Citrus Sinensis ID: 019787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCSQIKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHYFNY
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccHHHHHHHHHHHHHccccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccEEEccccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mgrapccdkanvkkgpwspeedSKLKEYIEKygtggnwialpqkaglkrcgksCRLRWLNylrpnikhgeftdeEDRLICSLFASIGSRWSIIAaqlpgrtdndikNYWNTKLKKKLmamapplssqkkstapplipsshhhHQALVSllpsqpyytpsnkslisnsfdsfepissntplhlfdnnnliqiqenqlfsnnnsmqgyypmkdnfltfgseqscsssdgscsqikqedigfhqgfnysngfeeNNQKFMLNygssdrggheslnqwsekpngyfgeiasdysledVKQLISCsningcnnenninffsstdqetklqdskvmyhyfny
Flexible Loop (DISEMBL)
mgrapccdkanvkkgpwspeedsKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRpnikhgeftdeEDRLICSLFASIGSRWSIIAaqlpgrtdndikNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCSQIKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFsstdqetklqdskVMYHYFNY
Low Complexity Region (SEG)
MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPLHLFDnnnliqiqenqlFSNNNSMQGYYPMKDNFLTFgseqscsssdgscsqIKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLiscsningcnnenninffssTDQETKLQDSKVMYHYFNY
Disordered region (IsUnstruct)
*************************KEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK****************************************************************PLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTF********************IGFHQGFNYSNGF******F**********************NGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFS************VMYHY***
Disordered Region (DISOPRED)
*GRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK*****************************************************************************************************************************************NQKFMLNYGSSDR**********************DYSLEDVKQLIS**************F**ST*****LQDSKVMYHYFNY
Disordered Region (DISEMBL)
MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA*********************HQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGS*************IKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHYFNY
Disordered Region (DISPRO)
***APCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM************************************************************************************************************C*****EDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHYFNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCSQIKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHYFNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q9SJL7	298	Transcription factor RAX2	no	no	0.479	0.540	0.708	7e-62
Q9FG68	329	Transcription factor RAX1	no	no	0.532	0.544	0.597	4e-61
Q9M2Y9	310	Transcription factor RAX3	no	no	0.351	0.380	0.864	6e-60
P81392	316	Myb-related protein 306 O	N/A	no	0.363	0.386	0.626	1e-41
Q9S9K9	257	Transcription factor MYB3	no	no	0.410	0.536	0.553	1e-41
Q7XBH4	257	Myb-related protein Myb4	no	no	0.357	0.466	0.636	2e-41
Q9SPG2	366	Transcription factor MYB2	no	no	0.348	0.319	0.635	6e-41
Q8GWP0	360	Transcription factor MYB3	no	no	0.357	0.333	0.622	8e-41
Q38851	236	Transcription repressor M	no	no	0.351	0.5	0.596	1e-40
P81393	232	Myb-related protein 308 O	N/A	no	0.351	0.508	0.596	3e-40

>sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1

 Score =  238 bits (606), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 136/168 (80%), Gaps = 7/168 (4%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEED+KLK+YIEK GTGGNWIALP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA- 119
           YLRPNI+HG+FT+EED +I SLFASIGSRWS+IAA L GRTDNDIKNYWNTKLKKKL+A 
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query: 120 MAPPLSSQK--KSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLIS 165
           MAPP        +++    PSS  H+  + SLLP    Y PS   L++
Sbjct: 121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLP----YNPSTNQLLT 164

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 149/211 (70%), Gaps = 32/211 (15%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VK+GPWSPEEDSKL++YIEKYG GGNWI+ P KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA- 119
           YLRPNIKHG+F++EEDR+I SLFA+IGSRWSIIAA LPGRTDNDIKNYWNTKL+KKL++ 
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query: 120 -------------MAPPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISN 166
                        + P     K+ T+P  IPSS ++  A        P   P+ KSLIS 
Sbjct: 121 SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYA------ENPNQYPT-KSLIS- 172

Query: 167 SFDSFEP--------ISSNTP--LHLFDNNN 187
           S + FE         I+ N P  L+L D+NN
Sbjct: 173 SINGFEAGDKQIISYINPNYPQDLYLSDSNN 203

Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1

 Score =  231 bits (589), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 111/118 (94%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEED+KLK YIE  GTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
           YLRPNIKHG F++EE+ +ICSL+ +IGSRWSIIAAQLPGRTDNDIKNYWNT+LKKKL+
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLI 118

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 92/123 (74%), Gaps = 1/123 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR PCCDK  VKKGPW+PEED  L  YI+++G G NW A+P   GL RC KSCRLRW N
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPG-NWRAIPSNTGLLRCSKSCRLRWTN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRP IK G+FT+ E+++I  L A +G+RW+ IA+ LP RTDNDIKNYWNT LKKKL  +
Sbjct: 60  YLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKL 119

Query: 121 APP 123
             P
Sbjct: 120 QSP 122

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA++ KG W+ EED  L +YI K+G G  W +LP+ AGL+RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGC-WRSLPRAAGLQRCGKSCRLRWMN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRP++K G FT+EED LI  L + +G++WS+IA +LPGRTDN+IKNYWNT +K+KL++ 
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSR 119

Query: 121 APPLSSQKKSTAPPLIPSS 139
               +S +      + PSS
Sbjct: 120 GIDPNSHRLINESVVSPSS 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCC+K  +KKGPW+PEED  L  +I+++G G NW ALP++AGL RCGKSCRLRW+N
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHG-NWRALPKQAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRP+IK G F+ EE+  I  L   +G+RWS IAA+LPGRTDN+IKN W+T LKK+L A 
Sbjct: 60  YLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAP 119

Query: 121 A 121
           A
Sbjct: 120 A 120

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  168 bits (425), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 89/118 (75%), Gaps = 1/118 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           M R PCC    +KKG W+ EED KL  YI  +G GG W  +PQKAGLKRCGKSCRLRW N
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGG-WRDIPQKAGLKRCGKSCRLRWTN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
           YL+P IK GEF+ EE+++I  L AS G++WS+IA  LP RTDN+IKNYWNT LKK+LM
Sbjct: 60  YLKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLM 117

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  167 bits (424), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 94/122 (77%), Gaps = 2/122 (1%)

Query: 1   MGRAPCCDK-ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWL 59
           MGR+PCCD+   VKKGPW PEED KL  YI + G G NW +LP+ AGL RCGKSCRLRW+
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYG-NWRSLPKLAGLNRCGKSCRLRWM 59

Query: 60  NYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119
           NYLRP+I+ G+F+D E+  I  L A +G++WS IA  LPGRTDN+IKNYWNT ++KKL+ 
Sbjct: 60  NYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQ 119

Query: 120 MA 121
           M 
Sbjct: 120 MG 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  KG W+ EED +L +YI  +G G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGC-WRSLPKSAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119
           YLRP++K G FTD+ED++I  L + +G++WS+IA +LPGRTDN+IKNYWNT +K+KL++
Sbjct: 60  YLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 95/119 (79%), Gaps = 1/119 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  KG W+ EED +L  YI  +G G  W +LP+ AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119
           YLRP++K G FT+EED LI  L + +G++WS+IA +LPGRTDN+IKNYWNT +++KL++
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLS 118

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
224118410	337	predicted protein [Populus trichocarpa]	0.931	0.928	0.619	1e-103
224106830	338	predicted protein [Populus trichocarpa]	0.928	0.923	0.632	1e-97
71041104	348	MYB24 [Malus x domestica]	0.922	0.890	0.539	2e-83
225436502	317	PREDICTED: transcription factor RAX1-lik	0.913	0.968	0.580	2e-80
147797667	317	hypothetical protein VITISV_033656 [Viti	0.913	0.968	0.574	4e-79
224138830	331	predicted protein [Populus trichocarpa]	0.875	0.888	0.530	3e-75
225441199	342	PREDICTED: transcription factor RAX1 [Vi	0.866	0.850	0.529	3e-75
356541944	340	PREDICTED: protein ODORANT1-like [Glycin	0.848	0.838	0.559	4e-75
356547159	340	PREDICTED: uncharacterized protein LOC10	0.857	0.847	0.559	4e-74
297734924	299	unnamed protein product [Vitis vinifera]	0.869	0.976	0.552	9e-74

>gi|224118410|ref|XP_002331475.1| predicted protein [Populus trichocarpa] gi|222873553|gb|EEF10684.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/357 (61%), Positives = 248/357 (69%), Gaps = 44/357 (12%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPN+KHGEF+DEEDR+ICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM
Sbjct: 61  YLRPNLKHGEFSDEEDRVICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLI----SNSFDSFEPIS- 175
           AP   SQ+K   PP    S H    L   LPS   Y  S  S      + SF  FEPIS 
Sbjct: 121 AP--QSQRK---PPTF-QSPHQTPPLSHSLPSM--YKDSGGSFSYYSQNRSFTGFEPISQ 172

Query: 176 ------SNTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSS-SDGS 228
                 S   + L  N+ L Q  +  LFS    MQ Y+P+KDN++ FGSE SCSS SDGS
Sbjct: 173 IPSSLLSTNSVSLATNSLLFQTTQEGLFS---PMQYYHPVKDNYMVFGSEASCSSNSDGS 229

Query: 229 CS------QIKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYF 282
           CS      +IKQED+GFH   + SNG+ + NQK ML  G++   G E LNQW EKPNG  
Sbjct: 230 CSLISYGREIKQEDMGFHSLMS-SNGYGDQNQKVMLGSGNN---GVEILNQWVEKPNGNI 285

Query: 283 GEIASDYS-LEDVKQLISCS----NINGCNNENNINFFSSTDQETKLQDSKVMYHYF 334
           GE  SDY  +EDVKQ +S S    ++NG NN +N+    +   ET      VMYHY+
Sbjct: 286 GETPSDYDFIEDVKQQVSSSGNHNDVNGSNNNDNLLIDENKTPET------VMYHYY 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106830|ref|XP_002314299.1| predicted protein [Populus trichocarpa] gi|222850707|gb|EEE88254.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/359 (63%), Positives = 251/359 (69%), Gaps = 47/359 (13%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+DEEDR+ICSLFA+IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM
Sbjct: 61  YLRPNIKHGEFSDEEDRVICSLFANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALV--SLLPSQPYYTPSNKSLI----SNSFDSFEPI 174
           AP   SQ+K+   P  PSS      L   SLL     Y  S  S      + SF  F+PI
Sbjct: 121 AP--QSQRKT---PPFPSSDQTDPPLPSHSLL---SIYKDSGGSFSYYSQNKSFTGFDPI 172

Query: 175 SSNTPLHLFDNNNLIQIQENQLFSNNNS------MQGYYP-MKDNFLTFGSEQSCSS-SD 226
            S  P  L  NNN+     + LF   +       MQ Y+P +KDNFL FGSE SCSS SD
Sbjct: 173 -SQIPSSLLSNNNVSFATNSLLFQPTSQEGLFSPMQYYHPAVKDNFLVFGSEASCSSNSD 231

Query: 227 GSCSQ-------IKQEDIGFHQGFNYSNGFEE-NNQKFMLNYGSSDRGGHESLNQWSEKP 278
           GSCSQ       IKQED+GFH   + +NG+E   NQKFML+YG+    G E+LNQW EKP
Sbjct: 232 GSCSQISYGRYEIKQEDMGFHSLMS-NNGYENYQNQKFMLSYGNH---GVENLNQWVEKP 287

Query: 279 NGYFGEIASDYSL-EDVKQLISCSNING---CNNENNINFFSSTDQETKLQDSKVMYHY 333
           NG  GE  SDY L EDVKQLIS S+ N    CN+   I+       E K Q+ KVMY+Y
Sbjct: 288 NGNTGETPSDYDLVEDVKQLISSSSNNNIIPCNDSLLID-------ENKTQE-KVMYYY 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041104|gb|AAZ20440.1| MYB24 [Malus x domestica]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 200/371 (53%), Positives = 228/371 (61%), Gaps = 61/371 (16%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA- 119
           YLRPNIKHGEF+DEEDR+ICSLFASIGSRWS+IAAQLPGRTDNDIKNYWNTKLKKKLM  
Sbjct: 61  YLRPNIKHGEFSDEEDRIICSLFASIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLMGM 120

Query: 120 -MAPPL--SSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTP-SNKSLISNSFDSFEPIS 175
            M PP   +  K    PP  PSS HH+     L+PS+P  +   + S  + SF  FE   
Sbjct: 121 HMGPPRPHNHHKNLLKPPPFPSSSHHNYQNQPLIPSEPLSSLYKDLSNYNRSFLGFEAPV 180

Query: 176 SNTPLHLFDNNNLIQIQEN-QLFSNNNSMQGYYPMKDN--FLTFGSEQSCS-SSDGSC-- 229
              P     +NN   I  N  +F   N   G     +N   L FGSE SCS SSDGSC  
Sbjct: 181 PLPPQVSLTSNNFSNISTNSSIFQTLNYPAGVKENNNNNTLLVFGSEGSCSTSSDGSCNN 240

Query: 230 ------------SQIKQEDIGF-HQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSE 276
                       + I QE++GF HQGF             MLNYG          NQW+E
Sbjct: 241 QISYDYCSRSEINNINQEEMGFDHQGF------------MMLNYG----------NQWTE 278

Query: 277 KPNG-YFGEIASDYSL----EDVK-QLISCSNINGC--------NNENNINFFSSTDQET 322
           +PNG YFG   +        EDVK QLIS  + N          ++++N   F+  + +T
Sbjct: 279 RPNGFYFGSENNTLEFTDLDEDVKQQLISTRSKNNYNNNTIINESSKSNSFLFNVNESKT 338

Query: 323 KLQDSKVMYHY 333
           +  D KVMY Y
Sbjct: 339 E-DDEKVMYFY 348

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436502|ref|XP_002276209.1| PREDICTED: transcription factor RAX1-like [Vitis vinifera]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 199/343 (58%), Positives = 233/343 (67%), Gaps = 36/343 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLK YIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKAYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+D+EDR+IC+LFA++GSRWS+IA +LPGRTDNDIKNYWNTKLKKK+M M
Sbjct: 61  YLRPNIKHGEFSDDEDRIICTLFANMGSRWSVIATRLPGRTDNDIKNYWNTKLKKKVMGM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPL 180
               SSQ+K   PP     +    ++ S     P   P ++  I   F S    ++ +PL
Sbjct: 121 FS--SSQRK--LPPFPSVQNPPSPSISSSYYIPPSTFPGHELPI--PFPSTHLNNNTSPL 174

Query: 181 HLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCS------QIKQ 234
               N +L+Q QE   F+       YYP+KDN   F SE SCSSSDGS S       IKQ
Sbjct: 175 ---TNVSLLQTQET--FAGPGQ---YYPVKDNLFMFASEASCSSSDGSGSQISFGRDIKQ 226

Query: 235 EDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASD-YSL-- 291
           E++G  Q +    GFEE N KFM+ YG S+ G   ++N W EKPNG FG    D Y+L  
Sbjct: 227 EEMGNFQSY-IPTGFEE-NHKFMMGYGGSNGGHDHNVNHWPEKPNGCFGGSPLDQYNLDQ 284

Query: 292 EDVK-QLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHY 333
           EDVK QLISCS  NGC +    +FF     E K Q+ KVMY+Y
Sbjct: 285 EDVKQQLISCS--NGCTS----SFFID---ENKTQE-KVMYYY 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797667|emb|CAN72078.1| hypothetical protein VITISV_033656 [Vitis vinifera]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 197/343 (57%), Positives = 232/343 (67%), Gaps = 36/343 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLK YIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKAYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+D+EDR+IC+LFA++GSRWS+IA +LPGRTDNDIKNYWNTKLKKK+M M
Sbjct: 61  YLRPNIKHGEFSDDEDRIICTLFANMGSRWSVIATRLPGRTDNDIKNYWNTKLKKKVMGM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPL 180
               SSQ+K    P +        +    +P   +  P ++  I   F S    ++ +PL
Sbjct: 121 FS--SSQRKLPPFPSVQXPPSPSISSSYYIPPSTF--PGHELPI--PFPSTHLNNNTSPL 174

Query: 181 HLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCS------QIKQ 234
               N +L+Q QE   F+       YYP+KDN   F SE SCSSSDGS S       IKQ
Sbjct: 175 ---TNVSLLQTQET--FAGPGQ---YYPVKDNLFMFASEASCSSSDGSGSQISFGRDIKQ 226

Query: 235 EDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASD-YSL-- 291
           E++G  Q +    GFEE N KFM+ YG S+ G   ++N W EKPNG FG    D Y+L  
Sbjct: 227 EEMGNFQSY-IPTGFEE-NHKFMMGYGGSNGGHDHNVNHWPEKPNGCFGGSPLDQYNLDQ 284

Query: 292 EDVK-QLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHY 333
           EDVK QLISCS  NGC +    +FF     E K Q+ KVMY+Y
Sbjct: 285 EDVKQQLISCS--NGCTS----SFFID---ENKTQE-KVMYYY 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138830|ref|XP_002322912.1| predicted protein [Populus trichocarpa] gi|222867542|gb|EEF04673.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/330 (53%), Positives = 211/330 (63%), Gaps = 36/330 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEED+KLKEY+ K+GTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKEYMAKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+D+EDR+ICSL+A+IGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM  
Sbjct: 61  YLRPNIKHGEFSDDEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGS 120

Query: 121 APPLSSQKKSTAPPLIPSSH--HHHQALVSLLPSQPYYTPSNKSLISNSFDSF-EPIS-S 176
             P + +K   A       H      +  + L   P +T SN S       SF EPIS S
Sbjct: 121 INPDALRKPQQAAHFSSLLHATSLPSSPSTPLSPSPSFTCSNNSYNYTLARSFTEPISFS 180

Query: 177 NTPL--HLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSE----QSCSSSDGSCS 230
           ++PL  + F   +++Q QE  + S  N     Y +KDN + FG E     S  S     S
Sbjct: 181 SSPLSNNSFTTASMLQPQETFVGSMQN-----YQVKDNLIMFGGEASCSSSDGSCSNQMS 235

Query: 231 QIKQE------------DIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKP 278
            +K+E             +G     NY +   E++QK M+   SS   GH+ LN W+ K 
Sbjct: 236 HVKEEYEHGDGANNNTGQVGLQ---NYLHNRVEDDQKLMV---SSGFAGHDVLNGWTGKQ 289

Query: 279 NGYFGEIASDYSLEDVKQLISCSNINGCNN 308
            G + E   DY LE++KQLIS S+   CNN
Sbjct: 290 IGLWEENPLDYGLEEIKQLISTSS---CNN 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441199|ref|XP_002270359.1| PREDICTED: transcription factor RAX1 [Vitis vinifera] gi|297739959|emb|CBI30141.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 182/344 (52%), Positives = 209/344 (60%), Gaps = 53/344 (15%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+D+EDR+ICS+FASIGS+WS+IA  LPGRTDNDIKNYWNTKLKKKLM M
Sbjct: 61  YLRPNIKHGEFSDDEDRIICSVFASIGSKWSVIANYLPGRTDNDIKNYWNTKLKKKLMGM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSL-LPSQ-----------------PYYTPSNKS 162
            P   SQ+K    P   +  HH Q   SL  PS                  PYYTP+  +
Sbjct: 121 VP--VSQRK----PHQATFSHHLQTYSSLSSPSHAVTTTATSSSYESNSSNPYYTPAAPT 174

Query: 163 LISNSFDSFEPISSNTPLHLFDNNN----LIQIQENQLFSNNNSMQGYYPMKDNFLTFGS 218
               SF   EPISS  P  L + N        I   + F+   S   +Y +KDN L   S
Sbjct: 175 --PTSFARLEPISS-IPSSLLNINTGSTAAAAIHPQEGFA---SPVHHYQVKDNLLIEAS 228

Query: 219 EQSCSS------SDGSCSQIKQ--------EDIGFHQGFNYSNGFEENNQKFMLNYGSSD 264
             S         S G   +  Q        E +GF Q + Y+ G ++ NQ+FM++  S  
Sbjct: 229 SSSDDGSGSNQISQGKEPEYDQYGAVGGRYEQLGF-QNYVYT-GLDDQNQRFMISNSSGG 286

Query: 265 RGGHESLNQWSEKPNGYFGEIASDYSLEDVKQLISCSNINGCNN 308
            GG  S     ++PNG  GE   D  LE+ KQLIS    N CNN
Sbjct: 287 GGGSGSHGWTDQRPNGMLGEPPLDLGLEEFKQLISA---NLCNN 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541944|ref|XP_003539432.1| PREDICTED: protein ODORANT1-like [Glycine max]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 180/322 (55%), Positives = 214/322 (66%), Gaps = 37/322 (11%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEEDSKLK+YIEK+GTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+DEEDR+ICSL+A+IGSRWSIIAAQLPGRTDNDIKNYWNTKLK+KLM +
Sbjct: 61  YLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGL 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLI--------SNSFDSFE 172
            P   S  +  AP    SS +          S   Y     +          ++SF   E
Sbjct: 121 LP---SSHQRIAPYQQFSSQNPSSFPSHSSLSSSQYRDYYYNSSHHYYIPAPTSSFTCLE 177

Query: 173 PISS-----NTPLHLFDNNNLIQIQENQLFSNNNSMQGYYPMKD-NFLTFGSEQSCSSSD 226
           PIS+            ++ +  Q QE  +   + S + YYP+ D + L FGSE SCSSSD
Sbjct: 178 PISAPSSNYTNTTTTSNSLSFYQHQEPLV---SVSPRQYYPITDSSMLVFGSETSCSSSD 234

Query: 227 GSCSQ------IKQEDIGFHQGFNYSNGFEENNQKFM-LNYGSSDRGGHESLNQWSEKPN 279
           GSCSQ      IKQED+GF    N+  G  +N  KFM +N+     GG E +NQW+++PN
Sbjct: 235 GSCSQVSLGREIKQEDMGFQ---NFMFGDHQNMNKFMNINHD----GGEEYVNQWTQRPN 287

Query: 280 GYF---GEIASDYSLEDVKQLI 298
           GY     + A DY LE +K LI
Sbjct: 288 GYIFQTQQTALDYDLEVIKNLI 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547159|ref|XP_003541984.1| PREDICTED: uncharacterized protein LOC100808114 [Glycine max]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 179/320 (55%), Positives = 220/320 (68%), Gaps = 32/320 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEEDSKLK+YIEK+GTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+DEEDR+ICSL+A+IGSRWSIIA QLPGRTDNDIKNYWNTKLK+KLM +
Sbjct: 61  YLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIATQLPGRTDNDIKNYWNTKLKRKLMGL 120

Query: 121 APP----LSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLI----SNSFDSFE 172
            P     ++  ++S+   L     H H + +S      YY  ++        ++SF   E
Sbjct: 121 LPASHQRIAPFQQSSPQNLSSFPSHSHSSSLSSSIYSDYYNHNSNHYYMPAPTSSFTCLE 180

Query: 173 PIS--SNTPLHLFDNNNLIQIQENQ--LFSNNNSMQGYYPMKD-NFLTFGSEQSCSSSDG 227
           PIS  S+   +    + L    +NQ  L S  + MQ YYP+KD + L FGSE SCSSSDG
Sbjct: 181 PISVPSSNYTNTTTASTLNPFYQNQEPLASIISPMQ-YYPIKDSSMLVFGSETSCSSSDG 239

Query: 228 SCSQ------IKQEDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGY 281
           SCSQ      +KQED+GF Q F + +    NN    +N+     GG E ++QW++KPNG+
Sbjct: 240 SCSQVSLGREVKQEDMGF-QNFMFGDHQNMNN----INHD----GGEEYVDQWTQKPNGH 290

Query: 282 F---GEIASDYSLEDVKQLI 298
                + A DY LE ++ LI
Sbjct: 291 IFQTQQTAMDYDLEVIRNLI 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734924|emb|CBI17158.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 188/340 (55%), Positives = 223/340 (65%), Gaps = 48/340 (14%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDSKLK YIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDSKLKAYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
           YLRPNIKHGEF+D+EDR+IC+LFA++GSRWS+IA +LPGRTDNDIKNYWNTKLKKK+M M
Sbjct: 61  YLRPNIKHGEFSDDEDRIICTLFANMGSRWSVIATRLPGRTDNDIKNYWNTKLKKKVMGM 120

Query: 121 APPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLISNSFDSFEPISSNTPL 180
               SSQ+K   PP     +    ++ S     P   P ++  I   F S    ++ +PL
Sbjct: 121 FS--SSQRK--LPPFPSVQNPPSPSISSSYYIPPSTFPGHELPI--PFPSTHLNNNTSPL 174

Query: 181 HLFDNNNLIQIQENQLFSNNNSMQGYYPMKDNFLTFGSEQSCSSSDGSCS------QIKQ 234
               N +L+Q QE   F+       YYP+KDN   F SE SCSSSDGS S       IKQ
Sbjct: 175 ---TNVSLLQTQET--FAGPGQ---YYPVKDNLFMFASEASCSSSDGSGSQISFGRDIKQ 226

Query: 235 EDIGFHQGFNYSNGFEENNQKFMLNYGSSDRGGHESLNQWSEKPNGYFGEIASDYSLEDV 294
           E++G  Q +    GFEEN+ KFM+ YG S+  G   L+Q+             +   EDV
Sbjct: 227 EEMGNFQSY-IPTGFEENH-KFMMGYGGSN--GGSPLDQY-------------NLDQEDV 269

Query: 295 K-QLISCSNINGCNNENNINFFSSTDQETKLQDSKVMYHY 333
           K QLISCS  NGC +   I+       E K Q+ KVMY+Y
Sbjct: 270 KQQLISCS--NGCTSSFFID-------ENKTQE-KVMYYY 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2057931	298	RAX2 "REGULATOR OF AXILLARY ME	0.479	0.540	0.708	4.8e-64
TAIR|locus:2181146	329	MYB37 "myb domain protein 37"	0.613	0.626	0.564	5.7e-59
TAIR|locus:2174557	333	MYB36 "myb domain protein 36"	0.389	0.393	0.824	7.3e-59
TAIR|locus:2169970	374	MYB68 "myb domain protein 68"	0.351	0.315	0.855	7.5e-57
TAIR|locus:2097335	310	MYB84 "myb domain protein 84"	0.351	0.380	0.864	1.2e-56
TAIR|locus:2137589	305	MYB87 "myb domain protein 87"	0.354	0.390	0.806	3.8e-56
TAIR|locus:2161820	320	MYB80 [Arabidopsis thaliana (t	0.354	0.371	0.65	2.9e-46
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.392	0.404	0.604	2.6e-45
TAIR|locus:2088957	317	TDF1 "DEFECTIVE IN MERISTEM DE	0.598	0.634	0.454	5e-44
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.639	0.663	0.415	2.8e-43

TAIR|locus:2057931 RAX2 "REGULATOR OF AXILLARY MERISTEMS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 119/168 (70%), Positives = 136/168 (80%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVK+GPWSPEED+KLK+YIEK GTGGNWIALP KAGL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA- 119
             YLRPNI+HG+FT+EED +I SLFASIGSRWS+IAA L GRTDNDIKNYWNTKLKKKL+A 
Sbjct:    61 YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query:   120 MAPPLSSQKK--STAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLIS 165
             MAPP        +++    PSS  H+  + SLLP    Y PS   L++
Sbjct:   121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLP----YNPSTNQLLT 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IMP

TAIR|locus:2181146 MYB37 "myb domain protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 132/234 (56%), Positives = 158/234 (67%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VK+GPWSPEEDSKL++YIEKYG GGNWI+ P KAGL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM-- 118
             YLRPNIKHG+F++EEDR+I SLFA+IGSRWSIIAA LPGRTDNDIKNYWNTKL+KKL+  
Sbjct:    61 YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query:   119 -------AMAPP-LS--SQ--KKSTAPPLIPSSHHHHQALVSLLPSQPYYTPSNKSLIS- 165
                    AMA P L+  SQ  K+ T+P  IPSS ++  A        P   P+ KSLIS 
Sbjct:   121 SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYA------ENPNQYPT-KSLISS 173

Query:   166 -NSFDSFEP-----ISSNTPLHLFDXXXXXXXXXXXXFSNNNSMQGYYPMKDNF 213
              N F++ +      I+ N P  L+             F  N++M   Y    +F
Sbjct:   174 INGFEAGDKQIISYINPNYPQDLYLSDSNNNTSNANGFLLNHNMCDQYKNHTSF 227

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 108/131 (82%), Positives = 117/131 (89%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEED KLK+YI+KYGTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
             YLRPNIKHG F++EEDR+I SL+ SIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL+  
Sbjct:    61 YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query:   121 APPLSSQKKST 131
                ++ Q   T
Sbjct:   121 QKQMNRQDSIT 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2169970 MYB68 "myb domain protein 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 101/118 (85%), Positives = 112/118 (94%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEED+KLK+YIE  GTGGNWIALPQK GL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
             YLRPNIKHG F++EED +IC+L+ +IGSRWSIIAAQLPGRTDNDIKNYWNT+LKKKL+
Sbjct:    61 YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2097335 MYB84 "myb domain protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 102/118 (86%), Positives = 111/118 (94%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEED+KLK YIE  GTGGNWIALPQK GLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
             YLRPNIKHG F++EE+ +ICSL+ +IGSRWSIIAAQLPGRTDNDIKNYWNT+LKKKL+
Sbjct:    61 YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLI 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2137589 MYB87 "myb domain protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 96/119 (80%), Positives = 109/119 (91%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VKKGPWS EED+ LK YIEK+GTG NWI+LPQ+ G+KRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119
             YLRPN+KHG FTDEED +ICSL+ +IGSRWSIIA+QLPGRTDNDIKNYWNT+LKKKL++
Sbjct:    61 YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLS 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2161820 MYB80 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 78/120 (65%), Positives = 99/120 (82%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR PCC+K NVK+G W+PEED+KL  YI ++GT  NW  +P+ AGL+RCGKSCRLRW N
Sbjct:     1 MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTN 59

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
             YLRP++KHG+F++ E+ +I    + +G+RWS+IAAQLPGRTDND+KNYWNTKLKKKL  M
Sbjct:    60 YLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKKLSGM 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 81/134 (60%), Positives = 103/134 (76%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR+PCCDK  +KKGPW+PEED KL  YIE++G G +W +LP+KAGL RCGKSCRLRW N
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLHRCGKSCRLRWTN 59

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
             YLRP+IK G+F  +E++ I  L A +G+RWS IA  LP RTDN+IKNYWNT LKK+L+ M
Sbjct:    60 YLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKM 119

Query:   121 A-PPLSSQKKSTAP 133
                P++ + K+  P
Sbjct:   120 GIDPVTHKPKNETP 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2088957 TDF1 "DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 94/207 (45%), Positives = 127/207 (61%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
             MGR PCCDK+NVKKG W+ EED+K+  Y+  +G G NW  +P+KAGL RCGKSCRLRW N
Sbjct:     1 MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVG-NWSLIPKKAGLNRCGKSCRLRWTN 59

Query:    61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM 120
             YLRP++KH  F+ +E+ LI     +IGSRWS IA +LPGRTDND+KN+WNTKLKKKLM M
Sbjct:    60 YLRPDLKHDSFSTQEEELIIECHRAIGSRWSSIARKLPGRTDNDVKNHWNTKLKKKLMKM 119

Query:   121 A-PPLSSQKKSTAPPLIPSSHHHHQALVSLLPSQ-PYYTPSNKS--LISNSFDSFEPISS 176
                P++ +  S       +   H  A     PS     T SN +  ++ N+  + E   +
Sbjct:   120 GIDPVTHKPVSQLLAEFRNISGHGNASFKTEPSNNSILTQSNSAWEMMRNTTTNHESYYT 179

Query:   177 NTPLHLFDXXXXXXXXXXXXFSNNNSM 203
             N+P+ +F             +S+ N +
Sbjct:   180 NSPM-MFTNSSEYQTTPFHFYSHPNHL 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048658 "tapetal layer development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 98/236 (41%), Positives = 135/236 (57%)

Query:     1 MGRAPCCDKAN-VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWL 59
             MGR+PCC+K N +KKGPW+PEED KL +YI  +G G NW  LP+ AGL+RCGKSCRLRW 
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYG-NWRTLPKNAGLQRCGKSCRLRWT 59

Query:    60 NYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA 119
             NYLRP+IK G F+ EE+  I  L + +G++WS IAA+LPGRTDN+IKNYWNT ++K+L+ 
Sbjct:    60 NYLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLK 119

Query:   120 MA-------PPLSSQKKST--APPLIPSSHHHHQA------LVSLLPS----QPYYTPSN 160
             M        P L     S+  +  +  SSHHHH        +  L+ S    QP   P  
Sbjct:   120 MGIDPVTHTPRLDLLDISSILSSSIYNSSHHHHHHHQQHMNMSRLMMSDGNHQPLVNPEI 179

Query:   161 KSLISNSFDSFEPISSNTPLHLFDXXXXXXXXXXXXFSNNNSMQGYYPMKDNFLTF 216
               L ++ F +    ++    +  +               N  +Q ++P+ D F  F
Sbjct:   180 LKLATSLFSNQNHPNNTHENNTVNQTEVNQYQTGYNMPGNEELQSWFPIMDQFTNF 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000629001 SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (342 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-45
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-43
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	9e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-12
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.001

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  160 bits (405), Expect = 3e-45
 Identities = 74/117 (63%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN 60
           MGR  CC K  ++KG WSPEED KL  +I KYG G  W ++P++AGL+RCGKSCRLRW+N
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           YLRP++K G F+ +E+ LI  L A +G+RWS IAAQLPGRTDN+IKN WN+ LKKKL
Sbjct: 60  YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  149 bits (378), Expect = 2e-43
 Identities = 67/114 (58%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 5   PCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
           PCC K  +K+GPW+ EED  L  +I+K G G  W +LP++AGL RCGKSCRLRW+NYLRP
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 65  NIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
           ++K G  T +E+ LI  L   +G+RWS+IA ++PGRTDN+IKNYWNT L+KKL+
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.6 bits (161), Expect = 3e-14
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62
          +GPW+PEED  L E ++K+G  GNW  + +     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGN-GNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 68.3 bits (167), Expect = 9e-13
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 11  NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE 70
             K G W   ED  LK  ++K G   NW  +         GK    RW N+L P +K   
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKN 74

Query: 71  FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWN 110
           +++EED  +  L   +G++WS IA     RT       + 
Sbjct: 75  WSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 17 WSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEED 76
          W+ EED KL + +EKYG     IA      L R   +CR RW   LRP    G +T EED
Sbjct: 1  WTEEEDEKLLKLVEKYGNDWKQIA----EELGRTPSACRDRWRRKLRPKRSRGPWTKEED 56

Query: 77 R 77
          +
Sbjct: 57 Q 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 68  HGEFTDEEDRLICSLFASIGSR-WSIIAAQLPGRTDNDIKNYWNTKL 113
            G +T EED L+       G+  WS IA  LPGRTDN  KN WN  L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          KG W+ EED  L E ++KYG   NW  + ++    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 69  GEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK 115
           GE+T+EED L+  L    G   W  IA +LPGRT    +  W   LK 
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 51.0 bits (123), Expect = 5e-09
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL 62
          PW+ EED  L E ++KYG   NW  + ++    R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 70  EFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKL 113
            +T+EED L+       G   W  IA +LPGRT    +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 71  FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +T+EED  +  L    G+ W  IA +L GRT +  ++ W  KL+ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 16 PWSPEEDSKLKEYIEKYGTGGNW--IALPQKAGLKRCGKSCRLRWLN 60
           W+ EED  L E +EKYG  GNW  I         R     + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGV-GNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.71
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.64
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.62
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.53
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.46
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.4
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.25
PLN03212	249	Transcription repressor MYB5; Provisional	99.22
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.09
PLN03091	459	hypothetical protein; Provisional	99.07
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.02
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.9
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.75
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.72
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.18
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.75
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.47
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.4
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.37
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.3
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.18
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.12
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.98
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.97
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.94
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.52
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.23
PRK13923	170	putative spore coat protein regulator protein YlbO	96.21
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.08
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.82
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.72
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.53
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.52
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.42
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.08
PRK13923	170	putative spore coat protein regulator protein YlbO	93.62
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.52
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.32
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.07
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	92.94
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	91.35
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.55
KOG2656	445	consensus DNA methyltransferase 1-associated prote	89.55
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.47
KOG1194	534	consensus Predicted DNA-binding protein, contains	86.58
KOG4329	445	consensus DNA-binding protein [General function pr	84.43
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	82.43

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=1.7e-36  Score=282.49  Aligned_cols=118  Identities=57%  Similarity=1.169  Sum_probs=113.3

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHH
Q 019787            3 RAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSL   82 (336)
Q Consensus         3 r~~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~l   82 (336)
                      |+|||+|+.+++++||+|||++|+++|++||. .+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~-~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel   92 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGE-GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL   92 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCc-ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence            67999999999999999999999999999997 59999999997799999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcC
Q 019787           83 FASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA  121 (336)
Q Consensus        83 v~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~  121 (336)
                      +.+||++|+.||++|||||+++|||||+.++++++.+..
T Consensus        93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999999999999877644

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=2e-36  Score=299.93  Aligned_cols=120  Identities=62%  Similarity=1.166  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHH
Q 019787            1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLIC   80 (336)
Q Consensus         1 mgr~~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll   80 (336)
                      |||++||+|+.++|++||+|||++|+++|++||. .+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~-~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL   79 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII   79 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCc-CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999998 599999999988999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcC
Q 019787           81 SLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA  121 (336)
Q Consensus        81 ~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~  121 (336)
                      +++++||++|.+||++|||||+++|||||+.++|++++...
T Consensus        80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999877543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.8e-33  Score=261.20  Aligned_cols=112  Identities=58%  Similarity=1.073  Sum_probs=107.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS   88 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~   88 (336)
                      |+.+.||+||+|||++|+++|++||. .+|..||+.+|++|++|+||+||.+||+|.+++|.||+|||++|++|+..+|+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~-~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGK-HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCC-CCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence            34456899999999999999999999 59999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcC
Q 019787           89 RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA  121 (336)
Q Consensus        89 kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~  121 (336)
                      +|+.||++|||||++.|||+|+..+|+++....
T Consensus        83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999998765

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.71  E-value=5.8e-18  Score=174.08  Aligned_cols=113  Identities=25%  Similarity=0.392  Sum_probs=102.2

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHH
Q 019787            1 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLIC   80 (336)
Q Consensus         1 mgr~~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll   80 (336)
                      +||......|.+++|+||++||.+|..+|++||. ++|-.|-+.++ +|+..|||+||.|.|....+++.||-.||+.|+
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~  424 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL  424 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCc-cchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence            4778888899999999999999999999999998 69999999999 999999999999999999999999999999999


Q ss_pred             HHHHHhCC-CHHHHHhhCCCCCHH---HHHHHHHHHhhh
Q 019787           81 SLFASIGS-RWSIIAAQLPGRTDN---DIKNYWNTKLKK  115 (336)
Q Consensus        81 ~lv~k~G~-kW~~IA~~lpGRT~~---qcknRw~~llkk  115 (336)
                      .+|++||. +|.+||.+||.||..   .||.|+..+..+
T Consensus       425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~r  463 (939)
T KOG0049|consen  425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLR  463 (939)
T ss_pred             HHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence            99999995 899999999999994   455555444333

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.64  E-value=2.2e-16  Score=162.55  Aligned_cols=106  Identities=25%  Similarity=0.491  Sum_probs=98.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh--CCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 019787           12 VKKGPWSPEEDSKLKEYIEKY--GTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-   88 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~ky--G~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-   88 (336)
                      +++..||.|||.+|+.+|...  |..++|.+|-..|+ +|+..|..-||...|+|.+++|+||++||.+|+.+|.+||. 
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            556889999999999999987  55579999999999 99999999999999999999999999999999999999997 


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           89 RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        89 kW~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      .|.+|-..+|||++.|||.||...|.+..+
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            699999999999999999999998877544

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.62  E-value=2e-16  Score=117.35  Aligned_cols=60  Identities=45%  Similarity=0.913  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHH
Q 019787           17 WSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLI   79 (336)
Q Consensus        17 WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~L   79 (336)
                      ||+|||++|+++|.+||.  +|..||..|+ .|++.+|+.||.+.|.|.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN--DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS---HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc--CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997  8999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.53  E-value=7.3e-15  Score=150.23  Aligned_cols=107  Identities=29%  Similarity=0.505  Sum_probs=101.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSR   89 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~k   89 (336)
                      -.++.|.|+..||+.|..+|+++|+ .+|..||..+. .|+++||+.||.++++|.+++..|+.|||++|+.+..++|.+
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~-nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhccc-ccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            4578899999999999999999999 68999999999 699999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           90 WSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        90 W~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      |+.||..+++||..+|.+||..++.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.7e-14  Score=145.92  Aligned_cols=106  Identities=29%  Similarity=0.575  Sum_probs=99.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRW   90 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW   90 (336)
                      -++.|.|+.-||+.|..+|.+||. ..|..|++.+. ..+++||+.||..+|+|.|++..|+.|||++|+.+.+.+...|
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~-nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGK-NQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcch-HHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            367789999999999999999998 59999999998 7899999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           91 SIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        91 ~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      ..||..| |||..||-.||..++-.....
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999999 999999999999999776654

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.40  E-value=2.7e-13  Score=140.28  Aligned_cols=103  Identities=23%  Similarity=0.549  Sum_probs=93.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC--CCCCCCCHHHHHHHHHHHH------
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN--IKHGEFTDEEDRLICSLFA------   84 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~--lkkg~WT~EED~~Ll~lv~------   84 (336)
                      .+|.||+||++.|..+|.++|.  .|..|+..|+  |.+..||+||+++..+.  .+++.||-||+++|+++|.      
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~  458 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN--DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREA  458 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc--cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999998  8999999998  99999999999999887  5899999999999999995      


Q ss_pred             -Hh-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           85 -SI-------------------GSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        85 -k~-------------------G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                       ++                   +-.|+.|++.+..|+..|||.+|..++......
T Consensus       459 ~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  459 LQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             hcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence             33                   125999999889999999999999999876554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=5.9e-13  Score=95.18  Aligned_cols=46  Identities=30%  Similarity=0.614  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 019787           68 HGEFTDEEDRLICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNTKL  113 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~k-W~~IA~~lp-GRT~~qcknRw~~ll  113 (336)
                      +++||+|||++|++++.+||.+ |..||..|+ +||..||++||..++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999998 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.25  E-value=1.1e-12  Score=93.71  Aligned_cols=48  Identities=44%  Similarity=0.868  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecccc
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      |++||+|||++|+++|.+||. .+|..||..|+.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-DNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998 359999999999999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.22  E-value=3.2e-12  Score=120.12  Aligned_cols=102  Identities=18%  Similarity=0.309  Sum_probs=78.8

Q ss_pred             ccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHHhhcCCCCC
Q 019787           48 KRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQL-PGRTDNDIKNYWNTKLKKKLMAMAPPLS  125 (336)
Q Consensus        48 gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~l-pGRT~~qcknRw~~llkkk~~~~~~~~s  125 (336)
                      .|++.-|.       ++.+++++||+|||++|+++|++||. +|..||+.+ ++||+.|||.||..+|++.+.+  .+|+
T Consensus        12 ~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k--gpWT   82 (249)
T PLN03212         12 KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR--GGIT   82 (249)
T ss_pred             CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc--CCCC
Confidence            55555453       35788999999999999999999995 899999988 6999999999999999988765  3556


Q ss_pred             CCCCCCCCCCCCCCCCccchhhccCCCCCCcCC
Q 019787          126 SQKKSTAPPLIPSSHHHHQALVSLLPSQPYYTP  158 (336)
Q Consensus       126 s~~~~~~p~~~~~~~~~~~~~~s~~~~~p~~~p  158 (336)
                      .++...+..........|..+...++.|+-..+
T Consensus        83 ~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqI  115 (249)
T PLN03212         83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI  115 (249)
T ss_pred             hHHHHHHHHHHHhccccHHHHHhhcCCCCHHHH
Confidence            665554444455566678888777777654433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=1.4e-11  Score=91.27  Aligned_cols=45  Identities=36%  Similarity=0.673  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           71 FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        71 WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ||+|||++|+++|++||.+|..||..|+.||..+|++||...|++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999669999999999996654

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=2.7e-11  Score=83.76  Aligned_cols=47  Identities=45%  Similarity=0.850  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           68 HGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 899999999999999999999998765

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.09  E-value=2.3e-10  Score=77.98  Aligned_cols=44  Identities=36%  Similarity=0.726  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 019787           70 EFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKL  113 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~ll  113 (336)
                      +||+|||+.|+.++.++| .+|..||..|++||..+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=99.07  E-value=3.1e-11  Score=121.16  Aligned_cols=89  Identities=19%  Similarity=0.318  Sum_probs=69.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 019787           64 PNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQL-PGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHH  141 (336)
Q Consensus        64 P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~l-pGRT~~qcknRw~~llkkk~~~~~~~~ss~~~~~~p~~~~~~~~  141 (336)
                      +.+++++||+|||++|+++|++||. +|..||+.+ ++|++.|||.||..+|++.+.+  .+|+.++...+.........
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkK--gpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR--GTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccC--CCCCHHHHHHHHHHHHHhCc
Confidence            5788999999999999999999996 799999988 5999999999999999988764  35666555444444444555


Q ss_pred             ccchhhccCCCCC
Q 019787          142 HHQALVSLLPSQP  154 (336)
Q Consensus       142 ~~~~~~s~~~~~p  154 (336)
                      .|..+...+++|.
T Consensus        88 KWskIAk~LPGRT  100 (459)
T PLN03091         88 RWSQIAAQLPGRT  100 (459)
T ss_pred             chHHHHHhcCCCC
Confidence            6666666666553

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.02  E-value=4.3e-11  Score=112.12  Aligned_cols=90  Identities=18%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHHhhcCCCCCCCCCCCCCCCCCCCCC
Q 019787           64 PNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLP-GRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHH  141 (336)
Q Consensus        64 P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lp-GRT~~qcknRw~~llkkk~~~~~~~~ss~~~~~~p~~~~~~~~  141 (336)
                      |.+.+|+||+|||++|+++|++||. +|..||+.++ +|++.+||-||..+|++.+++..  ++.++......+....+.
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~--fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGN--FSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCC--CCHHHHHHHHHHHHHHCc
Confidence            3455899999999999999999997 6999999998 99999999999999999988543  466666666666667777


Q ss_pred             ccchhhccCCCCCC
Q 019787          142 HHQALVSLLPSQPY  155 (336)
Q Consensus       142 ~~~~~~s~~~~~p~  155 (336)
                      .|..+...+|++.-
T Consensus        83 rWs~IA~~LPGRTD   96 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTD   96 (238)
T ss_pred             HHHHHHhhCCCcCH
Confidence            78888888888754

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.90  E-value=5.1e-10  Score=77.27  Aligned_cols=48  Identities=42%  Similarity=0.868  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      +++||++||++|..++.+||. .+|..||..++ +|++.+|+.||.+.+.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            468999999999999999994 39999999999 9999999999988654

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.75  E-value=9.9e-09  Score=106.86  Aligned_cols=115  Identities=24%  Similarity=0.337  Sum_probs=91.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHh----CCC----------CC--------ccccccccccccCcccccceeccccCCCC-CCC
Q 019787           13 KKGPWSPEEDSKLKEYIEKY----GTG----------GN--------WIALPQKAGLKRCGKSCRLRWLNYLRPNI-KHG   69 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~ky----G~~----------~n--------W~~IA~~l~~gRt~kQCr~RW~n~L~P~l-kkg   69 (336)
                      +-+.|++|||+.|...|..|    |-.          .+        |..|...++ -|+.+.....-++...|-- ++|
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~rg  385 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKRG  385 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccccC
Confidence            34889999999999999877    210          12        566777777 5998888774444444433 999


Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcCCCCCCCCC
Q 019787           70 EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKK  129 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~~~~ss~~~  129 (336)
                      .||+||++.|..++.++|+.|..|++.| ||.+.+|+.||+.+.+.........|+.++.
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe  444 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEE  444 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHH
Confidence            9999999999999999999999999999 9999999999999998876555555655543

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.72  E-value=3.9e-09  Score=71.86  Aligned_cols=44  Identities=43%  Similarity=0.872  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787           16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      +||+|||++|+.++.+||. .+|..||..++ +|++.+|+.||.+.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~-~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc-CCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            5999999999999999995 48999999998 79999999999764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.18  E-value=1.5e-07  Score=97.01  Aligned_cols=99  Identities=22%  Similarity=0.570  Sum_probs=86.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCC--CCCCCCCCHHHHHHHHHHHHHhC--
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP--NIKHGEFTDEEDRLICSLFASIG--   87 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P--~lkkg~WT~EED~~Ll~lv~k~G--   87 (336)
                      -.++.||+||++.|..++..+|.  .|..|...++  |-+..||+||.++..+  .+++++|+.||+.+|...+...-  
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~~--~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~  364 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHGG--SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLE  364 (512)
T ss_pred             hhhccCccccccccccccccccc--hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHH
Confidence            45789999999999999999997  8999988776  9999999999999988  78899999999999999887432  


Q ss_pred             ------CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           88 ------SRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        88 ------~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                            ..|..|+..++.|...+|+.++..+..
T Consensus       365 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~  397 (512)
T COG5147         365 AQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS  397 (512)
T ss_pred             HhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence                  269999999999999989877655543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.75  E-value=7.1e-05  Score=56.13  Aligned_cols=46  Identities=11%  Similarity=0.188  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 019787           68 HGEFTDEEDRLICSLFASIGS-RW---SIIAAQLP-GR-TDNDIKNYWNTKL  113 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~-kW---~~IA~~lp-GR-T~~qcknRw~~ll  113 (336)
                      +-.||+||...++++++.+|. +|   ..|+..|. .| |..||+.|...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999997 99   99999883 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.47  E-value=0.00025  Score=65.52  Aligned_cols=100  Identities=22%  Similarity=0.392  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCcccccccc--ccccCcccccceecccc-CCCC--------------------CCCCCC
Q 019787           16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKA--GLKRCGKSCRLRWLNYL-RPNI--------------------KHGEFT   72 (336)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l--~~gRt~kQCr~RW~n~L-~P~l--------------------kkg~WT   72 (336)
                      +|++++|-+|+.+|..- .  +-..|+..+  -..-|-+.+.+||+..| +|.+                    .+.+||
T Consensus         1 rW~~~DDl~Li~av~~~-~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS   77 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQT-N--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFS   77 (199)
T ss_pred             CCCchhhHHHHHHHHHh-c--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCC
Confidence            69999999999999883 3  455555443  34556677888997754 4433                    345899


Q ss_pred             HHHHHHHHHHHHHhCC---CHHHHHh-----hCCCCCHHHHHHHHHHHhhhHHh
Q 019787           73 DEEDRLICSLFASIGS---RWSIIAA-----QLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        73 ~EED~~Ll~lv~k~G~---kW~~IA~-----~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      .+|+++|.........   .+.+|=.     +-++||+.++.++|..+.+..+.
T Consensus        78 ~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   78 KEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            9999999998766544   4666632     33899999999999966555443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.40  E-value=7.8e-05  Score=55.90  Aligned_cols=49  Identities=10%  Similarity=0.269  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCc---ccccccccccc-Ccccccceecccc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNW---IALPQKAGLKR-CGKSCRLRWLNYL   62 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW---~~IA~~l~~gR-t~kQCr~RW~n~L   62 (336)
                      ++-.||+||.++++++|+.+|. ++|   ..|++.|...| |..||+.+.+.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~-g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGG-PDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999997 589   99999988666 9999998877653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.37  E-value=0.00034  Score=70.83  Aligned_cols=51  Identities=20%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           65 NIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      .+-...||.+|+-+|++++..|| .+|..||.++..||..+|+.+|..+.-.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            45566899999999999999999 6999999999889999999999766543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.30  E-value=0.00034  Score=62.63  Aligned_cols=52  Identities=25%  Similarity=0.401  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           67 KHGEFTDEEDRLICSLFASI---GS----RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~---G~----kW~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      +.+.||.|||.+|.+.|-+|   |.    -...++..| +||+.+|.-||+..+|+.+..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            46789999999999999988   43    388999999 999999999999999988764

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=0.00034  Score=72.20  Aligned_cols=54  Identities=28%  Similarity=0.479  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      ++.|.|+.-||++|-.+|.+||. .|++||..++-.|+.||++||...+.+.++.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~   59 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK   59 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence            46788999999999999999996 7999999999999999999999998877654

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.12  E-value=0.00045  Score=54.32  Aligned_cols=50  Identities=32%  Similarity=0.522  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhHHh
Q 019787           69 GEFTDEEDRLICSLFAS------IG--S------RWSIIAAQL----PGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k------~G--~------kW~~IA~~l----pGRT~~qcknRw~~llkkk~~  118 (336)
                      ..||.+|...|++++.+      ++  .      -|..||..|    ..||+.||++||..|.+.-..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999877      32  1      399999987    469999999999997766544

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.98  E-value=0.00026  Score=71.69  Aligned_cols=50  Identities=26%  Similarity=0.634  Sum_probs=46.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecccc
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      .+-...||++|+-+|+++++.||. +||..||..+| .|+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~-GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGF-GNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-CcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            456678999999999999999999 69999999999 999999999998865

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.97  E-value=0.00086  Score=68.59  Aligned_cols=46  Identities=13%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 019787           67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~l  112 (336)
                      ....||.+|..+|++.++.||..|.+||+++..||..||.-||-++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            3448999999999999999999999999999999999999999655

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.94  E-value=0.0011  Score=68.92  Aligned_cols=48  Identities=13%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKL  113 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~ll  113 (336)
                      ..+..||++|..+|+++++.||-+|.+||.++.+||..||--||..+=
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            345689999999999999999999999999999999999999886553

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.52  E-value=0.0044  Score=47.67  Aligned_cols=50  Identities=16%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------C-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHH
Q 019787           68 HGEFTDEEDRLICSLFASIG--------S-RWSIIAAQLP-GRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G--------~-kW~~IA~~lp-GRT~~qcknRw~~llkkk~  117 (336)
                      +.+||+|||++|++.|+++.        + =|.+++..-+ .+|-.+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45799999999999997652        2 1999999877 9999999999988777653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.23  E-value=0.0015  Score=66.95  Aligned_cols=46  Identities=30%  Similarity=0.606  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      ....||.+|-.+|.+.|+.||.  +|.+||.+++ .|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD--dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD--DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh--hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5668999999999999999997  9999999999 99999999999874

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.21  E-value=0.0057  Score=55.40  Aligned_cols=52  Identities=19%  Similarity=0.334  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGSR-------WSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~k-------W~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      .+.+.||.|||.+|.+.|-.|+..       ...++..| +||..+|..||+..++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            356789999999999999888642       56667778 89999999999999987755

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.08  E-value=0.0024  Score=66.51  Aligned_cols=49  Identities=27%  Similarity=0.619  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      ..--++.||.+|+.+|+++|++||.  +|.+||..++ .|+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d--dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD--DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc--cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3445788999999999999999998  9999999999 99999999999874

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.82  E-value=0.023  Score=56.12  Aligned_cols=48  Identities=19%  Similarity=0.394  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           67 KHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      --..|+.+|+-+|++.....| .+|..||.++..|+...||.||..+.-
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            344699999999999999999 599999999988999999999876543

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.72  E-value=0.024  Score=43.81  Aligned_cols=50  Identities=26%  Similarity=0.465  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----C--C----------CHHHHHhhC-----CCCCHHHHHHHHHHHhhhHH
Q 019787           68 HGEFTDEEDRLICSLFASI-----G--S----------RWSIIAAQL-----PGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~-----G--~----------kW~~IA~~l-----pGRT~~qcknRw~~llkkk~  117 (336)
                      +..||++|...|++++.++     |  .          -|..|+..|     +.||..+++.+|..+.....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            4579999999999999886     3  1          299999866     35999999999988876543

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.53  E-value=0.0027  Score=48.85  Aligned_cols=53  Identities=26%  Similarity=0.449  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-------CCccccccccccccCcccccceeccccCCCC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTG-------GNWIALPQKAGLKRCGKSCRLRWLNYLRPNI   66 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~-------~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~l   66 (336)
                      +.+||+|||+.|++.|..+...       .-|..+++.-++.+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            4579999999999999766211       2499998887768888899999999987654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.52  E-value=0.0035  Score=56.17  Aligned_cols=50  Identities=28%  Similarity=0.603  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---C-CC-CCccccccccccccCcccccceeccccC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKY---G-TG-GNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~ky---G-~~-~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      .+...||.|||.+|.+.|-+|   | +. ..+..|+..++  ||+.-|.-||..++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            356789999999999999999   2 10 15778888887  999999999988776

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.42  E-value=0.1  Score=58.93  Aligned_cols=101  Identities=18%  Similarity=0.354  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccCccccc----------------------------------------
Q 019787           16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCR----------------------------------------   55 (336)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr----------------------------------------   55 (336)
                      -|+.-+=..++.+..+||. .+-..||..+. +++...++                                        
T Consensus       826 ~w~~~~f~~f~~~~~~~gr-~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGR-NDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCH-hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888888888888899996 58889998886 56664433                                        


Q ss_pred             --------ceeccc-c-CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHh------------hCCCCCHHHHHHHHHHH
Q 019787           56 --------LRWLNY-L-RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAA------------QLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        56 --------~RW~n~-L-~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~------------~lpGRT~~qcknRw~~l  112 (336)
                              .-|... + -+.-++..+|+|||+.|+-.+.+|| .+|..|-.            ++..||+..+..|..+|
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                    222211 1 1333455699999999999999999 57999843            23589999999999999


Q ss_pred             hhhHHh
Q 019787          113 LKKKLM  118 (336)
Q Consensus       113 lkkk~~  118 (336)
                      ++-..+
T Consensus       984 ~~~~~~  989 (1033)
T PLN03142        984 IRLIEK  989 (1033)
T ss_pred             HHHHHH
Confidence            876544

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.08  E-value=0.0069  Score=47.54  Aligned_cols=47  Identities=23%  Similarity=0.556  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C---C-CC--Cccccccccc---cccCcccccceecc
Q 019787           14 KGPWSPEEDSKLKEYIEK--Y----G---T-GG--NWIALPQKAG---LKRCGKSCRLRWLN   60 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~k--y----G---~-~~--nW~~IA~~l~---~gRt~kQCr~RW~n   60 (336)
                      +..||.+|...|+.++..  +    +   . ..  -|..||..|.   -.|++.||+.||.+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~   62 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKN   62 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            357999999999999987  2    1   1 11  4999999874   57999999999977

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.62  E-value=0.012  Score=53.29  Aligned_cols=50  Identities=22%  Similarity=0.496  Sum_probs=37.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC-----CccccccccccccCcccccceeccccC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGG-----NWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~-----nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      .+...||.|||.+|.+.|-+|+..+     ....++..+.  |++..|..||.-+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            4677899999999999999996532     2444555555  999999999955443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.52  E-value=0.19  Score=43.05  Aligned_cols=53  Identities=26%  Similarity=0.455  Sum_probs=41.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHHHHHHHHhhhHH
Q 019787           65 NIKHGEFTDEEDRLICSLFASIGS----RWSIIAAQ------------LPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~~------------lpGRT~~qcknRw~~llkkk~  117 (336)
                      .-++..||++||+.|+-++.+||-    .|..|-..            +..||+..+..|..+|++-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            556778999999999999999996    79888643            247999999999999987543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.32  E-value=0.23  Score=48.84  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCCHHHHHhhC----CCCCHHHHHHHHHHHhhhHHhhc
Q 019787           68 HGEFTDEEDRLICSLFASI----------GSRWSIIAAQL----PGRTDNDIKNYWNTKLKKKLMAM  120 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~----------G~kW~~IA~~l----pGRT~~qcknRw~~llkkk~~~~  120 (336)
                      ...|+.+|-..||++..+.          +..|..||+.+    --||+.+|+++|..+.++.....
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k  120 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK  120 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999998653          23599999955    34999999999999988766543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.07  E-value=0.26  Score=39.07  Aligned_cols=47  Identities=32%  Similarity=0.570  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhC---CC--CCHHHHHHHHHHHhhhH
Q 019787           70 EFTDEEDRLICSLFASI---GS----------RWSIIAAQL---PG--RTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~---G~----------kW~~IA~~l---pG--RT~~qcknRw~~llkkk  116 (336)
                      .||+++++.|++++.+.   |+          .|..|+..|   +|  .|..||++||..+.+.-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998553   21          299999877   33  57899999998776553

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=92.94  E-value=0.025  Score=55.89  Aligned_cols=50  Identities=22%  Similarity=0.533  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      +-.--|++.|+.+|++.....|. ++|..||..+| .|+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGl-GNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGL-GNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCC-CcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            33456999999999999999999 69999999999 9999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=91.35  E-value=0.074  Score=41.07  Aligned_cols=48  Identities=29%  Similarity=0.424  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----CC----------CCCccccccccc----cccCcccccceeccc
Q 019787           14 KGPWSPEEDSKLKEYIEKY-----GT----------GGNWIALPQKAG----LKRCGKSCRLRWLNY   61 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~ky-----G~----------~~nW~~IA~~l~----~gRt~kQCr~RW~n~   61 (336)
                      +..||++|.+.|+++|.+|     |.          ..-|..|+..+.    ..|+..+++.+|.+.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nl   68 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNL   68 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            5679999999999999988     31          115999998863    368999999999874

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.55  E-value=0.59  Score=47.43  Aligned_cols=47  Identities=19%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      .+||.+|-+++.++...+|..+.-||..+|.|...|||.+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999765544

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=89.55  E-value=0.62  Score=47.33  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=64.8

Q ss_pred             CccccccccccccCcccccceeccccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 019787           37 NWIALPQKAGLKRCGKSCRLRWLNYLRPN-------------------------IKHGEFTDEEDRLICSLFASIGSRWS   91 (336)
Q Consensus        37 nW~~IA~~l~~gRt~kQCr~RW~n~L~P~-------------------------lkkg~WT~EED~~Ll~lv~k~G~kW~   91 (336)
                      .|.-+.=... .|...-...+|.+.-++.                         +....||.||-..|..+++.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            5655543333 566666677787763321                         12345999999999999999999999


Q ss_pred             HHHhh-----CCC-CCHHHHHHHHHHHhhhHHhhcCCC
Q 019787           92 IIAAQ-----LPG-RTDNDIKNYWNTKLKKKLMAMAPP  123 (336)
Q Consensus        92 ~IA~~-----lpG-RT~~qcknRw~~llkkk~~~~~~~  123 (336)
                      .||-.     ++. ||-.++|.||..+.++.++..++.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99976     554 999999999999999888776653

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.47  E-value=1.7  Score=30.93  Aligned_cols=42  Identities=29%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           73 DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        73 ~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      +++++.++.++--.|-.|.+||..+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888888888899999999999 99999999987766543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=86.58  E-value=1.7  Score=45.07  Aligned_cols=49  Identities=24%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      -...||.||--++-+++..||.+..+|-+.||.|+-..+...|....|.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3567999999999999999999999999999999999998887665544

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=84.43  E-value=12  Score=38.12  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHHHh
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAA-QLPGRTDNDIKNYWNTKL  113 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~-~lpGRT~~qcknRw~~ll  113 (336)
                      ..|+++|-+.+-+.++.||.++..|-+ .++.|+--.|-..|....
T Consensus       278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK  323 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK  323 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence            369999999999999999999999966 779999999987765443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=82.43  E-value=0.59  Score=47.41  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=50.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc--cCCCC------CCCCCCHHHHHHHH
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY--LRPNI------KHGEFTDEEDRLIC   80 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~--L~P~l------kkg~WT~EED~~Ll   80 (336)
                      .--+||.+|-+++.++...+|+  ++..|+..++ .|..+|++.+|.+-  .+|..      .+-|+..+|-..|.
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt--dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT--DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc--hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence            3457999999999999999999  8999999999 99999999988663  23321      24466666655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-22
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		5e-21
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		6e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-21
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		6e-15
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		6e-09
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-05
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTD 73
           KGPW+ EED K+ E ++KYGT   W  L  K    R GK CR RW N+L P +K   +T+
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTK-QW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74  EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           EEDR+I      +G+RW+ IA  LPGRTDN +KN+WN+ +K+K+
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNIKHGEFT 72
           KGPW+ EED ++ E+++KYG    W  + +   LK R GK CR RW N+L P +K   +T
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPK-RWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 73  DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +EEDR+I      +G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNIKHGEFT 72
           KGPW+ EED ++ + ++KYG    W  + +   LK R GK CR RW N+L P +K   +T
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73  DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNIKHGEFT 72
           KGPW+ EED ++ + ++KYG    W  + +   LK R GK CR RW N+L P +K   +T
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 73  DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNIKHGEFT 72
           KGPW+ EED ++ + ++KYG    W  + +   LK R GK CR RW N+L P +K   +T
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 73  DEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL--KRCGKSCRLRWLNYLRPNIKHGEF 71
           KGP++  ED  ++EY+++ G   NW   P+       R  K CR RW N+L P +    +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAW 57
Query: 72  TDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           T EED  I   +  +GS+WS+IA  +PGRTDN IKN WN+ + K++
Sbjct: 58  TPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 12  VKKGPWSPEEDSKLKEYIEKYGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLRPNIKHG 69
            KK  ++PEED  LK  + ++G+    IA   P      R  + CR RW NYL P+I H 
Sbjct: 9   AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-----NRNARQCRDRWKNYLAPSISHT 63
Query: 70  EFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNT 111
            +T EED L+       G +W+IIA   PGRTD  IKN W T
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTD 73
           K  ++ EED KL++ + +YG   +WI + Q   + R  + CR RW NY+ P ++   ++ 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYG-AKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSP 58
Query: 74  EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYW 109
           EED L+   +A  G +W+ I+  L  R+DN+I+N W
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 66  IKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +K   +T+EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 66  IKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +K   +T+EEDR++      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRP 64
          KGPW+ EED ++ E ++KYG    W  + +   LK R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGP-KRWSVIAKH--LKGRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          KGPW+ EED +L + ++KYG    W  + +     R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRP 64
          KGPW+ EED ++ + ++KYG    W  + +   LK R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGP-KRWSVIAKH--LKGRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	7e-61
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	9e-61
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-60
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	9e-54
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-52
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-26
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-25
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-20
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-16
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	8e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	7e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	5e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  189 bits (482), Expect = 7e-61
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 12  VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEF 71
           + KGPW+ EED ++ + ++KYG    W  + +     R GK CR RW N+L P +K   +
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 72  TDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           T+EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  189 bits (483), Expect = 9e-61
 Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 9   KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKH 68
              + KGPW+ EED ++ E+++KYG    W  + +     R GK CR RW N+L P +K 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPK-RWSDIAKHLKG-RIGKQCRERWHNHLNPEVKK 79

Query: 69  GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
             +T+EEDR+I      +G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 80  TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  187 bits (477), Expect = 6e-60
 Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 8   DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK 67
           +    KK  ++PEED  LK  + ++G+    IA        R  + CR RW NYL P+I 
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIA---ATFPNRNARQCRDRWKNYLAPSIS 61

Query: 68  HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQ 127
           H  +T EED L+       G +W+IIA   PGRTD  IKN W T   K  +     +   
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

Query: 128 KKSTAPPLIPSSHHHH 143
                       HHHH
Sbjct: 122 H-----------HHHH 126

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  185 bits (473), Expect = 3e-59
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTD 73
           KGP++  ED  ++EY+++ G   NW  +       R  K CR RW N+L P +    +T 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTP 59

Query: 74  EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAP 133
           EED  I   +  +GS+WS+IA  +PGRTDN IKN WN+ + K++   +          + 
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSK 119

Query: 134 P 134
            
Sbjct: 120 K 120

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  172 bits (439), Expect = 9e-54
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 11  NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE 70
            + KGPW+ EED ++ + ++KYG    W  + +     R GK CR RW N+L P +K   
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 112

Query: 71  FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           +T+EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  166 bits (423), Expect = 5e-52
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 14  KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTD 73
           K  ++ EED KL++ + +YG   +WI + Q     R  + CR RW NY+ P ++   ++ 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAK-DWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSP 58

Query: 74  EEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
           EED L+   +A  G +W+ I+  L  R+DN+I+N W    + + 
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 97.3 bits (243), Expect = 6e-26
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE 70
          + K G W   ED  LK  + KYG    W  +      ++  K C+ RW  +L P+IK  E
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKN-QWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 71 FTDEE 75
          ++   
Sbjct: 64 WSGPS 68

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 96.0 bits (240), Expect = 1e-25
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          + KGPW+ EED +L + ++KYG    W  + +     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.5 bits (202), Expect = 4e-20
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          + K  W+ EED KLK+ +E+ GT  +W  +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 11 NVKKGPWSPEEDSKLKEYIEKYGTGGNW--IA--LPQKAGLKRCGKSCRLRWLNYLRP 64
          +  K  W+ EED +L+  + ++G   +W  +A   P      R  + C+ RWL  L  
Sbjct: 5  SSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFPN-----RTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.8 bits (135), Expect = 9e-11
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLR 63
          K+  W  EED  L+  + KYG  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 8  DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK 67
            ++ KK  WS EE+ KL    +   T   W  +    G  R    C   +   L    +
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQ 58

Query: 68 HGE 70
             
Sbjct: 59 RDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 64  PNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
            + K  E++ EE+  +  L   + ++W  I A + GRT      ++   L K   
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQ 58

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIA-LPQKAGLKRCGKSCRLRWLNYLRPNI 66
          K+  W  EED  L+  + KYG  GNW   L       R     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 44.7 bits (106), Expect = 8e-07
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN-YLRPNI 66
              W+ +E+  L E +   G  GNW  +  +    +  + C   ++  +  P+ 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPSS 59

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----P 64
           + P+S  E   L + +EK GT G W  +   A      R     + +W   +      P
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISP 70

Query: 65 NIKHGEFTDEEDRL-ICSLFASIGSRWS 91
            + GE   +E    + +       +  
Sbjct: 71 QQRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKA---GLKRCGKSCRLRWLNYLR 63
          P+S  E   L E +E  GT G W  +  +A      R     + +W   + 
Sbjct: 2  PFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 13  KKGPWSPEEDSKLKEYIEKYGTGGNWIA---LPQKAGLKRCGKSCRLRWLNYLR-----P 64
            + P++  E   L E +E  GT G W        +    R     + +W   +      P
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAP 88

Query: 65  NIKHGEFTDEEDRL-ICSLFASIGSRWS 91
             + G    +E    + +  A      S
Sbjct: 89  QQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHG 69
            G ++PEE  KLKE   K+  G +W  +    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKH--GNDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 55  RLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK 114
                +  R N+    +T+EE           G  WS IA  +  +T +  KN++    K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF-NYK 61

Query: 115 KKL 117
           K+ 
Sbjct: 62  KRQ 64

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK---RCGKSCRLRWLNYLR 63
           + P+S  E   L E +E  GT G W  +  +A      R     + +W   + 
Sbjct: 16 IRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 17 WSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61
          W  +E+  L +  E  G  GNW  +    G  R  + CR  +L  
Sbjct: 12 WGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKT 55

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 8  DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61
           K       W+ +E   L E +E Y    +W  + +  G  R    C L +L  
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMY--KDDWNKVSEHVG-SRTQDECILHFLRL 62

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL---KRCGKSCRLRWLNYLRPNIKHG 69
           K  ++ EED  + + + K  T      L  +         G S R R+  YL   +++ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66

Query: 70 EFTDEEDRLI 79
             D+  +L+
Sbjct: 67 YEVDKFGKLV 76

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 16/68 (23%), Positives = 28/68 (41%)

Query: 63  RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAP 122
             +    ++T EE  L     A  G RW+ I+  +  RT   +K+Y     K K+     
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 123 PLSSQKKS 130
             +  +K+
Sbjct: 64  KETPNQKT 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.74
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.72
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.63
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.6
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.56
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.52
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.22
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.43
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.43
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.4
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.37
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.34
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.33
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.32
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.32
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.31
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.27
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.26
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.24
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.24
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.86
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.2
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.16
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.0
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.95
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.87
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.81
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.68
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.6
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.57
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.54
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.45
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.45
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.31
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.25
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.24
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.18
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.16
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.45
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.07
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.03
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.0
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.0
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.93
2crg_A	70	Metastasis associated protein MTA3; transcription	97.77
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.73
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.45
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.21
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.13
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.9
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.75
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.71
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.57
2crg_A	70	Metastasis associated protein MTA3; transcription	96.54
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.45
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.19
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.41
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.22
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.5
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.61
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.45
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	86.15
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	85.59

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.4e-33  Score=230.47  Aligned_cols=105  Identities=44%  Similarity=0.909  Sum_probs=99.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRW   90 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW   90 (336)
                      .+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++++||++|
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W   78 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW   78 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence            478999999999999999999998 58999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787           91 SIIAAQLPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        91 ~~IA~~lpGRT~~qcknRw~~llkkk~  117 (336)
                      +.||+.|||||+++|++||+.++++++
T Consensus        79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           79 AEIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=2.4e-33  Score=230.57  Aligned_cols=104  Identities=33%  Similarity=0.670  Sum_probs=99.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSII   93 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~I   93 (336)
                      |++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|..|
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I   78 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI   78 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence            689999999999999999997 59999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           94 AAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        94 A~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      |++|||||+++|++||..++++..+.
T Consensus        79 a~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           79 SKFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            99999999999999999999886553

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=6.9e-33  Score=234.15  Aligned_cols=106  Identities=40%  Similarity=0.706  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG   87 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G   87 (336)
                      .++.+++++||+|||++|+++|++||.  +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            578899999999999999999999998  8999999998 8999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787           88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk  116 (336)
                      .+|..||+.|||||+++|++||..++++.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998874

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=2.6e-32  Score=231.81  Aligned_cols=105  Identities=40%  Similarity=0.795  Sum_probs=100.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSII   93 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~I   93 (336)
                      ||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            799999999999999999997 59999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhhhHHhhc
Q 019787           94 AAQLPGRTDNDIKNYWNTKLKKKLMAM  120 (336)
Q Consensus        94 A~~lpGRT~~qcknRw~~llkkk~~~~  120 (336)
                      |++|||||+++|++||+.++++.+...
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~  106 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTN  106 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999887643

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=1.2e-32  Score=232.66  Aligned_cols=107  Identities=43%  Similarity=0.883  Sum_probs=102.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG   87 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G   87 (336)
                      .+|.+++++||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++++||
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            458999999999999999999999997 58999999998 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787           88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk  116 (336)
                      ++|+.||++|||||+++|++||+.+++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=1.5e-30  Score=227.08  Aligned_cols=108  Identities=43%  Similarity=0.875  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG   87 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G   87 (336)
                      .+|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||+.||.++|+|.+++++||+|||++|++++++||
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            468999999999999999999999997 58999999998 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787           88 SRWSIIAAQLPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        88 ~kW~~IA~~lpGRT~~qcknRw~~llkkk~  117 (336)
                      ++|+.||++|||||+++|++||+.++++++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999998753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=2e-29  Score=219.85  Aligned_cols=105  Identities=33%  Similarity=0.714  Sum_probs=62.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-C
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-R   89 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-k   89 (336)
                      .+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~   80 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR   80 (159)
T ss_dssp             ------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc
Confidence            368999999999999999999997 58999999998 99999999999999999999999999999999999999997 7


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787           90 WSIIAAQLPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        90 W~~IA~~lpGRT~~qcknRw~~llkkk~  117 (336)
                      |..||..|||||+.||++||..+|.+.+
T Consensus        81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~  108 (159)
T 1h89_C           81 WSVIAKHLKGRIGKQCRERWHNHLNPEV  108 (159)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence            9999999999999999999999887543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.3e-21  Score=149.52  Aligned_cols=67  Identities=30%  Similarity=0.666  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHH
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEED   76 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED   76 (336)
                      ..|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            468899999999999999999999996 49999999999 99999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=1.2e-20  Score=159.11  Aligned_cols=76  Identities=29%  Similarity=0.625  Sum_probs=52.0

Q ss_pred             cccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787           41 LPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        41 IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~  117 (336)
                      ||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|..||..|||||+.||++||..+|.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~   77 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV   77 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence            678888 99999999999999999999999999999999999999996 79999999999999999999999887543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.74  E-value=1.3e-18  Score=161.34  Aligned_cols=107  Identities=19%  Similarity=0.280  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CccccccccccccCcccccceeccccCCCCC-----------------
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGG----NWIALPQKAGLKRCGKSCRLRWLNYLRPNIK-----------------   67 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~----nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk-----------------   67 (336)
                      .+.++|++||+|||++|+++|+++|...    .|..||..|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4678999999999999999999998731    2999999998 99999999999999999997                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 019787           68 ------------HGEFTDEEDRLICSLFAS-I------------------------------------------------   86 (336)
Q Consensus        68 ------------kg~WT~EED~~Ll~lv~k-~------------------------------------------------   86 (336)
                                  +..||.|||-.|+..+++ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999999887 2                                                


Q ss_pred             -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787           87 -----GS----RWSIIAAQLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        87 -----G~----kW~~IA~~lpGRT~~qcknRw~~llkkk  116 (336)
                           |.    .|.+||+.+|+||..++|+||...|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999998776

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=2.5e-18  Score=133.35  Aligned_cols=59  Identities=24%  Similarity=0.322  Sum_probs=48.0

Q ss_pred             cceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           55 RLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        55 r~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      --||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||++|||+||+.+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999 9999999999987644

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.69  E-value=4.3e-17  Score=125.18  Aligned_cols=59  Identities=25%  Similarity=0.289  Sum_probs=55.9

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhc
Q 019787           62 LRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM  120 (336)
Q Consensus        62 L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~  120 (336)
                      ++|.+++++||+|||++|++++++||.+|..||++|||||+.|||+||+.++++..+..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g   61 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   61 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999987653

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=6.3e-17  Score=122.06  Aligned_cols=60  Identities=22%  Similarity=0.271  Sum_probs=56.7

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcC
Q 019787           61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMA  121 (336)
Q Consensus        61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~  121 (336)
                      +|+|.+++++||+|||++|++++++||.+|..||+ |+|||+.|||+||..+|++.+....
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999887543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=1.5e-16  Score=117.80  Aligned_cols=56  Identities=25%  Similarity=0.456  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      +|.+++++||+|||++|+++|++|| .+|..||++|+|||+.||++||..+|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999 5999999999999999999999999887543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=5.8e-17  Score=119.99  Aligned_cols=57  Identities=26%  Similarity=0.609  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCC
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK   67 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk   67 (336)
                      .|.+++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            58899999999999999999999996 49999999998 99999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.63  E-value=4.5e-17  Score=137.51  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=77.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceeccccC-----CCCCCC-CCCHHHHHH
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYLR-----PNIKHG-EFTDEEDRL   78 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L~-----P~lkkg-~WT~EED~~   78 (336)
                      .++..++++||+|||+.|+++|++||. ++|..|+..+.   .+||+.+|++||.+.|+     |.++++ +|++||+..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            357899999999999999999999998 59999999852   48999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCCHHH
Q 019787           79 ICSLFASIGSRWSI   92 (336)
Q Consensus        79 Ll~lv~k~G~kW~~   92 (336)
                      |+++...+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.62  E-value=9.6e-17  Score=115.60  Aligned_cols=52  Identities=42%  Similarity=0.926  Sum_probs=49.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN   65 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~   65 (336)
                      +++++||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            57999999999999999999997 58999999998 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=7.6e-16  Score=110.75  Aligned_cols=50  Identities=32%  Similarity=0.592  Sum_probs=46.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      +++++||+|||++|+++|++||. +|..||+.|+|||+.||++||..+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 999999999999999999999998864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.60  E-value=3.5e-16  Score=132.26  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=72.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceecccc-----CCCCCCCCCCHHH-HHHH
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPNIKHGEFTDEE-DRLI   79 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~P~lkkg~WT~EE-D~~L   79 (336)
                      +...++++||+|||+.|+++|++||. ++|..|+..+.   .+||+.+|++||.+.+     +|.++++.|+++| +..|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            35678999999999999999999998 59999998742   4899999999999998     8999999999999 8999


Q ss_pred             HHHHHHhCCC
Q 019787           80 CSLFASIGSR   89 (336)
Q Consensus        80 l~lv~k~G~k   89 (336)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=1.8e-16  Score=114.05  Aligned_cols=52  Identities=35%  Similarity=0.732  Sum_probs=47.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN   65 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~   65 (336)
                      +++++||+|||++|+++|.+||. .+|..||..|+ +|++.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            57899999999999999999997 58999999998 999999999999999984

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=1.4e-15  Score=109.44  Aligned_cols=50  Identities=34%  Similarity=0.707  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      +++++||+|||++|+++|++||. +|..||..|+|||+.||++||..+|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=2.8e-16  Score=119.60  Aligned_cols=64  Identities=23%  Similarity=0.439  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcccccccccc-ccCcccccceeccccCCCCCCCCCC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLRPNIKHGEFT   72 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~P~lkkg~WT   72 (336)
                      .++..++++||+|||++|+++|++||. .+|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            457889999999999999999999997 599999999975 8999999999999999999988764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=3e-15  Score=108.32  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 019787           67 KHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP--GRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp--GRT~~qcknRw~~llkk  115 (336)
                      ++++||+|||++|+++|++|| .+|..||..|+  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 59999999999  99999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.57  E-value=2.9e-15  Score=111.26  Aligned_cols=53  Identities=13%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      .|.+.+++||+|||++|+++|++|| .+|..||++|+|||+.||++||..+|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 6999999999999999999999988764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.56  E-value=4.2e-15  Score=113.05  Aligned_cols=59  Identities=29%  Similarity=0.338  Sum_probs=53.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHHhh
Q 019787           61 YLRPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP--GRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp--GRT~~qcknRw~~llkkk~~~  119 (336)
                      ...|..++++||+|||++|+++|++|| .+|..||..|+  |||+.||++||..+|++.+..
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            456778899999999999999999999 59999999999  999999999999999986543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3e-15  Score=114.03  Aligned_cols=57  Identities=23%  Similarity=0.402  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      .|.+++++||+|||++|+++|++|| .+|..||..|+|||+.||++||..+|++.+.+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            5788999999999999999999999 69999999999999999999999999876553

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.5e-15  Score=113.52  Aligned_cols=57  Identities=23%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIG------SRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G------~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      +|.+.+++||+|||++|++++++||      .+|..||++|+|||+.||++||..+|++..+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999      68999999999999999999999888876554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.52  E-value=1.7e-15  Score=114.38  Aligned_cols=56  Identities=30%  Similarity=0.562  Sum_probs=49.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccCcccccceeccccCCCCC
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPNIK   67 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~P~lk   67 (336)
                      ..+|++||+|||++|+++|++||. .+|..||+.++ .+||+.||++||.++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            467899999999999999999997 58999998764 489999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=2.2e-15  Score=111.87  Aligned_cols=55  Identities=18%  Similarity=0.495  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN   65 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~   65 (336)
                      .+++++++||+|||++|+++|++||. .+|..||+.|+ +||++||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            47899999999999999999999996 49999999999 899999999999999764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.52  E-value=1.5e-14  Score=109.12  Aligned_cols=51  Identities=27%  Similarity=0.443  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 019787           66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLP--GRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lp--GRT~~qcknRw~~llkkk  116 (336)
                      .++++||+|||++|+++|++||. +|..||+.++  |||+.||++||..++|..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            46889999999999999999995 8999999865  999999999999998864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.8e-16  Score=115.77  Aligned_cols=59  Identities=22%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE   70 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~   70 (336)
                      .+|.+++++||+|||++|+++|+.||.  +|..||. ++ +||++||+.||.++|+|.++++.
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            579999999999999999999999998  8999999 66 79999999999999999877653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=2.6e-14  Score=105.51  Aligned_cols=51  Identities=16%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP-GRTDNDIKNYWNTKL  113 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G-~kW~~IA~~lp-GRT~~qcknRw~~ll  113 (336)
                      +..+.+++||+|||++|+++|++|| .+|..||++|+ |||+.||++||..++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999 79999999999 999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.4e-15  Score=115.07  Aligned_cols=63  Identities=22%  Similarity=0.373  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCccccccccccccCcccccceeccccCCCCCCCCC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEF   71 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~----~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~W   71 (336)
                      .+|.+++++||+|||++|+++|.+||..    .+|..||+.|+ +||++||+.||.++|.+.++.|..
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            4799999999999999999999999941    38999999999 999999999999999988777653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.22  E-value=3.1e-15  Score=119.58  Aligned_cols=58  Identities=24%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           61 YLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      .++|.+++++||+|||++|++++.+||.+|..||..|+|||++||++||..++++...
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            5688999999999999999999999999999999999999999999999999887543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=1.2e-14  Score=107.37  Aligned_cols=52  Identities=25%  Similarity=0.496  Sum_probs=47.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecccc
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      ..+.+++||+|||++|+++|++||. .+|..||+.|+.+||++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999996 499999999987899999999999865

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.43  E-value=1.9e-14  Score=104.07  Aligned_cols=50  Identities=30%  Similarity=0.579  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCcccccccccc-ccCcccccceeccccC
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGL-KRCGKSCRLRWLNYLR   63 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~   63 (336)
                      ++++||+|||++|+++|++||. .+|..||..++. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999997 499999999875 6999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.43  E-value=1.6e-14  Score=110.83  Aligned_cols=58  Identities=17%  Similarity=0.355  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKH   68 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkk   68 (336)
                      ..|.+++++||+|||++|+++|++||.  +|..||..|+ +||+.||+.||..+|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            568999999999999999999999998  9999999998 999999999999999876665

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=2.8e-13  Score=104.98  Aligned_cols=52  Identities=13%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           64 PNIKHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        64 P~lkkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      +.+.+++||+|||++|++++++||    .+|.+||++|||||+.||++||..+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            457789999999999999999999    6899999999999999999999988763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.37  E-value=5.8e-14  Score=118.18  Aligned_cols=92  Identities=22%  Similarity=0.413  Sum_probs=68.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhcCCCCCCCCCCCCCCCCCCCCCc
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKSTAPPLIPSSHHH  142 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~~~~~ss~~~~~~p~~~~~~~~~  142 (336)
                      .+..++++||+|||++|+++|++||.+|..||..|+|||+.||+.||..+|.+.+..  .+|+..+...+..++......
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~--~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH--TPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC--SCCCHHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc--ccCCHHHHHHHHHHHHHHCcC
Confidence            456889999999999999999999999999999999999999999999998765433  245554443332333333345


Q ss_pred             cchhhccCCCCCCc
Q 019787          143 HQALVSLLPSQPYY  156 (336)
Q Consensus       143 ~~~~~s~~~~~p~~  156 (336)
                      |..++..++++...
T Consensus        84 W~~Ia~~l~gRt~~   97 (126)
T 3osg_A           84 WAIIAKFFPGRTDI   97 (126)
T ss_dssp             HHHHHTTSTTCCHH
T ss_pred             HHHHHHHcCCCCHH
Confidence            66666666655443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.34  E-value=6.7e-13  Score=104.10  Aligned_cols=48  Identities=15%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 019787           65 NIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~l  112 (336)
                      ...+++||+|||++|++++++||.+|.+||++|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999755

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-13  Score=105.08  Aligned_cols=58  Identities=24%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCC
Q 019787            5 PCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIK   67 (336)
Q Consensus         5 ~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lk   67 (336)
                      --...|.+++++||+|||++|+++|++||.  .|..||+.|  +||+.||+.||.. |....+
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            334679999999999999999999999998  699999999  7999999999985 544443

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.32  E-value=2e-12  Score=97.19  Aligned_cols=50  Identities=20%  Similarity=0.363  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGSRWSIIA---AQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~kW~~IA---~~lpGRT~~qcknRw~~llkk  115 (336)
                      .++.+||+|||+.|+++|++||.+|..|+   .++++||+.++++||+.+.|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            36789999999999999999999999999   577999999999999999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.32  E-value=3.4e-13  Score=114.04  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIG   87 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G   87 (336)
                      ..|.+++++||+|||++|+++|.+||.  .|..||..|+ +||+.+|+.||.++|++.+..++|+.+-    +......+
T Consensus        48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk  120 (131)
T 3zqc_A           48 LDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK  120 (131)
T ss_dssp             TSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence            458999999999999999999999997  8999999998 9999999999999999999999988763    11112224


Q ss_pred             CCHHHHHhhC
Q 019787           88 SRWSIIAAQL   97 (336)
Q Consensus        88 ~kW~~IA~~l   97 (336)
                      .+|..|++.|
T Consensus       121 ~~~~~i~k~~  130 (131)
T 3zqc_A          121 RKAADVPKKL  130 (131)
T ss_dssp             ----------
T ss_pred             hhhhhcchhc
Confidence            5688887765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.31  E-value=1.4e-12  Score=105.95  Aligned_cols=52  Identities=33%  Similarity=0.695  Sum_probs=48.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787           65 NIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk  116 (336)
                      .+++++||+|||++|+++|++||. +|..||..|||||+.||+.||..+|.+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   53 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   53 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence            368999999999999999999997 7999999999999999999999988654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.30  E-value=9e-13  Score=108.73  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=67.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc---cccCcccccceecccc-----CCCCCCCCCCHHHHHH
Q 019787            7 CDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG---LKRCGKSCRLRWLNYL-----RPNIKHGEFTDEEDRL   78 (336)
Q Consensus         7 c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~P~lkkg~WT~EED~~   78 (336)
                      -.++..++++||+|||+.|+++|++||. ++|..|+..+.   .+||+.+|++||.+.+     +|.++++.-+++|-..
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~   84 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN   84 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence            3467889999999999999999999998 59999999762   4899999999999988     7999999988888755


Q ss_pred             -HHHHHHHhC
Q 019787           79 -ICSLFASIG   87 (336)
Q Consensus        79 -Ll~lv~k~G   87 (336)
                       +++|...+|
T Consensus        85 rv~~~~~~~~   94 (105)
T 2aje_A           85 RVLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             777777655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.27  E-value=5.7e-12  Score=99.83  Aligned_cols=49  Identities=22%  Similarity=0.410  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHH
Q 019787           69 GEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk~  117 (336)
                      .+||+|||+.|+++|++||. +|+.|++.    |+|||+++||+||+.+++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999998 99999995    899999999999999998654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-12  Score=102.79  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787            5 PCCDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus         5 ~~c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      ..+.++...+++||+|||++|+++|++||.  +|..||..|+ +||+.||+.||.++
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A            9 LAKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             cCCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            355677888999999999999999999994  9999999999 89999999999997

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.26  E-value=2.3e-12  Score=102.09  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccc----cccccCcccccceecccc-----CCCCCCC-CCCHHHHHHHHHHHH
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQK----AGLKRCGKSCRLRWLNYL-----RPNIKHG-EFTDEEDRLICSLFA   84 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~----l~~gRt~kQCr~RW~n~L-----~P~lkkg-~WT~EED~~Ll~lv~   84 (336)
                      ++||+|||++|+++|++||. ++|..|+..    ++ +||+.+|++||.+.+     +|.++++ +..++....++.|..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998 599999985    55 899999999999987     6876665 577777788888775


Q ss_pred             H
Q 019787           85 S   85 (336)
Q Consensus        85 k   85 (336)
                      .
T Consensus        79 ~   79 (83)
T 2ckx_A           79 Y   79 (83)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.24  E-value=9.9e-12  Score=102.51  Aligned_cols=54  Identities=20%  Similarity=0.331  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQL----PGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~l----pGRT~~qcknRw~~llkkk  116 (336)
                      .+..++++||+|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+.+++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34678899999999999999999998 999999965    8999999999999999864

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=8e-12  Score=105.43  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 019787           61 YLRPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        61 ~L~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk  116 (336)
                      -+.+..++++||+|||+.|+++|++||. +|+.|++.    |+|||+++||+||+.+++..
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            3567788999999999999999999998 99999997    49999999999999999864

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.24  E-value=5.9e-12  Score=102.95  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHH
Q 019787           68 HGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkkk~  117 (336)
                      +++||+|||++|+++|++||. +|..||..|||||+.||+.||..+|.+.+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i   51 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL   51 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc
Confidence            589999999999999999996 89999999999999999999999887644

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.86  E-value=9.6e-13  Score=105.12  Aligned_cols=55  Identities=24%  Similarity=0.475  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCC
Q 019787            7 CDKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP   64 (336)
Q Consensus         7 c~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P   64 (336)
                      ...|.+++++||+|||++|+++|.+||.  +|..||..|+ +||+.||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            3468899999999999999999999998  7999999999 99999999999998763

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.22  E-value=5.8e-12  Score=116.92  Aligned_cols=55  Identities=31%  Similarity=0.515  Sum_probs=48.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           64 PNIKHGEFTDEEDRLICSLFASIGSR------WSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        64 P~lkkg~WT~EED~~Ll~lv~k~G~k------W~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      +.+++++||+|||++|+++|+++|++      |..||++|||||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            46788999999999999999999885      99999999999999999999999998754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.20  E-value=1.9e-11  Score=98.70  Aligned_cols=50  Identities=18%  Similarity=0.394  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 019787           67 KHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkkk  116 (336)
                      .+++||+|||++|++++.+||    .+|.+||+.|||||+.+|++||..++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999996    58999999999999999999999988764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.17  E-value=4.6e-12  Score=98.08  Aligned_cols=57  Identities=14%  Similarity=0.379  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceeccccC
Q 019787            6 CCDKANVKKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus         6 ~c~kp~lkKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      .-.++...+++||+|||++|+.+|++||.  ..+|..||..|+ +||.+||+.||...+.
T Consensus        10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999983  138999999999 9999999999998654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.16  E-value=3.9e-11  Score=101.37  Aligned_cols=55  Identities=24%  Similarity=0.380  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHH
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk~  117 (336)
                      ....++++||+|||+.|+++|++||. +|+.|++.    |++||+.+||+||+.+++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            44567899999999999999999998 99999996    489999999999999998653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=6e-10  Score=82.88  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      ..++||+||++++++++.+||.+|..||.+||+||..+|..+|....|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999976544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.95  E-value=1e-09  Score=88.70  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             cccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHHhhc
Q 019787           51 GKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQL-----PGRTDNDIKNYWNTKLKKKLMAM  120 (336)
Q Consensus        51 ~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~l-----pGRT~~qcknRw~~llkkk~~~~  120 (336)
                      +.=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.....
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35678899999976    89999999999999999999999999998     58999999999999999877754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.87  E-value=2.6e-09  Score=82.35  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=45.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           65 NIKHGEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ..+.+.||.|||++|.+++.+|+    .+|.+||++| |||..+|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45578899999999999999997    4799999998 99999999999988765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.81  E-value=4.5e-10  Score=90.69  Aligned_cols=49  Identities=14%  Similarity=0.398  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceecccc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      .+++||+|||++|++++++||.  ..+|..||+.++ |||..+|+.||...+
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3678999999999999999973  247999999999 999999999998854

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.68  E-value=1.5e-08  Score=93.47  Aligned_cols=49  Identities=16%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           67 KHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ..++||+||++++++++.+||.+|..||+.|++||..||+++|....++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999988776

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.60  E-value=4.7e-08  Score=75.67  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           68 HGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ...||++|+++|.+++..|+.    +|.+||..+||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            467999999999999999984    699999999999999999999988554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=1.8e-08  Score=74.90  Aligned_cols=51  Identities=12%  Similarity=0.167  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      ++......+||+||++++.+++.+||.  +|..||..|+ +|+..||.++|...
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            445567789999999999999999996  8999999998 99999999998654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.54  E-value=1.9e-08  Score=75.51  Aligned_cols=50  Identities=12%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCcccccc---ccccccCcccccceeccccC
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ---KAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~---~l~~gRt~kQCr~RW~n~L~   63 (336)
                      .-++.+||+|||+.|+++|++||.  .|..|+.   ++. +||....++||++...
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            347899999999999999999997  8999994   444 8999999999988543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.45  E-value=3.3e-08  Score=76.20  Aligned_cols=51  Identities=16%  Similarity=0.280  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceecccc
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      +..+++.||.|||++|.+++++|+.  ..+|..||+.+  +||..+|+.||....
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence            5567889999999999999999963  35899999997  499999999997754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.45  E-value=1.2e-07  Score=95.76  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      .+||+||-.++++++.+||.+|..||..+..||..|||++|....++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999755443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.31  E-value=6.5e-07  Score=66.36  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CC-CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 019787           68 HGEFTDEEDRLICSLFASI--------GS-RWSIIAA-QLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~--------G~-kW~~IA~-~lpGRT~~qcknRw~~llk  114 (336)
                      +.+||+|||++|++.|.++        |+ -|.++|+ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        54 3999999 7999999999999987664

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.25  E-value=1.2e-06  Score=70.27  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           70 EFTDEEDRLICSLFASIGS---RWSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~---kW~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      -||.|||+.||..+++-|.   .|..||+.|.+|+.+||++||+.|++-.-+
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            5999999999999999997   899999999899999999999999875443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=2.3e-06  Score=63.91  Aligned_cols=49  Identities=12%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAA-QLPGRTDNDIKNYWNT  111 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~-~lpGRT~~qcknRw~~  111 (336)
                      .|.+...+||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            467788899999999999999999999999999 5899999999988753

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.18  E-value=2.6e-07  Score=71.52  Aligned_cols=49  Identities=20%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      ...||+||+++|..++..|+.  .++|..||..++ +||..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            457999999999999999953  358999999999 8999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.16  E-value=3e-07  Score=68.19  Aligned_cols=48  Identities=21%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCCcccccc-ccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKY--------GTGGNWIALPQ-KAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~ky--------G~~~nW~~IA~-~l~~gRt~kQCr~RW~n~L~   63 (336)
                      +.+||+|||+.|++.|.+|        |. .-|+.+|+ .++ .+|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        44 37999999 676 9999999999999874

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.45  E-value=2.6e-07  Score=70.43  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           70 EFTDEEDRLICSLFASIGS---RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~---kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      -||.|||+.|+..+++-|.   .|..||+.| +||++||++||..|++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            4999999999999999998   799999999 99999999999988763

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.07  E-value=6.8e-07  Score=69.14  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 019787           68 HGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWN  110 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~  110 (336)
                      ...||.||+++|..++..|+.    +|.+||+.|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999985    7999999999999999998874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.03  E-value=1.3e-06  Score=80.52  Aligned_cols=51  Identities=24%  Similarity=0.414  Sum_probs=46.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      ......+||+||++++++++.+||.  +|..||..++ +||..||+.+|.++..
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3456789999999999999999997  8999999999 9999999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.00  E-value=1.1e-05  Score=77.45  Aligned_cols=102  Identities=18%  Similarity=0.251  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccc-------ee-----------------------------
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRL-------RW-----------------------------   58 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~-------RW-----------------------------   58 (336)
                      +.||..|...++.++.+||. .+|..||..|+ ++|...++.       ||                             
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999998 69999999998 777755431       11                             


Q ss_pred             ------------cc--ccCCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHH
Q 019787           59 ------------LN--YLRPNIKHGEFTDEEDRLICSLFASIGS----RWSIIAA------------QLPGRTDNDIKNY  108 (336)
Q Consensus        59 ------------~n--~L~P~lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~------------~lpGRT~~qcknR  108 (336)
                                  ..  ..-+.-+...||++||+.|+-++.+||-    .|..|..            ++..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                        00  0012234568999999999999999995    6999962            4468999999999


Q ss_pred             HHHHhhhHHh
Q 019787          109 WNTKLKKKLM  118 (336)
Q Consensus       109 w~~llkkk~~  118 (336)
                      ..+|++-..+
T Consensus       269 c~tLi~~iek  278 (304)
T 1ofc_X          269 CNTLITLIER  278 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999976443

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.00  E-value=1.7e-05  Score=63.95  Aligned_cols=55  Identities=18%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHHhhcCC
Q 019787           68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLP-----GRTDNDIKNYWNTKLKKKLMAMAP  122 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lp-----GRT~~qcknRw~~llkkk~~~~~~  122 (336)
                      ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++.+....+
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~   89 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV   89 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence            3689999999999999999999999998773     799999999999999988876654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.93  E-value=1.4e-06  Score=67.36  Aligned_cols=45  Identities=16%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--CCCCccccccccccccCcccccceec
Q 019787           14 KGPWSPEEDSKLKEYIEKYG--TGGNWIALPQKAGLKRCGKSCRLRWL   59 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG--~~~nW~~IA~~l~~gRt~kQCr~RW~   59 (336)
                      .++||.||+++|..++++|.  +..+|.+||+.+| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            56799999999999999994  3468999999999 899999999885

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.77  E-value=4.9e-05  Score=57.90  Aligned_cols=43  Identities=21%  Similarity=0.310  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHH
Q 019787           68 HGEFTDEEDRLICSLFASIGSRWSIIAA-QLPGRTDNDIKNYWN  110 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~-~lpGRT~~qcknRw~  110 (336)
                      ..+||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4579999999999999999999999999 689999999998886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.73  E-value=4.5e-05  Score=61.33  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 019787           68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~l  112 (336)
                      ...||+||.+++.+++..||.+|..||..||+||..+|...|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            457999999999999999999999999999999999999887644

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=4.4e-05  Score=56.94  Aligned_cols=50  Identities=10%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCcccccc-ccccccCcccccceecc
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ-KAGLKRCGKSCRLRWLN   60 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~-~l~~gRt~kQCr~RW~n   60 (336)
                      ..|.++...||+||-++..+++.+||.  +|..|+. .++ +|+..+|.+-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            468888999999999999999999997  8999998 577 8999999876643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.21  E-value=0.0003  Score=54.84  Aligned_cols=50  Identities=16%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhC----CCCCHHHHHHHHHHHhhhHH
Q 019787           68 HGEFTDEEDRLICSLFASIGS----------RWSIIAAQL----PGRTDNDIKNYWNTKLKKKL  117 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~----------kW~~IA~~l----pGRT~~qcknRw~~llkkk~  117 (336)
                      ...||.+|-.+||+++.....          .|..||..|    -.||+.||+.+|..|.+.-.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999976321          499999987    26999999999998887643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.13  E-value=0.00011  Score=59.28  Aligned_cols=49  Identities=12%  Similarity=0.358  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc----cccCcccccceecccc
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG----LKRCGKSCRLRWLNYL   62 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~----~gRt~kQCr~RW~n~L   62 (336)
                      +...+||.||++.|++|+++||.  .|..|+..+.    .+||.-+.+.||....
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34489999999999999999998  8999999983    3799999999997643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.90  E-value=0.00028  Score=71.49  Aligned_cols=48  Identities=23%  Similarity=0.428  Sum_probs=43.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787           11 NVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        11 ~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      .....+||.||-+++++++.+||.  +|..||..++ +|+..||+..|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345789999999999999999997  9999999999 89999999988654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.75  E-value=0.00072  Score=54.25  Aligned_cols=47  Identities=17%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CCCccccccccccccCcccccceecc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGT-GGNWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~-~~nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      +--.||.|||..|+...++-|. ..-|..||+.++ +|++.|+++|++.
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            3346999999999999999987 458999999998 8999999999977

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.71  E-value=0.004  Score=55.50  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHh--hC------------CCCCHHHHHHHHHHHhhhH
Q 019787           70 EFTDEEDRLICSLFASIG-SRWSIIAA--QL------------PGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G-~kW~~IA~--~l------------pGRT~~qcknRw~~llkkk  116 (336)
                      .||++||..|+..+.+|| .+|..|-.  .|            ..+++..+..|...||+-.
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            599999999999999999 79999975  21            1245678999988777643

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.57  E-value=0.0095  Score=58.58  Aligned_cols=106  Identities=20%  Similarity=0.300  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCccccc---------------------------------------
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCR---------------------------------------   55 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr---------------------------------------   55 (336)
                      +-||.-|=..++.++.+||. .+-..||..|+.+.+...++                                       
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999998 68999999996455553332                                       


Q ss_pred             ---------ceeccc-c--CCC-CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHH
Q 019787           56 ---------LRWLNY-L--RPN-IKHGEFTDEEDRLICSLFASIGS----RWSIIAAQ------------LPGRTDNDIK  106 (336)
Q Consensus        56 ---------~RW~n~-L--~P~-lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~~------------lpGRT~~qck  106 (336)
                               .-|... +  .+. -+...||++||+.||-++.+||-    .|..|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                     111110 0  111 13457999999999999999994    69998432            4579999999


Q ss_pred             HHHHHHhhhHHhhcC
Q 019787          107 NYWNTKLKKKLMAMA  121 (336)
Q Consensus       107 nRw~~llkkk~~~~~  121 (336)
                      .|...|++-..+...
T Consensus       283 rRc~tLi~~IeKE~~  297 (374)
T 2y9y_A          283 RRGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999987666544

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.54  E-value=0.00064  Score=51.65  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCcccccc-ccccccCcccccceec
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQ-KAGLKRCGKSCRLRWL   59 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~-~l~~gRt~kQCr~RW~   59 (336)
                      ...+||+||-++..+++.+||.  +|..|+. .++ +|+..+|.+-|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4567999999999999999997  8999998 577 999999987664

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.45  E-value=0.00071  Score=54.28  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecc
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      ...||+||.+++.++...||.  +|..||..++ +|+..+|.+-|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            467999999999999999997  8999999998 9999999886643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.19  E-value=0.0008  Score=51.27  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CCCccccccccccccCcccccceecccc
Q 019787           15 GPWSPEEDSKLKEYIEKYGT-GGNWIALPQKAGLKRCGKSCRLRWLNYL   62 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~-~~nW~~IA~~l~~gRt~kQCr~RW~n~L   62 (336)
                      -.||.|||..|+..+++-|. ..-|..||..++  |++.|+..|+...+
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLM   61 (70)
Confidence            46999999999999999887 347999999984  99999999998743

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.41  E-value=0.039  Score=41.45  Aligned_cols=47  Identities=11%  Similarity=0.015  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 019787           66 IKHGEFTDEEDRLICSLFASIGSR---WSIIAAQL--PGRTDNDIKNYWNTK  112 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~k---W~~IA~~l--pGRT~~qcknRw~~l  112 (336)
                      ..+-.||+|..+..++++.++|..   |..|.+.|  +|.|..+|+.|.+.+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345679999999999999999964   78998876  799999999987654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.22  E-value=0.0019  Score=50.31  Aligned_cols=49  Identities=18%  Similarity=0.436  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC------C--CCCccccccccc---cccCcccccceeccc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYG------T--GGNWIALPQKAG---LKRCGKSCRLRWLNY   61 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG------~--~~nW~~IA~~l~---~gRt~kQCr~RW~n~   61 (336)
                      +...||.+|-..|+++.....      .  ...|..||..|.   -.|++.||+.+|.+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL   62 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL   62 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            457799999999999997531      1  126999999965   469999999999774

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.50  E-value=0.0097  Score=47.85  Aligned_cols=48  Identities=13%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccc----cccCcccccceeccc
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG----LKRCGKSCRLRWLNY   61 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~----~gRt~kQCr~RW~n~   61 (336)
                      ++...||.||...|++++++|+.  .|..|+....    ..|+.-+.++||...
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998  8999998874    268888888888764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.61  E-value=0.11  Score=49.85  Aligned_cols=48  Identities=15%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           68 HGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      -+.||..+...++.++.+||. +|..||..|+|+|...|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            347999999999999999997 899999999999999998776666554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.45  E-value=0.17  Score=44.80  Aligned_cols=51  Identities=20%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCHHHHHh--hCCCCCHHHHHHHHHHHhhhH
Q 019787           66 IKHGEFTDEEDRLICSLFASIG---SRWSIIAA--QLPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G---~kW~~IA~--~lpGRT~~qcknRw~~llkkk  116 (336)
                      -....||+.|-+.|+.++.+||   .+|..|+.  .|.+||...|+..+..++..-
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            3456899999999999999999   48999986  478999999998777666543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=86.15  E-value=0.3  Score=36.53  Aligned_cols=50  Identities=10%  Similarity=0.047  Sum_probs=36.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-Cccccccccc-cccCcccccceec
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTGG-NWIALPQKAG-LKRCGKSCRLRWL   59 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~~-nW~~IA~~l~-~gRt~kQCr~RW~   59 (336)
                      +...+-.||+|..+++.++|.+.|... -++.|.+.|+ .+.|..+++-+.+
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ   54 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ   54 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence            345677899999999999999999521 3678877776 3556666655443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=85.59  E-value=0.74  Score=43.29  Aligned_cols=29  Identities=38%  Similarity=0.738  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccc
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQK   44 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~   44 (336)
                      ..|+.+||.+|+..|.+||. ++|..|..-
T Consensus       169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT-TCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcC-CcHHHHhcC
Confidence            46999999999999999999 699999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-17
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-08
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-10
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-05
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-06
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	8e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-07
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-04
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	9e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (185), Expect = 2e-18
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          + KGPW+ EED +L + ++KYG    W  + +     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 66  IKHGEFTDEEDRLICSLFASIG-SRWSIIAAQLPGRTDNDIKNYWNTKLK 114
           +  G +T EED+ +  L    G  RWS+IA  L GR     +  W+  L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRP 64
          K  W+ EED KLK+ +E+ GT  +W  +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 69  GEFTDEEDRLICSLFASIGSR-WSIIAAQLPGRTDNDIKNYWNTKLK 114
             +T EED  +  L    G+  W +IA  LP RTD   ++ W   L 
Sbjct: 2   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.3 bits (177), Expect = 7e-17
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHG 69
          K  ++ EED  + + + K  T       +  +         G S R R+  YL   +++ 
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 70 EFTDEEDRLICSLFASI 86
             D+  +L+     ++
Sbjct: 60 YEVDKFGKLVRDDDGNL 76

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (128), Expect = 5e-10
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 69  GEFTDEEDRLICSLFASIGSR------WSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
             FTDEED  I  +     +R      +  I+  +P  T N I++ +   L K+L
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (161), Expect = 6e-15
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLR 63
          K+  W  EED  L+  + KYG  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 67  KHGEFTDEEDRLICSLFASIG-SRWSIIAAQLP--GRTDNDIKNYWNTKLK 114
           K   +  EED+ + S     G   WS I        RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 2e-14
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYG-EGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 67  KHGEFTDEEDRLICSLFASIGS-RWSIIAAQ--LPGRTDNDIKNYWNTKLKKKL 117
           K  ++T EE   + +     G   W+ I+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 64.7 bits (157), Expect = 4e-14
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKA---GLKRCGKSCRLRWLNYLR-----PNIK 67
          P+S  E   L E +E  G  G W  +  +A      R     + +W   +      P  +
Sbjct: 2  PFSVAEVEALVEAVEHLG-TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 68 HGEFTDEEDRLICSLFASIGSRWS 91
           GE   ++         +  + WS
Sbjct: 61 RGEPVPQDLLD---RVLAAHAYWS 81

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (145), Expect = 8e-13
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 69  GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK 114
             +T+EEDR+I      +G+RW+ IA  LPGRTDN IKN+WN+ ++
Sbjct: 2   TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR 63
          K  W+ EED  + +  ++ G     IA   K    R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIA---KLLPGRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTD 73
             W+ EE    ++ + K+G     I+   K    R     +     Y +  +K G   +
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTKIS---KLIGSRTVLQVKSYARQYFKNKVKCGLDKE 58

Query: 74 EEDR 77
            ++
Sbjct: 59 TPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 8e-10
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 71  FTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAMAPPLSSQKKS 130
           +T EE  L     A  G RW+ I+  +  RT   +K+Y     K K+       +  +K+
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 8  DKANVKKGPWSPEEDSKLKEYIEKYGTG--GNWIALPQKAGLKRCGKSCRLRW 58
          ++A   + PW+  +   L+  +++Y  G    W  + +     +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 63  RPNIKHGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYW 109
           R       +T  + +L+              W  IA  +P ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 69  GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115
             +T EE  L        G  +  I+  +  ++   +KN++    ++
Sbjct: 6   ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLR---PNIK 67
              W+ EE     + I KYG     I+  +       +     +  ++NY R    +  
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIG-----NKSVVQVKNFFVNYRRRFNIDEV 58

Query: 68 HGEFTDE 74
            E+  E
Sbjct: 59 LQEWEAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 4e-10
 Identities = 8/53 (15%), Positives = 19/53 (35%)

Query: 63  RPNIKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK 115
           +       ++++E       F      + +IA+ L  +T  +   Y+    K 
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 13 KKGPWSPEEDSKLKEYIEKYGTGGNWIA--LPQKAGLKRCGKSCRLRWLNYLR 63
              WS +E    +E   ++      IA  L +     +    C L +    +
Sbjct: 16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLER-----KTVAECVLYYYLTKK 63

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 17 WSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY 61
          W+ +E+  L E +   G  GNW  +  +    +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.2 bits (117), Expect = 9e-09
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 16 PWSPEEDSKLKEYIEKYGTGG-NWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGE 70
          PWS +E+   +  +  Y     +  A   +A   R  +  +  +   L  +IK+ E
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKYIE 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 71  FTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWNTKLKK 115
           ++ +E++      A        RW+ +A  + GRT  ++K ++   ++ 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 52

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 36  GNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLI---CSLFASIGSRWSI 92
           G   +    A  K    +             K   +T E DR+I   C    +    +S+
Sbjct: 1   GPSGSSGAGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSV 60

Query: 93  IAAQLPGRTDNDIKNYWNTKLK 114
           I+ QL  +T  ++ + +   ++
Sbjct: 61  ISQQLGNKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.47
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.41
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.38
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.35
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.33
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.33
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.21
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.19
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.18
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.15
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.09
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.8
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.8
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.61
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.24
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.23
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.88
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.6
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.38
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.14
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.22
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.16
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	91.68
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	91.62
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.73
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.66

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=4e-20  Score=145.74  Aligned_cols=71  Identities=20%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC----CCccccccccccccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTG----GNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFAS   85 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~----~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k   85 (336)
                      |++||+|||++|+++|.+||..    .+|..||..|+ +||++|||.||.++|+|.+++++||++||++|+.+...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999862    24999999998 99999999999999999999999999999998865543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.7e-17  Score=115.61  Aligned_cols=47  Identities=49%  Similarity=0.916  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      +++||+|||++|+++|++||++|+.||++|||||++|||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.8e-18  Score=121.35  Aligned_cols=52  Identities=42%  Similarity=0.926  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN   65 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~   65 (336)
                      ++||+||+|||++|+++|++||. .+|..||+.|+ +||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            57999999999999999999997 48999999998 999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.7e-16  Score=113.58  Aligned_cols=50  Identities=34%  Similarity=0.707  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      |.+|+||+|||++|+++|++||. +|..||+.|+|||+.||++||..+|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999994 899999999999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.3e-17  Score=115.17  Aligned_cols=50  Identities=36%  Similarity=0.757  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPN   65 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~   65 (336)
                      |++||+|||++|+++|.+||. .+|..||..|+ +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            688999999999999999997 58999999998 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3.4e-15  Score=105.69  Aligned_cols=48  Identities=33%  Similarity=0.605  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           68 HGEFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      +++||+|||++|+++|++||. +|..||.+|+|||+.||++||..+|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            578999999999999999995 899999999999999999999998864

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=5.5e-16  Score=120.68  Aligned_cols=74  Identities=24%  Similarity=0.432  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcccccccc---ccccCcccccceecccc-----CCCCCCCCCCHHHHHHHHHHHHHh
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKA---GLKRCGKSCRLRWLNYL-----RPNIKHGEFTDEEDRLICSLFASI   86 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l---~~gRt~kQCr~RW~n~L-----~P~lkkg~WT~EED~~Ll~lv~k~   86 (336)
                      ++||+|||++|+++|.+||. ++|..|+..+   .++||+.||++||.++|     .|..+++.|+++|   |+..|.+.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~   76 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHH
Confidence            48999999999999999998 5999998753   34899999999999988     5778899999887   55555556


Q ss_pred             CCCHHH
Q 019787           87 GSRWSI   92 (336)
Q Consensus        87 G~kW~~   92 (336)
                      +.+|++
T Consensus        77 ~~~wsq   82 (83)
T d2ckxa1          77 HAYWSQ   82 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            667764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.1e-14  Score=101.59  Aligned_cols=48  Identities=31%  Similarity=0.405  Sum_probs=43.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC--CCCCHHHHHHHHHHHhh
Q 019787           67 KHGEFTDEEDRLICSLFASIGS-RWSIIAAQL--PGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~l--pGRT~~qcknRw~~llk  114 (336)
                      ++++||+|||++|+++|++||. +|..||..+  .+||+.||++||+.+.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999996 899999975  59999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.6e-14  Score=104.20  Aligned_cols=52  Identities=29%  Similarity=0.382  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHHhhc
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMAM  120 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkkk~~~~  120 (336)
                      ..||+|||.+|++++.+||.+|..||++||+||+.||++||..++++.....
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999999999999998866543

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.3e-14  Score=101.85  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 019787           67 KHGEFTDEEDRLICSLFASIGS-RWSIIAAQ--LPGRTDNDIKNYWNTKLKKK  116 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~-kW~~IA~~--lpGRT~~qcknRw~~llkkk  116 (336)
                      ++.+||+|||++|+++|++||. +|..||+.  |++||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            4679999999999999999995 89999997  56999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.6e-15  Score=105.59  Aligned_cols=54  Identities=31%  Similarity=0.600  Sum_probs=48.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccCcccccceeccccCCCCC
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG-LKRCGKSCRLRWLNYLRPNIK   67 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~P~lk   67 (336)
                      ++++||+|||++|+++|++||. .+|..||..++ .+|++.||++||.++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-ChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999997 58999998742 489999999999999988764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.9e-14  Score=110.49  Aligned_cols=52  Identities=31%  Similarity=0.485  Sum_probs=48.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHHhh
Q 019787           68 HGEFTDEEDRLICSLFASIGSR------WSIIAAQLPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~k------W~~IA~~lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      ++.||+|||++|+++|++||.+      |..||+.|||||+.|||+||+..|.+.+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5789999999999999999974      999999999999999999999999998754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-13  Score=98.66  Aligned_cols=50  Identities=16%  Similarity=0.305  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHH
Q 019787           63 RPNIKHGEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        63 ~P~lkkg~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~~l  112 (336)
                      .+...+++||+|||++|+++|.+||.    +|..||..|||||+.||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999996    599999999999999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3.8e-14  Score=99.25  Aligned_cols=47  Identities=21%  Similarity=0.509  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      |++||+|||++|+++|++||.  +|..||..|+ +||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN--RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS--CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh--HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999998  8999999998 9999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-13  Score=94.13  Aligned_cols=43  Identities=16%  Similarity=0.306  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHH
Q 019787           70 EFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWNTK  112 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~~l  112 (336)
                      .||+|||++|+++|++||. +|..||.+|++||+.||+.||...
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4999999999999999995 799999999999999999999865

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.9e-14  Score=100.08  Aligned_cols=49  Identities=31%  Similarity=0.538  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCccccccccc-cccCcccccceecccc
Q 019787           13 KKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG-LKRCGKSCRLRWLNYL   62 (336)
Q Consensus        13 kKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~-~gRt~kQCr~RW~n~L   62 (336)
                      ++++||+|||++|+++|.+||. ++|..||..++ .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~-~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            5889999999999999999998 59999998753 4899999999998854

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2e-12  Score=102.70  Aligned_cols=71  Identities=18%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             ccCcccccceeccccCCCCCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhCCCCCHHHHHHHHHHHhhhHHh
Q 019787           48 KRCGKSCRLRWLNYLRPNIKHGEFTDEEDRLICSLFASIGSR---WSIIAAQLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        48 gRt~kQCr~RW~n~L~P~lkkg~WT~EED~~Ll~lv~k~G~k---W~~IA~~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      ..+..++..++.+..++......||.|||++||+.++++|.+   |..||+.|+|||++||++||..|++..-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            566777888888888888888899999999999999999987   99999999999999999999999887654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.2e-14  Score=97.73  Aligned_cols=44  Identities=23%  Similarity=0.636  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787           16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      .||+|||++|+++|++||. ++|..||+.|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~-~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC-ccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            4999999999999999997 59999999999 99999999999875

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=1.5e-12  Score=95.90  Aligned_cols=47  Identities=19%  Similarity=0.440  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           69 GEFTDEEDRLICSLFASIGS----RWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~----kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      .+||+|||++|++++++||.    +|.+||.+|||||+.||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999996    499999999999999999999877654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.5e-13  Score=97.27  Aligned_cols=52  Identities=17%  Similarity=0.479  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCC--CccccccccccccCcccccceecc
Q 019787            8 DKANVKKGPWSPEEDSKLKEYIEKYGTGG--NWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus         8 ~kp~lkKg~WT~EEDe~L~~lV~kyG~~~--nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      .++...+++||+|||++|+++|.+||...  +|..||..|+ +||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            57888999999999999999999998732  5999999999 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4e-13  Score=99.06  Aligned_cols=58  Identities=19%  Similarity=0.386  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccCCCCCCCCCCHHH
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFTDEE   75 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~P~lkkg~WT~EE   75 (336)
                      ..||+|||++|+++|.+||.  +|..||..|+ +||+.||+.||.+++.+..+.+.+.+.+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhcc--hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            57999999999999999996  9999999999 9999999999999998887777766544

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=1.5e-11  Score=95.20  Aligned_cols=50  Identities=24%  Similarity=0.441  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHHhh
Q 019787           70 EFTDEEDRLICSLFASIGS-RWSIIAAQ----LPGRTDNDIKNYWNTKLKKKLMA  119 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~-kW~~IA~~----lpGRT~~qcknRw~~llkkk~~~  119 (336)
                      +||.|||++|+++|++||. +|..|++.    +++||+.||++||+.+|+.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            7999999999999999996 89999984    68999999999999999876543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-11  Score=91.47  Aligned_cols=48  Identities=17%  Similarity=0.337  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           68 HGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ..+||+|||++|++++.+||.+|..||.+|+|||..||++||..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999887654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=92.17  Aligned_cols=49  Identities=16%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           66 IKHGEFTDEEDRLICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        66 lkkg~WT~EED~~Ll~lv~k~G~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      ....+||+|||++|++++.+||.+|..||..|||||..||++||....+
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            3456899999999999999999999999999999999999999975443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.09  E-value=2.2e-12  Score=94.95  Aligned_cols=45  Identities=16%  Similarity=0.431  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC--CccccccccccccCcccccceecc
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGG--NWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~--nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      .+||+|||++|+++|.+||...  .|..||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999998731  4999999999 9999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3e-10  Score=84.33  Aligned_cols=50  Identities=16%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccc
Q 019787            9 KANVKKGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus         9 kp~lkKg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      +......+||+|||++|+++|.+||.  +|..||..|+ +||..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS--CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC--cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            44556678999999999999999997  8999999998 99999999999764

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.3e-10  Score=82.66  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      ..+||+|||++|.+++.+||.  +|..||..|+ +||+.||+.||.+..+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc--hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            357999999999999999997  8999999999 9999999999988653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=6.1e-09  Score=82.31  Aligned_cols=50  Identities=16%  Similarity=0.278  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC-CCccccccccccccCcccccceecc
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGTG-GNWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~~-~nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      +..+...||.|||+.|+..++++|.. .-|..||++|+ +|++.||+.||..
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~   79 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            45567889999999999999999972 23999999998 9999999999976

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1e-06  Score=63.01  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHHHHHH
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAAQ-LPGRTDNDIKNYWNT  111 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~-lpGRT~~qcknRw~~  111 (336)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4699999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6e-07  Score=65.01  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 019787           69 GEFTDEEDRLICSLFASIG----SRWSIIAAQLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G----~kW~~IA~~lpGRT~~qcknRw~~llk  114 (336)
                      ..||+||+.+|.+++.+|.    .+|.+||..| |||..+|..|++.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            4799999999999999996    3799999999 9999999999976643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=9e-07  Score=64.04  Aligned_cols=45  Identities=24%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCCCccccccccccccCcccccceeccc
Q 019787           15 GPWSPEEDSKLKEYIEKY--GTGGNWIALPQKAGLKRCGKSCRLRWLNY   61 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~ky--G~~~nW~~IA~~l~~gRt~kQCr~RW~n~   61 (336)
                      +.||+||+.+|.+++.+|  |+..+|..||..++  |+..+|..|+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999  55568999999995  9999999998653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=8.9e-05  Score=50.37  Aligned_cols=45  Identities=22%  Similarity=0.446  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHHHHHHHh
Q 019787           69 GEFTDEEDRLICSLFASIGSRWSIIAAQL---PGRTDNDIKNYWNTKL  113 (336)
Q Consensus        69 g~WT~EED~~Ll~lv~k~G~kW~~IA~~l---pGRT~~qcknRw~~ll  113 (336)
                      ..||+||-.-|...|+++|+.|..|-=.+   |||+..++..+|..++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            46999999999999999999999996544   8999999999998763

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=1.9e-05  Score=56.12  Aligned_cols=43  Identities=23%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCccccccccccccCcccccceecc
Q 019787           16 PWSPEEDSKLKEYIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLN   60 (336)
Q Consensus        16 ~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~~gRt~kQCr~RW~n   60 (336)
                      .||+||-+++.+++.+||.  +|..|++.+.++|+..+|...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK--df~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc--cHHHHHHHHcCCCCHHHHHHHHHH
Confidence            6999999999999999997  999999865349999999987754

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.14  E-value=0.00053  Score=49.83  Aligned_cols=46  Identities=11%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCH---HHHHhh--CCCCCHHHHHHHHHHHh
Q 019787           68 HGEFTDEEDRLICSLFASIGSRW---SIIAAQ--LPGRTDNDIKNYWNTKL  113 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~kW---~~IA~~--lpGRT~~qcknRw~~ll  113 (336)
                      +-.||+||.+.+++++..+|..|   ..|...  ++++|..||+.|.+.+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999977   467665  49999999999876553

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00036  Score=49.96  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---------CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 019787           68 HGEFTDEEDRLICSLFASIGS---------RWSIIAA-QLPGRTDNDIKNYWNTKLK  114 (336)
Q Consensus        68 kg~WT~EED~~Ll~lv~k~G~---------kW~~IA~-~lpGRT~~qcknRw~~llk  114 (336)
                      +.+||+|||+.|++.|+++..         =|..+++ .+|.+|-.+.|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999998742         1999996 6799999999999987765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.001  Score=47.48  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-------CCcccccc-ccccccCcccccceeccccC
Q 019787           14 KGPWSPEEDSKLKEYIEKYGTG-------GNWIALPQ-KAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        14 Kg~WT~EEDe~L~~lV~kyG~~-------~nW~~IA~-~l~~gRt~kQCr~RW~n~L~   63 (336)
                      +.+||.|||+.|++.|+++...       .=|..+++ .++ .+|-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4589999999999999998432       14998885 455 7899999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.22  E-value=0.0034  Score=45.39  Aligned_cols=49  Identities=10%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCc--cccccccc-cccCcccccceeccc
Q 019787           12 VKKGPWSPEEDSKLKEYIEKYGTGGNW--IALPQKAG-LKRCGKSCRLRWLNY   61 (336)
Q Consensus        12 lkKg~WT~EEDe~L~~lV~kyG~~~nW--~~IA~~l~-~gRt~kQCr~RW~n~   61 (336)
                      ..+-.||+||.+++.++|+.+|. .+|  ..|.+.|+ +++|..|++-+.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44667999999999999999997 344  46666664 477888887655443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.027  Score=41.17  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC----HHHHHhhCCCCCHHHHHHHHHHHhhh
Q 019787           67 KHGEFTDEEDRLICSLFASIGSR----WSIIAAQLPGRTDNDIKNYWNTKLKK  115 (336)
Q Consensus        67 kkg~WT~EED~~Ll~lv~k~G~k----W~~IA~~lpGRT~~qcknRw~~llkk  115 (336)
                      ..+.|+++|=++|-.++..+..+    |..||..+..||+..|..+|..-++.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34689999999999999998753    99999999999999999888766543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.68  E-value=0.04  Score=40.21  Aligned_cols=53  Identities=19%  Similarity=0.413  Sum_probs=43.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCCccccccccccccCcccccceeccccC
Q 019787           10 ANVKKGPWSPEEDSKLKEYIEKYGT--GGNWIALPQKAGLKRCGKSCRLRWLNYLR   63 (336)
Q Consensus        10 p~lkKg~WT~EEDe~L~~lV~kyG~--~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   63 (336)
                      ....-+.|+++|=++|-.++...-.  .+=|..||..+| .|++..|...|...+.
T Consensus         4 g~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           4 GSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             CCCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CcCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcc
Confidence            3345568999999999999987632  236999999999 9999999999987654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.62  E-value=0.029  Score=37.71  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccccc--cccCcccccceecc
Q 019787           15 GPWSPEEDSKLKEYIEKYGTGGNWIALPQKAG--LKRCGKSCRLRWLN   60 (336)
Q Consensus        15 g~WT~EEDe~L~~lV~kyG~~~nW~~IA~~l~--~gRt~kQCr~RW~n   60 (336)
                      .-||.||-.-|...|+++|.  .|..|--.++  +||++.....+|..
T Consensus         2 knft~eEv~YL~~GVK~~G~--~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcc--hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            46999999999999999998  8999977765  68888777666543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.73  E-value=0.33  Score=33.24  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHH
Q 019787           70 EFTDEEDRLICSLFASIGS-RWSIIAAQLPGRTDNDIKNYWN  110 (336)
Q Consensus        70 ~WT~EED~~Ll~lv~k~G~-kW~~IA~~lpGRT~~qcknRw~  110 (336)
                      .|+.-|=..++.+..+||. +-..||..|.|+|...|+...+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            3999999999999999996 7999999999999999986544

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.66  E-value=0.41  Score=38.41  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-C---HHHHHh------------hCCCCCHHHHHHHHHHHhhhHHh
Q 019787           65 NIKHGEFTDEEDRLICSLFASIGS-R---WSIIAA------------QLPGRTDNDIKNYWNTKLKKKLM  118 (336)
Q Consensus        65 ~lkkg~WT~EED~~Ll~lv~k~G~-k---W~~IA~------------~lpGRT~~qcknRw~~llkkk~~  118 (336)
                      ..++..+|+|||+.|+-++.+||- +   |..|-.            +|..||+..+..|..+|++-..+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            344556999999999999999994 4   988742            23579999999999999876544