEPYRLIRCCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 448

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKGYPNL P+VEEGICQVLAHMWLESE+YSG G+D ASSS+SS SSSS S SS ST  KK
Sbjct: 449 LKGYPNLSPEVEEGICQVLAHMWLESELYSGFGNDGASSSTSSLSSSSPSSSSVST--KK 506

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           GKRSDFEK LG FFKHQIESDTSSAYGDG 
Sbjct: 507 GKRSDFEKKLGDFFKHQIESDTSSAYGDGF 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537916|ref|XP_003537452.1| PREDICTED: protein DA1-related 1-like isoform 2 [Glycine max]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/330 (86%), Positives = 304/330 (92%), Gaps = 2/330 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF CH+C+LPITD EFSMS NRPYHK CY+E+HHP+CDVC+NFIPTNS+GLI
Sbjct: 176 MGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLI 235

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFWLQKYCPSHE DGT RCCSCERMEPRDTKYL LDDGRKLCLECLDS+IMDTHE
Sbjct: 236 EYRAHPFWLQKYCPSHELDGTSRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHE 295

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEIQEFYEGLNMK+EQQ+P+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 296 CQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 355

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTT+ RRPRI AGYR IDMITEPYRLIR CEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 356 VTTISRRPRIAAGYRAIDMITEPYRLIRCCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 415

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKGYPNL P+VEEGICQVLAHMWLESE+YSG G+D ASSS+SS SSSS S SS ST  KK
Sbjct: 416 LKGYPNLSPEVEEGICQVLAHMWLESELYSGFGNDGASSSTSSLSSSSPSSSSVST--KK 473

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           GKRSDFEK LG FFKHQIESDTSSAYGDG 
Sbjct: 474 GKRSDFEKKLGDFFKHQIESDTSSAYGDGF 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460612|ref|XP_004148039.1| PREDICTED: protein DA1-related 1-like [Cucumis sativus] gi|449502709|ref|XP_004161720.1| PREDICTED: protein DA1-related 1-like [Cucumis sativus]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/333 (86%), Positives = 310/333 (93%), Gaps = 3/333 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M A WHPECFRC++CN PITD EFSMS NRPYHK CYKEQHHP+CDVC+NFIPTNS+GLI
Sbjct: 115 MGAVWHPECFRCNTCNEPITDYEFSMSDNRPYHKSCYKEQHHPRCDVCRNFIPTNSSGLI 174

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           E+R HPFW Q+YCPSHE+DGTPRCCSCERMEPRDT YL LDDGRKLCLECLDSAIMDTHE
Sbjct: 175 EFRKHPFWSQQYCPSHEKDGTPRCCSCERMEPRDTSYLLLDDGRKLCLECLDSAIMDTHE 234

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEIQEFYEGLNMKVEQQVP+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 235 CQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 294

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           V T+ +RPRIGAGYR+IDM TEPYRL+RRCEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 295 VATISKRPRIGAGYRIIDMFTEPYRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 354

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDV---ASSSSSSASSSSSSPSSSSTS 297
           LKGYPNL+P+VEEGICQVLAHMWL+SE+YS +GS V   +SSS+SS+SSS SS SSSSTS
Sbjct: 355 LKGYPNLKPEVEEGICQVLAHMWLDSEMYSITGSGVASTSSSSASSSSSSPSSSSSSSTS 414

Query: 298 SKKGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           SKKG+RSDFEK LG FFKHQIESDTSSAYGDG 
Sbjct: 415 SKKGRRSDFEKKLGDFFKHQIESDTSSAYGDGF 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798208|ref|XP_002866988.1| hypothetical protein ARALYDRAFT_328082 [Arabidopsis lyrata subsp. lyrata] gi|297312824|gb|EFH43247.1| hypothetical protein ARALYDRAFT_328082 [Arabidopsis lyrata subsp. lyrata]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/331 (86%), Positives = 303/331 (91%), Gaps = 6/331 (1%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF CH+C+ PI D EFSMSGNRPYHK CYKEQHHPKCDVC NFIPTN AGLI
Sbjct: 207 MGGVWHPECFCCHACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLI 266

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW+QKYCPSHERDGTPRCCSCERMEP+DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 267 EYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHE 326

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEI+EFYEGL+MKVEQQ+P+LLVER ALNEAMEGEK+GHHHLPETRGLCLSEEQT
Sbjct: 327 CQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQT 386

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTTVLRRPRIGAGY+LIDMITEP RLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR
Sbjct: 387 VTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 446

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSG-SDVASSSSSSASSSSSSPSSSSTSSK 299
           L GYPNLRP+VEEGICQVLAHMWLESE Y+GS   D+ASSSSSS+SS     +  S SSK
Sbjct: 447 LNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSSSSSS-----AVVSASSK 501

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           KG+RSDFEK LG+FFKHQIESD+SSAYGDG 
Sbjct: 502 KGERSDFEKKLGEFFKHQIESDSSSAYGDGF 532

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502199|ref|XP_003519908.1| PREDICTED: protein DA1-related 1-like [Glycine max]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/331 (86%), Positives = 308/331 (93%), Gaps = 1/331 (0%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M  +WHPECF CH+C LPITD EFSMSGNR YHK CYKE HHP+CDVC+NFIP NSAGLI
Sbjct: 174 MGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLI 233

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFWLQKYCPSHERDGTPRCCSC+R+E  DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 234 EYRAHPFWLQKYCPSHERDGTPRCCSCQRLESVDTKYLLLDDGRKLCLECLDSAIMDTHE 293

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLY+EIQEFYEGL+MK+EQQVP+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 294 CQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 353

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           V T+LRRPRIGAGY+LIDMITEP+RL+RRCEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 354 VPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 413

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVA-SSSSSSASSSSSSPSSSSTSSK 299
           LKGY NLRP+VEEGICQVLAHMWLESEI  G+G + A SSSSSS+SSSSSS  SSS+SSK
Sbjct: 414 LKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSSPSSSSSSK 473

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           KGKRSDFEK LGK+FKHQIESD+S+AYGDG 
Sbjct: 474 KGKRSDFEKKLGKYFKHQIESDSSAAYGDGF 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256211|ref|NP_195404.6| LIM domain-containing protein [Arabidopsis thaliana] gi|334302915|sp|Q8W4F0.3|DAR1_ARATH RecName: Full=Protein DA1-related 1 gi|332661310|gb|AEE86710.1| LIM domain-containing protein [Arabidopsis thaliana]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 281/331 (84%), Positives = 299/331 (90%), Gaps = 10/331 (3%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF C++C+ PI D EFSMSGNRPYHK CYKEQHHPKCDVC NFIPTN AGLI
Sbjct: 206 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLI 265

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW+QKYCPSHERDGTPRCCSCERMEP+DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 266 EYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHE 325

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEI+EFYEGL+MKVEQQ+P+LLVER ALNEAMEGEK+GHHHLPETRGLCLSEEQT
Sbjct: 326 CQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQT 385

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTTVLRRPRIGAGY+LIDMITEP RLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR
Sbjct: 386 VTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 445

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSG-SDVASSSSSSASSSSSSPSSSSTSSK 299
           L GYPNLRP+VEEGICQVLAHMWLESE Y+GS   D+ASSSSS         +  S SSK
Sbjct: 446 LNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSS---------AVVSASSK 496

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           KG+RSDFEK LG+FFKHQIESD+SSAYGDG 
Sbjct: 497 KGERSDFEKKLGEFFKHQIESDSSSAYGDGF 527

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17065046|gb|AAL32677.1| Unknown protein [Arabidopsis thaliana] gi|21387149|gb|AAM47978.1| unknown protein [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/331 (84%), Positives = 299/331 (90%), Gaps = 10/331 (3%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M   WHPECF C++C+ PI D EFSMSGNRPYHK CYKEQHHPKCDVC NFIPTN AGLI
Sbjct: 206 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLI 265

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW+QKYCPSHERDGTPRCCSCERMEP+DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 266 EYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHE 325

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLYLEI+EFYEGL+MKVEQQ+P+LLVER ALNEAMEGEK+GHHHLPETRGLCLSEEQT
Sbjct: 326 CQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQT 385

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           VTTVLRRPRIGAGY+LIDMITEP RLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR
Sbjct: 386 VTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 445

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSG-SDVASSSSSSASSSSSSPSSSSTSSK 299
           L GYPNLRP+VEEGICQVLAHMWLESE Y+GS   D+ASSSSS         +  S SSK
Sbjct: 446 LNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSS---------AVVSASSK 496

Query: 300 KGKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           KG+RSDFE+ LG+FFKHQIESD+SSAYGDG 
Sbjct: 497 KGERSDFEEKLGEFFKHQIESDSSSAYGDGF 527

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561263|ref|XP_003548902.1| PREDICTED: LOW QUALITY PROTEIN: protein DA1-related 1-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/330 (85%), Positives = 305/330 (92%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           M  +WHPECF CH+C LPITD EFSMSGNR YHK CYKE HHP+CDVC+ FIP NSAGLI
Sbjct: 176 MGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKKFIPPNSAGLI 235

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
           EYRAHPFW QKYCPSHE DGTPRCCSC+RME  DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct: 236 EYRAHPFWRQKYCPSHEGDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHE 295

Query: 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
           CQPLY+EIQEFYEGL+MK+EQQVP+LLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT
Sbjct: 296 CQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 355

Query: 181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
           + T+LRRPRIGAGY+LIDMITEP+RL+RRCEVTAIL+LYGLPRLLTGSILAHEMMHAWLR
Sbjct: 356 IPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLR 415

Query: 241 LKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKK 300
           LKGY NLRP+VEEGICQVLAHMWLESEI  G+G + ASSSSSS+SSSSSS  SSS+SSKK
Sbjct: 416 LKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSPSSSSSSKK 475

Query: 301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGL 330
           GKRSDFEK LGK+FKHQIESD+S+AYGDG 
Sbjct: 476 GKRSDFEKKLGKYFKHQIESDSSAAYGDGF 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2115290	553	AT4G36860 [Arabidopsis thalian	0.955	0.580	0.817	6e-151
TAIR|locus:2202175	532	DA1 "DA1" [Arabidopsis thalian	0.943	0.595	0.680	2.6e-127
TAIR|locus:2063932	528	DAR2 "DA1-related protein 2" [	0.961	0.611	0.635	9.8e-119
TAIR|locus:2170338	1613	DAR4 "DA1-related protein 4" [	0.952	0.198	0.525	2.5e-87
TAIR|locus:2154880	644	DAR6 "DA1-related protein 6" [	0.940	0.490	0.503	8.9e-86
TAIR|locus:2154890	702	DAR5 "DA1-related protein 5" [	0.931	0.445	0.493	2e-81
WB|WBGene00012379	192	Y1A5A.1 [Caenorhabditis elegan	0.279	0.489	0.318	9.6e-06
UNIPROTKB|Q14192	279	FHL2 "Four and a half LIM doma	0.270	0.326	0.320	3.2e-05
ZFIN|ZDB-GENE-031219-1	280	fhl1b "four and a half LIM dom	0.285	0.342	0.279	3.2e-05
ZFIN|ZDB-GENE-050522-56	377	lims2 "LIM and senescent cell	0.291	0.259	0.315	3.6e-05

TAIR|locus:2115290 AT4G36860 [Arabidopsis thaliana (taxid:3702)]

 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 269/329 (81%), Positives = 284/329 (86%)

Query:     1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
             M   WHPECF C++C+ PI D EFSMSGNRPYHK CYKEQHHPKCDVC NFIPTN AGLI
Sbjct:   206 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLI 265

Query:    61 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
             EYRAHPFW+QKYCPSHERDGTPRCCSCERMEP+DTKYL LDDGRKLCLECLDSAIMDTHE
Sbjct:   266 EYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLILDDGRKLCLECLDSAIMDTHE 325

Query:   121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
             CQPLYLEI+EFYEGL+MKVEQQ+P+LLVER ALNEAMEGEK+GHHHLPETRGLCLSEEQT
Sbjct:   326 CQPLYLEIREFYEGLHMKVEQQIPMLLVERSALNEAMEGEKHGHHHLPETRGLCLSEEQT 385

Query:   181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
             VTTVLRRPRIGAGY+LIDMITEP RLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR
Sbjct:   386 VTTVLRRPRIGAGYKLIDMITEPCRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 445

Query:   241 LKGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK 300
             L GYPNLRP+VEEGICQVLAHMWLESE Y                             KK
Sbjct:   446 LNGYPNLRPEVEEGICQVLAHMWLESETYAGSTLVDIASSSSSAVVSASS--------KK 497

Query:   301 GKRSDFEKDLGKFFKHQIESDTSSAYGDG 329
             G+RSDFEK LG+FFKHQIESD+SSAYGDG
Sbjct:   498 GERSDFEKKLGEFFKHQIESDSSSAYGDG 526

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2202175 DA1 "DA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 224/329 (68%), Positives = 262/329 (79%)

Query:     1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
             + + WHPECFRC+ C+ PI++ EFS SGN P+HK CY+E++HPKCDVC +FIPTN AGLI
Sbjct:   188 LNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLI 247

Query:    61 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
             EYRAHPFW+QKYCPSHE D TPRCCSCERMEPR+T+Y+ L+DGRKLCLECLDSA+MDT +
Sbjct:   248 EYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLDSAVMDTMQ 307

Query:   121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
             CQPLYL+IQ FYEGLNMKVEQ+VPLLLVERQALNEA EGEKNGH+H+PETRGLCLSEEQT
Sbjct:   308 CQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQT 367

Query:   181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
             V+TV +R + G G +    ITEPY+L R+CEVTAILIL+GLPRLLTGSILAHEMMHAW+R
Sbjct:   368 VSTVRKRSKHGTG-KWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILAHEMMHAWMR 426

Query:   241 LKGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK 300
             LKG+  L  DVEEGICQV+AH WL++E+                              KK
Sbjct:   427 LKGFRTLSQDVEEGICQVMAHKWLDAEL-----------AAGSTNSNAASSSSSSQGLKK 475

Query:   301 GKRSDFEKDLGKFFKHQIESDTSSAYGDG 329
             G RS +E+ LG+FFKHQIESD S  YGDG
Sbjct:   476 GPRSQYERKLGEFFKHQIESDASPVYGDG 504

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IDA;IPI

GO:0046621 "negative regulation of organ growth" evidence=IMP

GO:0048317 "seed morphogenesis" evidence=IMP

GO:0048482 "ovule morphogenesis" evidence=IMP

TAIR|locus:2063932 DAR2 "DA1-related protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 209/329 (63%), Positives = 254/329 (77%)

Query:     1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
             M  F+HPECFRCHSC   IT+ EFS+SG +PYHK C+KE  HPKC+VC +FIPTN AGLI
Sbjct:   178 MGTFFHPECFRCHSCGYAITEHEFSLSGTKPYHKLCFKELTHPKCEVCHHFIPTNDAGLI 237

Query:    61 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120
             EYR HPFW QKYCPSHE D T RCCSCER+E  D +Y +L+DGR LCLEC+++AI DT E
Sbjct:   238 EYRCHPFWNQKYCPSHEYDKTARCCSCERLESWDVRYYTLEDGRSLCLECMETAITDTGE 297

Query:   121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQT 180
             CQPLY  I+++YEG+ MK++QQ+P+LLV+R+ALN+A+ GEKNG+HH+PETRGLCLSEEQT
Sbjct:   298 CQPLYHAIRDYYEGMYMKLDQQIPMLLVQREALNDAIVGEKNGYHHMPETRGLCLSEEQT 357

Query:   181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
             VT+VLRRPR+GA +RL+ M T+P RL R+CEVTAIL+LYGLPRLLTG+ILAHE+MH WLR
Sbjct:   358 VTSVLRRPRLGA-HRLVGMRTQPQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLR 416

Query:   241 LKGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK 300
             L G+ NL P+VEEGICQVL++MWLESE+                              KK
Sbjct:   417 LNGFRNLNPEVEEGICQVLSYMWLESEVLSDPSTRNLPSTSSVATSSSSSFSN-----KK 471

Query:   301 GKRSDFEKDLGKFFKHQIESDTSSAYGDG 329
             G +S+ EK LG+FFKHQI  D S AYG G
Sbjct:   472 GGKSNVEKKLGEFFKHQIAHDASPAYGGG 500

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010088 "phloem development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2170338 DAR4 "DA1-related protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.5e-87, P = 2.5e-87
 Identities = 175/333 (52%), Positives = 217/333 (65%)

Query:     5 WHPECFRCHSCNLPITDVEFS-MSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYR 63
             WHP+CF C  C  PI   E S + G   YHK CYKE  HP C VC+  IP  + GL +Y 
Sbjct:  1260 WHPQCFCCLRCREPIAMNEISDLRGM--YHKPCYKELRHPNCYVCEKKIPRTAEGL-KYH 1316

Query:    64 AHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQP 123
              HPFW++ YCPSH+ DGTP+CCSCER+E   T+Y+ L D R LC EC+DSAIMD+ ECQP
Sbjct:  1317 EHPFWMETYCPSHDGDGTPKCCSCERLEHCGTQYVMLADFRWLCRECMDSAIMDSDECQP 1376

Query:   124 LYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK---NGHHHLPETRGLCLSEEQT 180
             L+ EI+EF+EGL+MK+E++ P+ LVE+ ALN+A + EK    G   L   RG+CLSEEQ 
Sbjct:  1377 LHFEIREFFEGLHMKIEEEFPVYLVEKNALNKAEKEEKIDKQGDQCLMVVRGICLSEEQI 1436

Query:   181 VTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLR 240
             VT+V +  R     +++D +TE  R++R+CEVTAILILYGLPRLLTG ILAHEMMHA+LR
Sbjct:  1437 VTSVSQGVRRMLNKQILDTVTESQRVVRKCEVTAILILYGLPRLLTGYILAHEMMHAYLR 1496

Query:   241 LKGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK 300
             L GY NL   +EEG+CQVL +MWLE + Y                             KK
Sbjct:  1497 LNGYRNLNMVLEEGLCQVLGYMWLECQTYVFDTATIASSSSSSRTPLSTTTS------KK 1550

Query:   301 GKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
                SDFEK L  F KHQIE+D S  +GDG  KV
Sbjct:  1551 VDPSDFEKRLVNFCKHQIETDESPFFGDGFRKV 1583

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009409 "response to cold" evidence=IMP

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2154880 DAR6 "DA1-related protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 167/332 (50%), Positives = 220/332 (66%)

Query:     5 WHPECFRCHSCNLPIT--DVEFSMSGNR-PYHKHCYKEQHHPKCDVCQNFIPTNSAGLIE 61
             WHP CF C +C+ PI   D+E  +S +R  +HK CY E++   C VC+         +  
Sbjct:   306 WHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCY-ERY---CYVCKE------KKMKT 355

Query:    62 YRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC 121
             Y  HPFW ++YCP HE DGTP+CCSCER+EPR++ Y+ L DGR LCLEC++SA+MD+ EC
Sbjct:   356 YNNHPFWEERYCPVHEADGTPKCCSCERLEPRESNYVMLADGRWLCLECMNSAVMDSDEC 415

Query:   122 QPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV 181
             QPL+ ++++F+EGLNMK+E++ P LLVE+QALN+A + EK  + +   TRG+CLSEEQ V
Sbjct:   416 QPLHFDMRDFFEGLNMKIEKEFPFLLVEKQALNKAEKEEKIDYQYEVVTRGICLSEEQIV 475

Query:   182 TTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRL 241
              +V +RP  G   +L+ M TE  ++ R CEVTAILILYGLPRLLTG ILAHEMMHA+LRL
Sbjct:   476 DSVSQRPVRGPNNKLVGMATESQKVTRECEVTAILILYGLPRLLTGYILAHEMMHAYLRL 535

Query:   242 KGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKG 301
              G+ NL   +EEGICQVL H+WL+S+ Y                             KKG
Sbjct:   536 NGHRNLNNILEEGICQVLGHLWLDSQTYATADATADASSSASSSSRTPPAASAS---KKG 592

Query:   302 KRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
             + SDF+K L +F K+QIE+D S  YG G   V
Sbjct:   593 EWSDFDKKLVEFCKNQIETDDSPVYGLGFRTV 624

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2154890 DAR5 "DA1-related protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 164/332 (49%), Positives = 211/332 (63%)

Query:     5 WHPECFRCHSCNLPIT--DVEFSMSGNR-PYHKHCYKEQHHPKCDVCQNFIPTNSAGLIE 61
             WHP CF C SC+ PI   ++E  +S +R  +HK CY E++   C VC+         +  
Sbjct:   367 WHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCY-ERY---CYVCKE------KKMKT 416

Query:    62 YRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC 121
             Y  HPFW ++YCP HE DGTP+CCSCER+EPR TKY  L DGR LCLEC  SA MD+ EC
Sbjct:   417 YNIHPFWEERYCPVHEADGTPKCCSCERLEPRGTKYGKLSDGRWLCLECGKSA-MDSDEC 475

Query:   122 QPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV 181
             QPLY ++++F+E LNMK+E++ PL+LV ++ LN+  + EK  +H+    R  C+SE++ +
Sbjct:   476 QPLYFDMRDFFESLNMKIEKEFPLILVRKELLNK--KEEKIDNHYEVLIRAYCMSEQKIM 533

Query:   182 TTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRL 241
             T V   PR G   +LIDM TEP  ++  C+VTAILILYGLPRLLTG ILAHEMMHAWLRL
Sbjct:   534 TYVSEEPRTGQNKQLIDMDTEPQGVVHECKVTAILILYGLPRLLTGYILAHEMMHAWLRL 593

Query:   242 KGYPNLRPDVEEGICQVLAHMWLESEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKG 301
              G+ NL   +EEGICQVL H+WLES+ Y                             KKG
Sbjct:   594 NGHMNLNNILEEGICQVLGHLWLESQTYATADTTADAASASSSSSRTPPAASAS---KKG 650

Query:   302 KRSDFEKDLGKFFKHQIESDTSSAYGDGLGKV 333
             + SDF+K L +F K+QIE+D S  YG G   V
Sbjct:   651 EWSDFDKKLVEFCKNQIETDESPVYGLGFRTV 682

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

WB|WBGene00012379 Y1A5A.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 35/110 (31%), Positives = 47/110 (42%)

Query:     1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
             M   WHP+ F C SC  PI    F  + N  Y   C+ ++++PKC  C   +      L+
Sbjct:    82 MNRLWHPDHFTCSSCKRPIKQT-FQAADNHAYCVQCFAQKYNPKCAGCMETLVDTC--LL 138

Query:    61 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110
                 H  W       H R  T  C SC R  P    YL +DD +   L+C
Sbjct:   139 ALDRH--W-------HPRCFT--CSSCNRPLPNGEFYL-VDD-KPYDLDC 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q14192 FHL2 "Four and a half LIM domains protein 2" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 34/106 (32%), Positives = 46/106 (43%)

Query:     5 WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRA 64
             WH  CF CH C  PI    F    N+ +   CY++QH  +C  C+  I T   G + YR 
Sbjct:   122 WHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITT---GGVTYRE 178

Query:    65 HPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110
              P W  K C          C +C R +    ++ + DD    CL C
Sbjct:   179 QP-W-HKECFV--------CTAC-RKQLSGQRFTARDDFA-YCLNC 212

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0055014 "atrial cardiac muscle cell development" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0060347 "heart trabecula formation" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0050681 "androgen receptor binding" evidence=NAS

GO:0030521 "androgen receptor signaling pathway" evidence=NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009725 "response to hormone stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-031219-1 fhl1b "four and a half LIM domains 1b" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 31/111 (27%), Positives = 50/111 (45%)

Query:     5 WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRA 64
             WH ECF+C+ C  PI +  F    N  Y   C++++   +C  C+  I T   G + Y+ 
Sbjct:   122 WHDECFKCYQCQKPIGNKSFITKNNNVYCSPCHEKKFAKQCACCKKPITT---GGVNYQD 178

Query:    65 HPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 115
              P W       H       C SC R     T++ S ++ +  C++C  S +
Sbjct:   179 QP-W-------HSECFV--CSSC-RKPLAGTRFTSHEE-KVYCVDCYKSTV 217

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050522-56 lims2 "LIM and senescent cell antigen-like domains 2" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 36/114 (31%), Positives = 46/114 (40%)

Query:     1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD--VCQNFIPTNSAG 58
             M + WHP+CF C  C   + DV F  SG RP  + C+  Q        VCQ  +      
Sbjct:   132 MNSSWHPDCFCCEVCEAVLADVGFVKSGGRPLCRSCHSRQKALSLGKHVCQKCLCVVEEP 191

Query:    59 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLD 112
             L+ YR+ P     Y P H       C  C +    D + L    G   CL C D
Sbjct:   192 LM-YRSDP-----YHPDHFN-----CSHCGKELTADARELK---GELYCLPCHD 231

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0051896 "regulation of protein kinase B signaling cascade" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4F0	DAR1_ARATH	No assigned EC number	0.8489	0.9553	0.5804	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000309 annotation not avaliable (558 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam12315	212	pfam12315, DUF3633, Protein of unknown function (D	1e-128
cd09396	53	cd09396, LIM_DA1, The Lim domain of DA1	2e-16
cd08368	53	cd08368, LIM, LIM is a small protein-protein inter	1e-08
cd09332	52	cd09332, LIM2_PINCH, The second LIM domain of prot	3e-07
pfam00412	58	pfam00412, LIM, LIM domain	3e-06
cd09401	53	cd09401, LIM_TLP_like, The LIM domains of thymus L	3e-06
smart00132	54	smart00132, LIM, Zinc-binding domain present in Li	4e-05
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	1e-04
cd09397	58	cd09397, LIM1_UF1, LIM domain in proteins of unkno	2e-04
cd09454	52	cd09454, LIM1_ZASP_Cypher, The first LIM domain of	0.001
cd09430	52	cd09430, LIM5_LIMPETin, The fifth LIM domain of pr	0.001
cd09338	53	cd09338, LIM3_Paxillin_like, The third LIM domain	0.002
cd09345	54	cd09345, LIM2_FHL, The second LIM domain of Four a	0.002
cd09340	58	cd09340, LIM1_Testin_like, The first LIM domain of	0.003
cd09410	53	cd09410, LIM3_Leupaxin, The third LIM domain of Le	0.003

>gnl|CDD|204878 pfam12315, DUF3633, Protein of unknown function (DUF3633)

 Score =  364 bits (936), Expect = e-128
 Identities = 147/200 (73%), Positives = 168/200 (84%), Gaps = 8/200 (4%)

Query: 134 GLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAG 193
           GLNMK+EQ++P+LLVERQALN+A EGEK GHHH PETRGLCLSEEQ VT+VL+RPRIG G
Sbjct: 1   GLNMKIEQEIPMLLVERQALNKAREGEKIGHHHTPETRGLCLSEEQIVTSVLKRPRIGPG 60

Query: 194 YRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEE 253
            RLI M TEP +L RRCEVTAIL+LYGLPRLLTGSILAHEMMHAWLRL GY NL P+VEE
Sbjct: 61  NRLIGMGTEPQKLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLNGYRNLNPEVEE 120

Query: 254 GICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGKRSDFEKDLGKF 313
           GICQVL HMWLESE Y        +SSS+S+SSSSSS S +++SSKKG++SDFEK LG+F
Sbjct: 121 GICQVLGHMWLESETY--------ASSSASSSSSSSSSSPAASSSKKGEKSDFEKKLGEF 172

Query: 314 FKHQIESDTSSAYGDGLGKV 333
           FKHQIE+D+S  YGDG    
Sbjct: 173 FKHQIETDSSPVYGDGFRAA 192

This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with pfam00412. Length = 212

>gnl|CDD|188782 cd09396, LIM_DA1, The Lim domain of DA1

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          + A WHPECFRCH+C  PI + EFS+SGN PYHK CY
Sbjct: 17 LGAVWHPECFRCHACRKPIAEHEFSVSGNDPYHKSCY 53

The Lim domain of DA1: DA1 contains one copy of LIM domain and a domain of unknown function. DA1 is predicted as an ubiquitin receptor, which sets final seed and organ size by restricting the period of cell proliferation. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein. Length = 53

>gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          +   WHPECF+C  C  P+    F     +PY + CY
Sbjct: 17 LGKKWHPECFKCSVCGKPLGGDSFYEKDGKPYCEKCY 53

LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53

>gnl|CDD|188718 cd09332, LIM2_PINCH, The second LIM domain of protein PINCH

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHC 36
          M   WHP+CFRC  CN  + D+ F  +  R     C
Sbjct: 16 MNNNWHPDCFRCEICNKELADIGFVKNAGRALCHPC 51

The second LIM domain of protein PINCH: PINCH plays a pivotal role in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|215907 pfam00412, LIM, LIM domain

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          WHPECFRC  C  P+   +F     + Y KH Y
Sbjct: 22 WHPECFRCAVCGKPLGPGDFFEKDGKLYCKHDY 54

This family represents two copies of the LIM structural domain. Length = 58

>gnl|CDD|188785 cd09401, LIM_TLP_like, The LIM domains of thymus LIM protein (TLP)

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          WH  C RC  C   +T  + S    +PY   CY
Sbjct: 21 WHKPCLRCEKCKKTLTPGQHSEHEGKPYCNKCY 53

The LIM domain of thymus LIM protein (TLP) like proteins: This family includes the LIM domains of TLP and CRIP (Cysteine-Rich Intestinal Protein). TLP is the distant member of the CRP family of proteins. TLP has two isomers (TLP-A and TLP-B) and sharing approximately 30% with each of the three other CRPs. Like CRP1, CRP2 and CRP3/MLP, TLP has two LIM domains, connected by a flexible linker region. Unlike the CRPs, TLP lacks the nuclear targeting signal (K/R-K/R-Y-G-P-K) and is localized solely in the cytoplasm. TLP is specifically expressed in the thymus in a subset of cortical epithelial cells. TLP has a role in development of normal thymus and in controlling the development and differentiation of thymic epithelial cells. CRIP is a short LIM protein with only one LIM domain. CRIP gene is developmentally regulated and can be induced by glucocorticoid hormones during the first three postnatal weeks. The domain shows close sequence homology to LIM domain of thymus LIM protein. However, unlike the TLP proteins which have two LIM domains, the members of this family have only one LIM domain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHC 36
          WHPECF+C +C  P++   F     + Y K C
Sbjct: 23 WHPECFKCATCGKPLSGDTFFEKDGKLYCKDC 54

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 266 SEIYSGSGSDVASSSSSSASSSSSSPSSSSTSSKKGKRSDFEKDLGKFFKHQIESDTSSA 325
           S   + S S   SS+  S+SSSSS  SSS T       SDF  DL K  +  +       
Sbjct: 28  SSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTESESDFWGDLQKALQSML-----GT 82

Query: 326 YGDG 329
            GDG
Sbjct: 83  PGDG 86

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|188783 cd09397, LIM1_UF1, LIM domain in proteins of unknown function

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 5  WHPECFRCHSCNLPITD-VEFSMSGNRPYHKHCY 37
          WH ECF C +C  P    V   +  ++PY +  Y
Sbjct: 24 WHRECFVCTTCGCPFQFSVPCYVLDDKPYCQQHY 57

The first Lim domain of a LIM domain containing protein: The functions of the proteins are unknown. The members of this family contain two copies of LIM domain. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein. Length = 58

>gnl|CDD|188838 cd09454, LIM1_ZASP_Cypher, The first LIM domain of ZASP/Cypher family

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          WHPE F CH C+  + DV F    N  Y ++CY
Sbjct: 20 WHPEEFTCHYCHTSLADVSFVEEQNNVYCENCY 52

The first LIM domain of ZASP/Cypher family: ZASP was identified in human heart and skeletal muscle and Cypher is a mice ortholog of ZASP. ZASP/Cyppher contains three LIM domains at the C-terminus and a PDZ domain at N-terminus. ZASP/Cypher is required for maintenance of Z-line structure during muscle contraction, but not required for Z-line assembly. In heart, Cypher/ZASP plays a structural role through its interaction with cytoskeletal Z-line proteins. In addition, there is increasing evidence that Cypher/ZASP also performs signaling functions. Studies reveal that Cypher/ZASP interacts with and directs PKC to the Z-line, where PKC phosphorylates downstream signaling targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188814 cd09430, LIM5_LIMPETin, The fifth LIM domain of protein LIMPETin

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          WH ECF C +C+  +    F+    +PY   C+
Sbjct: 20 WHRECFTCTNCSKSLAGQRFTSRDEKPYCADCF 52

The fifth LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 52

>gnl|CDD|188724 cd09338, LIM3_Paxillin_like, The third LIM domain of the paxillin like protein family

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPY---HKH 35
          +   WHPECF C  C+ P  +  F      PY   H H
Sbjct: 16 LNTQWHPECFVCRECHKPFINGSFFEHEGLPYCETHYH 53

The third LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

>gnl|CDD|188731 cd09345, LIM2_FHL, The second LIM domain of Four and a half LIM domains protein (FHL)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 4  FWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCY 37
          FWH +CF C  C  PI    F    ++ Y   CY
Sbjct: 21 FWHEKCFTCSECKKPIGTKSFIPKDDKIYCVPCY 54

The second LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54

>gnl|CDD|188726 cd09340, LIM1_Testin_like, The first LIM domain of Testin-like family

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 2  EAFWHPECFRCHSCNLPITD 21
          +A WHP CF C +CN  + D
Sbjct: 23 DACWHPGCFVCETCNELLVD 42

The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 58

>gnl|CDD|188794 cd09410, LIM3_Leupaxin, The third LIM domain of Leupaxin

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 14/32 (43%), Positives = 14/32 (43%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPY 32
              WHPECF C  C  P TD  F     RP 
Sbjct: 16 ANGVWHPECFVCSDCLKPFTDGSFFELDGRPL 47

The third LIM domain of Leupaxin: Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. Leupaxin belongs to the paxillin focal adhesion protein family. Same as other members of the family, it has four leucine-rich LD-motifs in the N-terminus and four LIM domains in the C-terminus. It may function in cell type-specific signaling by associating with interaction partners PYK2, FAK, PEP and p95PKL. When expressed in human leukocytic cells, leupaxin significantly suppressed integrin-mediated cell adhesion to fibronectin and the tyrosine phosphorylation of paxillin. These findings indicate that leupaxin may negatively regulate the functions of paxillin during integrin signaling. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PF12315	212	DUF3633: Protein of unknown function (DUF3633); In	100.0
KOG2272	332	consensus Focal adhesion protein PINCH-1, contains	99.91
KOG1703	479	consensus Adaptor protein Enigma and related PDZ-L	99.89
KOG1701	468	consensus Focal adhesion adaptor protein Paxillin	99.82
KOG1701	468	consensus Focal adhesion adaptor protein Paxillin	99.72
KOG4577	383	consensus Transcription factor LIM3, contains LIM	99.59
KOG1044	670	consensus Actin-binding LIM Zn-finger protein Lima	99.54
KOG1703	479	consensus Adaptor protein Enigma and related PDZ-L	99.53
KOG2272	332	consensus Focal adhesion protein PINCH-1, contains	99.5
KOG1044	670	consensus Actin-binding LIM Zn-finger protein Lima	99.4
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	98.87
PF00412	58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	98.75
KOG1700	200	consensus Regulatory protein MLP and related LIM p	98.47
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	97.54
KOG4577	383	consensus Transcription factor LIM3, contains LIM	97.52
smart00132	39	LIM Zinc-binding domain present in Lin-11, Isl-1,	96.95
KOG0490	235	consensus Transcription factor, contains HOX domai	96.48
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	95.65
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	94.66
KOG1700	200	consensus Regulatory protein MLP and related LIM p	94.41
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	86.47
PF14891	174	Peptidase_M91: Effector protein	82.1
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	81.37
PF01433	390	Peptidase_M1: Peptidase family M1 This is family M	81.36

>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length

Probab=100.00  E-value=1.8e-77  Score=536.27  Aligned_cols=194  Identities=78%  Similarity=1.208  Sum_probs=182.6

Q ss_pred             hccceeccccccchhcHHHHHHhhcCcCCCCCCCCCcCCccccccceecceecccccCCCcccccccccccccccceeEE
Q 019777          134 GLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVT  213 (336)
Q Consensus       134 glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~~~~rGl~~~E~~~~~s~~~~~r~~~~~~~~~~~t~~~~~~~~~~v~  213 (336)
                      ||||||++++||+||+++|||+|.++|++|++|.++|||||++|+|+++++.|+|++++++++++|+|+|++++|+|+||
T Consensus         1 ~lnmki~q~~PllLVe~~aLN~a~~~Ek~~~~~~~~tRGLclseeq~v~sv~~~p~~~~~~~~~~~~~e~~~~~~~~eV~   80 (212)
T PF12315_consen    1 GLNMKIEQEIPLLLVERQALNEAEEGEKIGHHHMPETRGLCLSEEQTVTSVLRRPRMGPGNQLIDMSTEPQRLTRGCEVT   80 (212)
T ss_pred             CCCCcccCCCCeEEecHHHHHHHHhhccCCCCCCeeeeeeeeeeeEEEEEEEecCCcCCCCccceeeecceeeccceeEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCChhhhhhhHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHhhhcccccCCCCCccCCCCCCCCCCCCCCCC
Q 019777          214 AILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHMWLESEIYSGSGSDVASSSSSSASSSSSSPSS  293 (336)
Q Consensus       214 ~ilvl~glp~~~~~~~lahe~~ha~l~~~g~~~l~~~veeg~cq~~a~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (336)
                      +|+|||||||++||||||||+|||||||+||++|+|+||||||||||||||+++++++++        +++++|+|++++
T Consensus        81 ~Ilvl~GLPrll~gsiLAHE~mHa~Lrl~g~~~L~~~vEEGiCqvla~~wL~~~~~~~~~--------~~~~~s~~~s~~  152 (212)
T PF12315_consen   81 AILVLYGLPRLLTGSILAHELMHAWLRLNGFPNLSPEVEEGICQVLAYLWLESELASGSG--------SSSSSSSSSSSS  152 (212)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhhhhcccC--------CcccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999998765        111234455566


Q ss_pred             CCCCCCCCCCchHHHHHHHHHhhhhhcCCCCCCchhhhhhhc
Q 019777          294 SSTSSKKGKRSDFEKDLGKFFKHQIESDTSSAYGDGLGKVVR  335 (336)
Q Consensus       294 ~~~~~~~~~~~~~~~~l~~~~~~~i~~d~s~~yg~gfr~~~~  335 (336)
                      ++++||||++++||+||++||+||||+|+|||||||||+|++
T Consensus       153 ~~~~skkg~~s~~E~kL~~f~~~qIe~D~SpvYGdGFRaa~~  194 (212)
T PF12315_consen  153 ASSSSKKGAKSQFEKKLGEFFKHQIETDTSPVYGDGFRAANE  194 (212)
T ss_pred             cccccccccccHHHHHHHHHHHHHhccCCCcccchHHHHHHH
Confidence            677889999999999999999999999999999999999985

The family is found in association with PF00412 from PFAM.

>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]

Probab=99.91  E-value=7.5e-26  Score=207.08  Aligned_cols=153  Identities=27%  Similarity=0.498  Sum_probs=127.2

Q ss_pred             CCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeec---------------
Q 019777            2 EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHP---------------   66 (336)
Q Consensus         2 g~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~---------------   66 (336)
                      |..||.+||+|+.|-.|+.+..|++.+|+.||+.||+.+|+|.|..|+++|.+.   +|.++..+               
T Consensus        33 ge~wH~~CFvCAQCf~pf~~g~~~efEgRkYCEhDF~~LfaPcC~kC~EFiiGr---VikamnnSwHp~CF~Cd~Cn~~L  109 (332)
T KOG2272|consen   33 GELWHEQCFVCAQCFRPFPDGIFYEFEGRKYCEHDFHVLFAPCCGKCGEFIIGR---VIKAMNNSWHPACFRCDLCNKHL  109 (332)
T ss_pred             chhhHHHHHHHHHhcCcCCCceeEEecCcccccccchhhhchhhcccccchhhH---HHHhhccccCcccchhHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999874   33333222               


Q ss_pred             --------------------------------------------ccccccCCCCcCCCCCccCCCCccCCCCCceEEcCC
Q 019777           67 --------------------------------------------FWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDD  102 (336)
Q Consensus        67 --------------------------------------------fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~d  102 (336)
                                                                  |-+..|     |+..|+|..|++.|..+.+-+   .
T Consensus       110 ad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~KCh~~iD~~~l~fr~d~y-----H~yHFkCt~C~keL~sdaRev---k  181 (332)
T KOG2272|consen  110 ADQGFYRNQGRALCRECNQKEKAKGRGRYVCQKCHAHIDEQPLTFRGDPY-----HPYHFKCTTCGKELTSDAREV---K  181 (332)
T ss_pred             hhhhhHhhcchHHhhhhhhhhcccccceeehhhhhhhcccccccccCCCC-----Cccceecccccccccchhhhh---c
Confidence                                                        111223     555588999999998776643   7


Q ss_pred             CceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhc----------CcCCCCCCCCCcCC
Q 019777          103 GRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAME----------GEKNGHHHLPETRG  172 (336)
Q Consensus       103 G~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~----------~e~~g~~h~~~~rG  172 (336)
                      |.+||+.|+++  |..++|.+|.+||.+           ++      +.|||++|+          +||.||.|| |++|
T Consensus       182 ~eLyClrChD~--mgipiCgaC~rpIee-----------rv------i~amgKhWHveHFvCa~CekPFlGHrHY-EkkG  241 (332)
T KOG2272|consen  182 GELYCLRCHDK--MGIPICGACRRPIEE-----------RV------IFAMGKHWHVEHFVCAKCEKPFLGHRHY-EKKG  241 (332)
T ss_pred             cceeccccccc--cCCcccccccCchHH-----------HH------HHHhccccchhheeehhcCCcccchhhh-hhcC
Confidence            89999999999  899999999988863           43      789999995          468999998 9999


Q ss_pred             ccccccceeccee
Q 019777          173 LCLSEEQTVTTVL  185 (336)
Q Consensus       173 l~~~E~~~~~s~~  185 (336)
                      |+|||+||+..+.
T Consensus       242 laYCe~h~~qLfG  254 (332)
T KOG2272|consen  242 LAYCETHYHQLFG  254 (332)
T ss_pred             chhHHHHHHHHhh
Confidence            9999999986654

>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]

Probab=99.89  E-value=8.5e-24  Score=214.90  Aligned_cols=302  Identities=43%  Similarity=0.675  Sum_probs=247.4

Q ss_pred             CeeecCCCCCCCCCceeecCCcccccccccc-ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCC
Q 019777            9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKE-QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSC   87 (336)
Q Consensus         9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~-~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C   87 (336)
                      ||.|..|..++          ..+...+|.. ...+.+.++...|.....+.+.++...+|.|+||+.|.+.....|..|
T Consensus       151 ~~~~~~~~~p~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~tp~~~~~  220 (479)
T KOG1703|consen  151 CFQCKRCSEPL----------SGFPKPSYHESGRSKNEDVEEASSPSSRAGLILSRSHPFWKQKYCPSHENDGTPKCCSC  220 (479)
T ss_pred             hhhhccccccc----------CCccccccccccccccccccccccccccccccccccchhhhhcccccccCCCCCCcccc
Confidence            55666666665          2334455554 366789999999987766778889999999999999999999999999


Q ss_pred             CccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcCCCCCCC
Q 019777           88 ERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHL  167 (336)
Q Consensus        88 ~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~  167 (336)
                      .+..+.+..+..+.+++.+|.+|....+++.+++++....+..++.+..+++++..+++++...+++++-...+....|.
T Consensus       221 ~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (479)
T KOG1703|consen  221 ERLEPLDTRYVELADGRALCLECMGSASMDSPECQPLVSAPRPASEGLHMKVEKELPLLLVESEALKKLREEEKPAEYHN  300 (479)
T ss_pred             cccccccccceecccchhhhhhccCCcccCCCccCcceecccccccccccccccccchhhcccccccccccccccccccc
Confidence            99886688888998889999999987789999999999999999999999999999999999999999988777665554


Q ss_pred             CCcCCccccccceecceecccccCCCcccccccccccccccceeEEEEEEecCCChhhhhhhHHHHHHHHHHHhcCCCCC
Q 019777          168 PETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNL  247 (336)
Q Consensus       168 ~~~rGl~~~E~~~~~s~~~~~r~~~~~~~~~~~t~~~~~~~~~~v~~ilvl~glp~~~~~~~lahe~~ha~l~~~g~~~l  247 (336)
                       .++++|..+.++++++         ..+.++.++..+....|++++|+++++.|+...|.+++||+||+|++.++++.+
T Consensus       301 -~~~p~c~~c~~~i~~~---------~~i~~~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~  370 (479)
T KOG1703|consen  301 -VTRPLCLSCNQKIRSV---------KVIVALGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCL  370 (479)
T ss_pred             -cccccccccccCcccc---------eeEeeccccccccceeeccccccccCCCccccCCCccHHHHHHHhhCccccccC
Confidence             8899999999998553         345678888888889999999999999999999999999999999999999999


Q ss_pred             CcchhhhHHHHHHHHhhhcccccCCC-CCccCCCCCCCCCCCCCCCCCCCCCCCCC--CchHHHHHHHHHhhhhhcCCCC
Q 019777          248 RPDVEEGICQVLAHMWLESEIYSGSG-SDVASSSSSSASSSSSSPSSSSTSSKKGK--RSDFEKDLGKFFKHQIESDTSS  324 (336)
Q Consensus       248 ~~~veeg~cq~~a~~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~~d~s~  324 (336)
                      .+.+||+||++ +.+|++..-+-..- .....    .+....+..+......++..  +..++++.++|+.++|+.|.++
T Consensus       371 ~~i~~~~v~a~-~~~wH~~cf~C~~C~~~~~~----~~~~~~~~~pyce~~~~~~~~~~~~~~~~p~~~~~~~ie~~~~~  445 (479)
T KOG1703|consen  371 LPILEEGVCAL-GRLWHPECFVCADCGKPLKN----SSFFESDGEPYCEDHYKKLFTTKCDYCKKPVEFGSRQIEADGSP  445 (479)
T ss_pred             CchHHhHhhhc-cCeechhceeeecccCCCCC----CcccccCCccchhhhHhhhccccchhccchhHhhhhHhhccCcc
Confidence            99999999999 99999998765422 11110    00111222222233334443  7788999999999999999999


Q ss_pred             CCchhhhhhhc
Q 019777          325 AYGDGLGKVVR  335 (336)
Q Consensus       325 ~yg~gfr~~~~  335 (336)
                      .||||||.++.
T Consensus       446 ~h~~~F~c~~c  456 (479)
T KOG1703|consen  446 FHGDCFRCANC  456 (479)
T ss_pred             ccccceehhhh
Confidence            99999998864

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-22  Score=196.19  Aligned_cols=145  Identities=20%  Similarity=0.407  Sum_probs=124.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      |++.||.+||+|..|++.|.++.||..|+++||+.||.+ ...||.+|+++|.+.   ++.+.++.|          |++
T Consensus       294 m~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~-tlekC~~Cg~~I~d~---iLrA~Gkay----------Hp~  359 (468)
T KOG1701|consen  294 MDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQD-TLEKCNKCGEPIMDR---ILRALGKAY----------HPG  359 (468)
T ss_pred             hhhhhcccceehHhhhhhhccccccccCCcccchHHHHH-HHHHHhhhhhHHHHH---HHHhccccc----------CCC
Confidence            789999999999999999999999999999999999986 678999999999975   789999998          999


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCc
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE  160 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e  160 (336)
                      ||+|..|.+.|. |..|....++++||..||.+  .++++|..|.+||+        |-+++-  ..|.+.||++.+|.+
T Consensus       360 CF~Cv~C~r~ld-gipFtvd~~n~v~Cv~dfh~--kfAPrCs~C~~PI~--------P~~G~~--etvRvvamdr~fHv~  426 (468)
T KOG1701|consen  360 CFTCVVCARCLD-GIPFTVDSQNNVYCVPDFHK--KFAPRCSVCGNPIL--------PRDGKD--ETVRVVAMDRDFHVN  426 (468)
T ss_pred             ceEEEEeccccC-CccccccCCCceeeehhhhh--hcCcchhhccCCcc--------CCCCCc--ceEEEEEcccccccc
Confidence            999999999996 89998888999999999999  89999999999994        554332  235677888888765


Q ss_pred             CCCCCCCCCcCCcccc
Q 019777          161 KNGHHHLPETRGLCLS  176 (336)
Q Consensus       161 ~~g~~h~~~~rGl~~~  176 (336)
                      .-.    -|--|+-|+
T Consensus       427 CY~----CEDCg~~LS  438 (468)
T KOG1701|consen  427 CYK----CEDCGLLLS  438 (468)
T ss_pred             cee----hhhcCcccc
Confidence            421    155566666

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]

Probab=99.72  E-value=3.5e-18  Score=166.67  Aligned_cols=103  Identities=24%  Similarity=0.527  Sum_probs=91.0

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceee-cCCccccccccccccCCcCcccCCcccCCCCc----eEEEeeecccccccCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG----LIEYRAHPFWLQKYCPS   75 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~-~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g----~i~~~~~~fW~qkyCp~   75 (336)
                      ||+.||+.||+|..|++.|++..|.+ .++++||.+||+++|+|+|++|+++|...++.    .|.++++.|        
T Consensus       352 ~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~f--------  423 (468)
T KOG1701|consen  352 LGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDF--------  423 (468)
T ss_pred             cccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEccccc--------
Confidence            68999999999999999999999986 78999999999999999999999999986542    245666666        


Q ss_pred             CcCCCCCccCCCCccCC---CCCceEEcCCCceeccchhhhc
Q 019777           76 HERDGTPRCCSCERMEP---RDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        76 H~H~~CF~C~~C~~~l~---~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                        |.+|++|..|+..|.   .+...|.+ ||.++|+.|+.+.
T Consensus       424 --Hv~CY~CEDCg~~LS~e~e~qgCyPl-d~HllCk~Ch~~R  462 (468)
T KOG1701|consen  424 --HVNCYKCEDCGLLLSSEEEGQGCYPL-DGHLLCKTCHLKR  462 (468)
T ss_pred             --cccceehhhcCccccccCCCCcceec-cCceeechhhhhh
Confidence              999999999999986   36678899 9999999998764

>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]

Probab=99.59  E-value=4.8e-17  Score=151.76  Aligned_cols=101  Identities=22%  Similarity=0.564  Sum_probs=89.8

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceE-EEeeecccccccCCCCcCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI-EYRAHPFWLQKYCPSHERD   79 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i-~~~~~~fW~qkyCp~H~H~   79 (336)
                      |++.||..|++|+.|+.+|++..| .++|.+||+++|.++|+.||..|...|++.  ++| .+.+..|          |.
T Consensus        52 l~R~wHs~CLkCs~C~~qL~drCF-sR~~s~yCkedFfKrfGTKCsaC~~GIpPt--qVVRkAqd~VY----------Hl  118 (383)
T KOG4577|consen   52 LDRHWHSSCLKCSDCHDQLADRCF-SREGSVYCKEDFFKRFGTKCSACQEGIPPT--QVVRKAQDFVY----------HL  118 (383)
T ss_pred             HhhhhhhhhcchhhhhhHHHHHHh-hcCCceeehHHHHHHhCCcchhhcCCCChH--HHHHHhhccee----------eh
Confidence            578999999999999999998655 589999999999999999999999999985  233 3445555          99


Q ss_pred             CCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           80 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        80 ~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .||.|..|.+.|..|+.||..+|+++.|++.|+++
T Consensus       119 ~CF~C~iC~R~L~TGdEFYLmeD~rLvCK~DYE~A  153 (383)
T KOG4577|consen  119 HCFACFICKRQLATGDEFYLMEDARLVCKDDYETA  153 (383)
T ss_pred             hhhhhHhhhcccccCCeeEEeccceeehhhhHHHH
Confidence            99999999999999999999999999999999985

>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]

Probab=99.54  E-value=1.8e-15  Score=152.19  Aligned_cols=192  Identities=15%  Similarity=0.260  Sum_probs=148.0

Q ss_pred             CCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCC
Q 019777            2 EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGT   81 (336)
Q Consensus         2 g~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~C   81 (336)
                      ++.||..||.|..|++.|+...|+.+++.        +++++  ..|.+.|.++   +|.+.++.|          |+.|
T Consensus        35 d~~fhi~cf~c~~cg~~la~~gff~k~~~--------~~ygt--~~c~~~~~ge---vvsa~gkty----------h~~c   91 (670)
T KOG1044|consen   35 DNHFHINCFQCKKCGRNLAEGGFFTKPEN--------RLYGT--DDCRAFVEGE---VVSTLGKTY----------HPKC   91 (670)
T ss_pred             ccccceeeeeccccCCCcccccceecccc--------eeecc--cchhhhccce---eEeccccee----------cccc
Confidence            67899999999999999999999998775        45555  7899999986   789999988          9999


Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhhccc------CCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHH
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM------DTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNE  155 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~------~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~  155 (336)
                      |.|+.|..+++.|++- ........|..|...+-.      +...|.+|...|..          ++.      +-||++
T Consensus        92 f~cs~ck~pf~~g~~v-t~~gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~----------gq~------llald~  154 (670)
T KOG1044|consen   92 FSCSTCKSPFKSGDKV-TFSGKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKN----------GQA------LLALDK  154 (670)
T ss_pred             ceecccCCCCCCCCee-eecchhhhhhhhcCcccCCcccccCCccccchhhhhhc----------cce------eeeecc
Confidence            9999999999987774 554666889999766522      45679999887752          343      338888


Q ss_pred             hhcCc--------CCCCCCCCCcCCccccccceecceecccccCCC-----ccccccccccccccc-ceeEEEEEEecCC
Q 019777          156 AMEGE--------KNGHHHLPETRGLCLSEEQTVTTVLRRPRIGAG-----YRLIDMITEPYRLIR-RCEVTAILILYGL  221 (336)
Q Consensus       156 a~~~e--------~~g~~h~~~~rGl~~~E~~~~~s~~~~~r~~~~-----~~~~~~~t~~~~~~~-~~~v~~ilvl~gl  221 (336)
                      +||.-        ...++.|+.++|++|||.+|+.-+.  .+.-..     .++++.....++.+. ||....-+.--|-
T Consensus       155 qwhv~cfkc~~c~~vL~gey~skdg~pyce~dy~~~fg--vkc~~c~~fisgkvLqag~kh~HPtCARCsRCgqmF~eGE  232 (670)
T KOG1044|consen  155 QWHVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQAKFG--VKCEECEKFISGKVLQAGDKHFHPTCARCSRCGQMFGEGE  232 (670)
T ss_pred             ceeeeeeehhhhcccccceeeccCCCcchhhhhhhhcC--eehHHhhhhhhhhhhhccCcccCcchhhhhhhccccccch
Confidence            88642        3445668899999999999986654  111111     223455556677776 7888899999999


Q ss_pred             ChhhhhhhHHHHHH
Q 019777          222 PRLLTGSILAHEMM  235 (336)
Q Consensus       222 p~~~~~~~lahe~~  235 (336)
                      -+.|.||.+||.-.
T Consensus       233 EMYlQGs~iWHP~C  246 (670)
T KOG1044|consen  233 EMYLQGSEIWHPDC  246 (670)
T ss_pred             heeeccccccCCcc
Confidence            99999999999754

>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]

Probab=99.53  E-value=3.3e-15  Score=152.24  Aligned_cols=153  Identities=16%  Similarity=0.272  Sum_probs=119.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      ||+.||+.+|.|..|...|....|...+|++||..||.+.+.|+|..|.++|.++   .|.+.++.          ||+.
T Consensus       322 ~~~~~h~~~~~c~~~~~~~~~~~~~~~~g~~~c~~~~~~~~~p~C~~C~~~i~~~---~v~a~~~~----------wH~~  388 (479)
T KOG1703|consen  322 LGKEWHPEHFSCEVCAIVILDGGPRELDGKILCHECFHAPFRPNCKRCLLPILEE---GVCALGRL----------WHPE  388 (479)
T ss_pred             ccccccccceeeccccccccCCCccccCCCccHHHHHHHhhCccccccCCchHHh---HhhhccCe----------echh
Confidence            6889999999999999999998998999999999999999999999999999987   46666543          4999


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHH---HHhhccceeccccccchhcHHHHHHhh
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQE---FYEGLNMKVEQQVPLLLVERQALNEAM  157 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~---f~~glg~~i~~~~p~~lV~~~ALn~a~  157 (336)
                      ||.|..|++.+. +..|+.. ||.+||..|+..  .+...|..|.+||..   +.+++|.++.+..-    .....++++
T Consensus       389 cf~C~~C~~~~~-~~~~~~~-~~~pyce~~~~~--~~~~~~~~~~~p~~~~~~~ie~~~~~~h~~~F----~c~~c~~~l  460 (479)
T KOG1703|consen  389 CFVCADCGKPLK-NSSFFES-DGEPYCEDHYKK--LFTTKCDYCKKPVEFGSRQIEADGSPFHGDCF----RCANCMKKL  460 (479)
T ss_pred             ceeeecccCCCC-CCccccc-CCccchhhhHhh--hccccchhccchhHhhhhHhhccCccccccce----ehhhhhccc
Confidence            999999999996 6666655 999999999998  566789889888763   44556666654431    122222222


Q ss_pred             cCcCCCCCCCCCcCCccccccc
Q 019777          158 EGEKNGHHHLPETRGLCLSEEQ  179 (336)
Q Consensus       158 ~~e~~g~~h~~~~rGl~~~E~~  179 (336)
                           ..+-+.++.+.+||..+
T Consensus       461 -----~~~~~~~~~~~p~c~~~  477 (479)
T KOG1703|consen  461 -----TKKTFFETLDKPLCQKH  477 (479)
T ss_pred             -----cCCceeecCCccccccC
Confidence                 22235678888888654

>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]

Probab=99.50  E-value=1.8e-15  Score=139.18  Aligned_cols=99  Identities=20%  Similarity=0.507  Sum_probs=92.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      ||+.||.++|+|+.|.+|+-+...|++.|.+||+++|.++|+..|..|+..|.+.   ++.+.++.|          -+.
T Consensus       213 mgKhWHveHFvCa~CekPFlGHrHYEkkGlaYCe~h~~qLfG~~CF~C~~~i~G~---vv~al~Kaw----------Cv~  279 (332)
T KOG2272|consen  213 MGKHWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYHQLFGNLCFICNRVIGGD---VVSALNKAW----------CVE  279 (332)
T ss_pred             hccccchhheeehhcCCcccchhhhhhcCchhHHHHHHHHhhhhheecCCccCcc---HHHHhhhhh----------ccc
Confidence            7999999999999999999999999999999999999999999999999999985   788888884          677


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      ||.|+.|++.|....+|+++ |-+|.|+.||++
T Consensus       280 cf~Cs~Cdkkl~~K~Kf~E~-DmkP~CKkCy~r  311 (332)
T KOG2272|consen  280 CFSCSTCDKKLTQKNKFYEF-DMKPVCKKCYDR  311 (332)
T ss_pred             cccccccccccccccceeee-ccchHHHHHHhh
Confidence            79999999999988899999 899999999986

>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]

Probab=99.40  E-value=5.5e-14  Score=141.62  Aligned_cols=97  Identities=23%  Similarity=0.602  Sum_probs=85.7

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      |++.||..||+|..|...|.+ +|..+||.|||..||++.|+.+|..|.++|.+.   ++.+.++.|          |+.
T Consensus       152 ld~qwhv~cfkc~~c~~vL~g-ey~skdg~pyce~dy~~~fgvkc~~c~~fisgk---vLqag~kh~----------HPt  217 (670)
T KOG1044|consen  152 LDKQWHVSCFKCKSCSAVLNG-EYMSKDGVPYCEKDYQAKFGVKCEECEKFISGK---VLQAGDKHF----------HPT  217 (670)
T ss_pred             eccceeeeeeehhhhcccccc-eeeccCCCcchhhhhhhhcCeehHHhhhhhhhh---hhhccCccc----------Ccc
Confidence            689999999999999999976 899999999999999999999999999999985   788888644          999


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhh
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLD  112 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~  112 (336)
                      |-+|..|+.+|..|+..|.. ...++-..|-.
T Consensus       218 CARCsRCgqmF~eGEEMYlQ-Gs~iWHP~C~q  248 (670)
T KOG1044|consen  218 CARCSRCGQMFGEGEEMYLQ-GSEIWHPDCKQ  248 (670)
T ss_pred             hhhhhhhccccccchheeec-cccccCCcccc
Confidence            99999999999877776644 67777777764

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.87  E-value=5.2e-10  Score=81.21  Aligned_cols=41  Identities=44%  Similarity=1.189  Sum_probs=38.1

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCcccccccccccc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH   41 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~   41 (336)
                      +|+.||++||+|..|+++|.+..|+..+|++||+.||.++|
T Consensus        18 ~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f   58 (58)
T PF00412_consen   18 MGKFWHPECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF   58 (58)
T ss_dssp             TTEEEETTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred             CCcEEEccccccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence            47899999999999999999988999999999999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.75  E-value=9.8e-09  Score=74.48  Aligned_cols=56  Identities=20%  Similarity=0.468  Sum_probs=45.7

Q ss_pred             CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           45 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        45 C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |..|+++|.+.. .++.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..|+.+
T Consensus         1 C~~C~~~I~~~~-~~~~~~~~~~----------H~~Cf~C~~C~~~l~-~~~~~~~-~~~~~C~~c~~~   56 (58)
T PF00412_consen    1 CARCGKPIYGTE-IVIKAMGKFW----------HPECFKCSKCGKPLN-DGDFYEK-DGKPYCKDCYQK   56 (58)
T ss_dssp             BTTTSSBESSSS-EEEEETTEEE----------ETTTSBETTTTCBTT-TSSEEEE-TTEEEEHHHHHH
T ss_pred             CCCCCCCccCcE-EEEEeCCcEE----------EccccccCCCCCccC-CCeeEeE-CCEEECHHHHhh
Confidence            789999999864 2335777764          999999999999997 4447666 899999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....

>KOG1700 consensus Regulatory protein MLP and related LIM proteins [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=3.3e-08  Score=90.24  Aligned_cols=98  Identities=27%  Similarity=0.554  Sum_probs=76.5

Q ss_pred             CCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCC--------------------------------------
Q 019777            2 EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP--------------------------------------   43 (336)
Q Consensus         2 g~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~p--------------------------------------   43 (336)
                      |..||+.||+|..|.+.|....+..+++.+||+.||...++|                                      
T Consensus        27 g~~~hk~c~~c~~~~k~l~~~~~~~~e~~~yc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  106 (200)
T KOG1700|consen   27 GVDFHKECFKCEKCKKTLTLSGYSEHEGVPYCKNCHVAQFGPKGGGFGKGFQKAGGLGKDGKSLNESKPNQSAKFQVFAG  106 (200)
T ss_pred             CcchhhhHHhccccccccccccccccccccccccchHhhhCcccccccccccccCCCCcccccccccccccchhHHhhhc
Confidence            678999999999999999998999999999999987554332                                      


Q ss_pred             ---cCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           44 ---KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        44 ---kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                         .|..|++.+.+.+  .+...+..|          |..||+|..|+..|. ...|... +|.+||...+..
T Consensus       107 ~~~~c~~c~k~vy~~E--k~~~~~~~~----------hk~cfrc~~~~~~ls-~~~~~~~-~g~l~~~~~~~~  165 (200)
T KOG1700|consen  107 EKEKCARCQKTVYPLE--KVTGNGLEF----------HKSCFRCTHCGKKLS-PKNYAAL-EGVLYCKHHFAQ  165 (200)
T ss_pred             cccccccccceeeehH--HHhhhhhhh----------hhhheeecccccccC-Ccchhhc-CCccccchhhhe
Confidence               3888888776542  344555554          999999999999996 5566554 778888665544

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=97.54  E-value=6.4e-05  Score=49.37  Aligned_cols=38  Identities=16%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             cCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCC
Q 019777           44 KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP   92 (336)
Q Consensus        44 kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~   92 (336)
                      +|..|+++|.+.. ..+.+.+..|          |..||+|..|+++|.
T Consensus         1 ~C~~C~~~i~~~~-~~~~~~~~~~----------H~~Cf~C~~C~~~L~   38 (39)
T smart00132        1 KCAGCGKPIRGGE-LVLRALGKVW----------HPECFKCSKCGKPLG   38 (39)
T ss_pred             CccccCCcccCCc-EEEEeCCccc----------cccCCCCcccCCcCc
Confidence            5899999998852 3566666653          999999999999884

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]

Probab=97.52  E-value=2.8e-06  Score=80.30  Aligned_cols=76  Identities=17%  Similarity=0.324  Sum_probs=59.5

Q ss_pred             ccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcc
Q 019777           36 CYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI  115 (336)
Q Consensus        36 CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v  115 (336)
                      ++...--|+|+.|.+.|.+.-  ++.+.+.          |||..|.+|..|+.+|  +++.+.. +|..||++.|-+  
T Consensus        27 df~~~eip~CagC~q~IlDrF--ilKvl~R----------~wHs~CLkCs~C~~qL--~drCFsR-~~s~yCkedFfK--   89 (383)
T KOG4577|consen   27 DFSNVEIPICAGCDQHILDRF--ILKVLDR----------HWHSSCLKCSDCHDQL--ADRCFSR-EGSVYCKEDFFK--   89 (383)
T ss_pred             cccccccccccchHHHHHHHH--HHHHHhh----------hhhhhhcchhhhhhHH--HHHHhhc-CCceeehHHHHH--
Confidence            344445789999999999863  3334443          6699999999999999  5666665 899999999998  


Q ss_pred             cCCCCCCchhhHH
Q 019777          116 MDTHECQPLYLEI  128 (336)
Q Consensus       116 ~~~~~C~~c~~~I  128 (336)
                      .+..+|.+|..-|
T Consensus        90 rfGTKCsaC~~GI  102 (383)
T KOG4577|consen   90 RFGTKCSACQEGI  102 (383)
T ss_pred             HhCCcchhhcCCC
Confidence            6788899887655

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3

Probab=96.95  E-value=0.00035  Score=45.80  Aligned_cols=20  Identities=45%  Similarity=1.411  Sum_probs=18.2

Q ss_pred             CCCcccCCCeeecCCCCCCC
Q 019777            1 MEAFWHPECFRCHSCNLPIT   20 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~   20 (336)
                      +++.||++||+|..|+++|.
T Consensus        19 ~~~~~H~~Cf~C~~C~~~L~   38 (39)
T smart00132       19 LGKVWHPECFKCSKCGKPLG   38 (39)
T ss_pred             CCccccccCCCCcccCCcCc
Confidence            47899999999999999985

Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.

>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]

Probab=96.48  E-value=0.00032  Score=64.13  Aligned_cols=99  Identities=19%  Similarity=0.387  Sum_probs=73.5

Q ss_pred             CCcccCCCeeecCCCCCCC--CCceeecCCcccccccccc--ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCc
Q 019777            2 EAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKE--QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHE   77 (336)
Q Consensus         2 g~~wH~~CF~C~~C~~~L~--~~~F~~~dg~~yC~~CY~~--~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~   77 (336)
                      +..||..|..|..|..++.  ...|.. +|..||..+|..  .+..+|..|...|...+     .....|  ++.     
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~d~~~~~~~~~rr~rt~~~~~ql~-----~ler~f--~~~-----   82 (235)
T KOG0490|consen   16 DRYWHASCLKCAECDNPLGVGDTCFSK-DGSIYCKRDYQREFKFSKRCARCKFTISQLD-----ELERAF--EKV-----   82 (235)
T ss_pred             cHHHHHHHHhhhhhcchhccCCCcccC-CCcccccccchhhhhccccccCCCCCcCHHH-----HHHHhh--cCC-----
Confidence            4679999999999999998  666666 999999999998  88899999999985432     222222  111     


Q ss_pred             CCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           78 RDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        78 H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |-.||.|..|...+..+..+......+.+|...+..
T Consensus        83 h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~  118 (235)
T KOG0490|consen   83 HLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKE  118 (235)
T ss_pred             CcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhh
Confidence            778999999998876566665443446666666544

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=95.65  E-value=0.022  Score=46.06  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             CCChhhhhhhHHHHHHHHHHHhcC--CCCCCcchhhhHHHHHHHH
Q 019777          220 GLPRLLTGSILAHEMMHAWLRLKG--YPNLRPDVEEGICQVLAHM  262 (336)
Q Consensus       220 glp~~~~~~~lahe~~ha~l~~~g--~~~l~~~veeg~cq~~a~~  262 (336)
                      +-+.-....+|+||+.|+|+....  ...++..+.||+++.++..
T Consensus        19 ~~~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~   63 (128)
T PF13485_consen   19 GSDEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR   63 (128)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC
Confidence            444444459999999999988752  3588899999999999965

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=94.66  E-value=0.0068  Score=55.32  Aligned_cols=40  Identities=25%  Similarity=0.832  Sum_probs=35.3

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ   40 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~   40 (336)
                      |++.||..||+|..|+.+|.-..+--.|.+|||...|.+.
T Consensus        23 ldk~whk~cfkce~c~mtlnmKnyKgy~kkpycn~hYpkq   62 (264)
T KOG1702|consen   23 LDKVWHKQCFKCEVCGMTLNMKNYKGYDKKPYCNPHYPKQ   62 (264)
T ss_pred             HHHHHHHHhheeeeccCChhhhhccccccCCCcCcccccc
Confidence            4678999999999999999888887788999999999753

>KOG1700 consensus Regulatory protein MLP and related LIM proteins [Signal transduction mechanisms; Cytoskeleton]

Probab=94.41  E-value=0.016  Score=53.01  Aligned_cols=40  Identities=23%  Similarity=0.561  Sum_probs=34.4

Q ss_pred             CCcccCCCeeecCCCCCCCCCceeecCCcccccccccccc
Q 019777            2 EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH   41 (336)
Q Consensus         2 g~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~   41 (336)
                      +..||..||+|..|+..|+...+...++.+||+..+.+++
T Consensus       128 ~~~~hk~cfrc~~~~~~ls~~~~~~~~g~l~~~~~~~~~~  167 (200)
T KOG1700|consen  128 GLEFHKSCFRCTHCGKKLSPKNYAALEGVLYCKHHFAQLF  167 (200)
T ss_pred             hhhhhhhheeecccccccCCcchhhcCCccccchhhheee
Confidence            5679999999999999999999999899999877655543

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=86.47  E-value=0.63  Score=42.78  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             hhhhhhHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHH
Q 019777          224 LLTGSILAHEMMHAWLRLKGYPNLRPDVEEGICQVLAHM  262 (336)
Q Consensus       224 ~~~~~~lahe~~ha~l~~~g~~~l~~~veeg~cq~~a~~  262 (336)
                      --.-.+|-|||+|+|+.- |...-|.-+-|||...+-+.
T Consensus        94 ~Ei~Gvl~HE~~H~~Q~~-~~~~~P~~liEGIADyVRl~  131 (205)
T PF04450_consen   94 DEIIGVLYHEMVHCWQWD-GRGTAPGGLIEGIADYVRLK  131 (205)
T ss_pred             HHHHHHHHHHHHHHhhcC-CCCCCChhheecHHHHHHHH
Confidence            445689999999999987 45578899999999988655

>PF14891 Peptidase_M91: Effector protein

Probab=82.10  E-value=0.9  Score=40.35  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=17.2

Q ss_pred             hhhhhHHHHHHHHHHHhcCC
Q 019777          225 LTGSILAHEMMHAWLRLKGY  244 (336)
Q Consensus       225 ~~~~~lahe~~ha~l~~~g~  244 (336)
                      .--.+|+|||.|||=.++|-
T Consensus       102 ~p~v~L~HEL~HA~~~~~Gt  121 (174)
T PF14891_consen  102 PPFVVLYHELIHAYDYMNGT  121 (174)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
Confidence            34589999999999999985

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=81.37  E-value=2.1  Score=38.74  Aligned_cols=45  Identities=20%  Similarity=0.171  Sum_probs=34.6

Q ss_pred             hhhhhhHHHHHHHHHHHh------cCCCCCCcchhhhHHHHHHHHhhhccc
Q 019777          224 LLTGSILAHEMMHAWLRL------KGYPNLRPDVEEGICQVLAHMWLESEI  268 (336)
Q Consensus       224 ~~~~~~lahe~~ha~l~~------~g~~~l~~~veeg~cq~~a~~wl~~~~  268 (336)
                      -..-+++|||+-|++-.-      .+...|+..|=||+.+..+..-+....
T Consensus        63 ~~l~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~  113 (195)
T PF10026_consen   63 EELPALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY  113 (195)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence            456789999999997433      244567789999999999988766644

>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification

Probab=81.36  E-value=0.74  Score=45.11  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             hhhhHHHHHHHHHHHhc-CCCCC-CcchhhhHHHHHHHHhhhccc
Q 019777          226 TGSILAHEMMHAWLRLK-GYPNL-RPDVEEGICQVLAHMWLESEI  268 (336)
Q Consensus       226 ~~~~lahe~~ha~l~~~-g~~~l-~~~veeg~cq~~a~~wl~~~~  268 (336)
                      ...++|||++|-|+--- ....- +..+-||+++.++++|++.-.
T Consensus       295 ~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~  339 (390)
T PF01433_consen  295 IASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLF  339 (390)
T ss_dssp             HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhcc
Confidence            45789999999996421 11111 256999999999999999865

; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
3mmk_A	169	The Structural Basis For Partial Redundancy In A Cl		4e-04

>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of Transcription Factors, The Lim-Homeodomain Proteins, In Neural Cell Type Specification Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           ++  WH  C +C  C + + D  FS +G+  Y K  + ++   KC  CQ  IP      +
Sbjct: 25  LDRHWHSSCLKCADCQMQLADRCFSRAGS-VYCKEDFFKRFGTKCTACQQGIPPTQ---V 80
Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114
             +A  F    +C +        C  C R      ++  ++DGR +C E  ++A
Sbjct: 81  VRKAQDFVYHLHCFA--------CIICNRQLATGDEFYLMEDGRLVCKEDYETA 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	1e-15
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	2e-15
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	8e-15
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	7e-14
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	1e-13
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	4e-13
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	5e-13
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	4e-05
2cuq_A	80	Four and A half LIM domains 3; structural genomics	2e-12
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	2e-12
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	3e-12
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	1e-11
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	2e-11
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	3e-11
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	3e-11
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	4e-11
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	4e-11
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	9e-08
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	4e-11
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	6e-11
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	7e-11
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	8e-11
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	1e-10
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	2e-10
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	3e-10
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	4e-10
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	5e-10
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	1e-09
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	3e-09
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	1e-09
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	2e-09
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	4e-09
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	9e-09
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	9e-09
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	3e-08
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	2e-06
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	4e-08
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	6e-08
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	9e-08
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	3e-07
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	4e-07
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	7e-07
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	1e-05
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2cor_A	79	Pinch protein; LIM domain, particularly interestin	3e-04

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           +  WH +CF C +C+  +    F+   ++ Y   CYK       
Sbjct: 23 QDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           E  WH ECF C +C   ++   F+   +  Y  +C+ + +    
Sbjct: 23 REQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 67.5 bits (165), Expect = 8e-15
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           E  WH +CF C  C+L +    F    +      C K+   P  
Sbjct: 27 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 64.7 bits (158), Expect = 7e-14
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
            + WH  CF CH C  PI    F    N+ +   CY++QH    
Sbjct: 25 KGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 11/45 (24%), Positives = 14/45 (31%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
              WH  CF C  C  P+    F       Y   CY+ +     
Sbjct: 25 GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 48
              +H  CF C  C   +     ++     Y K CY +++ PK    
Sbjct: 26 DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGY 73

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 11/106 (10%)

Query: 5   WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRA 64
           WH + F C  C+  +    + M  ++P  K CY + H   C  C N I       + Y  
Sbjct: 26  WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQR-VTYNN 84

Query: 65  HPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110
             +        H       C  C +      +     +G   C   
Sbjct: 85  FSW--------HASTECFLCSCCSK--CLIGQKFMPVEGMVFCSVE 120

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 5   WHP--ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40
           WH   ECF C  C+  +   +F       +     K++
Sbjct: 87  WHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           +  WH EC  C  C  P+   +F+     PY   C+ E      
Sbjct: 33 RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 10/46 (21%), Positives = 15/46 (32%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46
           +  +H  CFRC  C   + D  F+   +      CY         
Sbjct: 35 EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          M   WHPECFRC  C   + D+ F  +  R   + C+  +     
Sbjct: 23 MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 17/55 (30%), Positives = 21/55 (38%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 55
             FWH  CFRC  C  P+ +  F    N+     C   +  PKC  C   I   
Sbjct: 25 KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG 79

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          ++  WH  CF+C +C++ +T  E+      PY +  Y  Q     
Sbjct: 34 LDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           + + HPECF C  CNL +    +       Y +   + +     
Sbjct: 43 RDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 39
              WH  CF C  C++ + +  F     + Y   C K+
Sbjct: 38 EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          M+  WHPECF C  C    +   F     RP+ +  Y  +     
Sbjct: 33 MDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           ++  WH +C +C  C++P+ +  FS      Y K  + ++   KC  CQ  IP     + 
Sbjct: 25  LDRHWHSKCLKCSDCHVPLAERCFSRGE-SVYCKDDFFKRFGTKCAACQLGIPPTQV-VR 82

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110
             +        Y           C  C+R      ++  ++D R +C   
Sbjct: 83  RAQDF-----VYHLHCF-----ACVVCKRQLATGDEFYLMEDSRLVCKAD 122

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 5/77 (6%)

Query: 1   MEAFWHPECFRCHSCNLPITDVE--FSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 58
            +  +H  CF C  C   +   +  + M  +R   K  Y+                    
Sbjct: 85  QDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTP-- 142

Query: 59  LIEYRAHPFWLQKYCPS 75
            +   +          +
Sbjct: 143 -MVAASPERHDGGLQAN 158

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 4  FWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 58
           +H  CFRC  CN  ++   ++    R Y K  + +    K +  + F    S+G
Sbjct: 37 VFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPSSG 91

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72

 Score = 56.7 bits (137), Expect = 6e-11
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 48
          ++  +H  CF C +C   +    F     R Y + CY           
Sbjct: 25 LDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 60
           ++  WH +C +C  C++P+ +  FS      Y K  + ++   KC  CQ  IP      +
Sbjct: 79  LDRHWHSKCLKCSDCHVPLAERCFSRGE-SVYCKDDFFKRFGTKCAACQLGIP---PTQV 134

Query: 61  EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114
             RA       Y           C  C+R      ++  ++D R +C    ++A
Sbjct: 135 VRRAQD---FVYHLHCF-----ACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          WH +CF C +C   I    F   G   Y   C++ +     
Sbjct: 39 WHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          +   WHPE F C  C   +  + F       Y + CY++      
Sbjct: 43 LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 5   WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRA 64
           +H  CF C  C   +     ++ G+  Y K CY +++ PK         T S    E   
Sbjct: 30  FHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLG 89

Query: 65  HPFWLQKYCP---------SHERDGTPRCCSCER 89
             +   +            + +  G+  C  C +
Sbjct: 90  IKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQ 123

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 58.1 bits (140), Expect = 3e-10
 Identities = 13/48 (27%), Positives = 16/48 (33%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 48
               WH  CFRC  C   +     +      Y K CY +   PK    
Sbjct: 134 AGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 181

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKC 45
          M   +HP CF C  C+  +  + F++   ++ +    +  +     
Sbjct: 33 MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 39
           ++ WH ECF C  C++ +    F       + + C   
Sbjct: 27 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQH--HPKCDVCQNFIPTNS 56
           M+++WH  C +C SC   + D+  S          ++ Y         C  C   IP   
Sbjct: 24  MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP--- 80

Query: 57  AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 116
           A  +  RA       Y           C +C        ++    +G   C     +A++
Sbjct: 81  ASELVMRAQG---NVYHLKCF-----TCSTCRNRLVPGDRFH-YINGSLFCEHDRPTALI 131

Query: 117 DTH 119
           + H
Sbjct: 132 NGH 134

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 10/91 (10%), Positives = 21/91 (23%), Gaps = 4/91 (4%)

Query: 1   MEAFWHPECFRCHSCNLPITDVE-FSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGL 59
               +H +CF C +C   +   + F       + +H                  +  +G 
Sbjct: 89  QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGG 148

Query: 60  -IEYRAHPFWLQKYCPSHERDGTPRCCSCER 89
            +     P          + D          
Sbjct: 149 DVMVVGEP--TLMGGEFGDEDERLITRLENT 177

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 5  WHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
          +H +CF C  C     +  F     R Y +H ++    P  
Sbjct: 35 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 10/43 (23%), Positives = 12/43 (27%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP 43
          M   WH E F C  C  P             Y +  Y +    
Sbjct: 23 MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40
              +H +CF C  C     +  F     R Y +H ++  
Sbjct: 31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 50.9 bits (122), Expect = 9e-09
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 45
           +   HPEC+ C  C   +         ++ Y +   +E+     
Sbjct: 33 RDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 4  FWHPECFRCHSCNLPITDVEFSMSGNRPY-HKHCYKEQHHPKC 45
           WH  C +C  C   +T    +    +PY +  CY     PK 
Sbjct: 22 DWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKG 64

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPK--CDVCQNFIPTNS 56
           ++ +WH +C  C  C   + +V         R   +  Y         C  C   I    
Sbjct: 21  IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR--- 77

Query: 57  AGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110
           A  +  R      + Y          +C +C++      +YL L +   +C + 
Sbjct: 78  AYEMTMRVKD---KVYHLECF-----KCAACQKHFCVGDRYL-LINSDIVCEQD 122

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 5   WHPECFRCHSCNLPITDVE-FSMSGNRPYHKHCYKEQHHPK 44
           +H ECF+C +C       + + +  +    +    E     
Sbjct: 90  YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 1  MEAFWHPECFRCHSCNLPITDVE--FSMSGNRPYHKHCYKEQHHPKC 45
           E  +HPECF C SC + I D +    +     Y   C+ E      
Sbjct: 33 GEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 4  FWHPECFRCHSCNLPITDVEFSMSGNRPY-HKHCYKEQHHPKC 45
           WH  C +C  C+  +T    +    +P+ HK CY        
Sbjct: 31 DWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81

 Score = 47.9 bits (114), Expect = 9e-08
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITD-VEFSMSGNRPYHKHCYKE 39
          +   +HP+CF C  C LP       + +G     + C   
Sbjct: 33 LGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKCDVCQ 49
          ++ +WH +C  C  C   + +V         R   +  Y         +  
Sbjct: 22 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKCDVCQNFIPTNS 56
          M+++WH  C +C SC   + D+  S          ++ Y                 + 
Sbjct: 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 73

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITDV-EFSMSGNRPYHKHCYK 38
           E  +HP C  C  C     +  E  + G+  +H  C +
Sbjct: 23 GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQ 61

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 1   MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKE 39
           M+++WH  C +C SC   + D+  S          ++ Y  
Sbjct: 80  MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 40/324 (12%), Positives = 87/324 (26%), Gaps = 107/324 (33%)

Query: 5   WHPECFRC--HSCNLPIT----DVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 58
            + + +     SC + +T     V   +S     H       HH          P     
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH---ISLDHHSM-----TLTPDEVKS 305

Query: 59  LIEYRAHPFWLQKYC---PSHERDGTPRCCSC--ERM-EPRDT----KYLSLD---DGRK 105
           L+       +L       P       PR  S   E + +   T    K+++ D      +
Sbjct: 306 LLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 106 LCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHH 165
             L  L+ A     E + ++  +  F    +      +P +L+    +   +        
Sbjct: 361 SSLNVLEPA-----EYRKMFDRLSVFPPSAH------IPTILLSL--IWFDVIKS----- 402

Query: 166 HLPETRGLCLSEEQTVTTVLRRPRIGAGYRLIDMITEPYRLIRRCEVTAILILYGLPRLL 225
                      +   V   L +                Y L+ +    + + +  +   L
Sbjct: 403 -----------DVMVVVNKLHK----------------YSLVEKQPKESTISIPSIYLEL 435

Query: 226 TGSILAHEMMHAWLR-----LKGYPN--LRPDVEEG-ICQVLA-HM-------------- 262
              +     +H  +       K + +  L P   +      +  H+              
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 263 ------WLESEI-YSGSGSDVASS 279
                 +LE +I +  +  + + S
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGS 519

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 1  MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40
              +HP+ F C +C   +T     + G   Y   C+ + 
Sbjct: 33 KNDPYHPDHFNCANCGKELTADARELKG-ELYCLPCHDKM 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.86
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.85
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.85
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.85
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	99.84
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.82
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.73
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.57
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.56
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.56
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.56
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	99.54
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.54
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.53
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.5
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.44
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	99.43
2xqn_T	126	Testin, TESS; metal-binding protein, cytoskeleton,	99.33
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.28
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.24
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.22
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	99.22
1x68_A	76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.21
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.18
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.18
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.17
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.16
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.16
2dar_A	90	PDZ and LIM domain protein 5; enigma homolog prote	99.16
2ehe_A	82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.15
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.14
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.14
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.14
1x4k_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.13
2cur_A	69	Skeletal muscle LIM-protein 1; four and A half LIM	99.13
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.13
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	99.13
2d8z_A	70	Four and A half LIM domains 2; skeletal muscle LIM	99.12
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.12
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.11
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.1
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	99.09
2cuq_A	80	Four and A half LIM domains 3; structural genomics	99.08
2xjy_A	131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.08
1x3h_A	80	Leupaxin; paxillin family, protein-protein interac	99.08
1wyh_A	72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.07
2dlo_A	81	Thyroid receptor-interacting protein 6; LIM domain	99.07
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.06
2cu8_A	76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.06
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	99.06
1x4l_A	72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.06
1iml_A	76	CRIP, cysteine rich intestinal protein; metal-bind	99.03
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	99.02
1x63_A	82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.02
1g47_A	77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.01
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.01
2cor_A	79	Pinch protein; LIM domain, particularly interestin	99.01
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.01
1nyp_A	66	Pinch protein; LIM domain, protein recognition, ce	99.01
1a7i_A	81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.01
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	99.0
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	98.99
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	98.98
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	98.98
2d8x_A	70	Protein pinch; LIM domain, pinch protein, structur	98.97
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	98.97
1x61_A	72	Thyroid receptor interacting protein 6; LIM domain	98.96
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	98.94
1wig_A	73	KIAA1808 protein; LIM domain, zinc finger, metal-b	98.94
2dj7_A	80	Actin-binding LIM protein 3; LIM domain, Zn bindin	98.93
2cor_A	79	Pinch protein; LIM domain, particularly interestin	98.91
2co8_A	82	NEDD9 interacting protein with calponin homology a	98.91
1x64_A	89	Alpha-actinin-2 associated LIM protein; LIM domain	98.9
2d8y_A	91	Eplin protein; LIM domain, epithelial protein LOST	98.88
1x62_A	79	C-terminal LIM domain protein 1; PDZ and LIM domai	98.86
3f6q_B	72	LIM and senescent cell antigen-like-containing dom	98.85
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	98.85
1x6a_A	81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	98.82
2l4z_A	123	DNA endonuclease RBBP8, LIM domain transcription L	98.79
2rgt_A	169	Fusion of LIM/homeobox protein LHX3, linker, INSU	98.79
2co8_A	82	NEDD9 interacting protein with calponin homology a	98.77
2egq_A	77	FHL1 protein; LIM domain, four and A half LIM doma	98.77
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	98.76
1v6g_A	81	Actin binding LIM protein 2; LIM domain, zinc bind	98.46
1zfo_A	31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	89.68
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	86.97

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.86  E-value=1.5e-22  Score=169.60  Aligned_cols=102  Identities=15%  Similarity=0.418  Sum_probs=91.3

Q ss_pred             CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH   76 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H   76 (336)
                      +|+.||++||+|..|+++|.+  ..|+.+||++||+.||.++|++  +|..|+++|.+.+ .++.+.++.|         
T Consensus        21 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e-~~~~a~~~~~---------   90 (131)
T 2xjy_A           21 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE-MTMRVKDKVY---------   90 (131)
T ss_dssp             TTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-EEEEETTEEE---------
T ss_pred             CCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-eeEeeCCceE---------
Confidence            588999999999999999963  6899999999999999999999  9999999998752 4678888874         


Q ss_pred             cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                       |+.||+|..|+++|+.+..|+.. ||++||..|+.++
T Consensus        91 -H~~CF~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~  126 (131)
T 2xjy_A           91 -HLECFKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEW  126 (131)
T ss_dssp             -EGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHH
T ss_pred             -CccCcccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHH
Confidence             99999999999999668888876 8999999999874

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=99.85  E-value=1.2e-22  Score=178.07  Aligned_cols=104  Identities=22%  Similarity=0.558  Sum_probs=91.2

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      +|+.||++||+|..|+++|.+..| .+||++||+.||.++|+++|.+|+++|.+.+ .++.+.+..|          |..
T Consensus        25 ~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~~a~~~~~----------H~~   92 (169)
T 2rgt_A           25 LDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVRRAQDFVY----------HLH   92 (169)
T ss_dssp             SSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEEEETTEEE----------EGG
T ss_pred             CCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEEEcCCceE----------eeC
Confidence            588999999999999999998765 7999999999999999999999999999753 3456777664          999


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhhhccc
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM  116 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~  116 (336)
                      ||+|..|+++|..+..|+...||++||..|+.++..
T Consensus        93 CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~  128 (169)
T 2rgt_A           93 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ  128 (169)
T ss_dssp             GCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred             CCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence            999999999997677887777999999999988643

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.85  E-value=2.8e-22  Score=167.05  Aligned_cols=100  Identities=21%  Similarity=0.522  Sum_probs=89.9

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC--
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--   78 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H--   78 (336)
                      +|+.||++||+|..|+++|.+..|+++||++||+.||.++|+++|.+|+++|.+. +.+|++.++.|          |  
T Consensus        22 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~   90 (126)
T 2xqn_T           22 ENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE-VQRVTYNNFSW----------HAS   90 (126)
T ss_dssp             TTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTT-SCEEEETTEEE----------ESS
T ss_pred             CCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcC-ceEEECCCCEe----------eCC
Confidence            5889999999999999999998999999999999999999999999999999974 24788888874          8  


Q ss_pred             CCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           79 DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        79 ~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      +.||+|..|+++|. +..|+.. ||++||..++.+
T Consensus        91 ~~CF~C~~C~~~l~-~~~f~~~-~~~~yC~~~~~~  123 (126)
T 2xqn_T           91 TECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKK  123 (126)
T ss_dssp             TTTSBCTTTCCBCT-TSEEEEE-TTEEESSHHHHH
T ss_pred             CCCcCcCCCCCccC-CCeeEeE-CCEEcchHHhhh
Confidence            99999999999996 7888765 999999966655

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.85  E-value=5.3e-22  Score=175.84  Aligned_cols=102  Identities=23%  Similarity=0.579  Sum_probs=89.8

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      +|+.||++||+|..|+++|.+..| .+||++||+.||.++|+++|..|+++|.+.+ .++.+.+..|          |+.
T Consensus        79 ~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~v~~a~~~~~----------H~~  146 (182)
T 2jtn_A           79 LDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVRRAQDFVY----------HLH  146 (182)
T ss_dssp             TTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-CCCEETTEEC----------CTT
T ss_pred             cCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-eEEecCCCCE----------EeC
Confidence            588999999999999999998765 7899999999999999999999999998753 3456777653          999


Q ss_pred             CCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      ||+|..|+++|..+..|+...||++||..||.++
T Consensus       147 CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~  180 (182)
T 2jtn_A          147 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETA  180 (182)
T ss_dssp             TCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred             CCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence            9999999999976778877779999999999874

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=99.84  E-value=9.1e-22  Score=175.76  Aligned_cols=111  Identities=20%  Similarity=0.424  Sum_probs=97.3

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCc------------------------------------
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK------------------------------------   44 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pk------------------------------------   44 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+                                    
T Consensus        26 ~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (192)
T 1b8t_A           26 EGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNA  105 (192)
T ss_dssp             TTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred             CCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCc
Confidence            58899999999999999999989999999999999999999886                                    


Q ss_pred             ------------CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhh
Q 019777           45 ------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLD  112 (336)
Q Consensus        45 ------------C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~  112 (336)
                                  |..|+++|.+..  .|.+.++.|          |..||+|..|+++|. +..|+.. ||++||..|+.
T Consensus       106 ~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~  171 (192)
T 1b8t_A          106 SRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGKSW----------HKSCFRCAKCGKSLE-STTLADK-DGEIYCKGCYA  171 (192)
T ss_dssp             CCCCCCCCCCEECTTTSCEECSSS--CEEETTEEE----------CTTTCBCTTTCCBCC-SSSEEEE-TTEEEEHHHHH
T ss_pred             cccccccCCCCcCCCCCCEecCcE--EEecCCCcc----------chhcCCccccCCCCC-CCccccc-CCEEeCHHHHH
Confidence                        778999998643  577888764          999999999999996 5678755 99999999999


Q ss_pred             hcccCCCCCCchhhH
Q 019777          113 SAIMDTHECQPLYLE  127 (336)
Q Consensus       113 ~~v~~~~~C~~c~~~  127 (336)
                      +  .+.++|..|.++
T Consensus       172 ~--~f~~kc~~C~~~  184 (192)
T 1b8t_A          172 K--NFGPKGFGFGQG  184 (192)
T ss_dssp             H--HTCCCCCCCCCC
T ss_pred             H--hcCCcCCCCCCc
Confidence            8  678899888654

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.82  E-value=1.1e-21  Score=174.66  Aligned_cols=102  Identities=18%  Similarity=0.470  Sum_probs=91.1

Q ss_pred             CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH   76 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H   76 (336)
                      +|+.||++||+|..|+++|.+  ..|+.+||++||+.||.++|++  +|..|+++|.+.+ .++.+.++.|         
T Consensus        24 ~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e-~~i~a~~~~~---------   93 (188)
T 1rut_X           24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE-LVMRAQGNVY---------   93 (188)
T ss_dssp             TTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS-EEEEETTEEE---------
T ss_pred             cCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc-EEEEcCCCEE---------
Confidence            578999999999999999985  6899999999999999999999  7999999998752 4678888774         


Q ss_pred             cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                       |+.||+|..|+++|..+..|+.. +|++||..|+.++
T Consensus        94 -H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~c~~~~  129 (188)
T 1rut_X           94 -HLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTA  129 (188)
T ss_dssp             -CGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGCCTT
T ss_pred             -eCCCCeECCCCCCCCCCCeEEEE-CCeEECHHHHHHH
Confidence             99999999999999767788766 8999999999874

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.73  E-value=1.1e-18  Score=139.70  Aligned_cols=77  Identities=26%  Similarity=0.592  Sum_probs=69.9

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG   80 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~   80 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..|+++|.+. +.+|.+.++.|          |+.
T Consensus        25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~   93 (101)
T 2cup_A           25 KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG-DQNVEYKGTVW----------HKD   93 (101)
T ss_dssp             TTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSS-SCEEESSSCEE----------ETT
T ss_pred             CccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccC-CeEEEeCCcch----------HHh
Confidence            5789999999999999999988899999999999999999999999999999853 23788888774          999


Q ss_pred             CCccCCCC
Q 019777           81 TPRCCSCE   88 (336)
Q Consensus        81 CF~C~~C~   88 (336)
                      ||+|..|+
T Consensus        94 CF~C~~C~  101 (101)
T 2cup_A           94 CFSGPSSG  101 (101)
T ss_dssp             TCCCTTCC
T ss_pred             CCCCCCCC
Confidence            99999996

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.57  E-value=2.6e-15  Score=115.14  Aligned_cols=78  Identities=19%  Similarity=0.532  Sum_probs=68.1

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      +|++||++||.++++++|..|+++|.++   .|.+.++.|          |..||+|..|+++|. +..|+.. ||++||
T Consensus         1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC   65 (80)
T 2cuq_A            1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQPW----------HRECLVCTGCQTPLA-GQQFTSR-DEDPYC   65 (80)
T ss_dssp             CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSSEE----------CTTTCBCSSSCCBCT-TCCEEEC-SSSEEE
T ss_pred             CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCchh----------hhhhCCcccCCCcCC-CCeeEeE-CCEEEC
Confidence            5899999999999999999999999875   577777763          999999999999996 6778765 999999


Q ss_pred             cchhhhcccCCCCCC
Q 019777          108 LECLDSAIMDTHECQ  122 (336)
Q Consensus       108 ~~C~~~~v~~~~~C~  122 (336)
                      ..|+.+  .+.+.|.
T Consensus        66 ~~cy~~--~f~~~c~   78 (80)
T 2cuq_A           66 VACFGE--LFASGPS   78 (80)
T ss_dssp             HHHHHH--HTTCSTT
T ss_pred             HHHHHH--HcCCCCC
Confidence            999988  5777775

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=3.2e-15  Score=114.61  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=68.3

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      +|++||++||.++++++|..|+++|.++   .|.+.+..|          |+.||+|..|+++|. +..|+.. ||++||
T Consensus         1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC   65 (80)
T 1x3h_A            1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTVW----------HPECFVCGDCFTSFS-TGSFFEL-DGRPFC   65 (80)
T ss_dssp             CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEEE----------CTTTCBCSSSCCBSC-SSCCEES-SSCEEC
T ss_pred             CCCccchhHHhhhcCCccccCCCeecce---eEEECCCeE----------ecCcCChhhCCCCCC-CCcEEeE-CCEEEC
Confidence            5789999999999999999999999975   688888764          999999999999996 5567765 999999


Q ss_pred             cchhhhcccCCCCCC
Q 019777          108 LECLDSAIMDTHECQ  122 (336)
Q Consensus       108 ~~C~~~~v~~~~~C~  122 (336)
                      ..|+.+  .+.++|.
T Consensus        66 ~~~y~~--~f~~~C~   78 (80)
T 1x3h_A           66 ELHYHH--RRGSGPS   78 (80)
T ss_dssp             HHHHHH--HHSSSCC
T ss_pred             HHHHHH--HcCCCCC
Confidence            999988  5677775

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.56  E-value=1.5e-16  Score=132.26  Aligned_cols=86  Identities=13%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             CCCcccCCCeeecCCCCCCC--CCceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019777            1 MEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH   76 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~--~~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H   76 (336)
                      +|+.||++||+|..|+++|.  +..|+.+||++||+.||.++|++  +|..|+++|.+..   +++.+            
T Consensus        24 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~---~~~~g------------   88 (122)
T 1m3v_A           24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD---VMVVG------------   88 (122)
T ss_dssp             TTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE---SSSSS------------
T ss_pred             CCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh---eEEcC------------
Confidence            57899999999999999997  36799999999999999999999  9999999999742   22222            


Q ss_pred             cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                                 ...| .+++|+.. |+++||..|+.+.
T Consensus        89 -----------~~~l-~g~~f~~~-~~~~yC~~~~~~~  113 (122)
T 1m3v_A           89 -----------EPTL-MGGEFGDE-DERLITRLENTQF  113 (122)
T ss_dssp             -----------SSSC-CSCTTCCT-TCCCCEECTTTTT
T ss_pred             -----------CcCC-CCCccEec-CCEeEccCcchhc
Confidence                       1234 48888765 8999999999874

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.3e-15  Score=116.07  Aligned_cols=80  Identities=26%  Similarity=0.569  Sum_probs=67.7

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      ||+|||++||.++|+++|..|+++|.+. +.++.+.++.|          |+.||+|..|+++|. +..|+.. +|++||
T Consensus         1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~~~~~C   67 (82)
T 2ehe_A            1 GSSGSSGPCYDNTFANTCAECQQLIGHD-SRELFYEDRHF----------HEGCFRCCRCQRSLA-DEPFTCQ-DSELLC   67 (82)
T ss_dssp             CCCCCCCCCCCCCCSCBCTTTCCBCCSS-CCBCCCSSCCC----------BTTTSBCTTTCCBCS-SCCEEEE-TTEEEE
T ss_pred             CCceechhHhCcccCCcCccCCCccccC-cEEEEeCCccc----------cccCCeecCCCCccC-CCccEee-CCEEEC
Confidence            6899999999999999999999999942 23666777653          999999999999996 7778766 999999


Q ss_pred             cchhhhcccCCCCCC
Q 019777          108 LECLDSAIMDTHECQ  122 (336)
Q Consensus       108 ~~C~~~~v~~~~~C~  122 (336)
                      ..|+.+  .+.++|.
T Consensus        68 ~~c~~~--~~~~~C~   80 (82)
T 2ehe_A           68 NDCYCS--AFSSGPS   80 (82)
T ss_dssp             TTTSSC--CGGGSSC
T ss_pred             HHHHhh--hcCCCCC
Confidence            999988  5666775

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=5e-15  Score=112.71  Aligned_cols=73  Identities=21%  Similarity=0.500  Sum_probs=63.7

Q ss_pred             CCccccccccccccCCcCcccCCcccC---CCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCc
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPT---NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR  104 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~---~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~  104 (336)
                      +++|||++||.++++++|..|+++|.+   . ..++.+.++.|          |+.||+|..|+++|. +..|+.. +|+
T Consensus         1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~~~   67 (77)
T 2egq_A            1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG-SSVVAYEGQSW----------HDYCFHCKKCSVNLA-NKRFVFH-QEQ   67 (77)
T ss_dssp             CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC-CCEEEETTEEE----------ETTTCBCSSSCCBCT-TSCCCEE-TTE
T ss_pred             CCCeEchhHhchhhCccCcccCCcccCCCCC-ceeEEECccee----------CcccCEehhcCCCCC-CCccEeE-CCE
Confidence            578999999999999999999999996   2 23788888764          999999999999996 6778765 999


Q ss_pred             eeccchhhh
Q 019777          105 KLCLECLDS  113 (336)
Q Consensus       105 ~yC~~C~~~  113 (336)
                      +||..|+.+
T Consensus        68 ~yC~~cy~~   76 (77)
T 2egq_A           68 VYCPDCAKK   76 (77)
T ss_dssp             ECCHHHHHH
T ss_pred             EEChHHhcc
Confidence            999999875

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.54  E-value=7.7e-15  Score=112.93  Aligned_cols=78  Identities=15%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      ||++||++||. ++.++|..|+++|.+.   +|.+.++.|          |+.||+|..|+++|. +..|+...||++||
T Consensus         2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC   66 (81)
T 2dlo_A            2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKAY----------HPGCFTCVVCHRGLD-GIPFTVDATSQIHC   66 (81)
T ss_dssp             CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEEE----------CTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred             cCCEECHHHhh-cCCCccccCCCeecce---eEEECCccc----------cHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence            68999999999 7999999999999964   688888764          999999999999996 67776544789999


Q ss_pred             cchhhhcccCCCCCC
Q 019777          108 LECLDSAIMDTHECQ  122 (336)
Q Consensus       108 ~~C~~~~v~~~~~C~  122 (336)
                      ..||.+  .+.++|.
T Consensus        67 ~~cy~~--~f~~~C~   79 (81)
T 2dlo_A           67 IEDFHR--KFASGPS   79 (81)
T ss_dssp             HHHHHH--HTTSSSC
T ss_pred             HHHHHH--HhcCcCC
Confidence            999988  6778886

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.53  E-value=5.4e-15  Score=113.71  Aligned_cols=74  Identities=14%  Similarity=0.298  Sum_probs=63.4

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      ++.+||+.||.++|+++|..|+++|.+.   .|.+.++.|          |+.||+|..|+++|..+..|+...+|++||
T Consensus         1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C   67 (81)
T 1x6a_A            1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFKY----------HPECFACMSCKVIIEDGDAYALVQHATLYC   67 (81)
T ss_dssp             CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCCB----------CTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred             CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCcee----------ccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence            4689999999999999999999999954   577777663          999999999999996567775335999999


Q ss_pred             cchhhhc
Q 019777          108 LECLDSA  114 (336)
Q Consensus       108 ~~C~~~~  114 (336)
                      ..|+.++
T Consensus        68 ~~c~~~~   74 (81)
T 1x6a_A           68 GKCHNEV   74 (81)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999873

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.50  E-value=2e-14  Score=110.57  Aligned_cols=80  Identities=16%  Similarity=0.416  Sum_probs=67.0

Q ss_pred             CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019777           28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC  107 (336)
Q Consensus        28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC  107 (336)
                      ++.+||++||.++++++|..|+++|.+.+ .+|.+.++.|          |+.||+|..|+++|. +..|+.. +|++||
T Consensus         1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC   67 (82)
T 1x63_A            1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGTVW----------HKDCFTCSNCKQVIG-TGSFFPK-GEDFYC   67 (82)
T ss_dssp             CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSCEE----------ETTTCCCSSSCCCCT-TSCEEEE-TTEEEE
T ss_pred             CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcccc----------ccccCchhhCCCccC-CCccEee-CCEEEC
Confidence            47899999999999999999999998542 3677888763          999999999999996 5578765 999999


Q ss_pred             cchhhhcccCCCCCC
Q 019777          108 LECLDSAIMDTHECQ  122 (336)
Q Consensus       108 ~~C~~~~v~~~~~C~  122 (336)
                      ..|+.+  .+.++|.
T Consensus        68 ~~cy~~--~f~~~~~   80 (82)
T 1x63_A           68 VTCHET--KFASGPS   80 (82)
T ss_dssp             HHHHHH--HTSCCCS
T ss_pred             HHHHHH--HhCCCCC
Confidence            999988  4555553

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.44  E-value=2.6e-14  Score=117.20  Aligned_cols=82  Identities=11%  Similarity=0.234  Sum_probs=66.8

Q ss_pred             CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC
Q 019777            1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER   78 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H   78 (336)
                      +|+.||++||+|..|+++|.+  ..|+.+||++||+.||.++|+++|..|..   +.   +|                 +
T Consensus        22 ~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~---~~-----------------~   78 (114)
T 1j2o_A           22 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD---VM-----------------V   78 (114)
T ss_dssp             SSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---CC-----------------C
T ss_pred             CchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---ee-----------------E
Confidence            588999999999999999985  68999999999999999999999998862   11   11                 1


Q ss_pred             CCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           79 DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        79 ~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                              |++.+..+++|+.. |+++||..|+.+.
T Consensus        79 --------~~~~~~~g~~f~~~-~~~~~C~~~~~~~  105 (114)
T 1j2o_A           79 --------VGEPTLMGGEFGDE-DERLITRLENTQF  105 (114)
T ss_dssp             --------SSCSSTTSSBCCCS-SSCCCEEEECTTC
T ss_pred             --------cCCccCCCCeeEEc-CCEeecchhhhcc
Confidence                    33444458888655 8999999998874

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.43  E-value=1.5e-13  Score=105.64  Aligned_cols=72  Identities=14%  Similarity=0.329  Sum_probs=60.9

Q ss_pred             CccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc
Q 019777           29 NRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL  108 (336)
Q Consensus        29 g~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~  108 (336)
                      +.+||+.||.++|+++|..|+++|.++   +|.+.++.|          |+.||+|..|+++|.. ..++..+++.+||.
T Consensus         2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~w----------H~~CF~C~~C~~~L~~-~~~~~~~~~~~~C~   67 (81)
T 1v6g_A            2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKTY----------HPDCFVCAVCRLPFPP-GDRVTFNGKECMCQ   67 (81)
T ss_dssp             CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEEE----------CTTTSSCSSSCCCCCS-SSCEEEETTEEEEH
T ss_pred             CCCcchHHHHhHhCCcCccccCEeccc---eEEECCcee----------CccCCccccCCCCCCC-CCEEEeCCCCEECh
Confidence            579999999999999999999999964   688888874          9999999999999964 44556645557999


Q ss_pred             chhhhc
Q 019777          109 ECLDSA  114 (336)
Q Consensus       109 ~C~~~~  114 (336)
                      .|+.++
T Consensus        68 ~C~~~~   73 (81)
T 1v6g_A           68 KCSLPV   73 (81)
T ss_dssp             HHHSCC
T ss_pred             hhhccc
Confidence            999875

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}

Probab=99.33  E-value=6e-14  Score=116.41  Aligned_cols=112  Identities=16%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      +++++|..|+++|.+..  ++.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+  .+.+
T Consensus         1 ~~~~~C~~C~~~I~~~~--~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~cy~~--~~~~   64 (126)
T 2xqn_T            1 SEKPRCAGCDELIFSNE--YTQAENQNW----------HLKHFCCFDCDSILA-GEIYVMV-NDKPVCKPCYVK--NHAV   64 (126)
T ss_dssp             -CCCBBTTTSSBCCSSC--EEEETTEEE----------CGGGSBCTTTCCBCT-TSEEEEE-TTEEEEHHHHHH--HSCC
T ss_pred             CcCCCCccCCCEeCCce--EEeeCCCCc----------cCCCCCcCCCCCCCC-cCEEEeE-CCEEechHHhCc--CcCc
Confidence            36899999999999643  788888874          999999999999996 7788765 999999999998  6889


Q ss_pred             CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhc--CcC---------CCCCCCCCcCCccccccceec
Q 019777          120 ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAME--GEK---------NGHHHLPETRGLCLSEEQTVT  182 (336)
Q Consensus       120 ~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~--~e~---------~g~~h~~~~rGl~~~E~~~~~  182 (336)
                      +|..|.++|..         ....      +.|+++.||  .+-         ..+..+...+|..||+.++..
T Consensus        65 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~  123 (126)
T 2xqn_T           65 VCQGCHNAIDP---------EVQR------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK  123 (126)
T ss_dssp             BCTTTCSBCCT---------TSCE------EEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred             cCcccCCcCCc---------CceE------EECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence            99999887741         0111      336677777  321         123334567888888776653

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.28  E-value=9.5e-13  Score=99.91  Aligned_cols=53  Identities=23%  Similarity=0.511  Sum_probs=49.6

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccc-cccccccCCcCcccCCccc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP   53 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~-~CY~~~~~pkC~~C~~~I~   53 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+ .||.++|+++|..|++.+.
T Consensus        19 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~   72 (76)
T 1iml_A           19 LGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES   72 (76)
T ss_dssp             TTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred             CCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence            5789999999999999999988999999999999 6999999999999997765

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.24  E-value=2.4e-12  Score=97.78  Aligned_cols=49  Identities=18%  Similarity=0.542  Sum_probs=46.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ   49 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~   49 (336)
                      +|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..+.
T Consensus        27 ~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s   75 (76)
T 1x68_A           27 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS   75 (76)
T ss_dssp             TTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred             CCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence            5789999999999999999998999999999999999999999999875

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.22  E-value=1.3e-12  Score=100.41  Aligned_cols=52  Identities=21%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI   52 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I   52 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..|++..
T Consensus        26 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~   77 (81)
T 1a7i_A           26 DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA   77 (81)
T ss_dssp             TTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred             CCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence            5789999999999999999998899999999999999999999999998764

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.22  E-value=1.8e-12  Score=107.46  Aligned_cols=106  Identities=10%  Similarity=0.040  Sum_probs=80.5

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCC-CCCceEEcCCCceeccchhhhcccCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~-~~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++.++|..|+++|.+..  ++.+.++.|          |+.||+|..|+++|. .+..|+.. ||++||..||.+  .+.
T Consensus         3 ~~~~~C~~C~~~I~~~~--~~~a~~~~w----------H~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~--~f~   67 (122)
T 1m3v_A            3 LSWKRCAGCGGKIADRF--LLYAMDSYW----------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR--LFG   67 (122)
T ss_dssp             SCCCCBSSSSSCCCSSC--CEEETTEEE----------CHHHHCCSSSCCCTTTSEECCEEE-TTEEECHHHHHH--HHC
T ss_pred             CCCCCCcccCCEeCCcE--EEEECCcee----------HhhCCCcCCCCCcccccCCeEEEE-CCeeecHHHHHH--HcC
Confidence            57899999999999763  578888763          999999999999995 24568766 999999999998  456


Q ss_pred             C--CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcCCCCCCCCCcCCcccccccee
Q 019777          119 H--ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV  181 (336)
Q Consensus       119 ~--~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~~~~rGl~~~E~~~~  181 (336)
                      +  .|..|.++|..           ..      +.+++    .....+..|...+|.+||..++.
T Consensus        68 ~~~~C~~C~~~I~~-----------~~------~~~~g----~~~l~g~~f~~~~~~~yC~~~~~  111 (122)
T 1m3v_A           68 NSGAGGSGGHMGSG-----------GD------VMVVG----EPTLMGGEFGDEDERLITRLENT  111 (122)
T ss_dssp             CCCSSSCSSCCSCC-----------EE------SSSSS----SSSCCSCTTCCTTCCCCEECTTT
T ss_pred             CCCccccCCCCcCc-----------hh------eEEcC----CcCCCCCccEecCCEeEccCcch
Confidence            6  99999887752           10      01222    12334556789999999988875

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.21  E-value=1.2e-11  Score=93.86  Aligned_cols=71  Identities=20%  Similarity=0.400  Sum_probs=60.3

Q ss_pred             cccCCcCcccCCcccC--CCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhccc
Q 019777           39 EQHHPKCDVCQNFIPT--NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM  116 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~--~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~  116 (336)
                      ++|+++|..|+++|.+  . ..+|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+  .
T Consensus         2 ~~~~~~C~~C~~~I~~~g~-~~~~~a~~~~w----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~cy~~--~   66 (76)
T 1x68_A            2 SSGSSGCVACSKPISGLTG-AKFICFQDSQW----------HSECFNCGKCSVSLV-GKGFLTQ-NKEIFCQKCGSG--M   66 (76)
T ss_dssp             TTCCCCCTTTCCCCCTTTT-CCEEEETTEEE----------EGGGCBCTTTCCBCS-SSCEEEE-TTEEEETTTTCC--C
T ss_pred             CccCCCCccCCCcccCCCC-ceeEEECCccc----------CcccCChhhCCCcCC-CCceEeE-CCEEECHHHhhh--h
Confidence            4689999999999996  2 23788888763          999999999999996 7778765 999999999998  6


Q ss_pred             CCCCCCch
Q 019777          117 DTHECQPL  124 (336)
Q Consensus       117 ~~~~C~~c  124 (336)
                      +.++|.++
T Consensus        67 f~~~C~~~   74 (76)
T 1x68_A           67 DTDISGPS   74 (76)
T ss_dssp             CCCSSSSS
T ss_pred             hCCcCCCC
Confidence            88888865

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.18  E-value=3.9e-12  Score=112.24  Aligned_cols=122  Identities=15%  Similarity=0.203  Sum_probs=87.7

Q ss_pred             CCccccccccc---cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCc
Q 019777           28 GNRPYHKHCYK---EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR  104 (336)
Q Consensus        28 dg~~yC~~CY~---~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~  104 (336)
                      +++.||...+.   ....++|..|+++|.+..  ++.+.++. |         |+.||+|..|+++|. +..| .. ||+
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~-~~~f-~~-~g~  107 (182)
T 2jtn_A           43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDRH-W---------HSKCLKCSDCHVPLA-ERCF-SR-GES  107 (182)
T ss_dssp             SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTEE-E---------CSSTTSCTTTCCCCS-SCCE-EE-TTE
T ss_pred             ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCCe-E---------ccccCccCCCCCccC-CCce-eE-CCE
Confidence            45678887775   556789999999999752  57788876 3         999999999999996 5555 44 999


Q ss_pred             eeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------C-CCCCCCCcCCc
Q 019777          105 KLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------N-GHHHLPETRGL  173 (336)
Q Consensus       105 ~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~-g~~h~~~~rGl  173 (336)
                      +||..||.+  .+.++|..|.++|..          .+.    | +.|+++.||.+.          . |...+...+|.
T Consensus       108 ~yC~~~y~~--~f~~kC~~C~~~I~~----------~~~----v-~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~  170 (182)
T 2jtn_A          108 VYCKDDFFK--RFGTKCAACQLGIPP----------TQV----V-RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSR  170 (182)
T ss_dssp             EECHHHHHH--TTSCCCTTTCCCCCS----------SCC----C-CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSC
T ss_pred             eeecCcccc--ccccccccCCCccCC----------Cce----E-EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCE
Confidence            999999998  688999999877631          010    0 236777776541          1 22223356788


Q ss_pred             ccccccee
Q 019777          174 CLSEEQTV  181 (336)
Q Consensus       174 ~~~E~~~~  181 (336)
                      .||+.+|.
T Consensus       171 ~yC~~cy~  178 (182)
T 2jtn_A          171 LVCKADYE  178 (182)
T ss_dssp             EECHHHHH
T ss_pred             EECHHHHH
Confidence            88877664

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.18  E-value=4.4e-12  Score=94.49  Aligned_cols=47  Identities=23%  Similarity=0.588  Sum_probs=44.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|..
T Consensus        23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~   69 (70)
T 2d8z_A           23 REQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS   69 (70)
T ss_dssp             SSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred             CccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence            57899999999999999999989999999999999999999999963

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.17  E-value=5.3e-12  Score=98.98  Aligned_cols=47  Identities=23%  Similarity=0.549  Sum_probs=44.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus        43 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s   89 (90)
T 2dar_A           43 LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS   89 (90)
T ss_dssp             TTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred             CCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence            57899999999999999999989999999999999999999999963

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.16  E-value=4.8e-12  Score=94.14  Aligned_cols=47  Identities=23%  Similarity=0.610  Sum_probs=44.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+++++++||+.||.++|+++|..
T Consensus        23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g   69 (69)
T 2cur_A           23 QDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG   69 (69)
T ss_dssp             TTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred             CccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence            57899999999999999999889999999999999999999999973

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.16  E-value=7.1e-12  Score=93.78  Aligned_cols=47  Identities=23%  Similarity=0.591  Sum_probs=44.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus        25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~   71 (72)
T 1wyh_A           25 GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS   71 (72)
T ss_dssp             TTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred             CccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence            57899999999999999999989999999999999999999999963

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.16  E-value=4.8e-11  Score=93.50  Aligned_cols=75  Identities=13%  Similarity=0.313  Sum_probs=62.3

Q ss_pred             cccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccch
Q 019777           31 PYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC  110 (336)
Q Consensus        31 ~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C  110 (336)
                      +.+...+...+.++|..|+++|.++   .|.+.++.|          |+.||+|..|+++|. +..|+.. +|++||..|
T Consensus        14 ~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c   78 (90)
T 2dar_A           14 QRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKSW----------HPEEFNCAHCKNTMA-YIGFVEE-KGALYCELC   78 (90)
T ss_dssp             BCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEEE----------CTTTCBCSSSCCBCS-SSCBEES-SSCEECHHH
T ss_pred             hhcccCCCCCCCCCCccCCCEecce---EEEECCccc----------cccCCccCCCCCCCC-CCEeEeE-CCEEECHHH
Confidence            4445557778999999999999764   688888774          999999999999996 6678754 999999999


Q ss_pred             hhhcccCCCCCC
Q 019777          111 LDSAIMDTHECQ  122 (336)
Q Consensus       111 ~~~~v~~~~~C~  122 (336)
                      |.+  .+.++|.
T Consensus        79 y~~--~f~~~c~   88 (90)
T 2dar_A           79 YEK--FFASGPS   88 (90)
T ss_dssp             HHH--HTSCCCC
T ss_pred             HHH--HcCCCCC
Confidence            998  6777775

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=94.25  Aligned_cols=47  Identities=21%  Similarity=0.542  Sum_probs=44.6

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+
T Consensus        35 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~   81 (82)
T 2ehe_A           35 EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS   81 (82)
T ss_dssp             SSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred             CCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence            57899999999999999999989999999999999999999999974

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.14  E-value=1.2e-11  Score=92.82  Aligned_cols=46  Identities=26%  Similarity=0.634  Sum_probs=43.2

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus        27 ~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g   72 (72)
T 1x4l_A           27 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG   72 (72)
T ss_dssp             SSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred             CCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence            5789999999999999999999999999999999999999999863

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.14  E-value=7.2e-12  Score=93.74  Aligned_cols=47  Identities=32%  Similarity=0.726  Sum_probs=44.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|+.
T Consensus        25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~   71 (72)
T 1x4k_A           25 KGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS   71 (72)
T ss_dssp             TTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred             CcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence            57899999999999999999989999999999999999999999973

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.14  E-value=9.2e-12  Score=95.90  Aligned_cols=46  Identities=26%  Similarity=0.687  Sum_probs=42.9

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+ .|+.+|+++||+.||.++|+++|..
T Consensus        34 ~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~   79 (80)
T 2dj7_A           34 LDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS   79 (80)
T ss_dssp             TTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred             CCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence            578999999999999999986 6999999999999999999999974

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.13  E-value=5.5e-11  Score=88.88  Aligned_cols=69  Identities=14%  Similarity=0.456  Sum_probs=57.8

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++|+++|..|+++|.+.+ .+|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+  .+.
T Consensus         2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~   66 (72)
T 1x4k_A            2 SSGSSGCQECKKTIMPGT-RKMEYKGSSW----------HETCFICHRCQQPIG-TKSFIPK-DNQNFCVPCYEK--QHA   66 (72)
T ss_dssp             CSCCCCBSSSCCCCCSSS-CEEEETTEEE----------ETTTTCCSSSCCCCC-SSSEEEE-TTEEEEHHHHHH--HTS
T ss_pred             CccCCCCccCCCcccCCc-eEEEECcCee----------cccCCcccccCCccC-CCccCcc-CCeEECHHHHhH--HhC
Confidence            468999999999999642 3788888764          999999999999996 5678765 999999999988  577


Q ss_pred             CCCC
Q 019777          119 HECQ  122 (336)
Q Consensus       119 ~~C~  122 (336)
                      +.|.
T Consensus        67 ~~C~   70 (72)
T 1x4k_A           67 SGPS   70 (72)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7775

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.13  E-value=4.8e-11  Score=88.67  Aligned_cols=66  Identities=15%  Similarity=0.502  Sum_probs=56.0

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      +++++|..|+++|.++   .|.+.++.|          |..||+|..|+++|. +..|+.. ||++||..||.+  .+.+
T Consensus         3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~~   65 (69)
T 2cur_A            3 SGSSGCVKCNKAITSG---GITYQDQPW----------HADCFVCVTCSKKLA-GQRFTAV-EDQYYCVDCYKN--FVSG   65 (69)
T ss_dssp             CCCCCCSSSCCCCCTT---CEEETTEEE----------CTTTTBCTTTCCBCT-TSCEEEC-SSCEEEHHHHHH--HHTC
T ss_pred             CCcCCCcccCCEeCcc---eEEECcccc----------ccCcCEECCCCCCCC-CCccEeE-CCEEECHHHhHH--HhcC
Confidence            5789999999999865   578888764          999999999999996 7778765 899999999988  5667


Q ss_pred             CCC
Q 019777          120 ECQ  122 (336)
Q Consensus       120 ~C~  122 (336)
                      .|.
T Consensus        66 ~C~   68 (69)
T 2cur_A           66 PSS   68 (69)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            765

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.13  E-value=1.1e-11  Score=93.88  Aligned_cols=47  Identities=19%  Similarity=0.539  Sum_probs=44.1

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccc-cccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~-~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+|+++||+ .||.++|+|+|..
T Consensus        28 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g   75 (76)
T 2cu8_A           28 LGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS   75 (76)
T ss_dssp             TTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred             CCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence            5789999999999999999998899999999999 7999999999963

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=99.13  E-value=4e-11  Score=95.45  Aligned_cols=75  Identities=20%  Similarity=0.487  Sum_probs=63.4

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      ++.++|..|+++|... +.++.+.++.|          |..||+|..|+++|. +..|+.. ||++||..||.+  .+.+
T Consensus         3 ~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~--~~~~   67 (101)
T 2cup_A            3 SGSSGCVECRKPIGAD-SKEVHYKNRFW----------HDTCFRCAKCLHPLA-NETFVAK-DNKILCNKCTTR--EDSP   67 (101)
T ss_dssp             SCCCBCSSSCCBCCSS-SCEEEETTEEE----------ETTTCCCSSSCCCTT-SSCCEEE-TTEEECHHHHTT--CCCC
T ss_pred             CCCCcCcccCCcccCC-ceEEEECccCh----------hhcCCcccccCCCCC-cCeeECc-CCEEEChhHhhh--hcCC
Confidence            5789999999999742 13788888764          999999999999995 7778766 999999999998  6889


Q ss_pred             CCCchhhHHH
Q 019777          120 ECQPLYLEIQ  129 (336)
Q Consensus       120 ~C~~c~~~I~  129 (336)
                      +|..|.++|.
T Consensus        68 ~C~~C~~~I~   77 (101)
T 2cup_A           68 KCKGCFKAIV   77 (101)
T ss_dssp             BCSSSCCBCC
T ss_pred             ccccCCCccc
Confidence            9999987764

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.12  E-value=5.1e-11  Score=88.68  Aligned_cols=67  Identities=19%  Similarity=0.467  Sum_probs=56.4

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++++++|..|+++|.++   .|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+  .+.
T Consensus         2 ~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~   64 (70)
T 2d8z_A            2 SSGSSGCVQCKKPITTG---GVTYREQPW----------HKECFVCTACRKQLS-GQRFTAR-DDFAYCLNCFCD--LYA   64 (70)
T ss_dssp             CCCCCBCSSSCCBCCSS---EEESSSSEE----------ETTTSBCSSSCCBCT-TSCCEES-SSSEECHHHHHH--HTC
T ss_pred             CCCCCCCcccCCeeccc---eEEECcccc----------CCCCCccCCCCCcCC-cCceEee-CCeEECHHHHHH--Hhc
Confidence            35789999999999864   577777763          999999999999996 6778765 999999999988  577


Q ss_pred             CCCC
Q 019777          119 HECQ  122 (336)
Q Consensus       119 ~~C~  122 (336)
                      ++|.
T Consensus        65 ~~c~   68 (70)
T 2d8z_A           65 SGPS   68 (70)
T ss_dssp             CCCT
T ss_pred             cccC
Confidence            7775

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.12  E-value=7.8e-12  Score=94.73  Aligned_cols=46  Identities=22%  Similarity=0.426  Sum_probs=42.2

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.
T Consensus        31 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~   76 (77)
T 1g47_A           31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI   76 (77)
T ss_dssp             TTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred             CccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence            4789999999999999999988899999999999999999999996

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.11  E-value=4.4e-11  Score=90.33  Aligned_cols=62  Identities=16%  Similarity=0.392  Sum_probs=52.6

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .+|+++|..|+++|.+.   +|.+.++.|          |+.||+|..|+++|..+..|+.. +|++||..|+..+
T Consensus         2 s~~~~~C~~C~~~I~~~---~v~a~~~~w----------H~~CF~C~~C~~~L~~~~~f~~~-~~~~yC~~C~~~~   63 (73)
T 1wig_A            2 SSGSSGCDSCEKYITGR---VLEAGEKHY----------HPSCALCVRCGQMFAEGEEMYLQ-GSSIWHPACRQAA   63 (73)
T ss_dssp             CCSCCSCSSSCCCCSSC---CBCCSSCCB----------CTTTSCCSSSCCCCCSSCCCEEE-TTEEECTTHHHHT
T ss_pred             CcCcCCcccCCCEecCe---eEEeCCCCC----------CCCcCEeCCCCCCCCCCCeeEee-CCEEEChHHChHh
Confidence            36899999999999985   577777653          99999999999999656777665 9999999999874

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.10  E-value=1.7e-11  Score=90.32  Aligned_cols=44  Identities=23%  Similarity=0.434  Sum_probs=41.7

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK   44 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pk   44 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+
T Consensus        23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k   66 (66)
T 1nyp_A           23 MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV   66 (66)
T ss_dssp             TTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred             CccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence            57899999999999999999989999999999999999999885

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.09  E-value=3.1e-11  Score=94.76  Aligned_cols=52  Identities=23%  Similarity=0.447  Sum_probs=47.1

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI   52 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I   52 (336)
                      +|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..+....
T Consensus        34 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g   85 (91)
T 2d8y_A           34 NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG   85 (91)
T ss_dssp             SSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred             CCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence            5789999999999999999988899999999999999999999998555443

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.08  E-value=2.5e-11  Score=92.68  Aligned_cols=47  Identities=26%  Similarity=0.686  Sum_probs=44.3

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s   79 (80)
T 2cuq_A           33 RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS   79 (80)
T ss_dssp             SSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred             CCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence            57899999999999999999889999999999999999999999963

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A

Probab=99.08  E-value=2.2e-11  Score=101.34  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=80.6

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCCC-
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTH-  119 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~~-  119 (336)
                      .++|..|+++|.+..  ++.+.++. |         |+.||+|..|+++|.. +..|+.. ||++||..||.+  ...+ 
T Consensus         2 ~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~--~~~~~   66 (131)
T 2xjy_A            2 LLTCGGCQQNIGDRY--FLKAIDQY-W---------HEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLR--LFGQD   66 (131)
T ss_dssp             CCBBTTTCCBCCSSE--EEEETTEE-E---------ETTTCBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHH--HHCCC
T ss_pred             cccCcCCCCEeCCcE--EEEECCCc-c---------cHHHcccCcCCCccccCCCeEEEE-CCEEeecCchhh--hCCCc
Confidence            478999999999752  57888876 4         9999999999999962 5678776 999999999998  4555 


Q ss_pred             -CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------CCCCCCCCcCCccccccceecc
Q 019777          120 -ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------NGHHHLPETRGLCLSEEQTVTT  183 (336)
Q Consensus       120 -~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~g~~h~~~~rGl~~~E~~~~~s  183 (336)
                       .|..|.++|...         ..+      +.|+++.||.+-          ..+..+...+|..||+.++...
T Consensus        67 ~~C~~C~~~I~~~---------e~~------~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~  126 (131)
T 2xjy_A           67 GLCASCDKRIRAY---------EMT------MRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW  126 (131)
T ss_dssp             EECTTTCCEECTT---------SEE------EEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHH
T ss_pred             cChhhcCCccCcc---------cee------EeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHH
Confidence             899898776310         011      235666665431          1233355778889998887543

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.08  E-value=2.1e-11  Score=93.08  Aligned_cols=47  Identities=28%  Similarity=0.660  Sum_probs=44.3

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~   79 (80)
T 1x3h_A           33 MDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS   79 (80)
T ss_dssp             TTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred             CCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence            57899999999999999999888999999999999999999999974

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.07  E-value=8.3e-11  Score=87.87  Aligned_cols=69  Identities=16%  Similarity=0.412  Sum_probs=56.8

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++++++|..|+++|.+.+ .++.+.++.|          |..||+|..|+++|. +..|+.. +|++||..||.+  .+.
T Consensus         2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~   66 (72)
T 1wyh_A            2 SSGSSGCSACGETVMPGS-RKLEYGGQTW----------HEHCFLCSGCEQPLG-SRSFVPD-KGAHYCVPCYEN--KFA   66 (72)
T ss_dssp             CCCCCBCSSSCCBCCSSS-CEECSTTCCE----------ETTTCBCTTTCCBTT-TSCEEEE-TTEEEEHHHHHH--HTS
T ss_pred             CccCCCCccCCCccccCc-cEEEECcccc----------CcccCeECCCCCcCC-CCccCCc-CCeEECHHHHHH--Hcc
Confidence            468899999999999631 2677777653          999999999999996 5678765 999999999988  677


Q ss_pred             CCCC
Q 019777          119 HECQ  122 (336)
Q Consensus       119 ~~C~  122 (336)
                      ++|.
T Consensus        67 ~~C~   70 (72)
T 1wyh_A           67 SGPS   70 (72)
T ss_dssp             CCCC
T ss_pred             CcCC
Confidence            7775

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.07  E-value=2.8e-11  Score=92.80  Aligned_cols=47  Identities=17%  Similarity=0.442  Sum_probs=43.2

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeec-CCccccccccccccCCcCcc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV   47 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~-dg~~yC~~CY~~~~~pkC~~   47 (336)
                      +|+.||++||+|..|+++|.+..|+.. +|++||+.||.++|+|+|++
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~   80 (81)
T 2dlo_A           33 MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS   80 (81)
T ss_dssp             TTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred             CCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence            578999999999999999998888875 79999999999999999974

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.06  E-value=4.9e-12  Score=112.22  Aligned_cols=117  Identities=16%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++.++|..|+++|.+.  .++.+.++. |         |+.||+|..|+++|.. +..|+.. ||++||..||.++  +.
T Consensus         3 l~~~~C~~C~~~I~~~--~~~~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~cy~~~--~~   67 (188)
T 1rut_X            3 LSWKRCAGCGGKIADR--FLLYAMDSY-W---------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRL--FG   67 (188)
T ss_dssp             -CCCBBTTTCCBCCCS--EEEEETTEE-E---------CGGGCBCTTTCCBHHHHCSEEEEE-TTEEECHHHHHHH--HS
T ss_pred             CCCCcCccCCCEeCCc--eeEEecCcE-e---------cccCcccCCCCcccccCCceEEEe-CCccccccccccc--cc
Confidence            5678999999999975  257788876 4         9999999999999963 4678776 9999999999984  44


Q ss_pred             C--CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCc----------CCCCCCCCCcCCccccccceecceec
Q 019777          119 H--ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE----------KNGHHHLPETRGLCLSEEQTVTTVLR  186 (336)
Q Consensus       119 ~--~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e----------~~g~~h~~~~rGl~~~E~~~~~s~~~  186 (336)
                      +  .|..|.++|...         ..+      +.|+++.||.+          ...+..+...+|..||+.+|...+..
T Consensus        68 ~~~~C~~C~~~I~~~---------e~~------i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~  132 (188)
T 1rut_X           68 NSGACSACGQSIPAS---------ELV------MRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN  132 (188)
T ss_dssp             CCEECTTTCCEECTT---------SEE------EEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred             cCCccccCCCccccC---------cEE------EEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence            5  799888776410         011      23556666543          11123456788999999998766653

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.06  E-value=2.2e-10  Score=86.76  Aligned_cols=68  Identities=13%  Similarity=0.282  Sum_probs=57.1

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc-chhhhcccC
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMD  117 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~-~C~~~~v~~  117 (336)
                      ..+.++|..|+++|.+.+  .|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||. .||.+  .+
T Consensus         6 ~~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~--~f   69 (76)
T 2cu8_A            6 SGMASKCPKCDKTVYFAE--KVSSLGKDW----------HKFCLKCERCSKTLT-PGGHAEH-DGKPFCHKPCYAT--LF   69 (76)
T ss_dssp             CCCCCBCTTTCCBCCTTT--EEEETTEEE----------ETTTCBCSSSCCBCC-TTSCEEE-TTEEECTTTHHHH--HS
T ss_pred             CCCCCCCcCCCCEeECCe--EEEECCeEe----------eCCCCCCCCCCCccC-CCceEeE-CCEEecchHHHHH--hc
Confidence            457899999999999543  678888764          999999999999996 6678766 9999999 79988  57


Q ss_pred             CCCCC
Q 019777          118 THECQ  122 (336)
Q Consensus       118 ~~~C~  122 (336)
                      .++|.
T Consensus        70 ~~kc~   74 (76)
T 2cu8_A           70 GSGPS   74 (76)
T ss_dssp             CSSCS
T ss_pred             ccccC
Confidence            77775

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=99.06  E-value=3.4e-11  Score=94.19  Aligned_cols=46  Identities=22%  Similarity=0.546  Sum_probs=43.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|.
T Consensus        43 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~   88 (89)
T 1x64_A           43 RDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS   88 (89)
T ss_dssp             SSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred             CCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence            5789999999999999999988899999999999999999999985

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.06  E-value=1.5e-10  Score=86.64  Aligned_cols=68  Identities=16%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             ccCCcCcccCCcccCC-CCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019777           40 QHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT  118 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~-~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~  118 (336)
                      ++.++|..|+++|.+. +..+|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..|+.+  .+.
T Consensus         3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~w----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c~~~--~~~   68 (72)
T 1x4l_A            3 SGSSGCAGCTNPISGLGGTKYISFEERQW----------HNDCFNCKKCSLSLV-GRGFLTE-RDDILCPDCGKD--ISG   68 (72)
T ss_dssp             SCSCSBTTTTBCCCCSSSCSCEECSSCEE----------CTTTCBCSSSCCBCT-TSCCEEC-SSSEECHHHHHT--CCC
T ss_pred             CCCCCCcCCCccccCCCCcceEEECCccc----------CcccCEeccCCCcCC-CCccEeE-CCEEEChhHcCc--ccC
Confidence            5789999999999961 123677877763          999999999999996 7777655 999999999987  455


Q ss_pred             CCC
Q 019777          119 HEC  121 (336)
Q Consensus       119 ~~C  121 (336)
                      +.+
T Consensus        69 p~~   71 (72)
T 1x4l_A           69 PSS   71 (72)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            544

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3

Probab=99.03  E-value=2e-10  Score=87.01  Aligned_cols=68  Identities=15%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc-chhhhcccCCCCC
Q 019777           43 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMDTHEC  121 (336)
Q Consensus        43 pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~-~C~~~~v~~~~~C  121 (336)
                      |+|..|+++|....  .|.+.++.|          |..||+|..|+++|. +..|+.. ||++||. .||.+  .+.++|
T Consensus         1 p~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~--~f~~~C   64 (76)
T 1iml_A            1 PKCPKCDKEVYFAE--RVTSLGKDW----------HRPCLKCEKCGKTLT-SGGHAEH-EGKPYCNHPCYSA--MFGPKG   64 (76)
T ss_dssp             CBCTTTSSBCCGGG--EEEETTEEE----------ETTTCBCTTTCCBCC-TTTEEEE-TTEEEETTTHHHH--HSSCCC
T ss_pred             CcCCCCCCEEECce--EEEECCccc----------cCCCCCccccCccCC-CCceECc-CCeEeeCHHHHHH--HhCccC
Confidence            68999999998532  678887764          999999999999996 5578765 9999999 69988  678899


Q ss_pred             Cchhh
Q 019777          122 QPLYL  126 (336)
Q Consensus       122 ~~c~~  126 (336)
                      ..|..
T Consensus        65 ~~C~~   69 (76)
T 1iml_A           65 FGRGG   69 (76)
T ss_dssp             SSCCC
T ss_pred             CCcCC
Confidence            88863

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.02  E-value=4.7e-11  Score=88.94  Aligned_cols=46  Identities=30%  Similarity=0.750  Sum_probs=42.6

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++..
T Consensus        23 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~   68 (70)
T 2d8x_A           23 MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS   68 (70)
T ss_dssp             TTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred             CcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence            5789999999999999999998999999999999999999988753

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.02  E-value=6.2e-11  Score=90.88  Aligned_cols=46  Identities=24%  Similarity=0.562  Sum_probs=43.6

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus        35 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~   80 (82)
T 1x63_A           35 KGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS   80 (82)
T ss_dssp             SSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred             CccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence            5789999999999999999998999999999999999999999985

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.01  E-value=2.3e-10  Score=86.49  Aligned_cols=68  Identities=13%  Similarity=0.346  Sum_probs=54.7

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      .+.++|..|+++|.+. +.++.+.++.|          |..||+|..|+++|. +..|+.. ||++||..||.+  .+.+
T Consensus         9 ~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~~   73 (77)
T 1g47_A            9 LASATCERCKGGFAPA-EKIVNSNGELY----------HEQCFVCAQCFQQFP-EGLFYEF-EGRKYCEHDFQM--LFAP   73 (77)
T ss_dssp             CCCCBCSSSCCBCCST-TTCEEETTEEE----------CTTTCCCTTTCCCCG-GGCSEEE-TTEEECHHHHHH--HCCC
T ss_pred             CCCCCchhcCCccCCC-ceEEEeCccEe----------ccccCeECCCCCCCC-CCCeEeE-CCeEeCHHHHHH--Hhhc
Confidence            5788999999999853 23677888764          999999999999996 5567766 999999999988  5677


Q ss_pred             CCC
Q 019777          120 ECQ  122 (336)
Q Consensus       120 ~C~  122 (336)
                      .|.
T Consensus        74 ~C~   76 (77)
T 1g47_A           74 CWI   76 (77)
T ss_dssp             C--
T ss_pred             ccC
Confidence            764

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=99.01  E-value=2e-10  Score=84.65  Aligned_cols=61  Identities=21%  Similarity=0.554  Sum_probs=50.7

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC--CCCCccCCCCccCCCCCceEEcCCCceec-cchhhhc
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDSA  114 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H--~~CF~C~~C~~~l~~~~~f~~~~dG~~yC-~~C~~~~  114 (336)
                      |+++|..|+++|.+. +..|.+.++.|          |  +.||+|..|+++|. +..|+.. ||++|| ..|+.++
T Consensus         1 fa~~C~~C~~~I~~~-~~~v~a~~~~w----------H~~~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~~C~~k~   64 (65)
T 2iyb_E            1 HAVVCQGCHNAIDPE-VQRVTYNNFSW----------HASTECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKKRM   64 (65)
T ss_dssp             -CEECTTTSSEECTT-SCEEEETTEEE----------ETTTTTSBCTTTCCBCT-TSCCEEE-TTEEESSHHHHHTT
T ss_pred             CcCCCcCCCCeeccC-ceEEEECCCcc----------CCCCCCEECCCCCCcCC-CCceEEE-CCEEecCHHHhhhh
Confidence            578999999999953 13788888764          9  99999999999996 7788766 899999 8998763

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.01  E-value=1e-10  Score=89.68  Aligned_cols=45  Identities=18%  Similarity=0.331  Sum_probs=41.1

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+|++.
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s   77 (79)
T 2cor_A           33 KNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS   77 (79)
T ss_dssp             SSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred             CcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence            58899999999999999999874 5899999999999999999764

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.01  E-value=2.5e-11  Score=92.87  Aligned_cols=46  Identities=17%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|++.
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~   78 (79)
T 1x62_A           33 RDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS   78 (79)
T ss_dssp             SSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred             CcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence            5789999999999999999888899999999999999999999875

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B

Probab=99.01  E-value=1.3e-10  Score=85.54  Aligned_cols=60  Identities=15%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      +++.++|..|+++|.++   .|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+
T Consensus         2 ~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~   61 (66)
T 1nyp_A            2 SMGVPICGACRRPIEGR---VVNAMGKQW----------HVEHFVCAKCEKPFL-GHRHYER-KGLAYCETHYNQ   61 (66)
T ss_dssp             CCCCCEETTTTEECCSC---EECCTTSBE----------ETTTCBCTTTCCBCS-SSCCEEE-TTEEECHHHHHH
T ss_pred             CcCCCCCcccCCEecce---EEEECcccc----------ccCcCEECCCCCCCC-CCceEeE-CCcEECHHHHHH
Confidence            46889999999999953   677777653          999999999999996 6778765 999999999987

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A

Probab=99.01  E-value=1.8e-10  Score=88.21  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE  120 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~  120 (336)
                      ..++|..|+++|....  .+.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.+  .+.++
T Consensus         6 ~~~~C~~C~~~I~~~~--~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~~~   69 (81)
T 1a7i_A            6 GGNKCGACGRTVYHAE--EVQCDGRSF----------HRCCFLCMVCRKNLD-STTVAIH-DAEVYCKSCYGK--KYGPK   69 (81)
T ss_dssp             --CBCSSSCCBCSSTT--EEEETTEEE----------ESSSEECSSSCCEEC-SSCCEEE-TTEEECSHHHHH--HCC--
T ss_pred             CCCcCcCcCccccCce--eEEeCCccc----------ccccCccCCCCCCCC-CCCeEee-CCEEECHHHHHH--HhCCc
Confidence            5689999999997543  678888764          999999999999996 5667766 999999999998  68888


Q ss_pred             CCchhh
Q 019777          121 CQPLYL  126 (336)
Q Consensus       121 C~~c~~  126 (336)
                      |.+|..
T Consensus        70 c~gcg~   75 (81)
T 1a7i_A           70 GYGYGQ   75 (81)
T ss_dssp             ------
T ss_pred             ccccCC
Confidence            887753

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=99.00  E-value=3.4e-10  Score=84.60  Aligned_cols=63  Identities=14%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcc
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI  115 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v  115 (336)
                      +++++|..|+++|.+.+ .+|.+.++.|          |..||+|..|+++|. +..|+.. ||++||..||.++.
T Consensus         3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~~~   65 (72)
T 1x61_A            3 SGSSGCGGCGEDVVGDG-AGVVALDRVF----------HVGCFVCSTCRAQLR-GQHFYAV-ERRAYCEGCYVATL   65 (72)
T ss_dssp             SCCCCCSSSCSCCCSSS-CCEECSSSEE----------CTTTCBCSSSCCBCT-TSCEEES-SSCEEEHHHHHHHH
T ss_pred             CCCCCCccCCCccCCCc-eEEEECCCeE----------cccCCcccccCCcCC-cCcCEee-CCeEECHHHHHHHH
Confidence            57899999999998631 3677887763          999999999999995 7788766 89999999998753

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=98.98  E-value=3.8e-10  Score=92.27  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=73.2

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTHE  120 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~~~  120 (336)
                      .++|..|+++|.+..  ++.+.++. |         |+.||+|..|+++|.. +..|+.. ||++||..||.+  .+.++
T Consensus         3 ~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~~y~~--~f~~~   67 (114)
T 1j2o_A            3 LLTCGGCQQNIGDRY--FLKAIDQY-W---------HEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLR--LGGSG   67 (114)
T ss_dssp             CBCBSSSCSCBCSSE--EEECSSSE-E---------CTTTCCCSSSCSCCCCSSSCCCCB-TTBCCCHHHHHH--HHTSC
T ss_pred             CCCCcCCCCeeCCcE--EEEECchh-H---------HHhcCcccccCCchhcCCCeeEEE-CCeeechHHHHH--HhCcc
Confidence            478999999999752  67777766 3         9999999999999963 4578765 999999999998  57778


Q ss_pred             CCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcCCCCCCCCCcCCcccccccee
Q 019777          121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV  181 (336)
Q Consensus       121 C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~~~~rGl~~~E~~~~  181 (336)
                      |..|..       +  ..+.           +     ......+..|...+|.+||..++.
T Consensus        68 c~~c~~-------~--~~~~-----------~-----~~~~~~g~~f~~~~~~~~C~~~~~  103 (114)
T 1j2o_A           68 GHMGSG-------G--DVMV-----------V-----GEPTLMGGEFGDEDERLITRLENT  103 (114)
T ss_dssp             CSSCBS-------C--SCCC-----------S-----SCSSTTSSBCCCSSSCCCEEEECT
T ss_pred             cCcCCC-------C--ceeE-----------c-----CCccCCCCeeEEcCCEeecchhhh
Confidence            776641       1  1110           0     122233446779999999988765

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=98.98  E-value=3.4e-10  Score=84.04  Aligned_cols=64  Identities=14%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             cccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           37 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        37 Y~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |..++.++|..|+++|.+.+ .++.+.++.|          |..||+|..|+++|. +..|+.. ||++||..|+.+
T Consensus         6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~   69 (72)
T 3f6q_B            6 FQGSASATCERCKGGFAPAE-KIVNSNGELY----------HEQCFVCAQCFQQFP-EGLFYEF-EGRKYCEHDFQM   69 (72)
T ss_dssp             CCCCTTCBCTTTCCBCCTTC-EEEEETTEEE----------ETTTSSCTTTCCCCG-GGCCEEE-TTEEECHHHHHH
T ss_pred             ccCcCCccchhcCccccCCc-eEEEeCcCee----------CcCCCcccCCCCCCC-CCCeEeE-CCeEeCHHHHHH
Confidence            44578899999999999753 3567888764          999999999999996 4467766 899999999976

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.97  E-value=5.4e-10  Score=83.13  Aligned_cols=60  Identities=23%  Similarity=0.538  Sum_probs=50.9

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .+.++|..|+++|.++   +|.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.++
T Consensus         3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c~~~~   62 (70)
T 2d8x_A            3 SGSSGCHQCGEFIIGR---VIKAMNNSW----------HPECFRCDLCQEVLA-DIGFVKN-AGRHLCRPCHNRE   62 (70)
T ss_dssp             CCSSBCSSSCCBCCSC---CEEETTEEE----------CTTTSBCSSSCCBCS-SSCCEEE-TTEEECHHHHHHH
T ss_pred             CCCCcCccCCCEecce---EEEECcccc----------cccCCEeCCCCCcCC-CCccEeE-CCeEECHHHhhhh
Confidence            3578999999999964   688888764          999999999999996 5567654 9999999999874

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A

Probab=98.97  E-value=4.4e-11  Score=106.33  Aligned_cols=59  Identities=19%  Similarity=0.384  Sum_probs=49.6

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .++|..|+++|....  .+.+.++.|          |+.||+|..|+++|. +..|+.. ||++||..||.++
T Consensus         7 ~~~C~~C~~~I~~~~--~v~a~g~~w----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~   65 (192)
T 1b8t_A            7 GKKCGVCQKAVYFAE--EVQCEGSSF----------HKSCFLCMVCKKNLD-STTVAVH-GDEIYCKSCYGKK   65 (192)
T ss_dssp             CEECTTTCCEECSSC--CEEETTEEE----------CTTTCBCTTTCCBCC-SSSEEEE-TTEEEEHHHHHHH
T ss_pred             CCcCccCCCeeccee--EEEeCCcee----------cCCCCcCcccCCcCC-CCeeEec-CCEeeChhhhHhh
Confidence            579999999997543  577888763          999999999999996 5678766 9999999999874

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.96  E-value=1.3e-10  Score=86.96  Aligned_cols=47  Identities=21%  Similarity=0.569  Sum_probs=41.4

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCccc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC   48 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C   48 (336)
                      +|+.||++||+|..|+++|.+..|+.+++++||+.||.++|. +|..+
T Consensus        25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~   71 (72)
T 1x61_A           25 LDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS   71 (72)
T ss_dssp             SSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred             CCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence            578999999999999999998889999999999999998774 45443

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.94  E-value=2.6e-10  Score=86.04  Aligned_cols=44  Identities=23%  Similarity=0.550  Sum_probs=40.1

Q ss_pred             CCCcccCCCeeecCCCCCCC-CCceeecCCccccccccccccCCc
Q 019777            1 MEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK   44 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~-~~~F~~~dg~~yC~~CY~~~~~pk   44 (336)
                      +|+.||++||+|..|+++|. +..|+.+++++||+.||.+++...
T Consensus        23 ~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~   67 (73)
T 1wig_A           23 GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED   67 (73)
T ss_dssp             SSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred             CCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence            58899999999999999998 778999999999999999877653

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.93  E-value=1e-09  Score=84.28  Aligned_cols=65  Identities=15%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE  120 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~  120 (336)
                      ..++|..|+++|....  +|.+.++.|          |+.||+|..|+++|. + .|+.. ||++||..||.+  .+.+.
T Consensus        14 ~~~~C~~C~~~I~~~~--~v~a~~~~w----------H~~CF~C~~C~~~L~-~-~~~~~-~g~~yC~~~y~~--~fg~~   76 (80)
T 2dj7_A           14 GPSHCAGCKEEIKHGQ--SLLALDKQW----------HVSCFKCQTCSVILT-G-EYISK-DGVPYCESDYHA--QFGSG   76 (80)
T ss_dssp             SCSCCTTTCCCCSSSC--CEEETTEEE----------CTTTCBCSSSCCBCS-S-CCEEE-TTEEECTTHHHH--HTTCC
T ss_pred             CCCCCcCcCCeeCCCe--EEEECCccc----------ccccCCcCcCCCCcC-C-CeEEE-CCEEECHHHHHH--HcCCC
Confidence            3578999999998543  678888763          999999999999996 5 57765 999999999988  57777


Q ss_pred             CC
Q 019777          121 CQ  122 (336)
Q Consensus       121 C~  122 (336)
                      |.
T Consensus        77 C~   78 (80)
T 2dj7_A           77 PS   78 (80)
T ss_dssp             ST
T ss_pred             CC
Confidence            75

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.91  E-value=9.2e-10  Score=84.27  Aligned_cols=64  Identities=20%  Similarity=0.485  Sum_probs=51.9

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      .+.++|..|+++|.+.   .|.+.++.|          |+.||+|..|+++|. +.. +.. ||++||..||.+  .+++
T Consensus        13 ~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~-f~~-~g~~yC~~cy~~--~f~p   74 (79)
T 2cor_A           13 LGKYICQKCHAIIDEQ---PLIFKNDPY----------HPDHFNCANCGKELT-ADA-REL-KGELYCLPCHDK--MGVS   74 (79)
T ss_dssp             CCCCBCTTTCCBCCSC---CCCCSSSCC----------CTTTSBCSSSCCBCC-TTC-EEE-TTEEECHHHHHT--TSCC
T ss_pred             cCCCCCccCCCEecce---EEEECccee----------CCCCCEeCCCCCccC-CCC-EeE-CCEEeCHHHHHH--hCCC
Confidence            5678999999999964   577777663          999999999999996 444 455 999999999988  5555


Q ss_pred             CC
Q 019777          120 EC  121 (336)
Q Consensus       120 ~C  121 (336)
                      .+
T Consensus        75 ~~   76 (79)
T 2cor_A           75 GP   76 (79)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.91  E-value=6.6e-10  Score=85.66  Aligned_cols=45  Identities=20%  Similarity=0.476  Sum_probs=40.5

Q ss_pred             CCCcccCCCeeecCCCCCCCCCcee--ecCCccccccccccccCCcC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKC   45 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~--~~dg~~yC~~CY~~~~~pkC   45 (336)
                      +|+.||++||+|..|+++|.+..|+  ++||++||+.||.++|++-+
T Consensus        34 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~   80 (82)
T 2co8_A           34 NGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS   80 (82)
T ss_dssp             TTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred             CCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence            5789999999999999999998888  47999999999999987654

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=98.90  E-value=1.1e-09  Score=85.54  Aligned_cols=65  Identities=18%  Similarity=0.323  Sum_probs=53.4

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      ...++|..|+++|.+.   +|.+.++.|          |..||+|..|++.|. +..|+.. ||++||..||.+  .+.+
T Consensus        23 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~p   85 (89)
T 1x64_A           23 QRMPLCDKCGSGIVGA---VVKARDKYR----------HPECFVCADCNLNLK-QKGYFFV-EGELYCETHARA--RTSG   85 (89)
T ss_dssp             CSCCBCTTTCCBCCSC---CEESSSCEE----------CTTTCCCSSSCCCTT-TSCCEEE-TTEEECHHHHHH--HSSS
T ss_pred             CcCCCcccCCCEeccc---EEEECCceE----------CccCCEecCCCCCCC-CCCeEeE-CCEEECHHHHHH--HhCC
Confidence            3568999999999974   577777653          999999999999996 5577776 999999999988  4555


Q ss_pred             CC
Q 019777          120 EC  121 (336)
Q Consensus       120 ~C  121 (336)
                      ++
T Consensus        86 ~~   87 (89)
T 1x64_A           86 PS   87 (89)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.88  E-value=1.2e-09  Score=85.64  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=55.0

Q ss_pred             ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019777           40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH  119 (336)
Q Consensus        40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~  119 (336)
                      ...++|..|+++|.+.+  .|.+.+..|          |..||+|..|+++|. +..|+.. ||++||..||.+  .+.+
T Consensus        13 ~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~~   76 (91)
T 2d8y_A           13 PARETCVECQKTVYPME--RLLANQQVF----------HISCFRCSYCNNKLS-LGTYASL-HGRIYCKPHFNQ--LFKS   76 (91)
T ss_dssp             SSSCBCTTTCCBCCTTS--EEECSSSEE----------ETTTCBCTTTCCBCC-TTTCCCS-SSCCCCHHHHHH--HSCC
T ss_pred             CCCCcCccCCCccCCce--eEEECCCEE----------CCCCCeeCCCCCCCC-CCCcEeE-CCEEECHHHHHH--HhCC
Confidence            45789999999998753  677777653          999999999999996 5557655 999999999988  5777


Q ss_pred             CCC
Q 019777          120 ECQ  122 (336)
Q Consensus       120 ~C~  122 (336)
                      +|.
T Consensus        77 kc~   79 (91)
T 2d8y_A           77 KGN   79 (91)
T ss_dssp             CSC
T ss_pred             CcC
Confidence            775

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.86  E-value=6e-10  Score=85.08  Aligned_cols=59  Identities=15%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      ..++|..|+++|.++   +|.+.++.|          |..||+|..|+++|. +..|+.. |+++||..||.++
T Consensus        14 ~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~   72 (79)
T 1x62_A           14 KLPMCDKCGTGIVGV---FVKLRDRHR----------HPECYVCTDCGTNLK-QKGHFFV-EDQIYCEKHARER   72 (79)
T ss_dssp             CCCCCSSSCCCCCSS---CEECSSCEE----------CTTTTSCSSSCCCHH-HHCCEES-SSCEECHHHHHHH
T ss_pred             CCCccccCCCCccCc---EEEECccee----------CcCcCeeCCCCCCCC-CCCeEeE-CCEEECHHHHHHH
Confidence            468999999999975   688888764          999999999999995 6667765 9999999999873

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B

Probab=98.85  E-value=3.2e-10  Score=84.24  Aligned_cols=42  Identities=21%  Similarity=0.466  Sum_probs=38.9

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+
T Consensus        31 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~   72 (72)
T 3f6q_B           31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA   72 (72)
T ss_dssp             TTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred             CcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence            478999999999999999998889999999999999998874

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=90.35  Aligned_cols=62  Identities=18%  Similarity=0.245  Sum_probs=51.8

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCC-CCCceEEcCCCceeccchhhh
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~-~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      ..+.++|..|+++|.+..  ++.+.++.|          |+.||+|..|+++|. .+..|+.. ||++||..||.+
T Consensus        58 ~~~~~~C~~C~~~I~~~~--~v~a~~~~w----------H~~CF~C~~C~~~L~~~g~~f~~~-dg~~yC~~cy~~  120 (123)
T 2l4z_A           58 GLSWKRCAGCGGKIADRF--LLYAMDSYW----------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR  120 (123)
T ss_dssp             CSSCSBBSSSSSBCCSSS--EEEETTEEE----------ETTTSBCTTTCCBGGGTTCCCBCS-SSCCBCHHHHHH
T ss_pred             CccCCcCcCCCCCcCCcE--EEEeCCcEE----------cccccCcCcCCCcccccCCceEEE-CCEEeCHHHhhh
Confidence            356789999999999753  688888763          999999999999995 25678765 999999999986

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.82  E-value=8.4e-10  Score=84.38  Aligned_cols=46  Identities=30%  Similarity=0.591  Sum_probs=41.2

Q ss_pred             CCCcccCCCeeecCCCCCCCC-Ccee-ecCCccccccccccccCCcCc
Q 019777            1 MEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~-~~F~-~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      +|+.||++||+|..|+++|.+ ..|. ++++++||+.||.++|++.|.
T Consensus        33 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s   80 (81)
T 1x6a_A           33 GEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS   80 (81)
T ss_dssp             TTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred             CCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence            578999999999999999974 6777 589999999999999998875

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}

Probab=98.79  E-value=6.9e-10  Score=92.30  Aligned_cols=42  Identities=19%  Similarity=0.559  Sum_probs=38.4

Q ss_pred             CCCcccCCCeeecCCCCCCC--CCceeecCCccccccccccccC
Q 019777            1 MEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~--~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|+.||++||+|..|+++|.  +..|+.++|++||+.||.++|+
T Consensus        80 ~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg  123 (123)
T 2l4z_A           80 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG  123 (123)
T ss_dssp             TTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred             CCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence            57899999999999999997  4689999999999999998875

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A

Probab=98.79  E-value=2e-09  Score=93.73  Aligned_cols=112  Identities=16%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE  120 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~  120 (336)
                      ..++|..|+++|.+..  ++.+.++. |         |+.||+|..|+++|. +..| .. ||++||..||.+  .+.+.
T Consensus         5 ~~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~-~~~f-~~-~g~~yC~~~y~~--~f~~~   67 (169)
T 2rgt_A            5 EIPMCAGCDQHILDRF--ILKALDRH-W---------HSKCLKCSDCHVPLA-ERCF-SR-GESVYCKDDFFK--RFGTK   67 (169)
T ss_dssp             --CBBSSSSSBCCSSS--CEECSSCE-E---------CTTTSBCTTTCCBCC-SCCE-ES-SSCEECHHHHHH--HHSCB
T ss_pred             CCCccccCCCccCCcE--EEEECCcE-E---------ccccCccCCCCCcCC-CCCc-cc-CCeeeecccccc--ccccc
Confidence            3579999999999753  57777776 3         999999999999996 4445 54 999999999998  67889


Q ss_pred             CCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------C-CCCCCCCcCCccccccceecce
Q 019777          121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------N-GHHHLPETRGLCLSEEQTVTTV  184 (336)
Q Consensus       121 C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~-g~~h~~~~rGl~~~E~~~~~s~  184 (336)
                      |..|.++|..          .+.     -+.|+++.||.+-          . |...+...+|..||+.+|...+
T Consensus        68 C~~C~~~I~~----------~~~-----v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~  127 (169)
T 2rgt_A           68 CAACQLGIPP----------TQV-----VRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK  127 (169)
T ss_dssp             CTTTCCBCCT----------TSE-----EEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred             ccccccccCC----------CcE-----EEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence            9999877641          000     0236666776431          1 2222345689999988876443

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.77  E-value=4.6e-09  Score=80.89  Aligned_cols=61  Identities=23%  Similarity=0.385  Sum_probs=48.7

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEE-cCCCceeccchhhhc
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSA  114 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~-~~dG~~yC~~C~~~~  114 (336)
                      ..++|..|+++|...+  .+.+.++.|          |..||+|..|++.|. +..|+. ..||++||..||.++
T Consensus        14 ~~~~C~~C~~~I~~~e--~v~a~~~~w----------H~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~   75 (82)
T 2co8_A           14 AGDLCALCGEHLYVLE--RLCVNGHFF----------HRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQT   75 (82)
T ss_dssp             SSCBCSSSCCBCCTTT--BCCBTTBCC----------BTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCC
T ss_pred             CCCCCcccCCCcccce--EEEECCCee----------CCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhh
Confidence            3579999999997543  566777653          999999999999996 666653 359999999999873

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.1e-09  Score=82.79  Aligned_cols=40  Identities=25%  Similarity=0.711  Sum_probs=36.9

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccc
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ   40 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~   40 (336)
                      +|+.||++||+|..|+++|.+..|+.++|++||+.||.++
T Consensus        38 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l   77 (77)
T 2egq_A           38 EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL   77 (77)
T ss_dssp             TTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred             CcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence            5789999999999999999998999999999999999753

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=98.76  E-value=1.5e-09  Score=79.92  Aligned_cols=40  Identities=25%  Similarity=0.561  Sum_probs=37.2

Q ss_pred             CCCccc--CCCeeecCCCCCCCCCceeecCCcccc-ccccccc
Q 019777            1 MEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ   40 (336)
Q Consensus         1 lg~~wH--~~CF~C~~C~~~L~~~~F~~~dg~~yC-~~CY~~~   40 (336)
                      +|+.||  ++||+|..|+++|.+..|+.+||++|| ++||.++
T Consensus        22 ~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~   64 (65)
T 2iyb_E           22 NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM   64 (65)
T ss_dssp             TTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred             CCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence            578999  999999999999999999999999999 8999764

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3

Probab=98.46  E-value=3.8e-08  Score=75.12  Aligned_cols=42  Identities=21%  Similarity=0.524  Sum_probs=35.0

Q ss_pred             CCCcccCCCeeecCCCCCCCCCceeecCCc-cccccccccccC
Q 019777            1 MEAFWHPECFRCHSCNLPITDVEFSMSGNR-PYHKHCYKEQHH   42 (336)
Q Consensus         1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~-~yC~~CY~~~~~   42 (336)
                      +|+.||++||+|..|+++|.+..|+..++. +||+.||.+++.
T Consensus        33 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~   75 (81)
T 1v6g_A           33 LGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV   75 (81)
T ss_dssp             TTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred             CCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence            578999999999999999987677766665 699999987543

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4

Probab=89.68  E-value=0.045  Score=34.10  Aligned_cols=29  Identities=10%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .++|..|++.+...+  .+.+.++.|          |..||
T Consensus         3 ~~~C~~C~k~Vy~~E--k~~~~g~~~----------Hk~CF   31 (31)
T 1zfo_A            3 NPNCARCGKIVYPTE--KVNCLDKFW----------HKACF   31 (31)
T ss_dssp             CCBCSSSCSBCCGGG--CCCSSSSCC----------CGGGC
T ss_pred             CCcCCccCCEEecce--eEEECCeEe----------cccCC
Confidence            468999999997653  456777664          88887

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=86.97  E-value=0.17  Score=40.43  Aligned_cols=105  Identities=16%  Similarity=0.390  Sum_probs=67.1

Q ss_pred             CCeeecCCCCCCCCC------ceeecCCccccccccccc--cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCC
Q 019777            8 ECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERD   79 (336)
Q Consensus         8 ~CF~C~~C~~~L~~~------~F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~   79 (336)
                      +=+.|..|...+.+.      .....=|..||..|..+.  ....|..|++.+....  +..    .|.         ..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~----l~i---------~~   70 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHP----IYI---------GS   70 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEE----CBC---------SS
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--ccc----ccc---------CC
Confidence            346788897776542      144456899999999764  3568999999998763  221    111         33


Q ss_pred             CCCccCCCCccCCC----CCceEEcCCCceeccchhhhcccCCCCCCchhhH
Q 019777           80 GTPRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE  127 (336)
Q Consensus        80 ~CF~C~~C~~~l~~----~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~  127 (336)
                      .-..|..|...+..    +...+...=|..+|..|..+.......|--|..+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~  122 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK  122 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCB
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCc
Confidence            44778889876631    1222345578899999987764444455555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	98.66
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.27
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	98.25
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	98.14
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.96
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	97.91
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.78
d1x63a1	37	Four and a half LIM domains protein 1, FHL-1 {Huma	97.78
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.77
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d2dloa1	35	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.66
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	97.62
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.61
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	97.6
d1v6ga1	41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	97.58
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.56
d1g47a2	35	Pinch (particularly interesting new Cys-His) prote	97.5
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	97.46
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	97.41
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	97.32
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.28
d2dara2	45	PDZ and LIM domain protein 5, Enigma {Human (Homo	96.87
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	96.82
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.72
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.71
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	96.52
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	96.44
d1x3ha2	32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	96.25
d2cura2	26	Four and a half LIM domains protein 1, FHL-1 {Huma	96.25
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	96.18
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	96.05
d2d8za1	26	Four and a half LIM domains protein 2, FHL2 {Human	96.05
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	96.03
d2cura1	31	Four and a half LIM domains protein 1, FHL-1 {Huma	95.91
d2dj7a1	31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	95.72
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	95.56
d1b8ta4	49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	95.4
d1x6aa1	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	95.15
d2dara1	32	PDZ and LIM domain protein 5, Enigma {Human (Homo	95.08
d1x61a2	32	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.02
d1x62a2	35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	94.93
d2d8ya2	42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	94.88
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	94.76
d1wyha1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	94.76
d1x4ka1	32	Four and a half LIM domains protein 2, FHL2 {Human	94.64
d1x64a1	45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	94.44
d1imla2	48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	94.37
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	94.16
d1x68a1	29	Four and a half LIM domains protein 5, FHL-5 {Huma	93.51
d2d8xa2	26	Pinch (particularly interesting new Cys-His) prote	93.36
d2cupa3	27	Four and a half LIM domains protein 1, FHL-1 {Huma	93.13
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	93.12
d1rutx3	31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	92.66
d1x4ka2	27	Four and a half LIM domains protein 2, FHL2 {Human	92.64
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	92.44
d1x64a2	31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	92.32
d2cu8a2	33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	92.29
d2dloa2	33	Thyroid receptor interacting protein 6, TRIP6 {Hum	91.99
d1rutx2	34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	91.43
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	90.76
d1b8ta2	65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	90.75
d1b8ta3	43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	90.57
d2d8xa1	32	Pinch (particularly interesting new Cys-His) prote	89.92
d1a7ia2	32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	89.85
d1wyha2	27	Four and a half LIM domains 3, FHL3 {Human (Homo s	89.69
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	89.52
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	88.81
d2co8a2	36	Nedd9 interacting protein with calponin homology,	88.74
d1wiga1	32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	88.67
d1rutx1	30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	88.65
d1j2oa1	30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	88.48
d1x62a1	31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	88.26
d1u5sb1	31	Pinch (particularly interesting new Cys-His) prote	88.19
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	87.71
d2dj7a2	36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	87.59
d2cora1	31	Pinch (particularly interesting new Cys-His) prote	87.43
d1x68a2	34	Four and a half LIM domains protein 5, FHL-5 {Huma	86.25
d1x3ha1	35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	86.21
d1x63a2	32	Four and a half LIM domains protein 1, FHL-1 {Huma	85.7
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	85.46
d2co8a2	36	Nedd9 interacting protein with calponin homology,	85.29
d2d8ya1	35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	84.28
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	83.37
d1x6aa2	34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	83.22
d2cupa2	31	Four and a half LIM domains protein 1, FHL-1 {Huma	83.04
d1x61a1	27	Thyroid receptor interacting protein 6, TRIP6 {Hum	82.24
d1x4la1	29	Four and a half LIM domains protein 2, FHL2 {Human	81.83
d1zfoa_	30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	80.38
d2cuqa2	35	Four and a half LIM domains 3, FHL3 {Human (Homo s	80.09

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.4e-09  Score=69.53  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             eeecCCCCCCCCCceeecCCccccccccccccCC
Q 019777           10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP   43 (336)
Q Consensus        10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~p   43 (336)
                      |+|+.|+++|.+..|+++||+|||+.||.++|+|
T Consensus         1 F~C~~C~~~f~~~~F~e~~G~pYCe~~Y~~lFAP   34 (35)
T d1g47a2           1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP   34 (35)
T ss_dssp             CCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCC
T ss_pred             CCCCCCcCCCCCCCeEEECCEecChHhHHhhcCC
Confidence            7999999999999999999999999999999998

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.1e-08  Score=63.96  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             cccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           35 HCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        35 ~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      +||.++|+|+|..|+++|.++   +|++.++.|          |++||
T Consensus         1 ~DY~~~fapkC~~C~~~I~g~---~v~Al~~~w----------HpeCF   35 (35)
T d1x3ha1           1 KDFLAMFSPKCGGCNRPVLEN---YLSAMDTVW----------HPECF   35 (35)
T ss_dssp             CCCCCCCSCBCTTTCCBCCSS---CEEETTEEE----------CTTTC
T ss_pred             CcHHHHhChhhhhcCCcccch---heeecCCcc----------CcccC
Confidence            489999999999999999987   799999884          99998

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.27  E-value=1e-07  Score=64.73  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=38.0

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccCCcCcccCCc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNF   51 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~   51 (336)
                      +|..|++.|++....++|++|||+.||.++|+|+....+..
T Consensus         1 KC~~C~k~Lds~t~~ehdg~~YCk~CY~k~fGPKG~g~G~g   41 (49)
T d1b8ta4           1 RCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG   41 (49)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred             ChhhcCCccCCCcccccCCcccchhhhhhccCCCccCcccC
Confidence            69999999999999999999999999999999999887754

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.3e-07  Score=58.06  Aligned_cols=35  Identities=26%  Similarity=0.805  Sum_probs=31.5

Q ss_pred             cccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           35 HCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        35 ~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      +||+++|+++|..|+++|...   -|+|++++ |         |.+||
T Consensus         1 PCyE~kfa~~C~~Ckk~It~G---GvtY~dqp-W---------HkeCF   35 (35)
T d2cuqa2           1 PCYENKFAPRCARCSKTLTQG---GVTYRDQP-W---------HRECL   35 (35)
T ss_dssp             CCCCCCSSCCCTTTCCCCCSC---CEESSSSE-E---------CTTTC
T ss_pred             CchHHHHHHHHhhcCCccccC---ceeecCCc-c---------hhhhC
Confidence            599999999999999999974   48999999 4         99998

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-07  Score=57.46  Aligned_cols=32  Identities=16%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|..|+++|+++.|..+|++|||..||.++|+
T Consensus         1 ~C~~C~~~L~GQry~~rd~~PyC~~Cf~~lfA   32 (32)
T d2d8za2           1 VCTACRKQLSGQRFTARDDFAYCLNCFCDLYA   32 (32)
T ss_dssp             BCSSSCCBCTTSCCEESSSSEECHHHHHHHTC
T ss_pred             CcccCCccccCceeeecCCCeehHHhhHhhcC
Confidence            58999999999999999999999999998874

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.7e-07  Score=54.13  Aligned_cols=32  Identities=25%  Similarity=0.704  Sum_probs=29.8

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|..|+++|+++.|..+|.+|||.+||-++|+
T Consensus         1 vCt~Ck~~LaGqrFTSrde~pYC~~Cfg~LfA   32 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSRDEDPYCVACFGELFA   32 (32)
T ss_dssp             BCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT
T ss_pred             CccccCccccCCccccCCCCccHHHHhHhhcC
Confidence            58999999999999999999999999988774

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.91  E-value=1.3e-06  Score=58.56  Aligned_cols=34  Identities=26%  Similarity=0.674  Sum_probs=32.2

Q ss_pred             eecCCCCCCCCCceeecCCcccc-ccccccccCCc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYH-KHCYKEQHHPK   44 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC-~~CY~~~~~pk   44 (336)
                      +|..|++.|+.....++|++||| +.||..+|+|+
T Consensus         1 kC~~C~K~L~sg~~aeHdg~pYC~k~CY~~~FGPk   35 (48)
T d1imla2           1 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK   35 (48)
T ss_dssp             BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCC
T ss_pred             CchhcCcCcCCCChhhcCCcccccccchhhccCCC
Confidence            68999999999999999999999 88999999996

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.8e-06  Score=53.20  Aligned_cols=31  Identities=19%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             eecCCCCCCCCCceeecCCcccccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQH   41 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~   41 (336)
                      +|..|.+|+.+..|++.||+|||+.+|.++.
T Consensus         1 VC~~C~~PF~~~~Fy~~~g~PyCe~HyH~~~   31 (32)
T d1x3ha2           1 VCGDCFTSFSTGSFFELDGRPFCELHYHHRR   31 (32)
T ss_dssp             BCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred             CcCccCCcCCCCCeEeECCccchHHhhhhhc
Confidence            5999999999999999999999999998753

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.5e-06  Score=51.68  Aligned_cols=31  Identities=26%  Similarity=0.640  Sum_probs=28.0

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|..|++.|.+ +|..+||.|||+.||+.+|+
T Consensus         1 kC~~C~~vL~g-EYm~kdG~PyCe~DY~~~FG   31 (31)
T d2dj7a1           1 KCQTCSVILTG-EYISKDGVPYCESDYHAQFG   31 (31)
T ss_dssp             BCSSSCCBCSS-CCEEETTEEECTTHHHHHTT
T ss_pred             CccccCccccc-eeecCCCCcccHHHHHHhcC
Confidence            68999999977 89999999999999998774

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.3e-06  Score=52.60  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             cccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           35 HCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        35 ~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .||.+.|+++|..|+++|.+. +..++|.+..          ||+.||
T Consensus         1 kCy~~~~a~~C~~C~k~I~~G-~k~veykg~~----------WHe~CF   37 (37)
T d1x63a1           1 KCTTREDSPKCKGCFKAIVAG-DQNVEYKGTV----------WHKDCF   37 (37)
T ss_dssp             CCCSCCCSCBCSSSCCBCCSS-SCEEECSSCE----------EETTTC
T ss_pred             CccccccCcccccCCCccCCC-CeEeEeCCcc----------chhccC
Confidence            589999999999999999875 4678888875          399998

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=97.77  E-value=1.8e-06  Score=51.44  Aligned_cols=30  Identities=27%  Similarity=0.702  Sum_probs=28.3

Q ss_pred             eeecCCCCCCCCCceeecCCcccccccccc
Q 019777           10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKE   39 (336)
Q Consensus        10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~   39 (336)
                      |+|+.|++.|.+.....+||.+||+.||.+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            899999999999999999999999999964

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.4e-06  Score=55.27  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccCCc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK   44 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pk   44 (336)
                      +|..|++.|.-..|...+|.+||+.||.++|.++
T Consensus         1 rC~~C~~~Ls~~~yas~~G~lYCkpHf~qLF~~k   34 (42)
T d2d8ya2           1 RCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK   34 (42)
T ss_dssp             BCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCC
T ss_pred             CcCcCCCCccCCcchhhCCEeccHHHHHHHHHhh
Confidence            6999999999999999999999999999999875

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=49.86  Aligned_cols=35  Identities=20%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             ccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           34 KHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        34 ~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      ++||.. ...+|.+|+++|.+.   ++.+.++.|          |+.||
T Consensus         1 E~Cy~~-tlEkC~~C~~~I~dr---iLrA~Gk~y----------HP~CF   35 (35)
T d2dloa1           1 EGCYVA-TLEKCATCSQPILDR---ILRAMGKAY----------HPGCF   35 (35)
T ss_dssp             CCCCCS-SCCBCTTTCCBCCSC---CEEETTEEE----------CTTTC
T ss_pred             ChhHHH-HHHHHHHhchHHHHH---HHHHhCCCC----------CCCCC
Confidence            368875 678999999999986   899999998          99998

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.5e-06  Score=50.43  Aligned_cols=32  Identities=19%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      .|+.|+.+|.+..|.+.+|++||+.||.+.|+
T Consensus         1 nCa~C~~sL~d~gFVEE~g~lYCe~Cye~ffA   32 (32)
T d2dara1           1 NCAHCKNTMAYIGFVEEKGALYCELCYEKFFA   32 (32)
T ss_dssp             BCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred             CcccccccHhhcceeeecCcEeHHHHHHHhcC
Confidence            38999999999999999999999999987653

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.61  E-value=5e-06  Score=59.36  Aligned_cols=36  Identities=25%  Similarity=0.600  Sum_probs=33.1

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD   46 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~   46 (336)
                      .|..|++.|++....++++++||+.||.++|+|+=.
T Consensus         1 ~C~~C~K~LdS~~~~eh~~e~YCk~CY~k~fGPkG~   36 (65)
T d1b8ta2           1 LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK   36 (65)
T ss_dssp             BCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCC
T ss_pred             CchhcCCccCCCccccCCCcccchhhhccccCCCcc
Confidence            489999999999999999999999999999999733

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.2e-06  Score=50.29  Aligned_cols=32  Identities=34%  Similarity=0.755  Sum_probs=29.6

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      .|..|.+||+...|..+|+..||..||++.|+
T Consensus         1 ~C~~C~qPIGtksfipk~~~~yCvpCyE~kfA   32 (32)
T d1x4ka1           1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA   32 (32)
T ss_dssp             CCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCCceEeecchhhcC
Confidence            48999999999999999999999999998774

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2e-05  Score=51.11  Aligned_cols=30  Identities=17%  Similarity=0.430  Sum_probs=27.3

Q ss_pred             cccccccCCcCcccCCcccCCCCceEEEeeecc
Q 019777           35 HCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPF   67 (336)
Q Consensus        35 ~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~f   67 (336)
                      .||+++|+.+|..|++.|+++   ++.+.++.|
T Consensus         8 ~DYq~~fG~~C~~C~~~ItG~---V~~Ag~~~y   37 (41)
T d1v6ga1           8 LDYQRLYGTRCFSCDQFIEGE---VVSALGKTY   37 (41)
T ss_dssp             SCGGGSCCCBCTTTCCBCCSC---CEEETTEEE
T ss_pred             ccHHHHhCcccccccCEeeee---eeEecCccc
Confidence            589999999999999999987   788999877

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.2e-06  Score=49.91  Aligned_cols=32  Identities=22%  Similarity=0.581  Sum_probs=29.6

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      .|..|.+||+.++|..+++..||..||+++|+
T Consensus         1 ~C~~C~qPIGtkSFip~~~~~yCvpCYE~kfA   32 (32)
T d1wyha1           1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA   32 (32)
T ss_dssp             BCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcccccCcccccccccCCCcEEEEeccccccC
Confidence            48999999999999999999999999998774

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.6e-05  Score=50.14  Aligned_cols=31  Identities=23%  Similarity=0.521  Sum_probs=27.8

Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      |+|..|+++|. +..|++. ||++||..||..+
T Consensus         1 F~C~~C~~~f~-~~~F~e~-~G~pYCe~~Y~~l   31 (35)
T d1g47a2           1 FVCAQCFQQFP-EGLFYEF-EGRKYCEHDFQML   31 (35)
T ss_dssp             CCCTTTCCCCG-GGCSEEE-TTEEECHHHHHHH
T ss_pred             CCCCCCcCCCC-CCCeEEE-CCEecChHhHHhh
Confidence            78999999997 7888877 9999999999883

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.2e-05  Score=49.50  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             eeecCCCCCCCCCceeecCCccccccccccccCC
Q 019777           10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHP   43 (336)
Q Consensus        10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~p   43 (336)
                      |+|+.|.+|+-+...+++.|..||+..|.++|+.
T Consensus         1 FvCA~CekPF~G~rhyE~~g~ayCe~Hy~qLfg~   34 (35)
T d1u5sb2           1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD   34 (35)
T ss_dssp             CBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred             CcccccCCccCCchhhhhcCchHHHHHHHHHhcc
Confidence            8999999999999999999999999999998864

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.6e-05  Score=47.11  Aligned_cols=30  Identities=20%  Similarity=0.600  Sum_probs=26.2

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .|..|+++|. |++|++. |++|||..||..+
T Consensus         1 ~C~~C~~~L~-GQry~~r-d~~PyC~~Cf~~l   30 (32)
T d2d8za2           1 VCTACRKQLS-GQRFTAR-DDFAYCLNCFCDL   30 (32)
T ss_dssp             BCSSSCCBCT-TSCCEES-SSSEECHHHHHHH
T ss_pred             CcccCCcccc-Cceeeec-CCCeehHHhhHhh
Confidence            3889999996 9999776 9999999999873

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=2.7e-05  Score=46.71  Aligned_cols=29  Identities=24%  Similarity=0.647  Sum_probs=27.2

Q ss_pred             eecCCCCCCCCCceeecCCcccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKE   39 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~   39 (336)
                      +|..|+++|+++.|...+++.||.+||+.
T Consensus         1 vC~~C~K~Lag~rFTa~eDq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSKKLAGQRFTAVEDQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred             CcccccchhcCceeEEecceEEEeeeecc
Confidence            58999999999999999999999999974

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=3.2e-05  Score=47.17  Aligned_cols=32  Identities=19%  Similarity=0.562  Sum_probs=28.6

Q ss_pred             eecCCCCCCCCCceeecCCccccc-cccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~-~CY~~~~~   42 (336)
                      +|..|++.|......++||+|||. .||..+|+
T Consensus         1 kCekC~ktL~~G~HaEH~gkPYC~~PCY~aLFG   33 (33)
T d2cu8a2           1 KCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG   33 (33)
T ss_dssp             BCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred             CchhcccccCCCCccccCCCcCcCcchHHhhcC
Confidence            589999999999999999999996 59987764

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00029  Score=46.28  Aligned_cols=24  Identities=17%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecc
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPF   67 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~f   67 (336)
                      ..|+|..|+++|.+.   +|++.++.|
T Consensus        17 r~P~C~~C~~pI~g~---~vtAlgk~W   40 (45)
T d2dara2          17 RTPMCAHCNQVIRGP---FLVALGKSW   40 (45)
T ss_dssp             CCCBBSSSCCBCCSC---EEEETTEEE
T ss_pred             CCeeccccCCcccCc---eeeecCCcc
Confidence            468999999999987   899999984

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00032  Score=42.31  Aligned_cols=29  Identities=21%  Similarity=0.610  Sum_probs=25.6

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|+++|. |++|... |.+|||.+|+..
T Consensus         1 vCt~Ck~~La-GqrFTSr-de~pYC~~Cfg~   29 (32)
T d2cuqa1           1 VCTGCQTPLA-GQQFTSR-DEDPYCVACFGE   29 (32)
T ss_dssp             BCSSSCCBCT-TCCEEEC-SSSEEEHHHHHH
T ss_pred             CccccCcccc-CCccccC-CCCccHHHHhHh
Confidence            4899999995 9999766 999999999976

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=96.72  E-value=0.00017  Score=42.77  Aligned_cols=30  Identities=27%  Similarity=0.617  Sum_probs=24.1

Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |+|..|++.|. ... +...||.+||+.||.+
T Consensus         1 frca~cgk~le-stt-~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLE-STT-LTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEEC-SSC-SEEETTEEECHHHHHH
T ss_pred             CccccccCccc-cce-eeccCCcEEEeeeeec
Confidence            78999999995 333 3455999999999975

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=96.71  E-value=0.00013  Score=43.86  Aligned_cols=31  Identities=19%  Similarity=0.537  Sum_probs=28.0

Q ss_pred             ecCCCCCCCCCceeecCCccccccccccccC
Q 019777           12 CHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        12 C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      |-.|++.|++.....+++.+||+.||-++|+
T Consensus         2 C~~C~K~LdStTva~h~~eiYCKsCygkkyg   32 (32)
T d1a7ia2           2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG   32 (32)
T ss_dssp             CSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred             chhhhhccCcceeeeecceEEehhhccccCC
Confidence            7889999999999999999999999987653

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00028  Score=43.30  Aligned_cols=32  Identities=9%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             eecCCCCCCCCCceee-cCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSM-SGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~-~dg~~yC~~CY~~~~~   42 (336)
                      +|..|++.|.+..|.. .++++||.+||.++|+
T Consensus         1 tCvvC~~~LDGvPFtvD~~n~i~Cv~DyHrkfA   33 (33)
T d2dloa2           1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA   33 (33)
T ss_dssp             BCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred             CeeEcCcccCCCcEEEcCCCCEeehhhhhhhcC
Confidence            5889999999999987 6799999999998774

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00026  Score=42.73  Aligned_cols=26  Identities=15%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             cccCCcCcccCCcccCCCCceEEEeeecc
Q 019777           39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPF   67 (336)
Q Consensus        39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~f   67 (336)
                      +.+.|+|..|++||.++   +|+++++.|
T Consensus         2 kmg~p~C~~C~~PI~~~---~vtAlgk~W   27 (31)
T d1u5sb1           2 SMGVPICGACRRPIEGR---VVNAMGKQW   27 (31)
T ss_dssp             CCCCCEETTTTEECCSC---EECCTTSBE
T ss_pred             CcCCcchhhcCCchhhh---Hhhhhcccc
Confidence            35789999999999986   799999984

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=40.53  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=25.2

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|.+++. +..|+++ ||+|||...|..
T Consensus         1 VC~~C~~PF~-~~~Fy~~-~g~PyCe~HyH~   29 (32)
T d1x3ha2           1 VCGDCFTSFS-TGSFFEL-DGRPFCELHYHH   29 (32)
T ss_dssp             BCSSSCCBSC-SSCCEES-SSCEECHHHHHH
T ss_pred             CcCccCCcCC-CCCeEeE-CCccchHHhhhh
Confidence            4899999996 7888888 999999988765

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00064  Score=40.66  Aligned_cols=28  Identities=25%  Similarity=0.650  Sum_probs=26.2

Q ss_pred             eecCCCCCCCCCceeecCCccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYK   38 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~   38 (336)
                      +|..|+..|.++.|+-.+.+.||+.||.
T Consensus         1 vC~tC~~kLRGqpFYAvekkayCE~CYi   28 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERRAYCEGCYV   28 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSCEEEHHHHH
T ss_pred             CeeEeCceecCCcceEeeccccccceee
Confidence            4889999999999999999999999995

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00057  Score=40.50  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=28.8

Q ss_pred             eecCCCCCCCCCceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|..|++.|....|+.++...||..|.+.+|+
T Consensus         1 tcs~ckq~igsgsffpkg~d~ycvtche~kfa   32 (32)
T d1x63a2           1 TCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA   32 (32)
T ss_dssp             CCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred             CcchhhhhcccccccCCCCcEEEEEeeccccC
Confidence            58999999999999999999999999987663

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0018  Score=38.36  Aligned_cols=29  Identities=31%  Similarity=0.777  Sum_probs=24.2

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .|..|++.|+.+.+  ++ +|.+||++|++++
T Consensus         1 nC~~CgkeltadAr--El-~geLyCLpChdKm   29 (31)
T d2cora1           1 NCANCGKELTADAR--EL-KGELYCLPCHDKM   29 (31)
T ss_dssp             BCSSSCCBCCTTCE--EE-TTEEECHHHHHTT
T ss_pred             CccccccccchhHH--Hh-cCCEEEEeccccc
Confidence            48999999986665  44 8999999999984

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0022  Score=38.13  Aligned_cols=29  Identities=14%  Similarity=0.714  Sum_probs=25.2

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|.+.|. |.+|... +++.||.+||..
T Consensus         1 vC~~C~K~La-g~rFTa~-eDq~yCVdCYK~   29 (31)
T d2cura1           1 VCVTCSKKLA-GQRFTAV-EDQYYCVDCYKN   29 (31)
T ss_dssp             BCTTTCCBCT-TSCEEEC-SSCEEEHHHHHH
T ss_pred             Ccccccchhc-CceeEEe-cceEEEeeeecc
Confidence            4899999996 9999776 889999999975

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0029  Score=37.91  Aligned_cols=28  Identities=25%  Similarity=0.589  Sum_probs=23.5

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      +|..|++.|  ...|... ||.|||..+|..
T Consensus         1 kC~~C~~vL--~gEYm~k-dG~PyCe~DY~~   28 (31)
T d2dj7a1           1 KCQTCSVIL--TGEYISK-DGVPYCESDYHA   28 (31)
T ss_dssp             BCSSSCCBC--SSCCEEE-TTEEECTTHHHH
T ss_pred             CccccCccc--cceeecC-CCCcccHHHHHH
Confidence            589999999  4567665 999999999876

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0039  Score=37.93  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=29.6

Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      |.|.+|+..+..++.|..++..++||..|+.+.
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~Cy~~~   33 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEV   33 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeecchhcc
Confidence            789999999998899998888999999999763

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.40  E-value=0.0044  Score=41.36  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=27.1

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCC
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC  121 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C  121 (336)
                      +|..|++.|.. ....+ +||++||+.||.+  .+.++.
T Consensus         1 KC~~C~k~Lds-~t~~e-hdg~~YCk~CY~k--~fGPKG   35 (49)
T d1b8ta4           1 RCAKCGKSLES-TTLAD-KDGEIYCKGCYAK--NFGPKG   35 (49)
T ss_dssp             BCTTTCCBCCS-SSEEE-ETTEEEEHHHHHH--HTCCCC
T ss_pred             ChhhcCCccCC-Ccccc-cCCcccchhhhhh--ccCCCc
Confidence            69999999974 44445 5999999999998  455544

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0036  Score=38.15  Aligned_cols=30  Identities=10%  Similarity=0.233  Sum_probs=22.5

Q ss_pred             cccccccCCcCcccCCcccCCCCceEEEeeecc
Q 019777           35 HCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPF   67 (336)
Q Consensus        35 ~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~f   67 (336)
                      ++|..+|+..|..|.+.|++.   ++.+..+.|
T Consensus         1 kdYw~kfge~C~~C~~~itGp---vMvAG~~K~   30 (34)
T d1x6aa1           1 KDYWGKFGEFCHGCSLLMTGP---FMVAGEFKY   30 (34)
T ss_dssp             CCSSCCSSCBCTTTCCBCCSC---CBCCTTCCB
T ss_pred             CcHHHHHHHHhhhhHhhcccc---eeeeccccc
Confidence            478899999999999999875   344444444

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 5, Enigma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0069  Score=36.44  Aligned_cols=29  Identities=17%  Similarity=0.543  Sum_probs=25.2

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|.++|. +-.|++. .|.+||..||++
T Consensus         1 nCa~C~~sL~-d~gFVEE-~g~lYCe~Cye~   29 (32)
T d2dara1           1 NCAHCKNTMA-YIGFVEE-KGALYCELCYEK   29 (32)
T ss_dssp             BCSSSCCBCS-SSCBEES-SSCEECHHHHHH
T ss_pred             CcccccccHh-hcceeee-cCcEeHHHHHHH
Confidence            4889999995 8889876 899999999986

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.007  Score=36.04  Aligned_cols=29  Identities=17%  Similarity=0.575  Sum_probs=25.5

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|+..|. |+.|+.+ +.+.||..||..
T Consensus         1 vC~tC~~kLR-GqpFYAv-ekkayCE~CYi~   29 (32)
T d1x61a2           1 VCSTCRAQLR-GQHFYAV-ERRAYCEGCYVA   29 (32)
T ss_dssp             BCSSSCCBCT-TSCEEES-SSCEEEHHHHHH
T ss_pred             CeeEeCceec-CCcceEe-eccccccceeee
Confidence            4889999995 9999998 899999999864

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0057  Score=37.28  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .-|.|..|+..|.+.   ++.++++.+          |++||
T Consensus         7 klp~CdkCg~GIVG~---~VK~rDk~r----------HPeCf   35 (35)
T d1x62a2           7 KLPMCDKCGTGIVGV---FVKLRDRHR----------HPECY   35 (35)
T ss_dssp             CCCCCSSSCCCCCSS---CEECSSCEE----------CTTTT
T ss_pred             cCccccccCCCcEeE---EEEeccccC----------CCCCC
Confidence            358899999999986   788999876          99997

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.004  Score=40.30  Aligned_cols=30  Identities=30%  Similarity=0.573  Sum_probs=25.6

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      +|..|++.|. -..|..+ +|.+||++||..+
T Consensus         1 rC~~C~~~Ls-~~~yas~-~G~lYCkpHf~qL   30 (42)
T d2d8ya2           1 RCSYCNNKLS-LGTYASL-HGRIYCKPHFNQL   30 (42)
T ss_dssp             BCTTTCCBCC-TTTCCCS-SSCCCCHHHHHHH
T ss_pred             CcCcCCCCcc-CCcchhh-CCEeccHHHHHHH
Confidence            6999999996 5577766 9999999999885

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0061  Score=35.79  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CcccCCcccCCCC-ceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSA-GLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~-g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|.+||++-.+ ++|.+.+..          ||..||
T Consensus         1 C~~C~kPItg~gg~kyisFE~R~----------WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFEERQ----------WHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECSSCE----------ECTTTC
T ss_pred             CCccCCcccccCCceEEEeeccc----------ccccCC
Confidence            7899999987532 567777764          499998

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0078  Score=36.20  Aligned_cols=28  Identities=21%  Similarity=0.720  Sum_probs=24.0

Q ss_pred             cCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           84 CCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        84 C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |..|.+++. ...|+.. ++..||.+||++
T Consensus         2 C~~C~qPIG-tkSFip~-~~~~yCvpCYE~   29 (32)
T d1wyha1           2 CSGCEQPLG-SRSFVPD-KGAHYCVPCYEN   29 (32)
T ss_dssp             CTTTCCBTT-TSCEEEE-TTEEEEHHHHHH
T ss_pred             cccccCccc-ccccccC-CCcEEEEecccc
Confidence            889999995 6678765 899999999987

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0089  Score=35.99  Aligned_cols=28  Identities=18%  Similarity=0.725  Sum_probs=24.0

Q ss_pred             cCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           84 CCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        84 C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |..|..+++ ...|+.. |+..||..||++
T Consensus         2 C~~C~qPIG-tksfipk-~~~~yCvpCyE~   29 (32)
T d1x4ka1           2 CHRCQQPIG-TKSFIPK-DNQNFCVPCYEK   29 (32)
T ss_dssp             CSSSCCCCC-SSSEEEE-TTEEEEHHHHHH
T ss_pred             cccccCccc-ccccccC-CCCceEeecchh
Confidence            889999995 6678766 899999999987

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.0076  Score=39.04  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=25.0

Q ss_pred             cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .-|.|..|+..|.+.   ++.++++.+          |++||
T Consensus        17 kLP~CdkCg~GIVG~---~VK~rDK~r----------HPeCf   45 (45)
T d1x64a1          17 RMPLCDKCGSGIVGA---VVKARDKYR----------HPECF   45 (45)
T ss_dssp             SCCBCTTTCCBCCSC---CEESSSCEE----------CTTTC
T ss_pred             cCccccccCCCcEEE---EEEeccccC----------CCCCC
Confidence            357899999999986   788999876          99998

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=94.37  E-value=0.013  Score=38.69  Aligned_cols=30  Identities=17%  Similarity=0.546  Sum_probs=23.7

Q ss_pred             ccCCCCccCCCCCceEEcCCCceec-cchhhhc
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLC-LECLDSA  114 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC-~~C~~~~  114 (336)
                      +|..|++.|.. ....+ .||++|| +.||..+
T Consensus         1 kC~~C~K~L~s-g~~ae-Hdg~pYC~k~CY~~~   31 (48)
T d1imla2           1 KCEKCGKTLTS-GGHAE-HEGKPYCNHPCYSAM   31 (48)
T ss_dssp             BCTTTCCBCCT-TTEEE-ETTEEEETTTHHHHH
T ss_pred             CchhcCcCcCC-CChhh-cCCcccccccchhhc
Confidence            68999999974 44444 4999999 8899883

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.014  Score=35.51  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      |.|..|++++- |.+.++. .|..||...|..+
T Consensus         1 FvCA~CekPF~-G~rhyE~-~g~ayCe~Hy~qL   31 (35)
T d1u5sb2           1 FVCAKCEKPFL-GHRHYER-KGLAYCETHYNQL   31 (35)
T ss_dssp             CBCTTTCCBCS-SSCCEEE-TTEEECHHHHHHH
T ss_pred             CcccccCCccC-Cchhhhh-cCchHHHHHHHHH
Confidence            78999999995 7777776 8999999998874

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.014  Score=34.10  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             CcccCCcccCCCC-ceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSA-GLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~-g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|.+||.+-.+ .+|.+.+..          ||.+||
T Consensus         1 C~~C~kPItg~gG~k~isFedR~----------WH~~CF   29 (29)
T d1x68a1           1 CVACSKPISGLTGAKFICFQDSQ----------WHSECF   29 (29)
T ss_dssp             CTTTCCCCCTTTTCCEEEETTEE----------EEGGGC
T ss_pred             CccccccccccCCceEEEeehhh----------cccccC
Confidence            7889999987532 577777764          488887

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.029  Score=31.99  Aligned_cols=27  Identities=30%  Similarity=0.687  Sum_probs=19.4

Q ss_pred             CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|.+||.... +-+.+... ||         |+.||
T Consensus         1 c~ecrkpigad~-ke~h~knr-~w---------h~~cf   27 (27)
T d2cupa3           1 CVECRKPIGADS-KEVHYKNR-FW---------HDTCF   27 (27)
T ss_dssp             CSSSCCBCCSSS-CEEEETTE-EE---------ETTTC
T ss_pred             CccccCCcCcch-HHhhcccc-cc---------ccccC
Confidence            788999998763 44555554 44         99998

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.016  Score=34.25  Aligned_cols=28  Identities=25%  Similarity=0.625  Sum_probs=25.1

Q ss_pred             eecCCCCCCCCCceeecCCccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYK   38 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~   38 (336)
                      +|+.|-.||+...|..+|++++|..|--
T Consensus         1 RCaKC~hpLA~E~F~aKd~kI~C~Kc~s   28 (31)
T d2cupa2           1 RCAKCLHPLANETFVAKDNKILCNKCTT   28 (31)
T ss_dssp             CCSSSCCCTTSSCCEEETTEEECHHHHT
T ss_pred             CchhhccccccCcccccCCeEeeccccc
Confidence            5899999999999999999999988753

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.66  E-value=0.02  Score=34.41  Aligned_cols=29  Identities=14%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           43 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        43 pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      -.|+.|++.|.+.+ -++.+++..|          |..||
T Consensus         3 g~Ca~C~~~I~~~e-~VmRA~~~Vy----------Hl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPASE-LVMRAQGNVY----------HLKCF   31 (31)
T ss_dssp             EECTTTCCEECTTS-EEEEETTEEE----------CGGGC
T ss_pred             cccccccCcCChhH-hheeccccee----------eeccC
Confidence            36999999999885 4667888887          88887

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.037  Score=31.66  Aligned_cols=27  Identities=22%  Similarity=0.631  Sum_probs=21.8

Q ss_pred             CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|.+.|.+. ...+++.+.. |         |..||
T Consensus         1 C~~C~ktiMPG-srKme~kG~~-W---------HEtCF   27 (27)
T d1x4ka2           1 CQECKKTIMPG-TRKMEYKGSS-W---------HETCF   27 (27)
T ss_dssp             BSSSCCCCCSS-SCEEEETTEE-E---------ETTTT
T ss_pred             CccccccccCC-ceeecccCCc-c---------ccccC
Confidence            78899999875 3578898876 5         99998

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.016  Score=34.46  Aligned_cols=29  Identities=24%  Similarity=0.613  Sum_probs=26.5

Q ss_pred             eecCCCCCCCCCceeecCCcccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKE   39 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~   39 (336)
                      +|..|...|++..|....|+.+|.+|..+
T Consensus         1 rC~~C~~~LAD~GFvKnagR~LCrpch~r   29 (32)
T d2d8xa1           1 RCDLCQEVLADIGFVKNAGRHLCRPCHNR   29 (32)
T ss_dssp             BCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred             CchHHHhHHHHhhhhhcccccccchhhhh
Confidence            58999999999999999999999999754

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 3, PDLIM3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.32  E-value=0.023  Score=33.65  Aligned_cols=28  Identities=18%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             eecCCCCCCCCCceeecCCccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYK   38 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~   38 (336)
                      .|..|+..|....+|..++++||+.+-.
T Consensus         1 vC~dCg~NLKqrG~Ffv~~~lyCE~HAr   28 (31)
T d1x64a2           1 VCADCNLNLKQKGYFFVEGELYCETHAR   28 (31)
T ss_dssp             CCSSSCCCTTTSCCEEETTEEECHHHHH
T ss_pred             CccccccChhhcceEEeccEEeehhhhh
Confidence            4899999999988888899999987643

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.044  Score=32.93  Aligned_cols=29  Identities=21%  Similarity=0.621  Sum_probs=22.1

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccc-hhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLE-CLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~-C~~~  113 (336)
                      +|..|++.|..|. ..+. ||+|||.. ||..
T Consensus         1 kCekC~ktL~~G~-HaEH-~gkPYC~~PCY~a   30 (33)
T d2cu8a2           1 KCERCSKTLTPGG-HAEH-DGKPFCHKPCYAT   30 (33)
T ss_dssp             BCSSSCCBCCTTS-CEEE-TTEEECTTTHHHH
T ss_pred             CchhcccccCCCC-cccc-CCCcCcCcchHHh
Confidence            5899999997555 3444 99999954 8865

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.04  Score=33.41  Aligned_cols=30  Identities=17%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|..|++.|. |..|....++++||.++|.+
T Consensus         1 tCvvC~~~LD-GvPFtvD~~n~i~Cv~DyHr   30 (33)
T d2dloa2           1 TCVVCHRGLD-GIPFTVDATSQIHCIEDFHR   30 (33)
T ss_dssp             BCSSSCCBCT-TSCEECCTTCCCEEHHHHHH
T ss_pred             CeeEcCcccC-CCcEEEcCCCCEeehhhhhh
Confidence            4889999996 89998877899999999876

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.43  E-value=0.0083  Score=36.46  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=27.4

Q ss_pred             eecCCCCCCCC--CceeecCCccccccccccccC
Q 019777           11 RCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHH   42 (336)
Q Consensus        11 ~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~   42 (336)
                      +|.-|+..|.+  ...|.+.|-+.|+.||.++|+
T Consensus         1 KCscC~~~LgeiG~s~ytk~~mILCk~DY~rlFG   34 (34)
T d1rutx2           1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG   34 (34)
T ss_dssp             BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS
T ss_pred             CCcchhcChhhccchheecCCEEEEchhHHHhcC
Confidence            58889999874  678899999999999988774

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.06  Score=33.20  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=24.1

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      ..+|..|++.+..-+  .+.+.++.|          |..||
T Consensus         7 ~~kC~~C~K~VY~~E--~~~a~g~~~----------Hk~CF   35 (35)
T d2d8ya1           7 RETCVECQKTVYPME--RLLANQQVF----------HISCF   35 (35)
T ss_dssp             SCBCTTTCCBCCTTS--EEECSSSEE----------ETTTC
T ss_pred             CcccccCCCEEeeee--eEecCCeeh----------hhccC
Confidence            568999999988764  678888876          99998

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.75  E-value=0.057  Score=37.80  Aligned_cols=30  Identities=17%  Similarity=0.409  Sum_probs=23.5

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDSA  114 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~  114 (336)
                      .|..|++.|. ...... .++++||+.||.+.
T Consensus         1 ~C~~C~K~Ld-S~~~~e-h~~e~YCk~CY~k~   30 (65)
T d1b8ta2           1 LCMVCKKNLD-STTVAV-HGDEIYCKSCYGKK   30 (65)
T ss_dssp             BCTTTCCBCC-SSSEEE-ETTEEEEHHHHHHH
T ss_pred             CchhcCCccC-CCcccc-CCCcccchhhhccc
Confidence            3889999996 444444 48899999999883

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.57  E-value=0.055  Score=34.91  Aligned_cols=29  Identities=7%  Similarity=0.142  Sum_probs=23.6

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .++|..|++.+...+  .+.+.++.|          |..||
T Consensus        15 ~~kC~~C~k~VY~~E--~~~~~g~~~----------Hk~CF   43 (43)
T d1b8ta3          15 SDGCPRCGQAVYAAE--KVIGAGKSW----------HKSCF   43 (43)
T ss_dssp             CEECTTTSCEECSSS--CEEETTEEE----------CTTTC
T ss_pred             CCcCccCCCEeeHHH--HhhcCCCcc----------ccCCC
Confidence            468999999988764  577888875          99998

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.097  Score=31.00  Aligned_cols=29  Identities=31%  Similarity=0.765  Sum_probs=24.6

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      +|..|...|. +..|+-. -|+.+|.+|+.+
T Consensus         1 rC~~C~~~LA-D~GFvKn-agR~LCrpch~r   29 (32)
T d2d8xa1           1 RCDLCQEVLA-DIGFVKN-AGRHLCRPCHNR   29 (32)
T ss_dssp             BCSSSCCBCS-SSCCEEE-TTEEECHHHHHH
T ss_pred             CchHHHhHHH-Hhhhhhc-ccccccchhhhh
Confidence            5899999995 8888754 899999999875

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=89.85  E-value=0.054  Score=32.15  Aligned_cols=28  Identities=18%  Similarity=0.590  Sum_probs=22.0

Q ss_pred             cCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           84 CCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        84 C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |-.|.+.|.  ..-+..+++.+||+.||.+
T Consensus         2 C~~C~K~Ld--StTva~h~~eiYCKsCygk   29 (32)
T d1a7ia2           2 CMVCRKNLD--STTVAIHDAEVYCKSCYGK   29 (32)
T ss_dssp             CSSSCCEEC--SSCCEEETTEEECSHHHHH
T ss_pred             chhhhhccC--cceeeeecceEEehhhccc
Confidence            778999995  3334566999999999976

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.053  Score=30.94  Aligned_cols=27  Identities=19%  Similarity=0.584  Sum_probs=20.9

Q ss_pred             CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|.+.|.+. ...+++.+.. |         |..||
T Consensus         1 C~~C~ktiMPG-srKmey~G~s-W---------HE~CF   27 (27)
T d1wyha2           1 CSACGETVMPG-SRKLEYGGQT-W---------HEHCF   27 (27)
T ss_dssp             CSSSCCBCCSS-SCEECSTTCC-E---------ETTTC
T ss_pred             CccccceecCC-cccccccCcc-c---------ccccC
Confidence            78899999875 3467788876 4         88888

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.089  Score=32.74  Aligned_cols=31  Identities=16%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             CccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      |.|..|.+++|.|++- .+.....+|..|...
T Consensus         1 FvC~vCr~pFP~GDRV-TFnGKeC~CQ~Cs~p   31 (40)
T d1v6ga2           1 FVCAVCRLPFPPGDRV-TFNGKECMCQKCSLP   31 (40)
T ss_dssp             SSCSSSCCCCCSSSCE-EEETTEEEEHHHHSC
T ss_pred             CcccccCCCCCCCCeE-EEcCceeehhhcCCC
Confidence            7899999999988874 665667888888654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.18  Score=37.31  Aligned_cols=46  Identities=15%  Similarity=0.313  Sum_probs=36.0

Q ss_pred             eeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCC
Q 019777           10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN   55 (336)
Q Consensus        10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~   55 (336)
                      +.|..|...+.+......-|..||..|..+....+|..|+.++...
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ   68 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCS
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchh
Confidence            6789998888764333356999999999887888899999887654

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.073  Score=32.99  Aligned_cols=29  Identities=14%  Similarity=0.230  Sum_probs=23.3

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      ..+|..|++.+..-+  .+.+.++.|          |..||
T Consensus         8 ~~~C~~C~K~VY~~E--rl~a~g~~y----------Hk~CF   36 (36)
T d2co8a2           8 GDLCALCGEHLYVLE--RLCVNGHFF----------HRSCF   36 (36)
T ss_dssp             SCBCSSSCCBCCTTT--BCCBTTBCC----------BTTTC
T ss_pred             CCcccccCCEEeeee--EEEecCcEe----------ccccC
Confidence            568999999988754  567888776          99998

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.062  Score=31.75  Aligned_cols=23  Identities=22%  Similarity=0.671  Sum_probs=18.0

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecc
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPF   67 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~f   67 (336)
                      ..-|..|.++|++.   ++++.++.|
T Consensus         5 ssgC~~C~~~ItGk---VLEAG~khY   27 (32)
T d1wiga1           5 SSGCDSCEKYITGR---VLEAGEKHY   27 (32)
T ss_dssp             CCSCSSSCCCCSSC---CBCCSSCCB
T ss_pred             cchhhhhhhhhhhh---hhhcccccc
Confidence            34699999999986   677777655

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.65  E-value=0.075  Score=31.56  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=17.2

Q ss_pred             CcCcccCCcccCCCCceEEEeeeccc
Q 019777           43 PKCDVCQNFIPTNSAGLIEYRAHPFW   68 (336)
Q Consensus        43 pkC~~C~~~I~~~~~g~i~~~~~~fW   68 (336)
                      .+|+.|+++|.+.-  ++.+.+.. |
T Consensus         3 ~~CaGC~~~I~DRf--lL~v~dr~-W   25 (30)
T d1rutx1           3 KRCAGCGGKIADRF--LLYAMDSY-W   25 (30)
T ss_dssp             CBBTTTCCBCCCSE--EEEETTEE-E
T ss_pred             cccCCCCCccchhh--hhccchhh-h
Confidence            47999999999874  55566654 5

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Rhombotin-2 (Lmo2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.48  E-value=0.096  Score=31.04  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=16.7

Q ss_pred             CcCcccCCcccCCCCceEEEeeeccc
Q 019777           43 PKCDVCQNFIPTNSAGLIEYRAHPFW   68 (336)
Q Consensus        43 pkC~~C~~~I~~~~~g~i~~~~~~fW   68 (336)
                      ..|+.|+++|.+.-  ++.+.+. +|
T Consensus         4 ~~CaGC~~~I~DRf--lL~a~Dr-~W   26 (30)
T d1j2oa1           4 LTCGGCQQNIGDRY--FLKAIDQ-YW   26 (30)
T ss_dssp             BCBSSSCSCBCSSE--EEECSSS-EE
T ss_pred             cccCCCCCcchHHH--HHHHHHH-HH
Confidence            57999999999874  4555554 45

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: PDZ and LIM domain protein 1 Elfin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.027  Score=33.41  Aligned_cols=27  Identities=11%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             eecCCCCCCCCCceeecCCcccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY   37 (336)
                      .|..|+..|....+|..++++||+.+-
T Consensus         1 vC~dCg~NLKqrG~Ffve~~lyCE~HA   27 (31)
T d1x62a1           1 VCTDCGTNLKQKGHFFVEDQIYCEKHA   27 (31)
T ss_dssp             SCSSSCCCHHHHCCEESSSCEECHHHH
T ss_pred             CccccccChhhcceEEeccEEehhhhh
Confidence            489999999988888889999998754

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.02  Score=34.25  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             cCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCc
Q 019777          116 MDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE  160 (336)
Q Consensus       116 ~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e  160 (336)
                      |..++|.+|.+||           .+++      +.||++.||.|
T Consensus         3 mg~p~C~~C~~PI-----------~~~~------vtAlgk~WHpE   30 (31)
T d1u5sb1           3 MGVPICGACRRPI-----------EGRV------VNAMGKQWHVE   30 (31)
T ss_dssp             CCCCEETTTTEEC-----------CSCE------ECCTTSBEETT
T ss_pred             cCCcchhhcCCch-----------hhhH------hhhhccccCCC
Confidence            5678888887655           4666      78999999865

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.71  E-value=0.21  Score=29.58  Aligned_cols=28  Identities=14%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECL  111 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~  111 (336)
                      .|..|...|.+|++|... +|.+||....
T Consensus         1 tC~tC~n~LVPGDRFHyv-NG~lfCE~D~   28 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYI-NGSLFCEHDR   28 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEE-TTEEEEGGGC
T ss_pred             CcccccccccCCceeEEe-cCEEEEecCC
Confidence            488999888889999766 9999998764

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 3, abLIM-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.16  Score=30.92  Aligned_cols=28  Identities=11%  Similarity=0.056  Sum_probs=21.6

Q ss_pred             CcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           43 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        43 pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      ..|+.|++.|...  +.+.+.++.          ||.+||
T Consensus         9 ~~CagCg~eik~g--QaL~ALdkq----------WH~~CF   36 (36)
T d2dj7a2           9 SHCAGCKEEIKHG--QSLLALDKQ----------WHVSCF   36 (36)
T ss_dssp             SCCTTTCCCCSSS--CCEEETTEE----------ECTTTC
T ss_pred             ccccccchhhhCC--ceeeeeecc----------eeeeeC
Confidence            4799999999864  356677765          399998

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.082  Score=31.06  Aligned_cols=28  Identities=18%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             eecCCCCCCCCCceeecCCcccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYKE   39 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~   39 (336)
                      .|+.|++.|.. .-.+.+|..||.+|..+
T Consensus         1 nC~~Cgkelta-dArEl~geLyCLpChdK   28 (31)
T d2cora1           1 NCANCGKELTA-DARELKGELYCLPCHDK   28 (31)
T ss_dssp             BCSSSCCBCCT-TCEEETTEEECHHHHHT
T ss_pred             Cccccccccch-hHHHhcCCEEEEecccc
Confidence            38999999976 45577899999999875

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 5, FHL-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.25  E-value=0.2  Score=29.72  Aligned_cols=28  Identities=14%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             eecCCCCCCCCCceeecCCccccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCYK   38 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~   38 (336)
                      .|..|+..|.+..|......++|++|-.
T Consensus         1 ncgkcsvslvg~gfltq~~~i~c~~cgs   28 (34)
T d1x68a2           1 NCGKCSVSLVGKGFLTQNKEIFCQKCGS   28 (34)
T ss_dssp             BCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred             CCccceEEEEeeeeeeccCcEEehhcCC
Confidence            3788999999999999999999998853

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.18  Score=30.92  Aligned_cols=27  Identities=22%  Similarity=0.758  Sum_probs=21.9

Q ss_pred             eeecCCCCCCCCCceeecCCcccccccc
Q 019777           10 FRCHSCNLPITDVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY   37 (336)
                      -+|..|+++|.+ .+..--|+-||.+||
T Consensus         9 pkC~~C~~~I~g-~~v~Al~~~wHpeCF   35 (35)
T d1x3ha1           9 PKCGGCNRPVLE-NYLSAMDTVWHPECF   35 (35)
T ss_dssp             CBCTTTCCBCCS-SCEEETTEEECTTTC
T ss_pred             hhhhhcCCcccc-hheeecCCccCcccC
Confidence            478999999987 566667888998886

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.26  Score=28.74  Aligned_cols=29  Identities=14%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      .|+.|...+. ...|+.. ....||..|++.
T Consensus         1 tcs~ckq~ig-sgsffpk-g~d~ycvtche~   29 (32)
T d1x63a2           1 TCSNCKQVIG-TGSFFPK-GEDFYCVTCHET   29 (32)
T ss_dssp             CCSSSCCCCT-TSCEEEE-TTEEEEHHHHHH
T ss_pred             Ccchhhhhcc-cccccCC-CCcEEEEEeecc
Confidence            4889999986 5567776 678999999876

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.3  Score=28.76  Aligned_cols=29  Identities=14%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .++|..|++++...+  .+...++. |         |..|.
T Consensus         2 ~~~CprC~K~VYfaE--k~~~lgk~-W---------Hk~Cl   30 (30)
T d2cu8a1           2 ASKCPKCDKTVYFAE--KVSSLGKD-W---------HKFCL   30 (30)
T ss_dssp             CCBCTTTCCBCCTTT--EEEETTEE-E---------ETTTC
T ss_pred             CCcCCCCCCceeeHH--hhccCCcc-c---------ccccC
Confidence            579999999998764  67788876 5         88773

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.29  E-value=0.24  Score=30.55  Aligned_cols=27  Identities=19%  Similarity=0.475  Sum_probs=23.4

Q ss_pred             eecCCCCCCCCCceeecCCcccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY   37 (336)
                      +|..|++..-..+-..-||+.|++.||
T Consensus        10 ~C~~C~K~VY~~Erl~a~g~~yHk~CF   36 (36)
T d2co8a2          10 LCALCGEHLYVLERLCVNGHFFHRSCF   36 (36)
T ss_dssp             BCSSSCCBCCTTTBCCBTTBCCBTTTC
T ss_pred             cccccCCEEeeeeEEEecCcEeccccC
Confidence            689999988777777889999999997

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Eplin, LIMA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.28  E-value=0.29  Score=29.99  Aligned_cols=27  Identities=19%  Similarity=0.620  Sum_probs=23.7

Q ss_pred             eecCCCCCCCCCceeecCCcccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY   37 (336)
                      +|..|++..-..+-..-||+.|++.||
T Consensus         9 kC~~C~K~VY~~E~~~a~g~~~Hk~CF   35 (35)
T d2d8ya1           9 TCVECQKTVYPMERLLANQQVFHISCF   35 (35)
T ss_dssp             BCTTTCCBCCTTSEEECSSSEEETTTC
T ss_pred             ccccCCCEEeeeeeEecCCeehhhccC
Confidence            689999998877778889999999996

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.37  E-value=0.31  Score=28.80  Aligned_cols=27  Identities=15%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             eecCCCCCCC-CCceeecCCcccccccc
Q 019777           11 RCHSCNLPIT-DVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        11 ~C~~C~~~L~-~~~F~~~dg~~yC~~CY   37 (336)
                      +|+.|...|. +..|...+|.+||+.+-
T Consensus         1 tC~tC~n~LVPGDRFHyvNG~lfCE~D~   28 (33)
T d1rutx4           1 TCSTCRNRLVPGDRFHYINGSLFCEHDR   28 (33)
T ss_dssp             BCTTTCCBCCTTCEEEEETTEEEEGGGC
T ss_pred             CcccccccccCCceeEEecCEEEEecCC
Confidence            4889998886 46788899999999874

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Lim domain kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.16  Score=30.64  Aligned_cols=30  Identities=30%  Similarity=0.675  Sum_probs=24.1

Q ss_pred             eeecCCCCCCCC-Cceee-cCCcccccccccc
Q 019777           10 FRCHSCNLPITD-VEFSM-SGNRPYHKHCYKE   39 (336)
Q Consensus        10 F~C~~C~~~L~~-~~F~~-~dg~~yC~~CY~~   39 (336)
                      |.|..|+.-|.+ ..|.. ...++||-.||.+
T Consensus         1 F~C~~C~~fIgdgdsyaLVerskLYCG~Cy~~   32 (34)
T d1x6aa2           1 FACMSCKVIIEDGDAYALVQHATLYCGKCHNE   32 (34)
T ss_dssp             CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred             CcccccccEEecCceEEEEeeceeeeecchhc
Confidence            789999999986 45654 4578999999975

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 1, FHL-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.04  E-value=0.36  Score=28.21  Aligned_cols=29  Identities=24%  Similarity=0.675  Sum_probs=23.4

Q ss_pred             ccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019777           83 RCCSCERMEPRDTKYLSLDDGRKLCLECLDS  113 (336)
Q Consensus        83 ~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~  113 (336)
                      +|..|=.+|. .+.|+.. |++++|..|-.+
T Consensus         1 RCaKC~hpLA-~E~F~aK-d~kI~C~Kc~sr   29 (31)
T d2cupa2           1 RCAKCLHPLA-NETFVAK-DNKILCNKCTTR   29 (31)
T ss_dssp             CCSSSCCCTT-SSCCEEE-TTEEECHHHHTT
T ss_pred             Cchhhccccc-cCccccc-CCeEeecccccc
Confidence            5788888995 7888776 999999998654

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Thyroid receptor interacting protein 6, TRIP6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.37  Score=26.86  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           45 CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        45 C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      |..|++-+.+...+++ +.+..|          |.+||
T Consensus         1 cggcgedvvgdgagvv-aldrvf----------hvgcf   27 (27)
T d1x61a1           1 CGGCGEDVVGDGAGVV-ALDRVF----------HVGCF   27 (27)
T ss_dssp             CSSSCSCCCSSSCCEE-CSSSEE----------CTTTC
T ss_pred             CCCcccccccCCcceE-EEeeeE----------EeccC
Confidence            7889999888765654 666666          99987

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.83  E-value=0.42  Score=27.71  Aligned_cols=26  Identities=27%  Similarity=0.847  Sum_probs=21.2

Q ss_pred             ecCCCCCCCC---CceeecCCcccccccc
Q 019777           12 CHSCNLPITD---VEFSMSGNRPYHKHCY   37 (336)
Q Consensus        12 C~~C~~~L~~---~~F~~~dg~~yC~~CY   37 (336)
                      |..|.+||.+   ..|...+.+-.+.+||
T Consensus         1 C~~C~kPItg~gg~kyisFE~R~WH~~CF   29 (29)
T d1x4la1           1 CAGCTNPISGLGGTKYISFEERQWHNDCF   29 (29)
T ss_dssp             BTTTTBCCCCSSSCSCEECSSCEECTTTC
T ss_pred             CCccCCcccccCCceEEEeecccccccCC
Confidence            7899999875   5687788888888885

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LASP-1
domain: LASP-1
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.38  E-value=0.11  Score=30.48  Aligned_cols=29  Identities=14%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019777           42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP   82 (336)
Q Consensus        42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF   82 (336)
                      .|.|+.|++.+.+.+  .+.-.++. |         |..||
T Consensus         2 n~~CaRC~k~VYp~E--kl~ClDk~-W---------HK~CF   30 (30)
T d1zfoa_           2 NPNCARCGKIVYPTE--KVNCLDKF-W---------HKACF   30 (30)
T ss_dssp             CCBCSSSCSBCCGGG--CCCSSSSC-C---------CGGGC
T ss_pred             CCcccccCCccccHH--HhhhhHHH-H---------hhccC
Confidence            478999999887643  34444543 4         99887

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.09  E-value=0.48  Score=28.78  Aligned_cols=26  Identities=27%  Similarity=0.800  Sum_probs=20.1

Q ss_pred             eecCCCCCCCCCceeecCCcccccccc
Q 019777           11 RCHSCNLPITDVEFSMSGNRPYHKHCY   37 (336)
Q Consensus        11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY   37 (336)
                      +|..|+++|....-. ..++|++++||
T Consensus        10 ~C~~Ckk~It~GGvt-Y~dqpWHkeCF   35 (35)
T d2cuqa2          10 RCARCSKTLTQGGVT-YRDQPWHRECL   35 (35)
T ss_dssp             CCTTTCCCCCSCCEE-SSSSEECTTTC
T ss_pred             HHhhcCCccccCcee-ecCCcchhhhC
Confidence            578999999875443 46689999986