Citrus Sinensis ID: 019804

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----

MSACACASVASALATAPSPTNGGFLYRSHPNSKKCIFTFNPFANSSSSSHHHHHHHHHHSPFTLRVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

cccccHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEEEEEEccccccEEEccccEEEEEEcEEEEEcccccEEEEEEEccccccHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccc

ccHHHHHHHHHHHHccccccccccEEccccccccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEcccccccHHHHHHHccccEEEEEEEEEccccEEEEEEEEEEcccccEEEcccEEEEEEEEEEEEEEEccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc

MSACACASVASalatapsptnggflyrshpnskkciftfnpfanssssshhhhhhhhhhspftlrvtndsttstELSIQNQKSeadkivdgmdfgelcnefecissplvESTARQLVRDILELREGNRALGTFAVSvkykdptrsftgrekYKRRLWAttaldnpsvTVQEMVMLSTSVLSIKwtlrgkpksiiANIGGDLIVKVYSKFTLnqisgqvieheelwdlsasspvARAFFWASRRLYATTEAGKDSFDLINNLKSKIsteqenlgiypdpsgdptkvssdsrcfcfcfcltSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

MSACACASVAsalatapsptnGGFLYRSHPNSKKCIFTFNPFANSSSSSHHHHHHHHHHSPFTLRVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELregnralgtfavsvkykdptrsftgrekykrrlwattaldnpsvtVQEMVMLSTSVLSikwtlrgkpksiIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATteagkdsfDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

MsacacasvasalatapsptNGGFLYRSHPNSKKCIFTFNPFANssssshhhhhhhhhhsPFTLRVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRcfcfcfcLTSNVIYIAFASVITLSITHSKHyelllllyeTRLVLS

***********************FLYR*****KKCIFTF************************************************IVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNL****************************RCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLV**

*******************************************************************************************MDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYA**E*************************YPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

**********SALATAPSPTNGGFLYRSHPNSKKCIFTFNPFAN*******************LRVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

*********************GGFLYRSHPNSKKCIFTFNPF*******************FTL******************SEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		335
297735250		346	unnamed protein product [Vitis vinifera]	0.668	0.647	0.804	1e-104
225430926		301	PREDICTED: uncharacterized protein LOC10	0.668	0.744	0.804	1e-104
255547550		312	conserved hypothetical protein [Ricinus	0.752	0.807	0.712	1e-103
147819671		298	hypothetical protein VITISV_020863 [Viti	0.650	0.731	0.812	1e-101
224128790		306	predicted protein [Populus trichocarpa]	0.746	0.816	0.718	1e-100
356568505		307	PREDICTED: uncharacterized protein LOC10	0.779	0.850	0.690	5e-95
255638033		307	unknown [Glycine max]	0.779	0.850	0.686	1e-94
449442645		305	PREDICTED: uncharacterized protein LOC10	0.862	0.947	0.570	4e-94
363807240		307	uncharacterized protein LOC100780920 pre	0.779	0.850	0.677	9e-93
388521943		309	unknown [Lotus japonicus]	0.683	0.741	0.725	4e-92

>gi\|297735250\|emb\|CBI17612.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 204/225 (90%), Gaps = 1/225 (0%)

Query: 61  PFTLRVTNDSTTST-ELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRD 119
           PF L+VTND    T E+SI++++SEADKIVDGMDFGELCNEFECISSPLVESTARQL RD
Sbjct: 89  PFPLKVTNDPNRRTAEVSIESERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD 148

Query: 120 ILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSV 179
           ILELREGNRALGTFAVSVKYKDP RSFTGREKYKRRLW T ALD+PSVTVQEMVMLSTSV
Sbjct: 149 ILELREGNRALGTFAVSVKYKDPVRSFTGREKYKRRLWVTDALDDPSVTVQEMVMLSTSV 208

Query: 180 LSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFW 239
           LSIKWT++GKPKS++A+IGGDLI++V S+FTLNQISGQVIEHEE WDLSASS +A+A+FW
Sbjct: 209 LSIKWTIKGKPKSLLASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSASSAIAQAYFW 268

Query: 240 ASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTK 284
           ASRRL+A TEAGKD  D + N  S++STE+ENL IYPDPSGDPTK
Sbjct: 269 ASRRLFAATEAGKDFADSVKNWGSRLSTEKENLEIYPDPSGDPTK 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225430926\|ref\|XP_002277168.1\| PREDICTED: uncharacterized protein LOC100263239 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255547550\|ref\|XP_002514832.1\| conserved hypothetical protein [Ricinus communis] gi\|223545883\|gb\|EEF47386.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|147819671\|emb\|CAN76393.1\| hypothetical protein VITISV_020863 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128790\|ref\|XP_002328967.1\| predicted protein [Populus trichocarpa] gi\|222839201\|gb\|EEE77552.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356568505\|ref\|XP_003552451.1\| PREDICTED: uncharacterized protein LOC100791782 [Glycine max]	Back alignment and taxonomy information

>gi\|255638033\|gb\|ACU19331.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449442645\|ref\|XP_004139091.1\| PREDICTED: uncharacterized protein LOC101206988 [Cucumis sativus] gi\|449476192\|ref\|XP_004154667.1\| PREDICTED: uncharacterized protein LOC101230689 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|363807240\|ref\|NP_001242357.1\| uncharacterized protein LOC100780920 precursor [Glycine max] gi\|255639967\|gb\|ACU20276.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|388521943\|gb\|AFK49033.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		335
TAIR\|locus:2200410		286	AT1G65230 "AT1G65230" [Arabido	0.644	0.755	0.686	5.5e-77

TAIR\|locus:2200410 AT1G65230 "AT1G65230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 151/220 (68%), Positives = 182/220 (82%)

Query:    65 RVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELR 124
             +V NDST  TE+SI   KSE DK+VD +DFGELCN+FEC SSP VESTARQLVRDILE+R
Sbjct:    38 QVMNDSTR-TEVSID--KSEVDKLVDKIDFGELCNDFECTSSPQVESTARQLVRDILEIR 94

Query:   125 EGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKW 184
             EGNRA   +AVSVKYKDP RSFTGREKYKR +W T+ L+NP+VTVQEMVMLSTSVL IKW
Sbjct:    95 EGNRAFACYAVSVKYKDPVRSFTGREKYKRPMWITSGLENPTVTVQEMVMLSTSVLRIKW 154

Query:   185 TLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRL 244
             T++GKPKSI+A + GDLIVKV S+FTLNQISGQV EHEE WDLS+SSP+A+A+FW SRRL
Sbjct:   155 TVKGKPKSILAAVSGDLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIAQAYFWTSRRL 214

Query:   245 YATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTK 284
             +A +E+ KD  D+  +L + ++T +E+  IY DP+ DP K
Sbjct:   215 FAASESAKDVADVTKDLTANLTTRKEDTDIYRDPT-DPNK 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       284   0.00085  115 3  11 22  0.39    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.73u 0.23s 22.96t   Elapsed:  00:00:01
  Total cpu time:  22.73u 0.23s 22.96t   Elapsed:  00:00:01
  Start:  Fri May 10 08:00:30 2013   End:  Fri May 10 08:00:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00870040	hypothetical protein (306 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		335
pfam10184		113	pfam10184, DUF2358, Uncharacterized conserved prot	8e-05

>gnl\|CDD\|220621 pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358)	Back alignment and domain information

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 137 VKYKDPTRSFTGREKYKRRLWATTALD-----NPSVTVQEMVMLSTSVLSIKWTLRGKPK 191
           V ++DP   F G ++YKR  W    L      +  + + ++       +  +WTL G P+
Sbjct: 28  VYFEDPLNKFRGIDRYKRNFWLIRFLGRLFFADIRLELHDITQTPEDTIKTRWTLSGIPR 87

Query: 192 SIIANIGGDLIVKVYSKFTLNQISGQVIEH 221
                    L     S + LN   G +  H
Sbjct: 88  ---LPWKPRLTFDGTSTYKLNS-DGLIYSH 113

DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		335
PF10184		113	DUF2358: Uncharacterized conserved protein (DUF235	99.93
TIGR02096		129	conserved hypothetical protein, steroid delta-isom	99.24
cd00781		122	ketosteroid_isomerase ketosteroid isomerase: Many	99.11
PF12680		102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	99.02
PF07366		126	SnoaL: SnoaL-like polyketide cyclase; InterPro: IP	98.99
PF07858		125	LEH: Limonene-1,2-epoxide hydrolase catalytic doma	97.48
KOG4457		202	consensus Uncharacterized conserved protein [Funct	97.4
TIGR02960		324	SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa	97.29
PRK08241		339	RNA polymerase factor sigma-70; Validated	97.27
COG4319		137	Ketosteroid isomerase homolog [Function unknown]	95.15
cd00531		124	NTF2_like Nuclear transport factor 2 (NTF2-like) s	94.95
TIGR02246		128	conserved hypothetical protein. This family consis	94.59
PF13474		121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	94.17
PF14534		107	DUF4440: Domain of unknown function (DUF4440); PDB	88.16
COG5485		131	Predicted ester cyclase [General function predicti	86.94
COG3631		133	Ketosteroid isomerase-related protein [General fun	83.64

>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins	Back alignment and domain information

Probab=99.93  E-value=1.5e-25  Score=184.15  Aligned_cols=107  Identities=25%  Similarity=0.446  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHhCCccccccccceEeeCCcccccchHHHHhh----HHHHh-hcCCCeEEEEEEEEecCCEEEEEEE
Q 019804          111 STARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRR----LWATT-ALDNPSVTVQEMVMLSTSVLSIKWT  185 (335)
Q Consensus       111 ~t~rqlarDi~~~rtGnrt~sIYApDV~FKDPFn~FrGrErYkr~----~~M~~-~L~nPrf~V~eI~m~s~dti~irWr  185 (335)
                      ++++.|.+|+...-+|+++++||++||+|+||+++|+|+++|+++    .++.. ++.+|+++|++|.+.++++|++|||
T Consensus         2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~   81 (113)
T PF10184_consen    2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR   81 (113)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence            468899999999889999999999999999999999999999999    35556 6789999999999887779999999


Q ss_pred             EeeecCccccccCCceEEEEEeEEEEeCCCCcEEEE
Q 019804          186 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH  221 (335)
Q Consensus       186 L~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH  221 (335)
                      ++|.+++||   +|++.++|.|+|++|+ +|+|++|
T Consensus        82 ~~g~~~l~w---~p~~~~~G~S~~~ln~-~g~I~~H  113 (113)
T PF10184_consen   82 LRGVPRLPW---RPRISFDGTSTYTLNS-DGLIYRH  113 (113)
T ss_pred             EEEEeCCCc---CCcEEEEEEEEEEECC-CCcEEeC
Confidence            999999999   5689999999999999 9999999

The function is unknown.

>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related	Back alignment and domain information

>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon	Back alignment and domain information

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A	Back alignment and domain information

>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis	Back alignment and domain information

>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism	Back alignment and domain information

>KOG4457 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family	Back alignment and domain information

>PRK08241 RNA polymerase factor sigma-70; Validated	Back alignment and domain information

>COG4319 Ketosteroid isomerase homolog [Function unknown]	Back alignment and domain information

>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily	Back alignment and domain information

>TIGR02246 conserved hypothetical protein	Back alignment and domain information

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B	Back alignment and domain information

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A	Back alignment and domain information

>COG5485 Predicted ester cyclase [General function prediction only]	Back alignment and domain information

>COG3631 Ketosteroid isomerase-related protein [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		335
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3oka_C		26	N-terminal His-affinity TAG; GT-B fold, alpha-mann	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.2 bits (150), Expect = 8e-11
 Identities = 50/336 (14%), Positives = 92/336 (27%), Gaps = 111/336 (33%)

Query: 54  HHHHHHSPFTLRVTNDSTTSTELSIQNQK---SEADKIVDGMDFGE--------LCNEFE 102
           HHHHHH  F            E   Q +       D  VD  D  +        L  E E
Sbjct: 1   HHHHHHMDFET---------GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-E 50

Query: 103 C---ISSPLVESTARQLVRDILELREGNRALGTF--------------AVSVKYKDPTRS 145
               I S    S   +L    L L +    +  F               +  + + P+  
Sbjct: 51  IDHIIMSKDAVSGTLRLF-WTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 146 FTGREKYKRRLWATTALDNP-SVTVQEMVM-LSTSVLSIK---W-TLRGKP---KSIIAN 196
                + + RL+    +    +V+  +  + L  ++L ++      + G     K+    
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--- 165

Query: 197 IGGDLIVKVYSKFTL-NQISGQVIEHEELWDLSASSPVARAFFWASRRLYATTEAGKDSF 255
               + + V   + +  ++  ++                   FW + +   + E      
Sbjct: 166 ----VALDVCLSYKVQCKMDFKI-------------------FWLNLKNCNSPE---TVL 199

Query: 256 DLINNLKSKISTEQENLGIYPDPSGDPTKVSSD-----SRCFC---FCFCL-------TS 300
           +++  L  +I     N     D S +             R      +  CL        +
Sbjct: 200 EMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 301 NVIYIAF------------ASVIT-LSITHSKHYEL 323
                AF              V   LS   + H  L
Sbjct: 257 KAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli} Length = 26	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		335
3dxo_A		121	Uncharacterized snoal-like protein; putative isome	99.44
4h3u_A		158	Hypothetical protein; structural genomics, PSI-bio	99.4
2a15_A		139	Hypothetical protein RV0760C; beta-alpha-barrel, s	99.38
2gey_A		158	ACLR protein; alpha+beta barrel, oxidoreductase; H	99.35
3rga_A		283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	99.34
3rga_A		283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	99.34
2gex_A		152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	99.32
3kkg_A		146	Putative snoal-like polyketide cyclase; structural	99.24
2f99_A		153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	99.24
3f9s_A		146	Putative polyketide cyclase; structural genomics,	99.23
1oh0_A		131	Steroid delta-isomerase; ketosteroid isomerase, KS	99.22
3k0z_A		159	Putative polyketide cyclase; structural genomics,	99.21
1ohp_A		125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	99.2
3fh1_A		129	Uncharacterized NTF2-like protein; structural geno	99.2
3ehc_A		128	Snoal-like polyketide cyclase; structural genomics	99.19
1sjw_A		144	Nogalonic acid methyl ester cyclase; anthracycline	99.18
3ebt_A		132	Uncharacterized NTF2-like protein; structural geno	99.13
3ec9_A		140	Uncharacterized NTF2-like protein; structural geno	99.09
3fgy_A		135	Uncharacterized NTF2-like protein; structural geno	99.09
3i0y_A		140	Putative polyketide cyclase; cystatin-like fold, s	99.07
3mso_A		143	Steroid delta-isomerase; structural genomics, join	99.07
1z1s_A		163	Hypothetical protein PA3332; beta barrel, conserve	99.04
3dm8_A		143	Uncharacterized protein RPA4348; siras, putative i	99.03
3hk4_A		136	MLR7391 protein; NTF2-like protein, structural gen	99.03
3h3h_A		122	Uncharacterized snoal-like protein; structural gen	99.0
1s5a_A		150	Hypothetical protein YESE; structural genomics, PS	99.0
3f7x_A		151	Putative polyketide cyclase; structural genomics,	98.99
3g8z_A		148	Protein of unknown function with cystatin-like FO;	98.98
1nww_A		149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	98.95
3f8h_A		150	Putative polyketide cyclase; structural genomics,	98.89
2k54_A		123	Protein ATU0742; protein of unknown function, stru	98.87
3er7_A		131	Uncharacterized NTF2-like protein; YP_001812677.1,	98.86
3f8x_A		148	Putative delta-5-3-ketosteroid isomerase; structur	98.81
3grd_A		134	Uncharacterized NTF2-superfamily protein; NP_97724	98.79
2bng_A		149	MB2760; epoxide hydrolase, limonene, hydrolase, st	98.77
1tuh_A		156	BAL32A, hypothetical protein EGC068; unknown funct	98.74
3g16_A		156	Uncharacterized protein with cystatin-like fold; Y	98.74
3g0k_A		148	Putative membrane protein; snoal-like polyketide c	98.62
3jum_A		185	Phenazine biosynthesis protein A/B; chirality, dru	98.6
3dmc_A		134	NTF2-like protein; structural genomics, joint cent	98.58
3hx8_A		129	MLR2180 protein, putative ketosteroid isomerase; s	98.42
3en8_A		128	Uncharacterized NTF-2 like protein; YP_553245.1, N	98.39
3ff2_A		117	Uncharacterized cystatin fold protein (YP_497570.	98.35
3ff0_A		163	Phenazine biosynthesis protein PHZB 2; cystatin-li	98.16
3f14_A		112	Uncharacterized NTF2-like protein; YP_680363.1, NT	98.14
3f40_A		114	Uncharacterized NTF2-like protein; YP_677363.1, NT	98.03
3flj_A		155	Uncharacterized protein conserved in bacteria WIT	98.0
3d9r_A		135	Ketosteroid isomerase-like protein; YP_049581.1, s	97.76
3h51_A		156	Putative calcium/calmodulin dependent protein KIN	97.73
3gzb_A		154	Putative snoal-like polyketide cyclase; YP_0011826	97.53
3ke7_A		134	Putative ketosteroid isomerase; structural genomic	97.4
3f7s_A		142	Uncharacterized NTF2-like protein; structural geno	97.35
2gxf_A		142	Hypothetical protein YYBH; alpha-beta protein., st	97.17
3rob_A		139	Uncharacterized conserved protein; structural geno	97.16
3bb9_A		148	Putative orphan protein; structural genomics, join	97.12
2ux0_A		143	Calcium-calmodulin dependent protein kinase (CAM I	96.5
3cu3_A		172	Domain of unknown function with A cystatin-like F;	96.3
1tp6_A		128	Hypothetical protein PA1314; structural genomics,	95.69
3b7c_A		122	Uncharacterized protein; NTF-2 like protein, struc	95.63
3gzr_A		146	Uncharacterized protein with A NTF2-like fold; str	94.99
3gwr_A		144	Putative calcium/calmodulin-dependent protein KIN	94.58
3fsd_A		134	NTF2-like protein of unknown function in nutrient;	93.01
4i4k_A		143	Uncharacterized protein SGCJ; structural genomics,	91.19
2f86_B		143	Hypothetical protein K11E8.1D; UNC-43, oligomeriza	91.14
3b8l_A		163	Uncharacterized protein; putative aromatic ring hy	90.04
2chc_A		170	Protein RV3472; hypothetical protein; 1.69A {Mycob	89.99
2rfr_A		155	Uncharacterized protein; structural genomics, join	89.69
3mg1_A		323	OCP, orange carotenoid protein; carotenoid binding	88.04
2r4i_A		123	Uncharacterized protein; NTF2-like protein, struct	87.2
3cnx_A		170	Uncharacterized protein; putative dehydratase, NTF	86.38
3a76_A		176	Gamma-hexachlorocyclohexane dehydrochlorinase; bar	85.56
3soy_A		145	NTF2-like superfamily protein; structural genomics	84.97
3ecf_A		130	NTF2-like protein; structural genomics, joint cent	83.51

>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19	Back alignment and structure

Probab=99.44  E-value=1.8e-12  Score=103.58  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHH-HhCC------ccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEE-EEEEecCCEEEEE
Q 019804          113 ARQLVRDILEL-REGN------RALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQ-EMVMLSTSVLSIK  183 (335)
Q Consensus       113 ~rqlarDi~~~-rtGn------rt~sIYApDV~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~-eI~m~s~dti~ir  183 (335)
                      .+.+++.+.++ .+++      .+.++|++|+.|.||...++|++.+.+. ..+...+.+.+|+++ .+. ..++.+..+
T Consensus         5 ~~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~   83 (121)
T 3dxo_A            5 HLTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPD-GHGNFTRFS   83 (121)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEE-EETTEEEEE
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCCCcCCHHHHHHHHHHHHHHCCCcEEEEccCcc-eeCCEEEEE
Confidence            34555555555 3444      4899999999999999999999999999 888999999999998 644 558899999


Q ss_pred             EEEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCCC
Q 019804          184 WTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSA  229 (335)
Q Consensus       184 WrL~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~S~  229 (335)
                      |++..  +      +|+..+.|.+.++||+ +|||.++..|||.-+
T Consensus        84 w~~~~--~------~g~~~~~G~d~l~~~~-dGrI~~~~~f~d~~p  120 (121)
T 3dxo_A           84 WRLIS--P------DGDDVAGGTDVVSLNT-EGRIDNVVGFLDGAV  120 (121)
T ss_dssp             EEEEC--T------TSCEEEEEEEEEEECT-TSSEEEEEEEEEC--
T ss_pred             EEEeC--C------CCCceeeEEEEEEECC-CCCEEEEEEecCCCC
Confidence            99971  1      5677899999999998 899999999999765

PyMOL of 3dxo

>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}	Back alignment and structure

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A	Back alignment and structure

>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9	Back alignment and structure

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}	Back alignment and structure

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}	Back alignment and structure

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9	Back alignment and structure

>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}	Back alignment and structure

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*	Back alignment and structure

>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}	Back alignment and structure

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...	Back alignment and structure

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}	Back alignment and structure

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A	Back alignment and structure

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}	Back alignment and structure

>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}	Back alignment and structure

>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9	Back alignment and structure

>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9	Back alignment and structure

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10	Back alignment and structure

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0	Back alignment and structure

>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}	Back alignment and structure

>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}	Back alignment and structure

>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10	Back alignment and structure

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20	Back alignment and structure

>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}	Back alignment and structure

>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}	Back alignment and structure

>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10	Back alignment and structure

>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}	Back alignment and structure

>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}	Back alignment and structure

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*	Back alignment and structure

>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}	Back alignment and structure

>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29	Back alignment and structure

>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24	Back alignment and structure

>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}	Back alignment and structure

>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0	Back alignment and structure

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8	Back alignment and structure

>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11	Back alignment and structure

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}	Back alignment and structure

>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}	Back alignment and structure

>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*	Back alignment and structure

>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10	Back alignment and structure

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}	Back alignment and structure

>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20	Back alignment and structure

>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}	Back alignment and structure

>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}	Back alignment and structure

>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}	Back alignment and structure

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27	Back alignment and structure

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}	Back alignment and structure

>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*	Back alignment and structure

>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}	Back alignment and structure

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22	Back alignment and structure

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}	Back alignment and structure

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16	Back alignment and structure

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*	Back alignment and structure

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28	Back alignment and structure

>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12	Back alignment and structure

>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16	Back alignment and structure

>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}	Back alignment and structure

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}	Back alignment and structure

>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0	Back alignment and structure

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}	Back alignment and structure

>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7	Back alignment and structure

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28	Back alignment and structure

>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25	Back alignment and structure

>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28	Back alignment and structure

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*	Back alignment and structure

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15	Back alignment and structure

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17	Back alignment and structure

>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}	Back alignment and structure

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}	Back alignment and structure

>3ecf_A NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		335
d3dxoa1		117	Uncharacterized protein Atu0744 {Agrobacterium tum	99.56
d2gexa1		138	Nogalamycin biosynthesis protein SnoL {Streptomyce	99.33
d1oh0a_		125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	99.31
d2a15a1		132	Hypothetical protein Rv0760c {Mycobacterium tuberc	99.3
d1ohpa1		125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	99.25
d1nwwa_		145	Limonene-1,2-epoxide hydrolase {Rhodococcus erythr	99.05
d2geya1		144	Putative hydroxylase AclR {Streptomyces galilaeus	99.05
d1z1sa1		129	Uncharacterized protein PA3332 {Pseudomonas aerugi	99.05
d3ebta1		131	Uncharacterized protein BPSS0132 {Burkholderia pse	98.98
d2bnga1		132	Uncharacterized protein Mb2760 {Mycobacterium tube	98.96
d3dm8a1		135	Uncharacterized protein Rpa4348 {Rhodopseudomonas	98.89
d1s5aa_		139	Hypothetical protein YesE {Bacillus subtilis [TaxI	98.88
d2f99a1		140	Aklanonic acid methyl ester cyclase, AknH {Strepto	98.86
d3dmca1		133	Uncharacterized protein Ava2261 {Anabaena variabil	98.73
d1sjwa_		142	Nogalonic acid methyl ester cyclase SnoaL {Strepto	98.71
d3ec9a1		130	Uncharacterized protein BTHI0051 {Burkholderia tha	98.61
d3en8a1		127	Uncharacterized protein BxeB2092 {Burkholderia xen	98.61
d1tuha_		131	Hypothetical protein egc068 from a soil-derived mo	98.35
d2k54a1		123	Uncharacterized protein Atu0742 {Agrobacterium tum	98.04
d1m98a2		142	Orange carotenoid protein, C-terminal domain {Cyan	97.76
d3d9ra1		132	Uncharacterized protein ECA1476 {Pectobacterium at	97.25
d3bb9a1		121	Uncharacterized protein Sfri1973 {Shewanella frigi	96.77
d2gxfa1		128	Hypothetical protein YybH {Bacillus subtilis [TaxI	96.53
d2rcda1		127	Uncharacterized protein ECA3500 {Pectobacterium at	93.78
d3cu3a1		162	Uncharacterized protein NpunR1993 {Nostoc punctifo	92.89
d3cnxa1		153	Uncharacterized protein SAV4671 {Streptomyces aver	92.48
d2rgqa1		133	Uncharacterized protein NpunR3134 {Nostoc punctifo	91.56
d2owpa1		128	Hypothetical protein BxeB1374 {Burkholderia xenovo	90.71
d3er7a1		118	Uncharacterized protein Exig0174 {Exiguobacterium	89.68
d3ef8a1		149	Uncharacterized protein Saro1465 {Novosphingobium	89.67
d2chca1		167	Uncharacterized protein Rv3472 {Mycobacterium tube	89.62
d2r4ia1		122	Uncharacterized protein CHU142 {Cytophaga hutchins	87.81
d3b7ca1		121	Uncharacterized protein SO0125 {Shewanella oneiden	87.68
d3b8la1		144	Uncharacterized protein Saro3538 {Novosphingobium	84.13
d2ux0a1		135	Association domain of calcium/calmodulin-dependent	82.36

>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0744-like
domain: Uncharacterized protein Atu0744
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.56  E-value=2.7e-14  Score=111.13  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHH-hCC------ccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCCEEEEEEE
Q 019804          114 RQLVRDILELR-EGN------RALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWT  185 (335)
Q Consensus       114 rqlarDi~~~r-tGn------rt~sIYApDV~FKDPFn~FrGrErYkr~-~~M~~~L~nPrf~V~eI~m~s~dti~irWr  185 (335)
                      ..+++.++++= +.+      .+.++|++||.|.||++.++|++.++++ ..++..+.++++.++......++.+..+|+
T Consensus         5 ~~~~~~y~~awn~~d~~~~~~~l~~~~a~d~~~~dP~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~w~   84 (117)
T d3dxoa1           5 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHGNFTRFSWR   84 (117)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHccCCEEEECCCCCcccHHHHHHHHHHHHHhCCCcEEEEEEEEecCCCEEEEEEE
Confidence            34566666661 121      2778999999999999999999999999 899999999999988655566899999999


Q ss_pred             EeeecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccC
Q 019804          186 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDL  227 (335)
Q Consensus       186 L~g~~klpwas~gGrl~I~G~Sel~LN~isGrVvsH~DyWD~  227 (335)
                      |.+.        +|.+.+.|++.++||+ +|||.+.++|||.
T Consensus        85 ~~~~--------~~~~~~~G~d~~~~~~-dGkI~~~~~f~D~  117 (117)
T d3dxoa1          85 LISP--------DGDDVAGGTDVVSLNT-EGRIDNVVGFLDG  117 (117)
T ss_dssp             EECT--------TSCEEEEEEEEEEECT-TSSEEEEEEEEEC
T ss_pred             EecC--------CCCeEEEEEEEEEECC-CCCEEEEEEEccC
Confidence            8763        5567899999999998 9999999999994

PyMOL of d3dxoa1

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}	Back information, alignment and structure

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}	Back information, alignment and structure

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}	Back information, alignment and structure

>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}	Back information, alignment and structure

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}	Back information, alignment and structure

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]}	Back information, alignment and structure

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}	Back information, alignment and structure

>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]}	Back information, alignment and structure

>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}	Back information, alignment and structure

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}	Back information, alignment and structure

>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]}	Back information, alignment and structure

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}	Back information, alignment and structure

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}	Back information, alignment and structure

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}	Back information, alignment and structure

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}	Back information, alignment and structure

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}	Back information, alignment and structure

>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]}	Back information, alignment and structure

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}	Back information, alignment and structure

>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}	Back information, alignment and structure

>d3ef8a1 d.17.4.28 (A:1-149) Uncharacterized protein Saro1465 {Novosphingobium aromaticivorans [TaxId: 48935]}	Back information, alignment and structure

>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}	Back information, alignment and structure

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]}	Back information, alignment and structure

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure