Citrus Sinensis ID: 019839

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MDGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENES
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccccccccEEEEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccccccEEEccHHHHHHHHHHHHccccccccccEEEEEcccccHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccHHHHHHcccccEEEEEccccccccHHHHHHHHHHHcccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHEEccccccccccEEEEEEEEcccccccccccEEcccHccccccccEEEcccccEEEccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccEEEEEcccHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccHHHHHHcccccEEEEEEEEEccHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEcHHHHcHcHHHHHHHHHHHHHccccccEEEEcccccccEEccHHcccHHEEEHccccHEEEEEEEcccccc
Coil and Loop (DISEMBL)
mdgedssevmsevhvgcpphssgphisrftislppevepsrynELFEAEAAASVREVLtldddgdlvlprrskqstrcFNVTIQHNItslipsvglQVWKAELVLADFVMHkmctssdfnGIISLELGAGTGLAGILLSRVAWTVFLTDhgnyildncaknvqlnsgvfshqgsvhvrdlnwmnpwppifslgnssasqeryswnSSELKEVQRASVLLAADVIYSDDLTDALFHTLKrlmplgskKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEegehrrferesfpafvgkcidlnefpqyvreydrgndVELWQIKRSENES
Flexible Loop (DISEMBL)
MDGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVrevltldddgdlvlprrskqstrcfNVTIQHNItslipsvglQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKrlmplgskkVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVelwqikrsenes
Low Complexity Region (SEG)
MDGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREvltldddgdlvlPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISlelgagtglagillSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENES
Disordered region (IsUnstruct)
********************************************LFEAEAAASVREVLTLDDDGDLVLPRR*KQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG***************LKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQI*******
Disordered Region (DISOPRED)
*****SS**MSEVHVGCPPHSSGPHISRFTI******************************DDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQ*KRS****
Disordered Region (DISEMBL)
************VHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG**************ELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENES
Disordered Region (DISPRO)
******SEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q9BUU2	404	Methyltransferase-like pr	yes	no	0.647	0.537	0.344	4e-32
Q8R1C6	393	Methyltransferase-like pr	yes	no	0.665	0.567	0.352	5e-32
P40389	303	Rapid response to glucose	yes	no	0.450	0.498	0.307	4e-06
O14118	289	Uncharacterized protein C	no	no	0.435	0.505	0.258	9e-06
Q28IN4	224	Protein-lysine methyltran	no	no	0.355	0.531	0.310	3e-05
Q96AZ1	226	Protein-lysine methyltran	no	no	0.307	0.455	0.350	3e-05
Q3UZW7	335	Protein FAM86A OS=Mus mus	no	no	0.385	0.385	0.294	4e-05
A4FV98	226	Protein-lysine methyltran	no	no	0.328	0.486	0.333	5e-05
Q1JPJ9	340	Protein FAM86A OS=Bos tau	no	no	0.534	0.526	0.266	8e-05
P30643	371	Uncharacterized protein R	yes	no	0.438	0.396	0.271	0.0002

>sp|Q9BUU2|MET22_HUMAN Methyltransferase-like protein 22 OS=Homo sapiens GN=METTL22 PE=2 SV=2

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 143/261 (54%), Gaps = 44/261 (16%)

Query: 81  VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR 140
           + I+H + + +  VG QVW+  L+LAD+++ +      F G  +LELGAGTGLA I+ + 
Sbjct: 169 IRIEHTMATPLEDVGKQVWRGALLLADYILFR---QDLFRGCTALELGAGTGLASIIAAT 225

Query: 141 VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWM------NPWPPIFSLG 193
           +A TV+ TD G  +L  C +N+ LNS + +  G  V V++L+W+      +P  P     
Sbjct: 226 MARTVYCTDVGADLLSMCQRNIALNSHLAATGGGIVRVKELDWLKDDLCTDPKVP----- 280

Query: 194 NSSASQERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNM 252
                   +SW+  E+ ++    ++L AA+V Y DDLTDA+F TL RL    + ++    
Sbjct: 281 --------FSWSQEEISDLYDHTTILFAAEVFYDDDLTDAVFKTLSRL----AHRLKNAC 328

Query: 253 VLYLALEKRYNFSLNDLDVVANGYSHFRSYI-----MEEGEHRRFERESFPAFVGKCIDL 307
              L++EKR NF+L  LDV    Y HFRS +     + +G+ R         FV + ++ 
Sbjct: 329 TAILSVEKRLNFTLRHLDVTCEAYDHFRSCLHALEQLADGKLR---------FVVEPVEA 379

Query: 308 NEFPQYVREYDRGNDVELWQI 328
           + FPQ +  Y+R   +ELW+I
Sbjct: 380 S-FPQLLV-YERLQQLELWKI 398

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8R1C6|MET22_MOUSE Methyltransferase-like protein 22 OS=Mus musculus GN=Mettl22 PE=2 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 32/255 (12%)

Query: 81  VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR 140
           + I+H + + +  VG QVW+  L+LAD+++ +      F G   LELGAGTGLA I+ + 
Sbjct: 158 IKIEHTMATPLEDVGKQVWRGALLLADYILFR---RDLFQGCTVLELGAGTGLASIVAAT 214

Query: 141 VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWMNPWPPIFSLGNSSASQ 199
           +A TV+ TD G  +L  C +NV LNS + +  G  V V++L+W+            +  +
Sbjct: 215 MAHTVYCTDVGTDLLAMCQRNVALNSHLTATGGGVVKVKELDWLKD-------NLCTDPK 267

Query: 200 ERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258
             +SW+  E+ ++    +VLLAA+V Y DDLT+ALF+TL RL+     ++        ++
Sbjct: 268 APFSWSEEEIADLYDHTTVLLAAEVFYDDDLTNALFNTLSRLV----HRLKNACTAIFSV 323

Query: 259 EKRYNFSLNDLDVVANGYSHFRSYI-----MEEGEHRRFERESFPAFVGKCIDLNEFPQY 313
           EKR+NF+L  LDV    Y HFR+ +     + +G   RF  E   A          FPQ 
Sbjct: 324 EKRFNFTLRHLDVTCEAYDHFRASLDSLEKLADG-RLRFMVEPVEA---------SFPQL 373

Query: 314 VREYDRGNDVELWQI 328
           +  Y+R   +ELW+I
Sbjct: 374 LV-YERIRQLELWKI 387

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40389|RRG1_SCHPO Rapid response to glucose protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrg1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 28/179 (15%)

Query: 64  GDLVLPRRSKQSTRCFNVTI-QHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDF-NG 121
           G L  P R ++ +    V++     T    ++G + W +    A  +   +    D  N 
Sbjct: 81  GRLAAPTRKREFSLSNGVSVVLREPTMTYNTLGFKTWGS----APLLSANLPKWEDLSNS 136

Query: 122 IISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVF-SHQGSVHVRD 179
           I +LELGAGTGL GI  + ++ W V  TD  + I++N   NV  NS +   + GSV    
Sbjct: 137 INALELGAGTGLVGISAAIQLGWQVVCTDLPD-IVENMQYNVDYNSELIQQYAGSVSCHV 195

Query: 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---DLTDALFH 235
           L+WMNP               R SW    +K  QR   ++A+D IY     +L  ALF 
Sbjct: 196 LDWMNP----------PDDDNRPSWL---IKPFQR---IIASDCIYETHFGELAIALFR 238

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14118|YEZ3_SCHPO Uncharacterized protein C3A11.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.03 PE=4 SV=3

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 40/186 (21%)

Query: 93  SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGN 152
           + G + W+A + LA+++      S    G+  LELGAGTGL  IL +++   V  TD   
Sbjct: 119 TTGARTWEAGMALAEYIYQHPVQS----GMRVLELGAGTGLVSILCAKMGSIVLATDGDT 174

Query: 153 YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEV 212
            + D   +N +LN+        ++V+ L W    PP FS                     
Sbjct: 175 KVCDGVRENARLNN------CDINVKKLLWGVD-PPEFS--------------------- 206

Query: 213 QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVV 272
               ++ A+DV Y  DL   L  TL +++ +        ++L  +L ++  F  N L ++
Sbjct: 207 ---DIVFASDVTYDCDLR-CLATTLTQIITINPN---CKIILSASLRRQETF-FNFLKLI 258

Query: 273 ANGYSH 278
            N Y+ 
Sbjct: 259 QNLYAR 264

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 62/148 (41%), Gaps = 29/148 (19%)

Query: 93  SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGN 152
            V   VW A L L  +   +     DF G   +ELGAGTG+ GIL+S +   V LTD   
Sbjct: 52  GVAAPVWDAALFLCGYFEEQKL---DFKGKKVIELGAGTGIVGILVSLLGGHVTLTDL-P 107

Query: 153 YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEV 212
           + L    KNV  N              ++  NP P + +L          SW   + K  
Sbjct: 108 HALSQIQKNVSAN--------------VSSNNP-PQVCAL----------SWGLDQEKFP 142

Query: 213 QRASVLLAADVIYSDDLTDALFHTLKRL 240
           Q    +L AD++Y  D    L  TL+ L
Sbjct: 143 QDYDFVLGADIVYLHDTYPLLIQTLQYL 170

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 72  SKQSTRCFN---VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELG 128
           S++S  CF    +TI  N  S +  V  +VW A L L ++   +   + DF G   +ELG
Sbjct: 28  SEKSQFCFCGHVLTITQNFGSRL-GVAARVWDAALSLCNYFESQ---NVDFRGKKVIELG 83

Query: 129 AGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182
           AGTG+ GIL +     V +TD     L+    NVQ N       G   VR L+W
Sbjct: 84  AGTGIVGILAALQGGDVTITDL-PLALEQIQGNVQAN---VPAGGQAQVRALSW 133

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3UZW7|FA86A_MOUSE Protein FAM86A OS=Mus musculus GN=Fam86a PE=2 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 24/153 (15%)

Query: 93  SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDH 150
           + GL  W A L LA++ +      + F     LELG+G GL G+ + +         +D 
Sbjct: 133 TTGLVTWDAALYLAEWAIEN---PAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDC 189

Query: 151 GNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWN---SS 207
              +L+    NV LN   FS            + P  PI   G+S  +  +  W+   +S
Sbjct: 190 HAQVLEQLRGNVLLNG--FS------------LEPHTPI-DAGSSKVTVAQLDWDEVTAS 234

Query: 208 ELKEVQRASVLLAADVIYSDDLTDALFHTLKRL 240
           +L   Q A V++AADV+Y  ++T +L   LK L
Sbjct: 235 QLSAFQ-ADVVIAADVLYCWEMTLSLVRVLKML 266

Mus musculus (taxid: 10090)

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 19/129 (14%)

Query: 65  DLVLPRR--------SKQSTRCFN---VTIQHNITSLIPSVGLQVWKAELVLADFVMHKM 113
           D V PR         S++S  CF    + I  N  S +  V  +VW A L L ++   + 
Sbjct: 13  DSVFPREVGLFADCYSEKSRFCFCGHVLNITENFGSRL-GVAARVWDAALSLCNYFESQ- 70

Query: 114 CTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG 173
             + DF G   +ELGAGTG+ GIL +     V +TD    +L+    NVQ N       G
Sbjct: 71  --NVDFRGKKVIELGAGTGIVGILAALQGGDVTITDL-PLVLEQIQGNVQAN---VPPGG 124

Query: 174 SVHVRDLNW 182
              VR L+W
Sbjct: 125 RAQVRALSW 133

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q1JPJ9|FA86A_BOVIN Protein FAM86A OS=Bos taurus GN=FAM86A PE=2 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 27/206 (13%)

Query: 43  NELFEAEAAASVREVLTLDDDG----DLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQV 98
           +EL++A A     EVLT +D        +LP      T C +  I  + T+     GL  
Sbjct: 90  DELYQALA-----EVLTAEDPTHCHRSYLLPS-GDSVTLCESTAIVSHGTT-----GLVT 138

Query: 99  WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILD 156
           W A L LA++ +      + F   + LELG+G GL G+ + +         +D  +++L+
Sbjct: 139 WNAALYLAEWAVEN---PAVFAHRMVLELGSGAGLTGLAICKTCRPRAYIFSDCHSHVLE 195

Query: 157 NCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQ--R 214
               NV LN   FS + S+   D    +P P          +  R  W++    ++   +
Sbjct: 196 QLRGNVLLNG--FSLEPSI---DTWAQHPGPHTPEAERPWVTVARLDWDTVTAPQLAAFQ 250

Query: 215 ASVLLAADVIYSDDLTDALFHTLKRL 240
             V+LAADV+Y  +   +L   L++L
Sbjct: 251 PDVVLAADVLYCPETVLSLVGVLRKL 276

Bos taurus (taxid: 9913)

>sp|P30643|YNE4_CAEEL Uncharacterized protein R08D7.4 OS=Caenorhabditis elegans GN=R08D7.4 PE=2 SV=3

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 48/195 (24%)

Query: 56  EVLTLDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCT 115
           E + L D GD VL + S+   +             + + GL VW+A   LA+        
Sbjct: 137 ERVYLTDGGDKVLAKFSEAVNQLS-----------MGTTGLSVWQASCDLANLFR---LI 182

Query: 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLN--------S 166
            S++N I  LELG+G G++GI ++++    V LTD+ + +L+   +N+  N        S
Sbjct: 183 PSEYNRI--LELGSGCGVSGIAIAKMNDCCVTLTDYDDNVLNLLEENIAKNDLKSDTEDS 240

Query: 167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS 226
              ++Q +  VR LNW +                   ++ SE KE     +++AADV+Y 
Sbjct: 241 SANNNQAT--VRSLNWCD-------------------FDFSEWKE--PTDLIIAADVVYD 277

Query: 227 DDLTDALFHTLKRLM 241
             L  +L + L  L+
Sbjct: 278 TALLASLCNVLNLLL 292

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
224059058	339	predicted protein [Populus trichocarpa]	0.934	0.923	0.643	1e-114
297743282	339	unnamed protein product [Vitis vinifera]	0.943	0.932	0.629	1e-113
255550040	344	conserved hypothetical protein [Ricinus	0.943	0.918	0.646	1e-110
359482604	315	PREDICTED: methyltransferase-like protei	0.901	0.958	0.633	1e-109
357454975	347	hypothetical protein MTR_2g102040 [Medic	0.955	0.922	0.586	1e-104
240254407	312	Putative methyltransferase family protei	0.895	0.961	0.521	5e-89
413943582	358	hypothetical protein ZEAMMB73_544621 [Ze	0.973	0.910	0.478	1e-83
413943583	359	hypothetical protein ZEAMMB73_544621 [Ze	0.973	0.908	0.476	2e-83
222635952	528	hypothetical protein OsJ_22104 [Oryza sa	0.955	0.606	0.501	8e-82
115469120	352	Os06g0639300 [Oryza sativa Japonica Grou	0.955	0.909	0.501	9e-82

>gi|224059058|ref|XP_002299696.1| predicted protein [Populus trichocarpa] gi|222846954|gb|EEE84501.1| predicted protein [Populus trichocarpa]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 254/323 (78%), Gaps = 10/323 (3%)

Query: 9   VMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLVL 68
           VMSEVH+GCPP SSGPHIS FTIS+PP V+  R+N LF+ E    + +++ +D+DGDL+L
Sbjct: 10  VMSEVHLGCPPGSSGPHISHFTISIPPGVDCGRFNNLFKDEQVP-MHQMVCVDEDGDLIL 68

Query: 69  PRRSKQ---STRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISL 125
            RR       TR F+VTIQHNITS I +VGLQVWKAEL+L+DFV+HKM TSSDF+ I+SL
Sbjct: 69  TRRHAHHYLPTRSFSVTIQHNITSSISNVGLQVWKAELLLSDFVLHKMLTSSDFDEIVSL 128

Query: 126 ELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185
           ELGAGTGL G+LL+ VA TVFLTD G+ ILDNCA NV LNS V ++QGS+HVR+L+WM  
Sbjct: 129 ELGAGTGLVGMLLAHVAKTVFLTDRGDEILDNCASNVDLNSEVLNYQGSIHVRELDWMGS 188

Query: 186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245
           WPP  S GNS+   + YSW SS ++E +RA++L+AADVIYSDDLTDALF  L++LM L  
Sbjct: 189 WPPSTSSGNSTC-HKSYSWTSSNVEEAERAALLVAADVIYSDDLTDALFCVLEKLMSLSP 247

Query: 246 KKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCI 305
           KK     VLYLALEKRYNFSL+DLDVVANGYSHFRSY+  + ++   +  S P FVGKC+
Sbjct: 248 KK-----VLYLALEKRYNFSLDDLDVVANGYSHFRSYLRGQEDYDNLKHGSSPCFVGKCL 302

Query: 306 DLNEFPQYVREYDRGNDVELWQI 328
           DL+  PQYVREY+RGNDVELWQI
Sbjct: 303 DLSLIPQYVREYERGNDVELWQI 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743282|emb|CBI36149.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/329 (62%), Positives = 254/329 (77%), Gaps = 13/329 (3%)

Query: 2   DGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPE-VEPSRYNELFEAEAAASVREVLTL 60
           D E+  +VMSEVH+GCPP  SGPHIS+FTISLPP+  E  R  E      A S ++ + L
Sbjct: 12  DLEEHEQVMSEVHLGCPPGLSGPHISKFTISLPPQGAESIRQGE------AVSTQQNIEL 65

Query: 61  DDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFN 120
           D+DGDLV+ RR++QS R   + IQHNITS IP+VGLQVW+AEL+L+DFV+HK+ TSS+F 
Sbjct: 66  DEDGDLVVKRRNRQSNRSCCLIIQHNITSSIPNVGLQVWRAELILSDFVLHKIHTSSEFE 125

Query: 121 GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180
           GI+SLELGAGTG+ GI+L+ VA  VF+TDHG+ ILDNCA NV LNS +F+HQ SV+VR L
Sbjct: 126 GIVSLELGAGTGMVGIILACVAKRVFITDHGDEILDNCANNVHLNSEMFNHQASVYVRGL 185

Query: 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL 240
           NW N WPP      SS +Q+R+SW +SE++EVQ AS+LLAADVIYSDDLTDA F+TL+RL
Sbjct: 186 NWKNSWPPTMD-SESSETQKRFSWTASEVEEVQGASLLLAADVIYSDDLTDAFFNTLERL 244

Query: 241 MPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAF 300
           M  GS+K     VLYLALEKRYNFSL+DLDVVANGY  F+SY+ +  E    E E  P F
Sbjct: 245 MSQGSEK-----VLYLALEKRYNFSLDDLDVVANGYLRFQSYLRDAEECESLEHEPLPRF 299

Query: 301 VGKCIDLNEFPQYVREYDRGNDVELWQIK 329
           VGK IDL + PQYVREY+RGND+E+WQIK
Sbjct: 300 VGKPIDLTQIPQYVREYNRGNDIEIWQIK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550040|ref|XP_002516071.1| conserved hypothetical protein [Ricinus communis] gi|223544976|gb|EEF46491.1| conserved hypothetical protein [Ricinus communis]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/325 (64%), Positives = 249/325 (76%), Gaps = 9/325 (2%)

Query: 8   EVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLDDDGDLV 67
           +VMSE+H+GCPP+SSGPH S FTIS+PP+V+  R  + F+ E   +  ++L +D+DGDLV
Sbjct: 13  QVMSEIHLGCPPNSSGPHTSNFTISIPPDVDHGRCKDFFKDEEVTTRDQMLCVDEDGDLV 72

Query: 68  LPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLEL 127
           L RRSK  TR F+VTIQHNITS IPSVGLQVWKAELVL+DFV+HKM TSS+F+GI  LEL
Sbjct: 73  LTRRSKSPTRSFSVTIQHNITSSIPSVGLQVWKAELVLSDFVLHKMFTSSEFDGISLLEL 132

Query: 128 GAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWP 187
           GAGTGL G+LL+ VA  VFLTD G+ IL+NCA+NVQLNS V + + ++HVR+L+WMN WP
Sbjct: 133 GAGTGLVGMLLAHVAKVVFLTDRGDEILENCARNVQLNSEVLNCRSAIHVRELDWMNSWP 192

Query: 188 PIFSLGNSSASQ---ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244
           PI   GN +       RYSW  +E++E Q  S+LLAADVIYSDDLTDALF  L  LMPLG
Sbjct: 193 PIEHCGNLAGPMSVISRYSWIPAEIEEAQGVSLLLAADVIYSDDLTDALFSILGTLMPLG 252

Query: 245 SKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKC 304
           S+K     VLYLALEKRYNFSL+DLDVVANGY HF SY+ EE         S P FVGK 
Sbjct: 253 SEK-----VLYLALEKRYNFSLDDLDVVANGYKHFLSYLKEEEYEELEYGSS-PCFVGKR 306

Query: 305 IDLNEFPQYVREYDRGNDVELWQIK 329
           IDL+  PQYVR YDRGNDVELWQIK
Sbjct: 307 IDLSLIPQYVRGYDRGNDVELWQIK 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482604|ref|XP_002279614.2| PREDICTED: methyltransferase-like protein 22-like [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 251/322 (77%), Gaps = 20/322 (6%)

Query: 10  MSEVHVGCPPHSSGPHISRFTISLPPE-VEPSRYNELFEAEAAASVREVLTLDDDGDLVL 68
           MSEVH+GCPP  SGPHIS+FTISLPP+  E  R  E      A S ++ + LD+DGDLV+
Sbjct: 1   MSEVHLGCPPGLSGPHISKFTISLPPQGAESIRQGE------AVSTQQNIELDEDGDLVV 54

Query: 69  PRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELG 128
            RR++QS R   + IQHNITS IP+VGLQVW+AEL+L+DFV+HK+ TSS+F GI+SLELG
Sbjct: 55  KRRNRQSNRSCCLIIQHNITSSIPNVGLQVWRAELILSDFVLHKIHTSSEFEGIVSLELG 114

Query: 129 AGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPP 188
           AGTG+ GI+L+ VA  VF+TDHG+ ILDNCA NV LNS +F+HQ SV+VR LNW N WPP
Sbjct: 115 AGTGMVGIILACVAKRVFITDHGDEILDNCANNVHLNSEMFNHQASVYVRGLNWKNSWPP 174

Query: 189 IFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248
                 SS +Q+R+SW +SE++EVQ AS+LLAADVIYSDDLTDA F+TL+RLM  GS+K 
Sbjct: 175 TMD-SESSETQKRFSWTASEVEEVQGASLLLAADVIYSDDLTDAFFNTLERLMSQGSEK- 232

Query: 249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIME-EGEHRRFERESFPAFVGKCIDL 307
               VLYLALEKRYNFSL+DLDVVANGY  F+SY+ + EG+H      S  +FVGK IDL
Sbjct: 233 ----VLYLALEKRYNFSLDDLDVVANGYLRFQSYLRDAEGKH------SSASFVGKPIDL 282

Query: 308 NEFPQYVREYDRGNDVELWQIK 329
            + PQYVREY+RGND+E+WQIK
Sbjct: 283 TQIPQYVREYNRGNDIEIWQIK 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454975|ref|XP_003597768.1| hypothetical protein MTR_2g102040 [Medicago truncatula] gi|355486816|gb|AES68019.1| hypothetical protein MTR_2g102040 [Medicago truncatula]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/331 (58%), Positives = 243/331 (73%), Gaps = 11/331 (3%)

Query: 2   DGEDSSEVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEAEAAASVREVLTLD 61
           DG D  EVMSEVH+GCPP  SGPHISRFTISLP   +      +  +E  +   ++L  D
Sbjct: 12  DGGDE-EVMSEVHLGCPPRFSGPHISRFTISLPLLHDVDHIKHILSSENESLETQILEFD 70

Query: 62  DDGDLVLPRRSKQSTRCFN---VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSD 118
            DGDL+LPRR+  S+ C N   V IQHNITS IP+VGLQVW+AELVL DF++HK   SS+
Sbjct: 71  QDGDLLLPRRTSISS-CKNSYCVRIQHNITSSIPNVGLQVWRAELVLTDFILHKALCSSE 129

Query: 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178
           F+G+I+LELGAGTGL G+LL+R A +VF+TD GN ILDNC KNVQLN G+ ++  ++ VR
Sbjct: 130 FHGVIALELGAGTGLVGLLLARTANSVFVTDRGNQILDNCVKNVQLNRGLLNNPATIFVR 189

Query: 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK 238
           DL+W + WPP   +  +S +Q RYSW S E+++ + AS+LLAADVIYSDDLTDA F TL+
Sbjct: 190 DLDWFDSWPPKARVEEASHTQ-RYSWTSREIEDAENASLLLAADVIYSDDLTDAFFSTLE 248

Query: 239 RLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFP 298
           RLM  GS K     VLY+ALEKRYNFS +DLDVVANGYSHFRSY+ +      FE    P
Sbjct: 249 RLMSRGSAK-----VLYMALEKRYNFSFSDLDVVANGYSHFRSYLRDVDAVESFESACIP 303

Query: 299 AFVGKCIDLNEFPQYVREYDRGNDVELWQIK 329
            FVGK  D+++ PQYV+EY+R +DVE+WQIK
Sbjct: 304 NFVGKQTDISQIPQYVKEYERTHDVEIWQIK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254407|ref|NP_683510.4| Putative methyltransferase family protein [Arabidopsis thaliana] gi|332198203|gb|AEE36324.1| Putative methyltransferase family protein [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 172/330 (52%), Positives = 226/330 (68%), Gaps = 30/330 (9%)

Query: 1   MDGEDSSEVMSEVHVGCPPHSSG-PHISRFTISLPPEVEPSRYNELFEAEAAASVREVLT 59
           M+ +   EVMSE+H+GCPP ++  P +SRFT S P                       ++
Sbjct: 1   MEEDSEIEVMSEIHLGCPPAATDDPFLSRFTFSFPSNT--------------------VS 40

Query: 60  LDDDGDLVLPRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDF 119
           +D DGDL+LPRR+  +   F VTIQH+ITS +  VGLQVWKA+LVL++FV+HK+CTSSDF
Sbjct: 41  VDKDGDLLLPRRNYPTGPSFTVTIQHSITSNLRHVGLQVWKAQLVLSEFVLHKICTSSDF 100

Query: 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179
           +GI+ LELGAGTGL GILL+RVA  +FLTDHG+ IL NC KN++LNS +F     V+VR+
Sbjct: 101 HGIVCLELGAGTGLLGILLARVAKAIFLTDHGDEILGNCGKNLELNSSLFHPHTVVNVRE 160

Query: 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR 239
           LNWM+ WP   +   S      Y WN  + + V+ +S + AADVIYSDDLT ALF  L+R
Sbjct: 161 LNWMSDWPIQDTHALSPLFMSSYCWNKQDFELVKCSSFIFAADVIYSDDLTIALFSMLRR 220

Query: 240 LMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPA 299
           +M  G  K     VLYL LEKRYNFSL+DL+VVANGY+ FRSY+ E+G  ++ +R    +
Sbjct: 221 VMSFGCDK-----VLYLGLEKRYNFSLDDLNVVANGYTCFRSYVKEDGIGKQEKR----S 271

Query: 300 FVGKCIDLNEFPQYVREYDRGNDVELWQIK 329
           FVGK ID+ + P Y+++YDRG DVELW+IK
Sbjct: 272 FVGKRIDVTQIPHYLKDYDRGEDVELWEIK 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413943582|gb|AFW76231.1| hypothetical protein ZEAMMB73_544621 [Zea mays]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/345 (47%), Positives = 227/345 (65%), Gaps = 19/345 (5%)

Query: 3   GEDSSEVMSEVHVGCPPHSSGPHISRFTISLPP--------EVEPSRYNELFEAEAAAS- 53
           G +  +VMSEVH+GCPPH SG  +S F+ S  P               +EL  A + +  
Sbjct: 7   GAEDEQVMSEVHLGCPPHFSGLLVSHFSFSSRPLGPYGHKGGGGGGGGSELVAATSGSGD 66

Query: 54  VREVLTLDDDGDLVLPRRSKQSTRCFN---VTIQHNITSLIPSVGLQVWKAELVLADFVM 110
             + + +D+DGDLVL RR +      +    TIQH +TS + SVGLQVWKA L+L+DF++
Sbjct: 67  SPDAVAVDEDGDLVLDRRRRNKYARGDRHLFTIQHGVTSSLKSVGLQVWKAALLLSDFIL 126

Query: 111 HKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFS 170
           H+  +S +F+G+ ++E+GAGTGL G+ L+RVA  +F+TD G  ILDNC  N+ +NSG+  
Sbjct: 127 HESFSSPNFDGVTAIEIGAGTGLVGLALARVARRIFVTDRGTDILDNCLANLHINSGMLR 186

Query: 171 -HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL 229
             +  V VR+L+W   WPP     + S    RY W++SE++E ++A+VL AADVIYSDDL
Sbjct: 187 FDEAKVCVRELDWKMAWPPPVGTYDPS-DPSRYLWSASEVEEAEKATVLFAADVIYSDDL 245

Query: 230 TDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEH 289
           T+  F+T+K+LM +G+KK     VLYLALEKRYNFS+++LDVVANGY+HFRS+   + EH
Sbjct: 246 TNLFFNTVKKLMSVGAKK-----VLYLALEKRYNFSVDELDVVANGYTHFRSFFTAQDEH 300

Query: 290 RRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENE 334
                 S P FVGK ID  E PQY+REY+RG D+E+W I  S  E
Sbjct: 301 GDPSNRSGPGFVGKQIDPAEIPQYIREYERGKDLEMWMIMYSPEE 345

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413943583|gb|AFW76232.1| hypothetical protein ZEAMMB73_544621 [Zea mays]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/346 (47%), Positives = 227/346 (65%), Gaps = 20/346 (5%)

Query: 3   GEDSSEVMSEVHVGCPPHSSGPHISRFTISLPP--------EVEPSRYNELFEAEAAAS- 53
           G +  +VMSEVH+GCPPH SG  +S F+ S  P               +EL  A + +  
Sbjct: 7   GAEDEQVMSEVHLGCPPHFSGLLVSHFSFSSRPLGPYGHKGGGGGGGGSELVAATSGSGG 66

Query: 54  -VREVLTLDDDGDLVLPRRSKQSTRCFN---VTIQHNITSLIPSVGLQVWKAELVLADFV 109
              + + +D+DGDLVL RR +      +    TIQH +TS + SVGLQVWKA L+L+DF+
Sbjct: 67  DSPDAVAVDEDGDLVLDRRRRNKYARGDRHLFTIQHGVTSSLKSVGLQVWKAALLLSDFI 126

Query: 110 MHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF 169
           +H+  +S +F+G+ ++E+GAGTGL G+ L+RVA  +F+TD G  ILDNC  N+ +NSG+ 
Sbjct: 127 LHESFSSPNFDGVTAIEIGAGTGLVGLALARVARRIFVTDRGTDILDNCLANLHINSGML 186

Query: 170 S-HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD 228
              +  V VR+L+W   WPP     + S    RY W++SE++E ++A+VL AADVIYSDD
Sbjct: 187 RFDEAKVCVRELDWKMAWPPPVGTYDPS-DPSRYLWSASEVEEAEKATVLFAADVIYSDD 245

Query: 229 LTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGE 288
           LT+  F+T+K+LM +G+KK     VLYLALEKRYNFS+++LDVVANGY+HFRS+   + E
Sbjct: 246 LTNLFFNTVKKLMSVGAKK-----VLYLALEKRYNFSVDELDVVANGYTHFRSFFTAQDE 300

Query: 289 HRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSENE 334
           H      S P FVGK ID  E PQY+REY+RG D+E+W I  S  E
Sbjct: 301 HGDPSNRSGPGFVGKQIDPAEIPQYIREYERGKDLEMWMIMYSPEE 346

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635952|gb|EEE66084.1| hypothetical protein OsJ_22104 [Oryza sativa Japonica Group]

 Score =  310 bits (793), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 170/339 (50%), Positives = 227/339 (66%), Gaps = 19/339 (5%)

Query: 8   EVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEA-----EAAASVR-----EV 57
           +VMSEVH+GCPP  SG ++SRF+ S  P + PS  ++  E      + AAS       + 
Sbjct: 194 QVMSEVHLGCPPRFSGLYVSRFSFSSRP-LGPSAGSDGGECSGVREQVAASSSSCGSPDA 252

Query: 58  LTLDDDGDLVLPRRSKQSTRCFNV-TIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTS 116
           +T+D+DGDLVL RR +   R  +V T+QH ITS + SVGLQVWKA L+L DFV+HK  TS
Sbjct: 253 VTVDEDGDLVLDRRRRNRGRSDHVLTVQHGITSSLRSVGLQVWKAALLLTDFVLHKSFTS 312

Query: 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSV 175
           S+FNG+ ++E+GAGTGL G+ L+RVA  +F+TD G+ ILDNC  NVQLNS +    +   
Sbjct: 313 SEFNGVTAIEIGAGTGLVGLALARVAKKIFITDRGSDILDNCLANVQLNSSMLKFDEAKA 372

Query: 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH 235
            VR+L+W   WPP     +SS    +Y W +SE++  ++A+ L AADVIYSDDLTD  F 
Sbjct: 373 CVRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFAADVIYSDDLTDLFFS 432

Query: 236 TLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERE 295
             K+LM  G++K     VLYL LEKRYNFS+++LDVVANGY HFRS+   + E    +  
Sbjct: 433 IAKKLMSHGAEK-----VLYLTLEKRYNFSMDELDVVANGYKHFRSFFTVQDESGALDDN 487

Query: 296 SF-PAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSEN 333
           S  P FVG+ +DL E PQY+REYDRG D+E+W+I  + N
Sbjct: 488 SCRPDFVGEQMDLAEVPQYIREYDRGKDLEMWKIMYNPN 526

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115469120|ref|NP_001058159.1| Os06g0639300 [Oryza sativa Japonica Group] gi|51535589|dbj|BAD37533.1| unknown protein [Oryza sativa Japonica Group] gi|51536354|dbj|BAD37485.1| unknown protein [Oryza sativa Japonica Group] gi|113596199|dbj|BAF20073.1| Os06g0639300 [Oryza sativa Japonica Group] gi|215766079|dbj|BAG98307.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  310 bits (793), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 170/339 (50%), Positives = 227/339 (66%), Gaps = 19/339 (5%)

Query: 8   EVMSEVHVGCPPHSSGPHISRFTISLPPEVEPSRYNELFEA-----EAAASVR-----EV 57
           +VMSEVH+GCPP  SG ++SRF+ S  P + PS  ++  E      + AAS       + 
Sbjct: 18  QVMSEVHLGCPPRFSGLYVSRFSFSSRP-LGPSAGSDGGECSGVREQVAASSSSCGSPDA 76

Query: 58  LTLDDDGDLVLPRRSKQSTRCFNV-TIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTS 116
           +T+D+DGDLVL RR +   R  +V T+QH ITS + SVGLQVWKA L+L DFV+HK  TS
Sbjct: 77  VTVDEDGDLVLDRRRRNRGRSDHVLTVQHGITSSLRSVGLQVWKAALLLTDFVLHKSFTS 136

Query: 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSV 175
           S+FNG+ ++E+GAGTGL G+ L+RVA  +F+TD G+ ILDNC  NVQLNS +    +   
Sbjct: 137 SEFNGVTAIEIGAGTGLVGLALARVAKKIFITDRGSDILDNCLANVQLNSSMLKFDEAKA 196

Query: 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH 235
            VR+L+W   WPP     +SS    +Y W +SE++  ++A+ L AADVIYSDDLTD  F 
Sbjct: 197 CVRELDWKMSWPPPVFKCDSSDPSSKYLWYTSEIEAAEKATTLFAADVIYSDDLTDLFFS 256

Query: 236 TLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERE 295
             K+LM  G++K     VLYL LEKRYNFS+++LDVVANGY HFRS+   + E    +  
Sbjct: 257 IAKKLMSHGAEK-----VLYLTLEKRYNFSMDELDVVANGYKHFRSFFTVQDESGALDDN 311

Query: 296 SF-PAFVGKCIDLNEFPQYVREYDRGNDVELWQIKRSEN 333
           S  P FVG+ +DL E PQY+REYDRG D+E+W+I  + N
Sbjct: 312 SCRPDFVGEQMDLAEVPQYIREYDRGKDLEMWKIMYNPN 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:504956295	312	AT1G79915 "AT1G79915" [Arabido	0.752	0.807	0.517	9.7e-74
UNIPROTKB|Q9BUU2	404	METTL22 "Methyltransferase-lik	0.674	0.559	0.305	1.7e-27
ZFIN|ZDB-GENE-081022-70	403	zgc:194177 "zgc:194177" [Danio	0.680	0.565	0.32	2.8e-27
MGI|MGI:2384301	393	Mettl22 "methyltransferase lik	0.674	0.575	0.309	5.9e-25
FB|FBgn0037045	274	CG10584 [Drosophila melanogast	0.343	0.419	0.356	1.2e-12

TAIR|locus:504956295 AT1G79915 "AT1G79915" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 135/261 (51%), Positives = 178/261 (68%)

Query:    69 PRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXX 128
             PRR+  +   F VTIQH+ITS +  VGLQVWKA+LVL++FV+HK+CTSSDF+GI+     
Sbjct:    50 PRRNYPTGPSFTVTIQHSITSNLRHVGLQVWKAQLVLSEFVLHKICTSSDFHGIVCLELG 109

Query:   129 XXXXXXXXXXSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPP 188
                       +RVA  +FLTDHG+ IL NC KN++LNS +F     V+VR+LNWM+ WP 
Sbjct:   110 AGTGLLGILLARVAKAIFLTDHGDEILGNCGKNLELNSSLFHPHTVVNVRELNWMSDWPI 169

Query:   189 IFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248
               +   S      Y WN  + + V+ +S + AADVIYSDDLT ALF  L+R+M  G  KV
Sbjct:   170 QDTHALSPLFMSSYCWNKQDFELVKCSSFIFAADVIYSDDLTIALFSMLRRVMSFGCDKV 229

Query:   249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLN 308
             L     YL LEKRYNFSL+DL+VVANGY+ FRSY+ E+G  ++ +R    +FVGK ID+ 
Sbjct:   230 L-----YLGLEKRYNFSLDDLNVVANGYTCFRSYVKEDGIGKQEKR----SFVGKRIDVT 280

Query:   309 EFPQYVREYDRGNDVELWQIK 329
             + P Y+++YDRG DVELW+IK
Sbjct:   281 QIPHYLKDYDRGEDVELWEIK 301

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BUU2 METTL22 "Methyltransferase-like protein 22" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 77/252 (30%), Positives = 130/252 (51%)

Query:    81 VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXXXXXXXXXXXXSR 140
             + I+H + + +  VG QVW+  L+LAD+++ +      F G  +              + 
Sbjct:   169 IRIEHTMATPLEDVGKQVWRGALLLADYILFRQDL---FRGCTALELGAGTGLASIIAAT 225

Query:   141 VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWMNPWPPIFSLGNSSASQ 199
             +A TV+ TD G  +L  C +N+ LNS + +  G  V V++L+W+        L   +  +
Sbjct:   226 MARTVYCTDVGADLLSMCQRNIALNSHLAATGGGIVRVKELDWLKD-----DL--CTDPK 278

Query:   200 ERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258
               +SW+  E+ ++    ++L AA+V Y DDLTDA+F TL RL    + ++       L++
Sbjct:   279 VPFSWSQEEISDLYDHTTILFAAEVFYDDDLTDAVFKTLSRL----AHRLKNACTAILSV 334

Query:   259 EKRYNFSLNDLDVVANGYSHFRS--YIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVRE 316
             EKR NF+L  LDV    Y HFRS  + +E+    +        FV + ++ + FPQ +  
Sbjct:   335 EKRLNFTLRHLDVTCEAYDHFRSCLHALEQLADGKLR------FVVEPVEAS-FPQLL-V 386

Query:   317 YDRGNDVELWQI 328
             Y+R   +ELW+I
Sbjct:   387 YERLQQLELWKI 398

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-081022-70 zgc:194177 "zgc:194177" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 80/250 (32%), Positives = 129/250 (51%)

Query:    81 VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXXXXXXXXXXXXSR 140
             + I+H + + +  VG Q+W+   +LADF++ +   SS F G                 + 
Sbjct:   168 IIIEHTMATPLEDVGKQIWRGAFLLADFILAQ---SSMFKGATVLELGAGTGLTSIVMAM 224

Query:   141 VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWMNPWPPIFSLGNSSASQ 199
             VA TV+ TD G  +L+ C +NV +N   F  Q S + VR L+WM      F    + A  
Sbjct:   225 VAKTVYCTDVGEDLLNMCQRNVTVNKQHFEPQESEIMVRQLDWM---ADDFC---TDADL 278

Query:   200 ERYSWNSSELKEVQ-RASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258
             E +SW   E+ ++    + ++AADV Y DDLTDALF T+ RL    S  +      Y+++
Sbjct:   279 E-FSWTDIEVADLHDNTTFVIAADVCYDDDLTDALFRTIYRL----SSNMRKPSTAYISI 333

Query:   259 EKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYD 318
             EKR NF+L  +DV    Y HFR + +++ +  +  + +F   + K      FPQ+  +Y+
Sbjct:   334 EKRLNFTLQHMDVSCEAYDHFR-HCLDQLQQMKDGKMNFKVELVKI----SFPQFF-QYE 387

Query:   319 RGNDVELWQI 328
             R   +ELW++
Sbjct:   388 RVEQLELWKV 397

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2384301 Mettl22 "methyltransferase like 22" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 78/252 (30%), Positives = 131/252 (51%)

Query:    81 VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXXXXXXXXXXXXSR 140
             + I+H + + +  VG QVW+  L+LAD+++ +      F G                 + 
Sbjct:   158 IKIEHTMATPLEDVGKQVWRGALLLADYILFRRDL---FQGCTVLELGAGTGLASIVAAT 214

Query:   141 VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV-HVRDLNWMNPWPPIFSLGNSSASQ 199
             +A TV+ TD G  +L  C +NV LNS + +  G V  V++L+W+       +L     + 
Sbjct:   215 MAHTVYCTDVGTDLLAMCQRNVALNSHLTATGGGVVKVKELDWLKD-----NLCTDPKAP 269

Query:   200 ERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL 258
               +SW+  E+ ++    +VLLAA+V Y DDLT+ALF+TL RL+     ++        ++
Sbjct:   270 --FSWSEEEIADLYDHTTVLLAAEVFYDDDLTNALFNTLSRLV----HRLKNACTAIFSV 323

Query:   259 EKRYNFSLNDLDVVANGYSHFRSYI--MEEGEHRRFERESFPAFVGKCIDLNEFPQYVRE 316
             EKR+NF+L  LDV    Y HFR+ +  +E+    R        F+ + ++ + FPQ +  
Sbjct:   324 EKRFNFTLRHLDVTCEAYDHFRASLDSLEKLADGRLR------FMVEPVEAS-FPQLL-V 375

Query:   317 YDRGNDVELWQI 328
             Y+R   +ELW+I
Sbjct:   376 YERIRQLELWKI 387

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

FB|FBgn0037045 CG10584 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 47/132 (35%), Positives = 70/132 (53%)

Query:   197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYL 256
             AS+E +S +   L+ +  + ++LAADVIY D LTDA    L  L+  G ++      +Y+
Sbjct:   157 ASKEDHSQDL--LEAIDNSDIILAADVIYCDTLTDAFICVLDNLLDRG-RQTGRPKTIYM 213

Query:   257 ALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVRE 316
             ALEKRY F+L D D VA  Y     Y++ +  ++ +  E  P          +FPQY  E
Sbjct:   214 ALEKRYVFTLEDCDSVAPMYE----YLIRQTVNKPWIMEHLPL---------DFPQYF-E 259

Query:   317 YDRGNDVELWQI 328
             YDR   + L +I
Sbjct:   260 YDRCKQLVLMKI 271

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	1e-15

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 34/174 (19%)

Query: 93  SVGLQVWKAELVLADFVMHKMCT-SSDFNGIISLELGAGTGLAGILLSRVAWT--VFLTD 149
            +G  VW A +VL+ ++  K+    ++ +G+  LELG+GTGL GI ++ +     V +TD
Sbjct: 16  GIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITD 75

Query: 150 HGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSEL 209
                ++   KN++LN         V  + L+W    P                      
Sbjct: 76  LEE-AIELMKKNIELN----GLSSKVTAKVLDWGEDLPDDVFDP---------------- 114

Query: 210 KEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYN 263
                  ++LAAD +Y++D    L  TL  L+           V+ +A +KR  
Sbjct: 115 ---HPVDLILAADCVYNEDSFPLLEKTLNDLLGK-------ETVILVAYKKRRE 158

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.96
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.75
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.73
COG3897	218	Predicted methyltransferase [General function pred	99.71
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.48
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.46
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.44
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.42
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.39
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.39
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.38
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.37
PRK11207	197	tellurite resistance protein TehB; Provisional	99.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.34
COG4123	248	Predicted O-methyltransferase [General function pr	99.32
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.31
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.29
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.26
PLN02244	340	tocopherol O-methyltransferase	99.26
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.25
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.24
PRK14968	188	putative methyltransferase; Provisional	99.22
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.22
PRK12335	287	tellurite resistance protein TehB; Provisional	99.21
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.2
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.2
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.19
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.19
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.18
PRK14967	223	putative methyltransferase; Provisional	99.18
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.18
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.17
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.16
KOG2920	282	consensus Predicted methyltransferase [General fun	99.16
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.15
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.14
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.14
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.14
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.13
PLN02336	475	phosphoethanolamine N-methyltransferase	99.13
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.12
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.12
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.11
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.11
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.11
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.1
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.1
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.1
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.1
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.09
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.09
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.08
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.07
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.07
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.06
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.05
PRK08317	241	hypothetical protein; Provisional	99.05
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.05
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.05
COG2890	280	HemK Methylase of polypeptide chain release factor	99.05
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.05
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.04
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.04
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.03
PLN02490	340	MPBQ/MSBQ methyltransferase	99.03
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.02
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.02
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.01
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.99
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.97
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.97
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.96
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.96
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.96
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.96
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.95
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.95
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.95
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.94
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.94
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.92
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.92
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.91
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.91
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.9
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.9
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.9
PRK05785	226	hypothetical protein; Provisional	98.89
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.89
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.89
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.87
PRK04266	226	fibrillarin; Provisional	98.86
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.86
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.85
KOG2497	262	consensus Predicted methyltransferase [General fun	98.85
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.83
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.82
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.81
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.81
PRK07402	196	precorrin-6B methylase; Provisional	98.8
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.78
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.77
PRK04148	134	hypothetical protein; Provisional	98.77
PLN02336	475	phosphoethanolamine N-methyltransferase	98.76
PLN03075	296	nicotianamine synthase; Provisional	98.75
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.74
PRK06922	677	hypothetical protein; Provisional	98.74
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.73
PRK06202	232	hypothetical protein; Provisional	98.73
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.73
PHA03411	279	putative methyltransferase; Provisional	98.72
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.72
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.68
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.67
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.67
PTZ00146	293	fibrillarin; Provisional	98.65
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.65
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.64
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.6
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.59
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.59
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.56
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.56
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.55
KOG1271	227	consensus Methyltransferases [General function pre	98.55
PLN02672	1082	methionine S-methyltransferase	98.55
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.54
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.53
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.52
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.51
KOG4300	252	consensus Predicted methyltransferase [General fun	98.51
KOG3010	261	consensus Methyltransferase [General function pred	98.5
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.5
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.49
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.49
TIGR03438	301	probable methyltransferase. This model represents	98.48
KOG2904	328	consensus Predicted methyltransferase [General fun	98.48
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.47
PRK04457	262	spermidine synthase; Provisional	98.45
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.45
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.45
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.45
PHA03412	241	putative methyltransferase; Provisional	98.44
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.41
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.41
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.38
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.38
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.38
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.37
PLN02476	278	O-methyltransferase	98.36
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.35
COG4122	219	Predicted O-methyltransferase [General function pr	98.34
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.34
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.34
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.31
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.31
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.31
PRK00811	283	spermidine synthase; Provisional	98.3
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.27
TIGR00438	188	rrmJ cell division protein FtsJ.	98.26
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.24
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.23
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.23
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.18
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.18
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.17
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.16
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.14
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.14
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.13
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.1
PRK01581	374	speE spermidine synthase; Validated	98.09
PRK03612	521	spermidine synthase; Provisional	98.05
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.03
PLN02366	308	spermidine synthase	98.02
KOG2361	264	consensus Predicted methyltransferase [General fun	97.91
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.89
COG4076	252	Predicted RNA methylase [General function predicti	97.86
KOG2899	288	consensus Predicted methyltransferase [General fun	97.85
COG2520	341	Predicted methyltransferase [General function pred	97.83
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.79
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.75
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.67
PLN02823	336	spermine synthase	97.65
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.6
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.57
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.57
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.49
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.48
PRK00536	262	speE spermidine synthase; Provisional	97.39
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.25
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.24
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.24
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.19
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.17
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.16
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.15
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.15
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.13
PHA01634	156	hypothetical protein	97.09
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.04
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.03
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.94
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.93
COG2521	287	Predicted archaeal methyltransferase [General func	96.93
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.91
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.9
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.83
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.82
PF13679	141	Methyltransf_32: Methyltransferase domain	96.75
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.72
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.7
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.69
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.6
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.58
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.44
PRK10742	250	putative methyltransferase; Provisional	96.42
KOG2940	325	consensus Predicted methyltransferase [General fun	96.4
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.32
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.24
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.21
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.17
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.14
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.13
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.1
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.95
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.94
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	95.92
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.81
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.63
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.39
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.06
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	95.05
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.0
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.77
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.72
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.64
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	94.6
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	94.15
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.93
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	93.76
COG1568	354	Predicted methyltransferases [General function pre	93.55
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.55
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	93.46
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.28
COG4262	508	Predicted spermidine synthase with an N-terminal m	92.98
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	92.82
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.3
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.23
KOG1227	351	consensus Putative methyltransferase [General func	91.64
COG3129	292	Predicted SAM-dependent methyltransferase [General	91.35
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.28
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	91.01
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	90.82
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.78
PRK11524	284	putative methyltransferase; Provisional	90.38
KOG2730	263	consensus Methylase [General function prediction o	89.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	89.5
PRK13699	227	putative methylase; Provisional	89.36
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	89.24
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	88.91
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	88.75
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	88.43
COG1565	370	Uncharacterized conserved protein [Function unknow	87.99
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	87.35
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	85.76
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	85.6
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	84.71
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	83.71
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	82.98
KOG2671	421	consensus Putative RNA methylase [Replication, rec	82.98
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	82.19
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	81.91
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	80.82
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	80.15

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.96  E-value=1.1e-29  Score=221.69  Aligned_cols=155  Identities=36%  Similarity=0.584  Sum_probs=97.5

Q ss_pred             eeEEEecccccCCCCccceeehhHHHHHHHHHhhcC---CCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchH
Q 019839           79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMC---TSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNY  153 (335)
Q Consensus        79 ~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~---~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~  153 (335)
                      ..+.|++...   .++|.++|++|++|++||.....   .+..+++++|||||||+|++||++|+.  +++|++||+++ 
T Consensus         4 ~~l~i~e~~~---~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-   79 (173)
T PF10294_consen    4 KTLQIEEDWG---DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-   79 (173)
T ss_dssp             ----------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--
T ss_pred             cccccccccc---cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-
Confidence            3555555532   47899999999999999998521   135689999999999999999999999  68999999997 


Q ss_pred             HHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHH
Q 019839          154 ILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDAL  233 (335)
Q Consensus       154 ~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L  233 (335)
                      ++++++.|++.|....  ..++.+..++|++....                   +.....+||+||||||+|+++.+++|
T Consensus        80 ~l~~l~~Ni~~N~~~~--~~~v~v~~L~Wg~~~~~-------------------~~~~~~~~D~IlasDv~Y~~~~~~~L  138 (173)
T PF10294_consen   80 VLELLRRNIELNGSLL--DGRVSVRPLDWGDELDS-------------------DLLEPHSFDVILASDVLYDEELFEPL  138 (173)
T ss_dssp             HHHHHHHHHHTT----------EEEE--TTS-HHH-------------------HHHS-SSBSEEEEES--S-GGGHHHH
T ss_pred             hhHHHHHHHHhccccc--cccccCcEEEecCcccc-------------------cccccccCCEEEEecccchHHHHHHH
Confidence            9999999999997422  57899999999985211                   11123589999999999999999999


Q ss_pred             HHHHHHhccCCCcceeeceEEEEEEeeecccc
Q 019839          234 FHTLKRLMPLGSKKVLVNMVLYLALEKRYNFS  265 (335)
Q Consensus       234 ~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft  265 (335)
                      ++||.+++++++.       +|+++++|....
T Consensus       139 ~~tl~~ll~~~~~-------vl~~~~~R~~~~  163 (173)
T PF10294_consen  139 VRTLKRLLKPNGK-------VLLAYKRRRKSE  163 (173)
T ss_dssp             HHHHHHHBTT-TT-------EEEEEE-S-TGG
T ss_pred             HHHHHHHhCCCCE-------EEEEeCEecHHH
Confidence            9999999998773       899999997643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.1e-18  Score=146.64  Aligned_cols=148  Identities=26%  Similarity=0.348  Sum_probs=114.9

Q ss_pred             Ccc-ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCC
Q 019839           93 SVG-LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGV  168 (335)
Q Consensus        93 ~~G-~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~  168 (335)
                      .+| ..+||+...||.+++..   +..++|++|||||.| |||.||++|..+  +.|..||.++..+.++++-+..|...
T Consensus         4 ntgnvciwpseeala~~~l~~---~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s   80 (201)
T KOG3201|consen    4 NTGNVCIWPSEEALAWTILRD---PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS   80 (201)
T ss_pred             CCCcEEecccHHHHHHHHHhc---hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc
Confidence            344 68999999999999987   477999999999999 999999999885  68999999999999999988888432


Q ss_pred             CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .  ..++.+.+..|....                     ...+...||+|+||||+|.++..++|++||+.+|+|.|+  
T Consensus        81 ~--~tsc~vlrw~~~~aq---------------------sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~--  135 (201)
T KOG3201|consen   81 S--LTSCCVLRWLIWGAQ---------------------SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR--  135 (201)
T ss_pred             c--cceehhhHHHHhhhH---------------------HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc--
Confidence            1  234433333332221                     112344899999999999999999999999999999886  


Q ss_pred             eeceEEEEEEeeeccccccchhhhhhhhhHHHHHHh
Q 019839          249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIM  284 (335)
Q Consensus       249 ~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~  284 (335)
                           +++...+|-+           ..+.|+.+..
T Consensus       136 -----Al~fsPRRg~-----------sL~kF~de~~  155 (201)
T KOG3201|consen  136 -----ALLFSPRRGQ-----------SLQKFLDEVG  155 (201)
T ss_pred             -----eeEecCcccc-----------hHHHHHHHHH
Confidence                 3455566765           3566776664

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.73  E-value=1.8e-17  Score=150.79  Aligned_cols=144  Identities=31%  Similarity=0.434  Sum_probs=116.7

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCC------CCCC--CCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHH
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTS------SDFN--GIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~------~~~~--g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv  162 (335)
                      ......+|+++-.+|.++.....++      ..++  .++|||||+|||++|+.+|.. ++.|++||.. .++.+++.|.
T Consensus        50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~  128 (248)
T KOG2793|consen   50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNR  128 (248)
T ss_pred             cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhh
Confidence            4567899999999999998875311      1122  457999999999999999995 7899999996 7888888887


Q ss_pred             HHccCCCCC-CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCC-ccEEEEeccccCcccHHHHHHHHHHh
Q 019839          163 QLNSGVFSH-QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRL  240 (335)
Q Consensus       163 ~~N~~~~~~-~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-fDlIlasDviY~~~~~~~L~~tl~~l  240 (335)
                      ..|....+. ...+.+..|+|++.....+                    ..+. +|+||||||+|++...+.|+.+++.+
T Consensus       129 ~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~--------------------~~~~~~DlilasDvvy~~~~~e~Lv~tla~l  188 (248)
T KOG2793|consen  129 DKNNIALNQLGGSVIVAILVWGNALDVSF--------------------RLPNPFDLILASDVVYEEESFEGLVKTLAFL  188 (248)
T ss_pred             hhhhhhhhhcCCceeEEEEecCCcccHhh--------------------ccCCcccEEEEeeeeecCCcchhHHHHHHHH
Confidence            777655443 4589999999999854321                    1233 99999999999999999999999999


Q ss_pred             ccCCCcceeeceEEEEEEeeecc
Q 019839          241 MPLGSKKVLVNMVLYLALEKRYN  263 (335)
Q Consensus       241 L~~~~~~~~~~p~i~ia~~~R~~  263 (335)
                      |..++  +     +++++..|..
T Consensus       189 l~~~~--~-----i~l~~~lr~~  204 (248)
T KOG2793|consen  189 LAKDG--T-----IFLAYPLRRD  204 (248)
T ss_pred             HhcCC--e-----EEEEEecccc
Confidence            99877  5     8899988864

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.71  E-value=1.7e-17  Score=143.79  Aligned_cols=137  Identities=23%  Similarity=0.332  Sum_probs=112.3

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS  170 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~  170 (335)
                      +..+...|.+.+.||+|+..+   +..++||+|||+|+|.||++|++|+.| +.|+.+|+.|....+++.|++.|+    
T Consensus        54 Ppfwa~~WagG~~lAR~i~~~---PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang----  126 (218)
T COG3897          54 PPFWAFAWAGGQVLARYIDDH---PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG----  126 (218)
T ss_pred             chHHHHHHhhhHHHHHHHhcC---ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc----
Confidence            457789999999999999998   588999999999999999999999997 579999999999999999999997    


Q ss_pred             CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839          171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~  250 (335)
                        ..+.+...|-...                          ...||+||++|++|+....+.|+.++.++...|. .   
T Consensus       127 --v~i~~~~~d~~g~--------------------------~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~-~---  174 (218)
T COG3897         127 --VSILFTHADLIGS--------------------------PPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA-A---  174 (218)
T ss_pred             --ceeEEeeccccCC--------------------------CcceeEEEeeceecCchHHHHHHHHHHHHHhCCC-E---
Confidence              3455555543331                          3479999999999999999999997777766543 3   


Q ss_pred             ceEEEEEEeeeccccccchh
Q 019839          251 NMVLYLALEKRYNFSLNDLD  270 (335)
Q Consensus       251 ~p~i~ia~~~R~~ft~~~~d  270 (335)
                         +++.-..|..+-.+++.
T Consensus       175 ---vlvgdp~R~~lpk~~l~  191 (218)
T COG3897         175 ---VLVGDPGRAYLPKKRLE  191 (218)
T ss_pred             ---EEEeCCCCCCCchhhhh
Confidence               55666667666555553

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.48  E-value=1.1e-13  Score=124.47  Aligned_cols=108  Identities=16%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +.|++|||+|||-|+++..+|+.|++|++.|.++.+++.++..+..|...           .+|.....           
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-----------i~y~~~~~-----------  115 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-----------IDYRQATV-----------  115 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-----------ccchhhhH-----------
Confidence            78999999999999999999999999999999999999999998887632           23332210           


Q ss_pred             ccccccCcchhh-ccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeecc
Q 019839          199 QERYSWNSSELK-EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYN  263 (335)
Q Consensus       199 ~~~~~w~~~~~~-~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~  263 (335)
                              .++. ..++||+|++.+|+.|.++.+.+++.+.++++|+|  .     ++++.-.|+.
T Consensus       116 --------edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G--~-----lf~STinrt~  166 (243)
T COG2227         116 --------EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG--I-----LFLSTINRTL  166 (243)
T ss_pred             --------HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc--E-----EEEeccccCH
Confidence                    1122 23699999999999999999999999999999987  4     6777777754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.46  E-value=1.5e-12  Score=113.21  Aligned_cols=111  Identities=18%  Similarity=0.264  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      .++.+|++++...       ++++|||||||+|.+|+.+++.+.  +|+++|+++.+++.+++|++.|..     .++.+
T Consensus        18 ~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~   85 (170)
T PF05175_consen   18 AGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----ENVEV   85 (170)
T ss_dssp             HHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEE
T ss_pred             HHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccc
Confidence            4677888888654       678999999999999999999864  599999999999999999999984     33888


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCCc
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~~  246 (335)
                      ...|+.+..+                        ..+||+|++.-.++...     ....+++...++|+++|.
T Consensus        86 ~~~d~~~~~~------------------------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~  135 (170)
T PF05175_consen   86 VQSDLFEALP------------------------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR  135 (170)
T ss_dssp             EESSTTTTCC------------------------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred             cccccccccc------------------------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence            8888876532                        35899999998876653     468889999999999884

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.44  E-value=8e-13  Score=105.95  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHH--hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~--~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +|.+|||||||+|..++.+++  .+.+|++.|+++.+++.+++|+..+..    ..++++...|+ ...           
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~-~~~-----------   64 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDA-EFD-----------   64 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCC-HGG-----------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECcc-ccC-----------
Confidence            578999999999999999999  589999999999999999999965543    57899999888 210           


Q ss_pred             cccccccCcchhhccCCccEEEEec-ccc---CcccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAAD-VIY---SDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasD-viY---~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 .....+||+|++.. +..   +.+....+++.+.++|+|+|..
T Consensus        65 -----------~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  107 (112)
T PF12847_consen   65 -----------PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRL  107 (112)
T ss_dssp             -----------TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             -----------cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEE
Confidence                       11234799999998 332   1245678899999999998743

...

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.42  E-value=3.2e-12  Score=120.15  Aligned_cols=126  Identities=16%  Similarity=0.209  Sum_probs=90.3

Q ss_pred             CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839           77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL  155 (335)
Q Consensus        77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l  155 (335)
                      ....|.|.++|+     .|.=.-+.+.+-.++|.+.     ..+|++|||+|||+|++||+++++|+ +|+++|++|.++
T Consensus       128 ~~~~I~idPg~A-----FGTG~H~TT~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av  197 (295)
T PF06325_consen  128 DEIVIEIDPGMA-----FGTGHHPTTRLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV  197 (295)
T ss_dssp             TSEEEEESTTSS-----S-SSHCHHHHHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH
T ss_pred             CcEEEEECCCCc-----ccCCCCHHHHHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH
Confidence            456788888887     3333445777777777765     36889999999999999999999975 899999999999


Q ss_pred             HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839          156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH  235 (335)
Q Consensus       156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~  235 (335)
                      +.++.|++.|+..    .++.+.   ...+.                        ..++||+|+|.  |. .+..-.++.
T Consensus       198 ~~a~~N~~~N~~~----~~~~v~---~~~~~------------------------~~~~~dlvvAN--I~-~~vL~~l~~  243 (295)
T PF06325_consen  198 EAARENAELNGVE----DRIEVS---LSEDL------------------------VEGKFDLVVAN--IL-ADVLLELAP  243 (295)
T ss_dssp             HHHHHHHHHTT-T----TCEEES---CTSCT------------------------CCS-EEEEEEE--S--HHHHHHHHH
T ss_pred             HHHHHHHHHcCCC----eeEEEE---Eeccc------------------------ccccCCEEEEC--CC-HHHHHHHHH
Confidence            9999999999863    345442   11110                        12589999984  11 123345778


Q ss_pred             HHHHhccCCCc
Q 019839          236 TLKRLMPLGSK  246 (335)
Q Consensus       236 tl~~lL~~~~~  246 (335)
                      .+.++|+++|.
T Consensus       244 ~~~~~l~~~G~  254 (295)
T PF06325_consen  244 DIASLLKPGGY  254 (295)
T ss_dssp             HCHHHEEEEEE
T ss_pred             HHHHhhCCCCE
Confidence            88889998874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.39  E-value=7.3e-13  Score=120.12  Aligned_cols=113  Identities=15%  Similarity=0.263  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+-|++|||+|||+||+|..+|+.|++|++.|.++++++.++.....+-..   ...+ +..+...+...          
T Consensus        87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~---~~~~-~y~l~~~~~~~----------  152 (282)
T KOG1270|consen   87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL---EGAI-AYRLEYEDTDV----------  152 (282)
T ss_pred             ccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh---cccc-ceeeehhhcch----------
Confidence            356799999999999999999999999999999999999998875444322   1211 12232222211          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeec
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRY  262 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~  262 (335)
                                 ....++||.|+|++|+.|..+...+++.+.++|+|+|.       +||+..+|.
T Consensus       153 -----------E~~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~-------lfittinrt  199 (282)
T KOG1270|consen  153 -----------EGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR-------LFITTINRT  199 (282)
T ss_pred             -----------hhcccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc-------eEeeehhhh
Confidence                       01234699999999999999999999999999999874       677777774

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.39  E-value=1.9e-11  Score=106.92  Aligned_cols=109  Identities=21%  Similarity=0.277  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +.+|.+++.       ..++++|||||||+|..++.+++.+.+|+++|+++.+++.+++|+..|+      .++.+...|
T Consensus         8 ~~~l~~~l~-------~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d   74 (179)
T TIGR00537         8 SLLLEANLR-------ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN------VGLDVVMTD   74 (179)
T ss_pred             HHHHHHHHH-------hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEcc
Confidence            455666652       3567899999999999999999998899999999999999999999876      246667777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc---------------------cHHHHHHHHHHh
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLKRL  240 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------------------~~~~L~~tl~~l  240 (335)
                      +.+..                         .++||+|+++..++...                     ....+++.+.++
T Consensus        75 ~~~~~-------------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (179)
T TIGR00537        75 LFKGV-------------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI  129 (179)
T ss_pred             ccccc-------------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh
Confidence            65431                         23799999987665332                     146789999999


Q ss_pred             ccCCCcce
Q 019839          241 MPLGSKKV  248 (335)
Q Consensus       241 L~~~~~~~  248 (335)
                      |+++|..+
T Consensus       130 Lk~gG~~~  137 (179)
T TIGR00537       130 LKEGGRVQ  137 (179)
T ss_pred             hCCCCEEE
Confidence            99988543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=4.8e-12  Score=118.29  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839           77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL  155 (335)
Q Consensus        77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l  155 (335)
                      +...|.|.++++-   ++|  .-+.+.+-.++|...     ..+|++|||+|||+|+++|+++++|+ +|+++|++|.++
T Consensus       129 ~~~~i~lDPGlAF---GTG--~HpTT~lcL~~Le~~-----~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV  198 (300)
T COG2264         129 DELNIELDPGLAF---GTG--THPTTSLCLEALEKL-----LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV  198 (300)
T ss_pred             CceEEEEcccccc---CCC--CChhHHHHHHHHHHh-----hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence            3556778888873   233  334555555665543     36999999999999999999999986 699999999999


Q ss_pred             HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839          156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH  235 (335)
Q Consensus       156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~  235 (335)
                      +.++.|+++|+...    .+.+...   ...                     .....++||+|+|.  | --+.+..|..
T Consensus       199 ~aa~eNa~~N~v~~----~~~~~~~---~~~---------------------~~~~~~~~DvIVAN--I-LA~vl~~La~  247 (300)
T COG2264         199 EAARENARLNGVEL----LVQAKGF---LLL---------------------EVPENGPFDVIVAN--I-LAEVLVELAP  247 (300)
T ss_pred             HHHHHHHHHcCCch----hhhcccc---cch---------------------hhcccCcccEEEeh--h-hHHHHHHHHH
Confidence            99999999998521    1111111   110                     11233599999994  1 1233447888


Q ss_pred             HHHHhccCCCcce
Q 019839          236 TLKRLMPLGSKKV  248 (335)
Q Consensus       236 tl~~lL~~~~~~~  248 (335)
                      -+.++++|+|..+
T Consensus       248 ~~~~~lkpgg~lI  260 (300)
T COG2264         248 DIKRLLKPGGRLI  260 (300)
T ss_pred             HHHHHcCCCceEE
Confidence            9999999988543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.37  E-value=5.5e-12  Score=120.24  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ++|.+|||+|||+|..++.+++.|.+|++.|.++++++.++.++..+..    ..++.+...+-.+.             
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l-------------  192 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKL-------------  192 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHh-------------
Confidence            5788999999999999999999999999999999999999988766542    23455555442221             


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                ....++||+|++.+|++|....+.+++.+.++|+|||.
T Consensus       193 ----------~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~  230 (322)
T PLN02396        193 ----------ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA  230 (322)
T ss_pred             ----------hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence                      01235899999999999999999999999999999884

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.36  E-value=1.2e-11  Score=109.97  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||+|||+|..++.+|+.|.+|++.|+++.+++.+++++..++.     .++.+...|+.+..           
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~-----------   91 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLT-----------   91 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCC-----------
Confidence            35678999999999999999999999999999999999999999887653     34666666654321           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..++||+|+++.++|+.  +....+++.+.++|+++|..+
T Consensus        92 -------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207         92 -------------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             -------------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                         12379999999998764  467899999999999998643

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.34  E-value=2.2e-11  Score=121.35  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=106.1

Q ss_pred             eeehh-HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKA-ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~a-a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      |+.+. +..|.+.+....   ...++.+|||||||+|..++.+|+.+++|+++|.++.+++.+++|+..|+.     .++
T Consensus       276 q~n~~~~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v  347 (443)
T PRK13168        276 QVNAQVNQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-----DNV  347 (443)
T ss_pred             EcCHHHHHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce
Confidence            44443 466777776653   335678999999999999999999999999999999999999999999873     468


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEE
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLY  255 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~  255 (335)
                      .+...|+.+.....                   .....+||+|++ |.=|.-  ....++.|.+   ...+.+     +|
T Consensus       348 ~~~~~d~~~~l~~~-------------------~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~---~~~~~i-----vy  397 (443)
T PRK13168        348 TFYHANLEEDFTDQ-------------------PWALGGFDKVLL-DPPRAG--AAEVMQALAK---LGPKRI-----VY  397 (443)
T ss_pred             EEEEeChHHhhhhh-------------------hhhcCCCCEEEE-CcCCcC--hHHHHHHHHh---cCCCeE-----EE
Confidence            88888876532110                   001246999987 322321  2233444444   344557     99


Q ss_pred             EEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839          256 LALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR  319 (335)
Q Consensus       256 ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer  319 (335)
                      ++|.         +...+.....+..                .||+++++.+.| |||.. |.|-
T Consensus       398 vSCn---------p~tlaRDl~~L~~----------------~gY~l~~i~~~DmFP~T~-HvE~  436 (443)
T PRK13168        398 VSCN---------PATLARDAGVLVE----------------AGYRLKRAGMLDMFPHTG-HVES  436 (443)
T ss_pred             EEeC---------hHHhhccHHHHhh----------------CCcEEEEEEEeccCCCCC-cEEE
Confidence            9982         2233333222221                478888886555 99987 5554

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=113.14  Aligned_cols=124  Identities=17%  Similarity=0.235  Sum_probs=102.6

Q ss_pred             CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839           93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFS  170 (335)
Q Consensus        93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~  170 (335)
                      ..|.+.--.+++|+.|+.       ....++|||||||+|++||++|+. . ++|++.++.+.+.+++++|++.|..   
T Consensus        24 ~~~~~~~~DaiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l---   93 (248)
T COG4123          24 RCGFRYGTDAILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL---   93 (248)
T ss_pred             CCccccccHHHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc---
Confidence            357777779999999973       334889999999999999999988 4 7999999999999999999999886   


Q ss_pred             CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc------------------cHHH
Q 019839          171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD------------------LTDA  232 (335)
Q Consensus       171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------------------~~~~  232 (335)
                       ..++++...|..+.....                     ...+||+|++.-..|...                  .++.
T Consensus        94 -~~ri~v~~~Di~~~~~~~---------------------~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~  151 (248)
T COG4123          94 -EERIQVIEADIKEFLKAL---------------------VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLED  151 (248)
T ss_pred             -hhceeEehhhHHHhhhcc---------------------cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHH
Confidence             578999998877653321                     223799999998888753                  2788


Q ss_pred             HHHHHHHhccCCCcce
Q 019839          233 LFHTLKRLMPLGSKKV  248 (335)
Q Consensus       233 L~~tl~~lL~~~~~~~  248 (335)
                      ++++..++|+++|...
T Consensus       152 ~i~~a~~~lk~~G~l~  167 (248)
T COG4123         152 LIRAAAKLLKPGGRLA  167 (248)
T ss_pred             HHHHHHHHccCCCEEE
Confidence            9999999999998643

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.31  E-value=2e-11  Score=103.81  Aligned_cols=100  Identities=16%  Similarity=0.220  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCccCHHHHHHH-Hh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLS-RV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la-~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ++.+|||||||+|..++.++ +.  +++|++.|+++.+++.++.+++.++     ..++++...|+.+. +..       
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-----~~ni~~~~~d~~~l-~~~-------   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-----LDNIEFIQGDIEDL-PQE-------   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-----STTEEEEESBTTCG-CGC-------
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-----ccccceEEeehhcc-ccc-------
Confidence            57899999999999999999 44  6799999999999999999998877     34799999998873 210       


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  .  ..+||+|++..++|+......+++.+.++|+++|.
T Consensus        70 ------------~--~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~  105 (152)
T PF13847_consen   70 ------------L--EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGI  105 (152)
T ss_dssp             ------------S--STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEE
T ss_pred             ------------c--CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcE
Confidence                        0  15899999999999999999999999999999873

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.29  E-value=4.4e-11  Score=106.28  Aligned_cols=100  Identities=12%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+|+.|.+|+++|+++.+++.+++++..++.      ++.+...|.....            
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~------------   90 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAA------------   90 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcc------------
Confidence            4567999999999999999999999999999999999999998877652      2444444432210            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ...+||+|+++.++++.  +....+++.+.++|+|||..+
T Consensus        91 ------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477        91 ------------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             ------------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence                        12379999999998764  567789999999999988543

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.26  E-value=2.6e-11  Score=112.09  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||+|||+|..++.+++.+.+|+++|+++++++.+++++..++.    ..++.+...+..+..+           
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~-----------  107 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQ-----------  107 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhh-----------
Confidence            3567999999999999999999999999999999999999999887653    2456666655543210           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...+.||+|++..++++......+++.+.++|+|+|..
T Consensus       108 -----------~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l  145 (255)
T PRK11036        108 -----------HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL  145 (255)
T ss_pred             -----------hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence                       01358999999999999888899999999999998854

>PLN02244 tocopherol O-methyltransferase

Probab=99.26  E-value=1.1e-10  Score=112.40  Aligned_cols=103  Identities=12%  Similarity=0.013  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++.    ..++.+...|..+..-          
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~----------  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPF----------  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCC----------
Confidence            46789999999999999999886 78999999999999999999887753    3467777777654310          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..+.||+|++..++++......+++.+.++|+|||..+
T Consensus       183 -------------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lv  220 (340)
T PLN02244        183 -------------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRII  220 (340)
T ss_pred             -------------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEE
Confidence                         23589999999999998889999999999999998644

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.25  E-value=3.1e-10  Score=106.89  Aligned_cols=126  Identities=16%  Similarity=0.272  Sum_probs=88.1

Q ss_pred             eeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHH
Q 019839           79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN  157 (335)
Q Consensus        79 ~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~  157 (335)
                      ..+.|.++++     .|.-..+...+..+++...     ..+|++|||+|||+|..++.+++.| .+|+++|+++.+++.
T Consensus       128 ~~i~ldpg~a-----FgtG~h~tt~l~l~~l~~~-----~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~  197 (288)
T TIGR00406       128 LIIMLDPGLA-----FGTGTHPTTSLCLEWLEDL-----DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES  197 (288)
T ss_pred             EEEEECCCCc-----ccCCCCHHHHHHHHHHHhh-----cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            4556666654     3333445555555655443     2578999999999999999999886 489999999999999


Q ss_pred             HHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHH
Q 019839          158 CAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL  237 (335)
Q Consensus       158 ~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl  237 (335)
                      +++|+..|...    ..+.+...+-..                         ...++||+|++.- +  ......++..+
T Consensus       198 a~~n~~~n~~~----~~~~~~~~~~~~-------------------------~~~~~fDlVvan~-~--~~~l~~ll~~~  245 (288)
T TIGR00406       198 ARKNAELNQVS----DRLQVKLIYLEQ-------------------------PIEGKADVIVANI-L--AEVIKELYPQF  245 (288)
T ss_pred             HHHHHHHcCCC----cceEEEeccccc-------------------------ccCCCceEEEEec-C--HHHHHHHHHHH
Confidence            99999998742    234443332110                         0124899999852 2  23445788899


Q ss_pred             HHhccCCCc
Q 019839          238 KRLMPLGSK  246 (335)
Q Consensus       238 ~~lL~~~~~  246 (335)
                      .++|+++|.
T Consensus       246 ~~~LkpgG~  254 (288)
T TIGR00406       246 SRLVKPGGW  254 (288)
T ss_pred             HHHcCCCcE
Confidence            999999884

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.24  E-value=4.4e-11  Score=92.14  Aligned_cols=92  Identities=18%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             EEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccc
Q 019839          125 LELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYS  203 (335)
Q Consensus       125 LELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~  203 (335)
                      ||+|||+|..+..+++. +.+|+++|.++.+++.++++...+        .+.+...+..+..-                
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~----------------   56 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPF----------------   56 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS----------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCcc----------------
Confidence            89999999999999999 899999999999999999877543        24466666555411                


Q ss_pred             cCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          204 WNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       204 w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                             ..+.||+|++..++++.+....+++.+.++|+++|..
T Consensus        57 -------~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l   93 (95)
T PF08241_consen   57 -------PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRL   93 (95)
T ss_dssp             --------TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEE
T ss_pred             -------ccccccccccccceeeccCHHHHHHHHHHHcCcCeEE
Confidence                   2458999999999999999999999999999998843

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14968 putative methyltransferase; Provisional

Probab=99.22  E-value=1.9e-10  Score=100.57  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=88.6

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      .-|+.+.+|++++..       .++++|||+|||+|..++.++..+.+|+++|+++++++.+++|+..|...   ...+.
T Consensus         7 ~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~   76 (188)
T PRK14968          7 EPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR---NNGVE   76 (188)
T ss_pred             CcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC---CcceE
Confidence            345667777777632       57789999999999999999999999999999999999999999887642   11266


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---------------------cccHHHHHH
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------------DDLTDALFH  235 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------------------~~~~~~L~~  235 (335)
                      +...|+.+...                        ...||+|++...++.                     ......+++
T Consensus        77 ~~~~d~~~~~~------------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (188)
T PRK14968         77 VIRSDLFEPFR------------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLD  132 (188)
T ss_pred             EEecccccccc------------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHH
Confidence            66666654311                        127999998765543                     122566899


Q ss_pred             HHHHhccCCCcce
Q 019839          236 TLKRLMPLGSKKV  248 (335)
Q Consensus       236 tl~~lL~~~~~~~  248 (335)
                      .+.++|+++|..+
T Consensus       133 ~~~~~Lk~gG~~~  145 (188)
T PRK14968        133 EVGRYLKPGGRIL  145 (188)
T ss_pred             HHHHhcCCCeEEE
Confidence            9999999988543

>TIGR00452 methyltransferase, putative

Probab=99.22  E-value=1.8e-10  Score=109.43  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      -|.+-+.....+.+.    ...+|++|||+|||+|...+.++..|. .|++.|.++.++..++..-..-..    ..++.
T Consensus       103 e~~s~~~~~~~l~~l----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~  174 (314)
T TIGR00452       103 EWRSDIKWDRVLPHL----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----DKRAI  174 (314)
T ss_pred             HHHHHHHHHHHHHhc----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc----CCCeE
Confidence            465555544444332    457899999999999999888888864 799999999888654322211110    23455


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +..++..+..                        ....||+|++..++||......+++.+++.|++||..+
T Consensus       175 ~~~~~ie~lp------------------------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lv  222 (314)
T TIGR00452       175 LEPLGIEQLH------------------------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELV  222 (314)
T ss_pred             EEECCHHHCC------------------------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEE
Confidence            6555543321                        12379999999999999999999999999999998755

Known examples to date are restricted to the proteobacteria.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.21  E-value=1.3e-10  Score=109.29  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.|.+|+++|+++.+++.++.|+..++.      ++.+...|.....            
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~------------  180 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSAS------------  180 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhccc------------
Confidence            4567999999999999999999999999999999999999999987752      4555555543321            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ..++||+|++..++++.  +....+++.+.++|+++|..
T Consensus       181 ------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~  219 (287)
T PRK12335        181 ------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYN  219 (287)
T ss_pred             ------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence                        13489999999998864  46788999999999998854

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.20  E-value=2.3e-10  Score=100.57  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ++|++|||+|||+|..++.+|..+  .+|++.|.++.+++.+++|++.++.     .++.+...|+.+..          
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~----------  105 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQ----------  105 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhcc----------
Confidence            468999999999999999988764  6899999999999999999988762     35778777765421          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ..++||+|++.- +   ...+.+++.+.++|+++|..
T Consensus       106 --------------~~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG~l  138 (181)
T TIGR00138       106 --------------HEEQFDVITSRA-L---ASLNVLLELTLNLLKVGGYF  138 (181)
T ss_pred             --------------ccCCccEEEehh-h---hCHHHHHHHHHHhcCCCCEE
Confidence                          134899998743 2   34566888999999998843

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.20  E-value=3.1e-10  Score=108.53  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      .-|++-+... .+....   ..++|++|||+|||+|..++.++..| ..|++.|.++.++...+........    ..++
T Consensus       103 ~ew~s~~k~~-~l~~~l---~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i  174 (322)
T PRK15068        103 TEWRSDWKWD-RVLPHL---SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN----DQRA  174 (322)
T ss_pred             ceehHHhHHH-HHHHhh---CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC----CCCe
Confidence            3566544433 233332   45789999999999999999999886 4799999998777543332222111    2457


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+...+..+..                        ....||+|++..++||......+++.+.+.|++||..+
T Consensus       175 ~~~~~d~e~lp------------------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv  223 (322)
T PRK15068        175 HLLPLGIEQLP------------------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV  223 (322)
T ss_pred             EEEeCCHHHCC------------------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence            77776655431                        13479999999999999999999999999999988654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.19  E-value=3.9e-10  Score=99.64  Aligned_cols=95  Identities=18%  Similarity=0.103  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|++.|+.     .++++...+..+..           
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~-----------  108 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFG-----------  108 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCC-----------
Confidence            3899999999999999999875  57999999999999999999999873     34777777654421           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                   ..++||+|++..    ....+.+++.+.++|+++|..
T Consensus       109 -------------~~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107        109 -------------QEEKFDVVTSRA----VASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             -------------CCCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEE
Confidence                         134899999864    245678999999999998854

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.19  E-value=4.3e-10  Score=109.32  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +.+|||||||+|.+|+.+++.  +.+|+++|.++.+++.++.|++.|....  ..++.+..-|.....            
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~~~------------  294 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSGV------------  294 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEccccccC------------
Confidence            469999999999999999987  4799999999999999999999996321  124555544433221            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc-----ccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~-----~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...+||+|++.-.++..     .....+++...++|+++|.
T Consensus       295 ------------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~  335 (378)
T PRK15001        295 ------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE  335 (378)
T ss_pred             ------------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence                        12479999997666543     2456788999999999884

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.18  E-value=1.1e-09  Score=101.02  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=88.8

Q ss_pred             CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHH
Q 019839           77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYIL  155 (335)
Q Consensus        77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l  155 (335)
                      ....+.|.++++     .|.-..+.+..+.+++...     ..++++|||+|||+|..++.+++.|. +|+++|+++.++
T Consensus        86 ~~~~i~i~p~~a-----fgtg~h~tt~~~l~~l~~~-----~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l  155 (250)
T PRK00517         86 DEINIELDPGMA-----FGTGTHPTTRLCLEALEKL-----VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV  155 (250)
T ss_pred             CeEEEEECCCCc-----cCCCCCHHHHHHHHHHHhh-----cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH
Confidence            445677777765     3333366777777777653     25789999999999999999998875 599999999999


Q ss_pred             HHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHH
Q 019839          156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH  235 (335)
Q Consensus       156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~  235 (335)
                      +.+++|+..|+..    ..+.+...                               ..+||+|++.-   .......++.
T Consensus       156 ~~A~~n~~~~~~~----~~~~~~~~-------------------------------~~~fD~Vvani---~~~~~~~l~~  197 (250)
T PRK00517        156 EAARENAELNGVE----LNVYLPQG-------------------------------DLKADVIVANI---LANPLLELAP  197 (250)
T ss_pred             HHHHHHHHHcCCC----ceEEEccC-------------------------------CCCcCEEEEcC---cHHHHHHHHH
Confidence            9999999988731    22221100                               11699999852   1234567888


Q ss_pred             HHHHhccCCCcc
Q 019839          236 TLKRLMPLGSKK  247 (335)
Q Consensus       236 tl~~lL~~~~~~  247 (335)
                      .+.++|+++|..
T Consensus       198 ~~~~~LkpgG~l  209 (250)
T PRK00517        198 DLARLLKPGGRL  209 (250)
T ss_pred             HHHHhcCCCcEE
Confidence            999999998843

>PRK14967 putative methyltransferase; Provisional

Probab=99.18  E-value=4.6e-10  Score=101.71  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      .+.+|++++...    ...++.+|||+|||+|..++.+++.+. +|+++|+++.+++.++.|+..|+      .++.+..
T Consensus        21 ds~~l~~~l~~~----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~   90 (223)
T PRK14967         21 DTQLLADALAAE----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDVDVRR   90 (223)
T ss_pred             cHHHHHHHHHhc----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEE
Confidence            456777777543    335678999999999999999998865 99999999999999999998875      2466677


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc---------------------cHHHHHHHHH
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLK  238 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------------------~~~~L~~tl~  238 (335)
                      .|+.+..                        ...+||+|++.-..+...                     ..+.+++.+.
T Consensus        91 ~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  146 (223)
T PRK14967         91 GDWARAV------------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAP  146 (223)
T ss_pred             Cchhhhc------------------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHH
Confidence            7765431                        124799999864433211                     1456788889


Q ss_pred             HhccCCCcc
Q 019839          239 RLMPLGSKK  247 (335)
Q Consensus       239 ~lL~~~~~~  247 (335)
                      ++|+++|..
T Consensus       147 ~~Lk~gG~l  155 (223)
T PRK14967        147 ALLAPGGSL  155 (223)
T ss_pred             HhcCCCcEE
Confidence            999998853

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.18  E-value=1e-09  Score=104.48  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||||||+|..++.+++.|.+|+++|+++.|++.+++|+...........++.+...|+.+.            
T Consensus       142 ~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------------  209 (315)
T PLN02585        142 SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------------  209 (315)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------------
Confidence            35788999999999999999999999999999999999999999865421100012345555554321            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHh
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRL  240 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~l  240 (335)
                                    .+.||+|++.++++|...  ...+++.+.++
T Consensus       210 --------------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l  240 (315)
T PLN02585        210 --------------SGKYDTVTCLDVLIHYPQDKADGMIAHLASL  240 (315)
T ss_pred             --------------CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence                          247999999999977543  33455555544

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.17  E-value=2.7e-10  Score=111.10  Aligned_cols=136  Identities=13%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+.+|||||||+|..|+.+|..+++|++.|+++.+++.+++|++.|+.     .++.+...|..+...           
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~~~~-----------  295 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAKFAT-----------  295 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHH-----------
Confidence            4578999999999999999999899999999999999999999999973     367777666543210           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhH
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSH  278 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~  278 (335)
                                 ....+||+|+. |.=|. .....+++.|..   ..++.+     +|+++.         ....+.....
T Consensus       296 -----------~~~~~~D~vi~-DPPr~-G~~~~~l~~l~~---~~p~~i-----vyvsc~---------p~TlaRDl~~  345 (374)
T TIGR02085       296 -----------AQMSAPELVLV-NPPRR-GIGKELCDYLSQ---MAPKFI-----LYSSCN---------AQTMAKDIAE  345 (374)
T ss_pred             -----------hcCCCCCEEEE-CCCCC-CCcHHHHHHHHh---cCCCeE-----EEEEeC---------HHHHHHHHHH
Confidence                       01135899887 33332 344455555544   334557     999982         2233333322


Q ss_pred             HHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839          279 FRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR  319 (335)
Q Consensus       279 f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer  319 (335)
                      +                  .||+++.+.+.| |||.. |.|-
T Consensus       346 L------------------~gy~l~~~~~~DmFPqT~-HvE~  368 (374)
T TIGR02085       346 L------------------SGYQIERVQLFDMFPHTS-HYEV  368 (374)
T ss_pred             h------------------cCceEEEEEEeccCCCCC-cEEE
Confidence            2                  168888875555 99987 6554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.16  E-value=2.3e-10  Score=109.03  Aligned_cols=104  Identities=11%  Similarity=0.066  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||||||+|..++.+|+.+++|++.|.++.+++.+++|++.|+.     .++++...|..+...           
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~-----------  235 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFAT-----------  235 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHH-----------
Confidence            4678999999999999999999999999999999999999999999873     457777666433210           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEe
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALE  259 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~  259 (335)
                                 .....||+|+..-. + ......+++.|.+   .+.+.+     +|+++.
T Consensus       236 -----------~~~~~~D~Vv~dPP-r-~G~~~~~~~~l~~---~~~~~i-----vyvsc~  275 (315)
T PRK03522        236 -----------AQGEVPDLVLVNPP-R-RGIGKELCDYLSQ---MAPRFI-----LYSSCN  275 (315)
T ss_pred             -----------hcCCCCeEEEECCC-C-CCccHHHHHHHHH---cCCCeE-----EEEECC
Confidence                       01236999987322 1 1223334444433   344557     999984

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=99.16  E-value=1.2e-11  Score=113.83  Aligned_cols=166  Identities=22%  Similarity=0.253  Sum_probs=107.3

Q ss_pred             ccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHH-HHHHHHc
Q 019839           88 TSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNC-AKNVQLN  165 (335)
Q Consensus        88 ~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~-~~Nv~~N  165 (335)
                      .+.....|+++|.++..|..++....-..-.+.||+|||||||+|+.+|.+.+.| ..|.++|++.++++.. -.|+..|
T Consensus        84 ~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~  163 (282)
T KOG2920|consen   84 VPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVN  163 (282)
T ss_pred             CCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecc
Confidence            4557789999999999999999865311245899999999999999999999998 7999999998888433 3444444


Q ss_pred             cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHH-HHHHHHhccCC
Q 019839          166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDAL-FHTLKRLMPLG  244 (335)
Q Consensus       166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L-~~tl~~lL~~~  244 (335)
                      .....          .|.+......-     ......+|.- ......+||+|++|..+|.......+ ..+...++++ 
T Consensus       164 ~~~~~----------~~~e~~~~~~i-----~~s~l~dg~~-~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~-  226 (282)
T KOG2920|consen  164 SHAGV----------EEKENHKVDEI-----LNSLLSDGVF-NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKT-  226 (282)
T ss_pred             hhhhh----------hhhhcccceec-----cccccccchh-hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCc-
Confidence            32110          01111000000     0000001200 00011389999999999999988888 4444444444 


Q ss_pred             CcceeeceEEEEEEeeeccccccchhhhhhhhhHHH-HHH
Q 019839          245 SKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFR-SYI  283 (335)
Q Consensus       245 ~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~-~~l  283 (335)
                       ..+     +|+|.++-|.       .|..+..+|+ +.+
T Consensus       227 -D~~-----~~~aAK~~yF-------gVgg~i~~f~~~~~  253 (282)
T KOG2920|consen  227 -DGV-----FYVAAKKLYF-------GVGGGIEEFNSKLM  253 (282)
T ss_pred             -cch-----hhhhhHhhcc-------CcCcchhhhccccc
Confidence             345     7888776654       5677888886 434

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.15  E-value=4.9e-10  Score=102.36  Aligned_cols=116  Identities=14%  Similarity=0.080  Sum_probs=79.1

Q ss_pred             ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839           96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ  172 (335)
Q Consensus        96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~  172 (335)
                      .+.|+.  .+.+.+       ...+|.+|||+|||||..++.+++. +  .+|+++|+++.||+.+++++....     .
T Consensus        32 ~~~wr~--~~~~~~-------~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~   97 (233)
T PF01209_consen   32 DRRWRR--KLIKLL-------GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----L   97 (233)
T ss_dssp             -----S--HHHHHH-------T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------
T ss_pred             HHHHHH--HHHhcc-------CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----C
Confidence            578988  344443       3357889999999999999998876 3  589999999999999999998765     2


Q ss_pred             CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .++.....|-.+..-                       ....||+|+++-.+.+.++....++.+.++|+|||..+
T Consensus        98 ~~i~~v~~da~~lp~-----------------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen   98 QNIEFVQGDAEDLPF-----------------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLV  150 (233)
T ss_dssp             -SEEEEE-BTTB--S------------------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred             CCeeEEEcCHHHhcC-----------------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence            467777766544311                       23589999999999998899999999999999998654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.14  E-value=2e-10  Score=97.46  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE-eccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR-DLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~-~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++++|||+|||+|..+..+++.+.+|+++|+++.+++.      .+       ...... ..++              
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-------~~~~~~~~~~~--------------   72 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-------VVFDNFDAQDP--------------   72 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-------SEEEEEECHTH--------------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-------hhhhhhhhhhh--------------
Confidence            4688999999999999999999999999999999988877      11       111111 1111              


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ....++||+|++++++++......+++.+.++|+|+|.
T Consensus        73 ------------~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~  110 (161)
T PF13489_consen   73 ------------PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY  110 (161)
T ss_dssp             ------------HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred             ------------hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence                        11245899999999999999999999999999999874

...

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.14  E-value=4.1e-10  Score=111.78  Aligned_cols=153  Identities=14%  Similarity=0.144  Sum_probs=97.6

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      ..|.+.+....   ..-.+.+|||||||+|..++.+|+.+.+|++.|.++.+++.+++|+..|+     ..++.+...|+
T Consensus       278 ~~l~~~~~~~l---~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~-----~~nv~~~~~d~  349 (431)
T TIGR00479       278 EKLVDRALEAL---ELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG-----IANVEFLAGTL  349 (431)
T ss_pred             HHHHHHHHHHh---ccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC-----CCceEEEeCCH
Confidence            34445554432   22356899999999999999999999999999999999999999999987     35678877776


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeec
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRY  262 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~  262 (335)
                      .+..+..                   ......||+|+.. .=+ ......+++.+.+ +++  +.+     +|+++.   
T Consensus       350 ~~~l~~~-------------------~~~~~~~D~vi~d-PPr-~G~~~~~l~~l~~-l~~--~~i-----vyvsc~---  397 (431)
T TIGR00479       350 ETVLPKQ-------------------PWAGQIPDVLLLD-PPR-KGCAAEVLRTIIE-LKP--ERI-----VYVSCN---  397 (431)
T ss_pred             HHHHHHH-------------------HhcCCCCCEEEEC-cCC-CCCCHHHHHHHHh-cCC--CEE-----EEEcCC---
Confidence            4421100                   0012368999862 212 1224556666655 344  346     888873   


Q ss_pred             cccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccC
Q 019839          263 NFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYD  318 (335)
Q Consensus       263 ~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~ye  318 (335)
                            +...+.....    |.+            .||+++.+.+.| |||.. |.|
T Consensus       398 ------p~tlard~~~----l~~------------~gy~~~~~~~~DmFP~T~-HvE  431 (431)
T TIGR00479       398 ------PATLARDLEF----LCK------------EGYGITWVQPVDMFPHTA-HVE  431 (431)
T ss_pred             ------HHHHHHHHHH----HHH------------CCeeEEEEEEeccCCCCC-CCC
Confidence                  2222222222    211            367777775555 99987 543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.14  E-value=5.4e-10  Score=103.88  Aligned_cols=119  Identities=8%  Similarity=0.045  Sum_probs=88.0

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      ++-++++--+..++...   ...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++.+...       ..++
T Consensus        32 ~~~~gg~~~~~~~l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i  101 (263)
T PTZ00098         32 YISSGGIEATTKILSDI---ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKI  101 (263)
T ss_pred             CCCCCchHHHHHHHHhC---CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCce
Confidence            33344444455555543   4467889999999999988888764 67999999999999999887643       1356


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+...|..+..-                       ..++||+|++.+++++..  ....+++.+.++|+|||..+
T Consensus       102 ~~~~~D~~~~~~-----------------------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv  153 (263)
T PTZ00098        102 EFEANDILKKDF-----------------------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL  153 (263)
T ss_pred             EEEECCcccCCC-----------------------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            777766553210                       134899999999988754  77889999999999998654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=8.8e-10  Score=102.39  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      ++...-.+.+++..   .+-+|++|||+|||-|.+++.+|+. +.+|++++++++.++.+++.+..-+.    ..+++++
T Consensus        55 eAQ~~k~~~~~~kl---~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~  127 (283)
T COG2230          55 EAQRAKLDLILEKL---GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVR  127 (283)
T ss_pred             HHHHHHHHHHHHhc---CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEE
Confidence            34445556677664   6678999999999999999999998 89999999999999999998887664    3589999


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..||.+.+                          ++||-|++.+++.+...  .+.+++.+.++|+++|..+
T Consensus       128 l~d~rd~~--------------------------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~l  173 (283)
T COG2230         128 LQDYRDFE--------------------------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRML  173 (283)
T ss_pred             eccccccc--------------------------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence            99999863                          25999999999999755  9999999999999998754

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.13  E-value=7.7e-10  Score=111.07  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|....      ..++.+...|+.....          
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~----------  328 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTY----------  328 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCC----------
Confidence            36789999999999999888875 779999999999999999887522      2467788888765411          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..++||+|++.+++++......+++.+.++|+|+|..+
T Consensus       329 -------------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~  366 (475)
T PLN02336        329 -------------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL  366 (475)
T ss_pred             -------------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEE
Confidence                         12479999999999999999999999999999988543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=1.7e-11  Score=96.43  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             EEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccccc
Q 019839          125 LELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERY  202 (335)
Q Consensus       125 LELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~  202 (335)
                      ||+|||+|.....++..  ..+|+++|+++.+++.+++++.......  ...+.+...+..+..                
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------   62 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN--FERLRFDVLDLFDYD----------------   62 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CC----------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc--eeEEEeecCChhhcc----------------
Confidence            79999999998888877  6899999999999988887777654210  012222222222210                


Q ss_pred             ccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          203 SWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       203 ~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                              ..++||+|+++.++++.+....+++.+.++|+|||
T Consensus        63 --------~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG   97 (99)
T PF08242_consen   63 --------PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGG   97 (99)
T ss_dssp             --------C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-
T ss_pred             --------cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCC
Confidence                    12489999999999999999999999999999988

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.12  E-value=9.8e-09  Score=90.35  Aligned_cols=96  Identities=15%  Similarity=0.045  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++.+  .+|++.|.++.+++.+++|+..++.     .++.+...+....           
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~~~-----------   93 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAPIE-----------   93 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCchhh-----------
Confidence            478899999999999999999874  6999999999999999999988763     3466655443211           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ...+||+|++....   .....+++.+.++|+++|..
T Consensus        94 --------------~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~l  127 (187)
T PRK08287         94 --------------LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRL  127 (187)
T ss_pred             --------------cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEE
Confidence                          12479999986543   34577889999999998853

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.11  E-value=5.8e-10  Score=102.59  Aligned_cols=96  Identities=11%  Similarity=-0.027  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..++..+.+|+++|+++.+++.++.+...          ..+...|+....            
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~~~------------   98 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIESLP------------   98 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCcccCc------------
Confidence            3568999999999999988888899999999999999998876421          122333333210            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ....+||+|+++.++++......++..+.++|+++|..
T Consensus        99 -----------~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l  136 (251)
T PRK10258         99 -----------LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVV  136 (251)
T ss_pred             -----------CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEE
Confidence                       01247999999999998888999999999999998843

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=9.9e-10  Score=102.42  Aligned_cols=110  Identities=18%  Similarity=0.336  Sum_probs=81.8

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ++.|++++  +....+ +|||||||.|.+|+.+|+..  .+|+++|.+..+++.+++|+..|...     +..+..-+-.
T Consensus       147 S~lLl~~l--~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~  218 (300)
T COG2813         147 SRLLLETL--PPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLY  218 (300)
T ss_pred             HHHHHHhC--CccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEeccc
Confidence            34444443  233445 99999999999999999995  69999999999999999999999842     2233332222


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +.                         ..++||+||+.-.++.-.     ....++..-.+.|++||...
T Consensus       219 ~~-------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         219 EP-------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             cc-------------------------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence            22                         123899999999998743     23479999999999998753

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.11  E-value=1.3e-09  Score=100.65  Aligned_cols=97  Identities=18%  Similarity=0.104  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||||||+|..+..+++.  +.+|+++|+++.+++.++.++.          ++.+...|-....         
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~---------   89 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ---------   89 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC---------
Confidence            346789999999999999888876  5799999999999999987631          2333333322110         


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ...+||+|+++.++++......+++.+.++|++||..+
T Consensus        90 ---------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~  127 (258)
T PRK01683         90 ---------------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLA  127 (258)
T ss_pred             ---------------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEE
Confidence                           12389999999999988888999999999999988543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.10  E-value=1.2e-09  Score=101.93  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .|-....+++++..   ..-+|.+|||||||-|-+++.+|+. |.+|++..++++..+.+++.+...+.    ..++.+.
T Consensus        45 ~AQ~~k~~~~~~~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~  117 (273)
T PF02353_consen   45 EAQERKLDLLCEKL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRVEVR  117 (273)
T ss_dssp             HHHHHHHHHHHTTT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEE
T ss_pred             HHHHHHHHHHHHHh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEE
Confidence            34555667777764   5678999999999999999999998 99999999999999999999987654    4678888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..||.+.                          ..+||-|++-+++.+.  ...+.+++.+.++|+|+|..+
T Consensus       118 ~~D~~~~--------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~  163 (273)
T PF02353_consen  118 LQDYRDL--------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLV  163 (273)
T ss_dssp             ES-GGG-----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEE
T ss_pred             Eeecccc--------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEE
Confidence            8888654                          1289999999999987  678999999999999998654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.10  E-value=1.1e-09  Score=99.43  Aligned_cols=110  Identities=11%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .+|+....   ...++++|||||||+|..++.+++.+.+|+++|.++.+++.++.|+..+.      ..+.+...++.+.
T Consensus        37 ~~~l~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~  107 (233)
T PRK05134         37 LNYIREHA---GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEEL  107 (233)
T ss_pred             HHHHHHhc---cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHh
Confidence            45666553   34678999999999999999999988999999999999999999987654      2345555554432


Q ss_pred             CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ..                      ...++||+|+++.++++......+++.+.++|+++|.
T Consensus       108 ~~----------------------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~  146 (233)
T PRK05134        108 AA----------------------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL  146 (233)
T ss_pred             hh----------------------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence            10                      1235899999999999998899999999999999874

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.10  E-value=1e-09  Score=102.21  Aligned_cols=103  Identities=19%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .-+|.+|||+|||+|..++.+++. +  .+|+++|.++.+++.+++|+..+..     .++.+...++.+...       
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~-------  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPV-------  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCC-------
Confidence            347899999999999988877765 4  4799999999999999999887652     456666666543210       


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      ..+.||+|++.-++++......+++.+.++|+|||..+
T Consensus       143 ----------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~  180 (272)
T PRK11873        143 ----------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFA  180 (272)
T ss_pred             ----------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEE
Confidence                            12479999999999888888899999999999998654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.10  E-value=1.1e-09  Score=99.26  Aligned_cols=101  Identities=16%  Similarity=0.049  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+|++|||+|||+|..+..+++.   +.+|++.|+++.+++.++.|+..+.     ..++.+...|..+...        
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~--------  110 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPF--------  110 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCC--------
Confidence            46889999999999999988875   3599999999999999999987655     2456666655443210        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ..++||+|+++.++.+.+....+++.+.++|+++|..
T Consensus       111 ---------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l  147 (231)
T TIGR02752       111 ---------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV  147 (231)
T ss_pred             ---------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence                           1248999999999988888889999999999998854

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.10  E-value=1e-09  Score=101.88  Aligned_cols=105  Identities=15%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++.+|||+|||+|..++.+++. +  .+|+++|++++|++.++++........  ..++.+...|..+..-        
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~--~~~i~~~~~d~~~lp~--------  141 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC--YKNIEWIEGDATDLPF--------  141 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc--CCCeEEEEcccccCCC--------
Confidence            46789999999999999888875 3  589999999999999987754211100  2456666666543210        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ..+.||+|+++.++++.+....+++.+.++|+|||..+
T Consensus       142 ---------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~  179 (261)
T PLN02233        142 ---------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVS  179 (261)
T ss_pred             ---------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEE
Confidence                           23479999999999999999999999999999998654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.09  E-value=4e-09  Score=85.52  Aligned_cols=100  Identities=13%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..++.     .++.+...+.....+        
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~--------   83 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPEALE--------   83 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccccccCh--------
Confidence            345789999999999999999887  46899999999999999999988752     345555554332110        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ....+||+|+....   ......+++.+.++|+++|..
T Consensus        84 --------------~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        84 --------------DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             --------------hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEE
Confidence                          01248999998643   234568999999999998854

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.09  E-value=9e-10  Score=99.41  Aligned_cols=99  Identities=15%  Similarity=0.066  Sum_probs=82.3

Q ss_pred             CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++|||+|||+|..++.+++.  +.+|+++|+++++++.++.++..++.    ..++.+...|.....             
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~-------------   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDP-------------   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCC-------------
Confidence            57999999999999888876  36899999999999999999877653    356777777764431             


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ..++||+|++..++++......+++.+.++|+|+|..+
T Consensus        64 -----------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  101 (224)
T smart00828       64 -----------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLV  101 (224)
T ss_pred             -----------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEE
Confidence                       12379999999999999889999999999999998654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.08  E-value=1.4e-09  Score=105.64  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..|.+++....   . ..+.+||||+||+|.+|+.+++.+++|+++|.++.+++.+++|+..|+.     .++.+...|
T Consensus       192 ~e~l~~~v~~~~---~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d  262 (362)
T PRK05031        192 NEKMLEWALDAT---K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMS  262 (362)
T ss_pred             HHHHHHHHHHHh---h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECC
Confidence            556666665542   1 1235799999999999999999889999999999999999999999973     467777776


Q ss_pred             CCC
Q 019839          182 WMN  184 (335)
Q Consensus       182 W~~  184 (335)
                      ..+
T Consensus       263 ~~~  265 (362)
T PRK05031        263 AEE  265 (362)
T ss_pred             HHH
Confidence            543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.07  E-value=1.6e-09  Score=104.35  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             CCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+|||||||+|.+++.+++.+  .+|+++|+++.+++.++.|++.|..      ...+...|....             
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~-------------  257 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD-------------  257 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc-------------
Confidence            3479999999999999999874  5899999999999999999999873      123333332211             


Q ss_pred             ccccccCcchhhccCCccEEEEeccccC-----cccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~-----~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..++||+|++.-.+++     ....+.+++.+.++|+++|...
T Consensus       258 ------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~  300 (342)
T PRK09489        258 ------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR  300 (342)
T ss_pred             ------------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence                        1247999999887765     2456889999999999998643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.07  E-value=1.5e-09  Score=105.00  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..|.+++.+..    ...+.+|||||||+|..|+.+++.+++|++.|.++.+++.+++|+..|+.     .++.+...|
T Consensus       183 ~~~l~~~v~~~~----~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d  253 (353)
T TIGR02143       183 NIKMLEWACEVT----QGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMS  253 (353)
T ss_pred             HHHHHHHHHHHh----hcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcC
Confidence            345555555432    12344799999999999999999988999999999999999999999973     457777766


Q ss_pred             CCC
Q 019839          182 WMN  184 (335)
Q Consensus       182 W~~  184 (335)
                      ..+
T Consensus       254 ~~~  256 (353)
T TIGR02143       254 AEE  256 (353)
T ss_pred             HHH
Confidence            544

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.06  E-value=4e-10  Score=90.96  Aligned_cols=102  Identities=16%  Similarity=0.053  Sum_probs=80.2

Q ss_pred             CCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          121 GIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      |.+|||+|||+|.+.+.+++.+ .+|++.|+++.+++.++.|+..+..    ..++.+...|+.+..+            
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~------------   64 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPE------------   64 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHH------------
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchh------------
Confidence            5689999999999999999998 9999999999999999999999864    3568888887655310            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccCCCcc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~~~~~  247 (335)
                               .....+||+|+++-.....        .....+++.+.++|+++|..
T Consensus        65 ---------~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~  111 (117)
T PF13659_consen   65 ---------PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL  111 (117)
T ss_dssp             ---------TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence                     0124689999997777643        24678899999999998744

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.05  E-value=1.7e-09  Score=99.92  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ...+.+|||||||+|..+..+++.  +.+|+++|+++.+++.++.+   |         +.+...|..+.          
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~---------~~~~~~d~~~~----------   84 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---G---------VDARTGDVRDW----------   84 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---C---------CcEEEcChhhC----------
Confidence            357789999999999999999887  67999999999999888642   1         23333332211          


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ...++||+|+++.++++......+++.+.++|+|||..+
T Consensus        85 --------------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~  123 (255)
T PRK14103         85 --------------KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIA  123 (255)
T ss_pred             --------------CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEE
Confidence                          012489999999999998889999999999999998543

>PRK08317 hypothetical protein; Provisional

Probab=99.05  E-value=3.7e-09  Score=95.36  Aligned_cols=103  Identities=15%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++.+|||+|||+|..+..++..   ..+|+++|.++.+++.++.+....      ..++.+...|......      
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~------   83 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPF------   83 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCC------
Confidence            4457889999999999999888876   368999999999999998883322      2456666666543210      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ..+.||+|++..++.+......+++.+.++|+++|..+
T Consensus        84 -----------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  121 (241)
T PRK08317         84 -----------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVV  121 (241)
T ss_pred             -----------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEE
Confidence                             12489999999999998899999999999999998654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.05  E-value=2.3e-09  Score=94.69  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=78.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..+++.++||||||.|.-++.+|+.|..|++.|.++..++.+++-++.++      -.+++...|..+..          
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~----------   90 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFD----------   90 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS----------
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhcc----------
Confidence            44678899999999999999999999999999999999999988777665      34777777765531          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ..+.||+|++.-|+++  .+..+.+++.++..+++||-.
T Consensus        91 --------------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~  129 (192)
T PF03848_consen   91 --------------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYN  129 (192)
T ss_dssp             ---------------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEE
T ss_pred             --------------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEE
Confidence                          1247999998766654  577889999999999998844

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.05  E-value=6.9e-09  Score=95.51  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+.+|||||||+|..++.+++.    +.+|+++|.++.|++.+++|+..+..    ..++.+...+..+.         
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~---------  121 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDI---------  121 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhC---------
Confidence            36789999999999998888763    57999999999999999999987653    24677776665432         


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                                      ....+|+|+++-++++.+  ....+++.+.+.|+|||..
T Consensus       122 ----------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l  160 (247)
T PRK15451        122 ----------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL  160 (247)
T ss_pred             ----------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence                            113589999988887643  3468999999999998843

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2.2e-09  Score=100.61  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      +..|.+.+....    ...+.+|||||||+|.+++.+|+.+.  +|++||+++++++.+++|+..|+.     .++.+..
T Consensus        96 Te~Lve~~l~~~----~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~  166 (280)
T COG2890          96 TELLVEAALALL----LQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-----VRVLVVQ  166 (280)
T ss_pred             hHHHHHHHHHhh----hhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEe
Confidence            556666654221    11112899999999999999999864  999999999999999999999984     3344444


Q ss_pred             ccCCCC
Q 019839          180 LNWMNP  185 (335)
Q Consensus       180 ldW~~~  185 (335)
                      .||.+.
T Consensus       167 ~dlf~~  172 (280)
T COG2890         167 SDLFEP  172 (280)
T ss_pred             eecccc
Confidence            488876

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.05  E-value=7.4e-10  Score=87.57  Aligned_cols=93  Identities=19%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             EEEEcCccCHHHHHHHHhC-----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          124 SLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       124 VLELG~GtGL~gl~la~~~-----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      |||||||+|.....+++..     .++++.|+++++++.++++.....      .++++...|..+.             
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l-------------   61 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDL-------------   61 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCH-------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHC-------------
Confidence            7999999999999988874     799999999999999999987633      3567777776542             


Q ss_pred             ccccccCcchhhccCCccEEEEecc-ccC--cccHHHHHHHHHHhccCCC
Q 019839          199 QERYSWNSSELKEVQRASVLLAADV-IYS--DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDv-iY~--~~~~~~L~~tl~~lL~~~~  245 (335)
                                ....++||+|+++.. +++  ++....+++.+.++++|+|
T Consensus        62 ----------~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   62 ----------PFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             ----------HHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ----------cccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                      113459999999655 444  4568889999999999865

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.04  E-value=1.2e-09  Score=96.09  Aligned_cols=96  Identities=18%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      +-.++||+|||.|.++..+|..+.+++++|+++.+++.+++.+..       .++|.+...+..+.++            
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P------------  103 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP------------  103 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---------------
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC------------
Confidence            345899999999999999999999999999999999999988753       3578888888766543            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~  246 (335)
                                  .++||+|+.|.|+|+-..   ...++..+...|+|+|.
T Consensus       104 ------------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~  141 (201)
T PF05401_consen  104 ------------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGH  141 (201)
T ss_dssp             ------------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             ------------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCE
Confidence                        358999999999999754   45677788888999884

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.04  E-value=8.9e-09  Score=92.21  Aligned_cols=93  Identities=16%  Similarity=0.253  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++.|..          .+.+...+..+..          
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~~~----------  101 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFDPF----------  101 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccCCC----------
Confidence            46779999999999999988876  5799999999999999987632          1233344433211          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ..++||+|++..++++.. .+.+.+.++++.+..++
T Consensus       102 --------------~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~  136 (204)
T TIGR03587       102 --------------KDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNR  136 (204)
T ss_pred             --------------CCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCc
Confidence                          234899999999998764 33444455555444333

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.03  E-value=3.7e-09  Score=95.28  Aligned_cols=95  Identities=19%  Similarity=0.206  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++++|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..+..    ..++.+...|+.+.            
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSL------------  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhC------------
Confidence            46789999999999999999999889999999999999999999877652    23566666665543            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMP  242 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~  242 (335)
                                    ..+||+|++++++++.+  ....+++.+.++++
T Consensus       117 --------------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~  149 (219)
T TIGR02021       117 --------------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTK  149 (219)
T ss_pred             --------------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC
Confidence                          14799999999987643  45566777777665

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.03  E-value=4e-09  Score=101.21  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+++.  +.+|+++|.++.+++.+++|...+        ++.+...|..+..           
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e~lp-----------  173 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAEDLP-----------  173 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHHhCC-----------
Confidence            5779999999999999888775  469999999999999998876422        3444554443321           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  -..+.||+|++++++++....+.+++.+.++|+++|..+
T Consensus       174 ------------~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv  212 (340)
T PLN02490        174 ------------FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC  212 (340)
T ss_pred             ------------CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence                        013479999999999988888899999999999998654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.02  E-value=5.9e-09  Score=94.31  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++.+|||+|||+|..++.++..+   .+|+++|.++.+++.+++|+..+..    ..++.+...|+.+...        
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~--------  117 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEALPF--------  117 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccCCC--------
Confidence            367899999999999999988875   7999999999999999999866432    2456777777655311        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ..+.||+|+++.++++......+++.+.++|+++|..
T Consensus       118 ---------------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  154 (239)
T PRK00216        118 ---------------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL  154 (239)
T ss_pred             ---------------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence                           1347999999999999999999999999999998854

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.02  E-value=6e-09  Score=93.86  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC---EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~---~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      .+..++.+..   ...++.+|||+|||+|..++.+++...   +|++.|+++.+++.+++|+..++     ..++.+...
T Consensus        64 ~~~~~~~~~l---~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~  135 (215)
T TIGR00080        64 HMVAMMTELL---ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVG  135 (215)
T ss_pred             HHHHHHHHHh---CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEEC
Confidence            3444444443   446789999999999999999998843   59999999999999999998876     346777777


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      |..+..+                       ...+||+|+......      .+.+.+.+.|+++|..+
T Consensus       136 d~~~~~~-----------------------~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv  174 (215)
T TIGR00080       136 DGTQGWE-----------------------PLAPYDRIYVTAAGP------KIPEALIDQLKEGGILV  174 (215)
T ss_pred             CcccCCc-----------------------ccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEE
Confidence            7654321                       124899999765432      23456788899988543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00740 methyltransferase, putative

Probab=99.01  E-value=6.3e-09  Score=95.11  Aligned_cols=100  Identities=12%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+.+|||||||+|..++.+++.    +.+|++.|+++.|++.+++++.....    ..++.+...|+.+..        
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~--------  119 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVE--------  119 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCC--------
Confidence            36789999999999999888874    56899999999999999999875432    245777777765531        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                                       ...+|+|+++.++++..  ....+++.+.+.|+++|..
T Consensus       120 -----------------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l  157 (239)
T TIGR00740       120 -----------------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL  157 (239)
T ss_pred             -----------------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence                             23589999999887753  4577999999999998843

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.99  E-value=4.9e-09  Score=93.49  Aligned_cols=110  Identities=17%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCccCHHHHHH-HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILL-SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~l-a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..+.+|||||||+|..|+.+ ++.+++|++.|.++.+++.+++|++.|+.     .++.+...|+.+..+          
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~~~~l~----------  116 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNALSFLA----------  116 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchHHHHHh----------
Confidence            46789999999999999964 55567999999999999999999999873     357777776544211          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHh--ccCCCcceeeceEEEEEEeeecc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL--MPLGSKKVLVNMVLYLALEKRYN  263 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~l--L~~~~~~~~~~p~i~ia~~~R~~  263 (335)
                                  .....||+|+..-. |.....+.+++.|...  +.+  ..+     +|+.+.++..
T Consensus       117 ------------~~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~--~~i-----v~ve~~~~~~  164 (199)
T PRK10909        117 ------------QPGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLAD--EAL-----IYVESEVENG  164 (199)
T ss_pred             ------------hcCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCC--CcE-----EEEEecCCCC
Confidence                        01236999986444 6667777777777663  444  336     8888766544

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=1.1e-08  Score=91.50  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..++.+..   ...++.+|||+|||+|..+..+++.   +.+|++.|+++.+++.+++|+..++.    ..++++...|
T Consensus        60 ~~~~~~~~l---~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d  132 (205)
T PRK13944         60 MVAMMCELI---EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGD  132 (205)
T ss_pred             HHHHHHHhc---CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECC
Confidence            344454443   3356789999999999999888876   36999999999999999999988763    2357777777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ..+..+                       ...+||+|++...+.+      +.+.+.+.|++||..
T Consensus       133 ~~~~~~-----------------------~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~l  169 (205)
T PRK13944        133 GKRGLE-----------------------KHAPFDAIIVTAAAST------IPSALVRQLKDGGVL  169 (205)
T ss_pred             cccCCc-----------------------cCCCccEEEEccCcch------hhHHHHHhcCcCcEE
Confidence            554321                       1248999998766543      335677889998854

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=3.7e-09  Score=92.00  Aligned_cols=63  Identities=25%  Similarity=0.266  Sum_probs=55.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..+.|++|+|||||||.+|+.++.+| ++|++.|+++++++.++.|+..+      .+++.+...|-.+.
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~  105 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF  105 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc
Confidence            67899999999999999999999997 68999999999999999999884      36677777665543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.96  E-value=7e-09  Score=93.67  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++++|||||||+|..+..+++.+  .+|+++|.++.+++.++.+..         .++.+...|..+...         
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~---------   94 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPL---------   94 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCC---------
Confidence            556899999999999999998875  468999999999888876543         134455555443210         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ..++||+|+++.++++......++..+.++|+++|..
T Consensus        95 --------------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l  131 (240)
T TIGR02072        95 --------------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLL  131 (240)
T ss_pred             --------------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEE
Confidence                          1247999999999999988999999999999998843

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.96  E-value=7e-09  Score=93.45  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhcCC-CCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          102 ELVLADFVMHKMCT-SSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       102 a~~La~~l~~~~~~-~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      ......|+.+.... ....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++.|+..+..     .++.+...
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~  100 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-----LKIEYRCT  100 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeC
Confidence            33445666654311 1235688999999999999999988888999999999999999999887652     23555555


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ++.+...                      ....+||+|+++.++++......+++.+.++|+++|.
T Consensus       101 d~~~~~~----------------------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~  144 (224)
T TIGR01983       101 SVEDLAE----------------------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGI  144 (224)
T ss_pred             CHHHhhc----------------------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcE
Confidence            4433211                      0124899999999999999999999999999999874

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.96  E-value=1.1e-08  Score=91.02  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|++.|.++.+++.+++|+..|+.    ..++.+...|..+..+      
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~d~~~~l~------  106 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKGEAPEILF------  106 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEechhhhHh------
Confidence            4568899999999999999999875   36899999999999999999998863    2356666555433210      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      ...+.||.|+..-   .......+++.+.++|+++|..+
T Consensus       107 ----------------~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv  142 (198)
T PRK00377        107 ----------------TINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIV  142 (198)
T ss_pred             ----------------hcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEE
Confidence                            0124799999732   23456778999999999988543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.96  E-value=1.2e-08  Score=95.87  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..|+.    ..++.+...|+.+..+          
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~~----------  186 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAALP----------  186 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccC----------
Confidence            3578999999999999999987  46999999999999999999998874    2468888888754311          


Q ss_pred             cccccccCcchhhccCCccEEEEecc--------------ccCc-----------ccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADV--------------IYSD-----------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDv--------------iY~~-----------~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ..+||+|++.-.              .|.+           .....+++.+.++|+++|.
T Consensus       187 --------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~  246 (284)
T TIGR03533       187 --------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV  246 (284)
T ss_pred             --------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence                          136999998522              1221           1246778888999999884

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.95  E-value=9.1e-09  Score=92.99  Aligned_cols=94  Identities=18%  Similarity=0.257  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++...+..    ..++.+...|+...            
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------  124 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLESL------------  124 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCchhc------------
Confidence            35678999999999999999999888999999999999999999876542    13566666663221            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLM  241 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL  241 (335)
                                    .+.||+|++.+++++.  +....+++.+.+++
T Consensus       125 --------------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~  156 (230)
T PRK07580        125 --------------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLT  156 (230)
T ss_pred             --------------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence                          2479999999999663  34455666666654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.95  E-value=1.5e-08  Score=91.19  Aligned_cols=110  Identities=13%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      +-.+..++.+..   ...+|.+|||+|||+|..+..+++..   .+|++.|+++++++.+++|++.++     ..++.+.
T Consensus        61 ~p~~~~~~~~~l---~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~  132 (212)
T PRK13942         61 AIHMVAIMCELL---DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVI  132 (212)
T ss_pred             cHHHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEE
Confidence            334444555443   44678999999999999998888773   599999999999999999998776     3467777


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|-...++                       ...+||+|++.-.+.      .+...+.+.|++||..+
T Consensus       133 ~gd~~~~~~-----------------------~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lv  173 (212)
T PRK13942        133 VGDGTLGYE-----------------------ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMV  173 (212)
T ss_pred             ECCcccCCC-----------------------cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEE
Confidence            766443321                       124899998865442      23346677899998644

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=8.6e-09  Score=101.92  Aligned_cols=153  Identities=17%  Similarity=0.188  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..|.++..+..   ....+.+||||=||.|..||.+|+..++|+++++++++++.+++|++.|+.     .++.+...+
T Consensus       278 ~ekl~~~a~~~~---~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~  349 (432)
T COG2265         278 AEKLYETALEWL---ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGD  349 (432)
T ss_pred             HHHHHHHHHHHH---hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence            556666666653   345678999999999999999999999999999999999999999999994     557777766


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeee
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKR  261 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R  261 (335)
                      -.+..+.               |     .....+|+||.     |++-...--..++.+.+-++..+     +|++|.  
T Consensus       350 ae~~~~~---------------~-----~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~p~~I-----vYVSCN--  397 (432)
T COG2265         350 AEEFTPA---------------W-----WEGYKPDVVVV-----DPPRAGADREVLKQLAKLKPKRI-----VYVSCN--  397 (432)
T ss_pred             HHHHhhh---------------c-----cccCCCCEEEE-----CCCCCCCCHHHHHHHHhcCCCcE-----EEEeCC--
Confidence            4433111               1     02347899988     77654433345555555556778     999982  


Q ss_pred             ccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccC
Q 019839          262 YNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYD  318 (335)
Q Consensus       262 ~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~ye  318 (335)
                             ..+.+..    ...|..            .++.++++.+.| ||+.- |+|
T Consensus       398 -------P~TlaRD----l~~L~~------------~gy~i~~v~~~DmFP~T~-HvE  431 (432)
T COG2265         398 -------PATLARD----LAILAS------------TGYEIERVQPFDMFPHTH-HVE  431 (432)
T ss_pred             -------HHHHHHH----HHHHHh------------CCeEEEEEEEeccCCCcc-ccC
Confidence                   2222222    222221            467777775555 99976 554

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.94  E-value=7.2e-09  Score=94.49  Aligned_cols=117  Identities=15%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ  172 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~  172 (335)
                      -.+.|+.++...-.         ..+|.+|||+|||||-.++.+++..  .+|++.|+++.||+.++..+..-+.     
T Consensus        35 ~~~~Wr~~~i~~~~---------~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----  100 (238)
T COG2226          35 LHRLWRRALISLLG---------IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----  100 (238)
T ss_pred             chHHHHHHHHHhhC---------CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----
Confidence            46889976543321         2289999999999999999999985  7999999999999999988764221     


Q ss_pred             CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..+.....|-.+-+                       -.+..||+|.++-.+.+..+.+..++.+.|.|+|+|+.+
T Consensus       101 ~~i~fv~~dAe~LP-----------------------f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~  153 (238)
T COG2226         101 QNVEFVVGDAENLP-----------------------FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL  153 (238)
T ss_pred             cceEEEEechhhCC-----------------------CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence            22555555543321                       124589999999999999999999999999999998543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.94  E-value=2.9e-08  Score=89.13  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +.|..... ..++.+..   ...++.+|||+|||+|..+..+++.+.+|++.|+++.+++.+++|+..++     ..++.
T Consensus        59 ~~~~~p~~-~~~l~~~l---~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~-----~~~v~  129 (212)
T PRK00312         59 QTISQPYM-VARMTELL---ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG-----LHNVS  129 (212)
T ss_pred             CeeCcHHH-HHHHHHhc---CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC-----CCceE
Confidence            33444443 34444432   34578899999999999999888887799999999999999999998875     24577


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +...|..+..+                       ..++||+|+..-.+.      .+.+.+.++|+++|..+
T Consensus       130 ~~~~d~~~~~~-----------------------~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv  172 (212)
T PRK00312        130 VRHGDGWKGWP-----------------------AYAPFDRILVTAAAP------EIPRALLEQLKEGGILV  172 (212)
T ss_pred             EEECCcccCCC-----------------------cCCCcCEEEEccCch------hhhHHHHHhcCCCcEEE
Confidence            77776543321                       124799999865432      33466788999988543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.92  E-value=2e-08  Score=98.32  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .+..|.+.+....     .++.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|++.|+      .++.+.
T Consensus       237 eTE~LVe~aL~~l-----~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi  305 (423)
T PRK14966        237 ETEHLVEAVLARL-----PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG------ARVEFA  305 (423)
T ss_pred             cHHHHHHHhhhcc-----CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEE
Confidence            3557777776543     24579999999999999998875  5799999999999999999998875      367888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc-------------------------ccHHHH
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-------------------------DLTDAL  233 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-------------------------~~~~~L  233 (335)
                      ..||.+...+                      ..++||+|++.-.....                         +....+
T Consensus       306 ~gDl~e~~l~----------------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~I  363 (423)
T PRK14966        306 HGSWFDTDMP----------------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTL  363 (423)
T ss_pred             Ecchhccccc----------------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHH
Confidence            8888653110                      12369999985532111                         124467


Q ss_pred             HHHHHHhccCCCcc
Q 019839          234 FHTLKRLMPLGSKK  247 (335)
Q Consensus       234 ~~tl~~lL~~~~~~  247 (335)
                      ++.+.++|+++|..
T Consensus       364 i~~a~~~LkpgG~l  377 (423)
T PRK14966        364 AQGAPDRLAEGGFL  377 (423)
T ss_pred             HHHHHHhcCCCcEE
Confidence            77778899998743

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.92  E-value=1.4e-08  Score=99.29  Aligned_cols=98  Identities=10%  Similarity=0.057  Sum_probs=78.1

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ...+|.+|||+|||+|..++.+++. +.+|+++|+++++++.+++++.  .      ..+.+...|+.+.          
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~------l~v~~~~~D~~~l----------  225 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G------LPVEIRLQDYRDL----------  225 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c------CeEEEEECchhhc----------
Confidence            3457889999999999999988875 7899999999999999998873  1      2355555554331          


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      .++||+|++..++++.  ...+.+++.+.++|+|+|..+
T Consensus       226 ----------------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lv  264 (383)
T PRK11705        226 ----------------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFL  264 (383)
T ss_pred             ----------------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEE
Confidence                            2479999999999885  346789999999999988654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.91  E-value=2.5e-08  Score=94.76  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      .+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|++.|+.    ..++.+...|+.+..+            
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l~------------  198 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAALP------------  198 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhCC------------
Confidence            68999999999999999987  46999999999999999999998863    2468888888754321            


Q ss_pred             cccccCcchhhccCCccEEEEec--------------cccCc-----------ccHHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAAD--------------VIYSD-----------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasD--------------viY~~-----------~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ..+||+|++.-              +.|.+           +....+++.+.++|++||.
T Consensus       199 ------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~  258 (307)
T PRK11805        199 ------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGV  258 (307)
T ss_pred             ------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence                        13699999852              22222           2246788899999999884

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.91  E-value=2.3e-08  Score=94.01  Aligned_cols=97  Identities=16%  Similarity=0.242  Sum_probs=75.3

Q ss_pred             CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      .+|||+|||+|..++.+++..  .+|+++|+++.+++.+++|+..|+.    ..++.+...||.+..+            
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~~~~------------  179 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFEPLA------------  179 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhccCc------------
Confidence            689999999999999999874  6999999999999999999998873    2458888888876421            


Q ss_pred             cccccCcchhhccCCccEEEEec-------------cc-cCc-----------ccHHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAAD-------------VI-YSD-----------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasD-------------vi-Y~~-----------~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ..+||+|++..             ++ |.+           .....+++...++|+++|.
T Consensus       180 ------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~  239 (284)
T TIGR00536       180 ------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF  239 (284)
T ss_pred             ------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                        12689998841             22 222           1456788888899999873

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.90  E-value=8e-09  Score=92.31  Aligned_cols=101  Identities=9%  Similarity=-0.020  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC-CCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW-MNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW-~~~~~~~~~~~~~~  196 (335)
                      .+.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..+.     ..++.+...|+ ... +.        
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l-~~--------  105 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVL-LD--------  105 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHH-HH--------
Confidence            5679999999999999988876  4689999999999999999998876     34577777776 321 00        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ....+.||+|++.-.....        .....+++.+.++|+++|.
T Consensus       106 ------------~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~  151 (202)
T PRK00121        106 ------------MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGE  151 (202)
T ss_pred             ------------HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence                        0123479999985332111        1257789999999999873

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.90  E-value=3e-08  Score=90.70  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=85.9

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      -++.+..+.+.+.+..    .-.+++|||+|||+|..++.+++.  ..+|+++|+++.+++.++.|+..++.     .++
T Consensus        69 p~~~~~~l~~~~l~~~----~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~  139 (251)
T TIGR03534        69 PRPDTEELVEAALERL----KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNV  139 (251)
T ss_pred             CCCChHHHHHHHHHhc----ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeE
Confidence            3456667777776653    124569999999999999999987  56999999999999999999988763     467


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------------------cc
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DL  229 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------------------~~  229 (335)
                      .+...|+.+..                        ..++||+|++.-..+..                          ..
T Consensus       140 ~~~~~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  195 (251)
T TIGR03534       140 TFLQSDWFEPL------------------------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF  195 (251)
T ss_pred             EEEECchhccC------------------------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence            88887776532                        12479999985433211                          11


Q ss_pred             HHHHHHHHHHhccCCCc
Q 019839          230 TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       230 ~~~L~~tl~~lL~~~~~  246 (335)
                      ...+++.+.++|+++|.
T Consensus       196 ~~~~i~~~~~~L~~gG~  212 (251)
T TIGR03534       196 YRRIIAQAPRLLKPGGW  212 (251)
T ss_pred             HHHHHHHHHHhcccCCE
Confidence            24678889999999874

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.90  E-value=2.8e-08  Score=97.55  Aligned_cols=105  Identities=13%  Similarity=0.009  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||||||+|..++.++..+ .+|++.|.++.+++.+++|+.+|+..   ..++.+...|..+....         
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~---------  286 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRT---------  286 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHH---------
Confidence            478999999999999999887765 49999999999999999999999742   13577777765442100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc---------cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD---------LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------~~~~L~~tl~~lL~~~~  245 (335)
                                .....++||+|++--..|...         ....++....++|+++|
T Consensus       287 ----------~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG  333 (396)
T PRK15128        287 ----------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGG  333 (396)
T ss_pred             ----------HHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence                      001134799999643333222         24455666788999887

>PRK05785 hypothetical protein; Provisional

Probab=98.89  E-value=7.7e-09  Score=94.06  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .+.+|||||||||..+..+++. +.+|+++|.+++|++.++.+.   .          ....+..+. +           
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~----------~~~~d~~~l-p-----------  105 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D----------KVVGSFEAL-P-----------  105 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c----------eEEechhhC-C-----------
Confidence            3679999999999999999888 689999999999999886531   0          111222111 0           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccC
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL  243 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~  243 (335)
                                 -..++||+|+++.++++.+..+.+++.+.++|++
T Consensus       106 -----------~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785        106 -----------FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             -----------CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence                       0234899999999999999999999999999997

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.89  E-value=2.8e-08  Score=91.85  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .+..|.+.+....  .....+.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..|+        +.+.
T Consensus        69 ~Te~Lv~~~l~~~--~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~  138 (251)
T TIGR03704        69 RTEFLVDEAAALA--RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------GTVH  138 (251)
T ss_pred             cHHHHHHHHHHhh--cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CEEE
Confidence            4566777665532  11123458999999999999999876  4699999999999999999998875        2455


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------------------ccHHH
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DLTDA  232 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------------------~~~~~  232 (335)
                      ..||.+..+..                     ..++||+|++.-.....                          +....
T Consensus       139 ~~D~~~~l~~~---------------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~  197 (251)
T TIGR03704       139 EGDLYDALPTA---------------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR  197 (251)
T ss_pred             Eeechhhcchh---------------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence            56665431100                     12479999875433211                          01347


Q ss_pred             HHHHHHHhccCCCc
Q 019839          233 LFHTLKRLMPLGSK  246 (335)
Q Consensus       233 L~~tl~~lL~~~~~  246 (335)
                      +++...++|+++|.
T Consensus       198 i~~~a~~~L~~gG~  211 (251)
T TIGR03704       198 VAAGAPDWLAPGGH  211 (251)
T ss_pred             HHHHHHHhcCCCCE
Confidence            78888899999874

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.89  E-value=3e-08  Score=94.06  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -++.+|||+|||+|..++.+++..  .+|++.|. +.+++.+++|+...+.    ..++++...|..+..          
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~----------  212 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKES----------  212 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCC----------
Confidence            456899999999999999999883  68999998 6899999999987764    357888888866431          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcceeec
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLVN  251 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~~~~  251 (335)
                                     ...+|+|+.+-++|+..  ....+++.+.+.|+|||+.++.+
T Consensus       213 ---------------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       213 ---------------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             ---------------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                           12469999999998653  44679999999999998765433

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.87  E-value=8.8e-09  Score=97.41  Aligned_cols=115  Identities=18%  Similarity=0.251  Sum_probs=87.3

Q ss_pred             CCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...|+||+|||+|||||++|+.+|+.| ++|++.|.+ .+.+.++..+..|+..    ..+++....-.+-.        
T Consensus        56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~----~ii~vi~gkvEdi~--------  122 (346)
T KOG1499|consen   56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE----DVITVIKGKVEDIE--------  122 (346)
T ss_pred             hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc----ceEEEeecceEEEe--------
Confidence            467999999999999999999999997 589999998 7779999999999863    44555554422210        


Q ss_pred             CCccccccccCcchhhccCCccEEEE---eccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLA---ADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIla---sDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                    ++ .++.|+|++   .-+++.....+..+-.=.+.|+++|-......++|++-
T Consensus       123 --------------LP-~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~  174 (346)
T KOG1499|consen  123 --------------LP-VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAA  174 (346)
T ss_pred             --------------cC-ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEe
Confidence                          11 358999997   56677778888888888999999885543344455543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=3.2e-08  Score=92.38  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|++|||+|||.|.-+.-++..|+ .|+++|.++..+  ++..+...-.    .....+..+.-+-..         
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~l----g~~~~~~~lplgvE~---------  176 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFL----GQDPPVFELPLGVED---------  176 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHh----CCCccEEEcCcchhh---------
Confidence            468999999999999999999999975 799999876333  3322221111    011222333222110         


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   +...+.||+|++.-|+||....-..++.++..|++||..+
T Consensus       177 -------------Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv  216 (315)
T PF08003_consen  177 -------------LPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV  216 (315)
T ss_pred             -------------ccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence                         1124589999999999999999999999999999998765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK04266 fibrillarin; Provisional

Probab=98.86  E-value=9.6e-08  Score=86.87  Aligned_cols=121  Identities=14%  Similarity=0.163  Sum_probs=78.3

Q ss_pred             ccceeehh------HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHc
Q 019839           94 VGLQVWKA------ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus        94 ~G~~vW~a------a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      .+.++|..      +.+|+.+  ...   ...+|.+|||+|||+|..++.+++..  .+|++.|.++.|++.+.+++...
T Consensus        45 ~~~~~~~~~r~~~~~~ll~~~--~~l---~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~  119 (226)
T PRK04266         45 VEYREWNPRRSKLAAAILKGL--KNF---PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER  119 (226)
T ss_pred             cEEEEECCCccchHHHHHhhH--hhC---CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc
Confidence            34555554      5555555  121   44678899999999999999999873  58999999999999888776542


Q ss_pred             cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                             .++.+...|-......                    ......||+|+. |+- ++.....+++.+.++|+|||
T Consensus       120 -------~nv~~i~~D~~~~~~~--------------------~~l~~~~D~i~~-d~~-~p~~~~~~L~~~~r~LKpGG  170 (226)
T PRK04266        120 -------KNIIPILADARKPERY--------------------AHVVEKVDVIYQ-DVA-QPNQAEIAIDNAEFFLKDGG  170 (226)
T ss_pred             -------CCcEEEECCCCCcchh--------------------hhccccCCEEEE-CCC-ChhHHHHHHHHHHHhcCCCc
Confidence                   2344444443221000                    011246999984 221 22233456899999999998


Q ss_pred             cce
Q 019839          246 KKV  248 (335)
Q Consensus       246 ~~~  248 (335)
                      ..+
T Consensus       171 ~lv  173 (226)
T PRK04266        171 YLL  173 (226)
T ss_pred             EEE
Confidence            654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.86  E-value=4e-08  Score=103.18  Aligned_cols=102  Identities=19%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||||||+|..|+.+++.|+ +|+++|+++.+++.+++|++.|+..   ..++++...|..+...          
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~----------  603 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLK----------  603 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHH----------
Confidence            4789999999999999999999865 7999999999999999999999742   1357777766433210          


Q ss_pred             cccccccCcchhhccCCccEEEEecccc-----------CcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIY-----------SDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY-----------~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  ....+||+|++----+           .......++..+.++|+++|
T Consensus       604 ------------~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG  650 (702)
T PRK11783        604 ------------EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG  650 (702)
T ss_pred             ------------HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC
Confidence                        0124799999842222           12345678888899999987

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.85  E-value=6e-08  Score=86.74  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++.+|||+|||+|..+..+++..   .+++++|.++.+++.++.|..  .     ..++.+...|..+...        
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~~~~--------  102 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEALPF--------  102 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhcCCC--------
Confidence            378899999999999998888774   389999999999999998875  1     2456666665544210        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ..++||+|+++.++.+......+++.+.++|+++|..
T Consensus       103 ---------------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l  139 (223)
T TIGR01934       103 ---------------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRL  139 (223)
T ss_pred             ---------------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEE
Confidence                           1247999999999999889999999999999998854

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=4.5e-10  Score=103.51  Aligned_cols=175  Identities=23%  Similarity=0.181  Sum_probs=112.8

Q ss_pred             ecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839           84 QHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus        84 ~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      .|........+|..+|++++.|++++.++.   ....+++|.++|||+++..+.+++..-.|...|-...+.-++..|..
T Consensus        57 ~~~~~~~~~~tg~~~w~~al~L~~~l~~~~---d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~  133 (262)
T KOG2497|consen   57 SHSLRFLLARTGLSVWESALSLEADLRDKP---DLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIIL  133 (262)
T ss_pred             chHHHHHHHHhccccchHHHHHHHHHhhCc---ccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHh
Confidence            344446667899999999999999999983   55889999999999999998888887656555555444444444444


Q ss_pred             HccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccC
Q 019839          164 LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL  243 (335)
Q Consensus       164 ~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~  243 (335)
                      .|..... ...-+.-.++|.....              ..|.     ....+|+|+++||+|+ ....+++.++..+|..
T Consensus       134 ~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~-----~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~  192 (262)
T KOG2497|consen  134 LSRDLSL-EVRDSAPELNQAFLES--------------KPET-----SQEFTDLLGGADVIYD-TELRHLLETLMTLLLR  192 (262)
T ss_pred             ccccccc-cccccchhHHHHHHhc--------------Cccc-----ccchhhheeccCeeeh-hhhhHHHHHHHHHHHh
Confidence            4332111 2222233333332211              1111     1124999999999999 8888888888887765


Q ss_pred             CCcceeeceEEEEEEeeeccccccchhhhhhhhhHHHHHH
Q 019839          244 GSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYI  283 (335)
Q Consensus       244 ~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l  283 (335)
                      ..+.. -.-...++.+.+..|+..+....+..|..|...-
T Consensus       193 ~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n  231 (262)
T KOG2497|consen  193 WRGTG-LLTLLTIALESIVVFTSVDTKSLLSVYENFRLNN  231 (262)
T ss_pred             ccccc-hhhhhhhcccceEEEeehhhhhhhhhhhhhhhhc
Confidence            43321 0011455556666776666677777777776644

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.83  E-value=2.2e-08  Score=96.89  Aligned_cols=161  Identities=13%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      .+..|.+++....   ...++ +||||-||+|..|+.+|+.+++|+++|..+.+++.++.|+..|+.     .++++...
T Consensus       181 ~~~~l~~~~~~~l---~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~  251 (352)
T PF05958_consen  181 QNEKLYEQALEWL---DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRG  251 (352)
T ss_dssp             HHHHHHHHHHHHC---TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-
T ss_pred             HHHHHHHHHHHHh---hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEe
Confidence            3556667766653   22233 899999999999999999999999999999999999999999983     56777655


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                      +-.+.......       ...+.--.........+|+||.     |++-   .+.+++.+.+   .  +.+     +|+|
T Consensus       252 ~~~~~~~~~~~-------~r~~~~~~~~~~~~~~~d~vil-----DPPR~G~~~~~~~~~~~---~--~~i-----vYvS  309 (352)
T PF05958_consen  252 DAEDFAKALAK-------AREFNRLKGIDLKSFKFDAVIL-----DPPRAGLDEKVIELIKK---L--KRI-----VYVS  309 (352)
T ss_dssp             -SHHCCCHHCC-------S-GGTTGGGS-GGCTTESEEEE--------TT-SCHHHHHHHHH---S--SEE-----EEEE
T ss_pred             eccchhHHHHh-------hHHHHhhhhhhhhhcCCCEEEE-----cCCCCCchHHHHHHHhc---C--CeE-----EEEE
Confidence            42221100000       0000000000001236898876     7654   3344444433   2  457     9999


Q ss_pred             EeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839          258 LEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR  319 (335)
Q Consensus       258 ~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer  319 (335)
                      |         ++...+.....+    .             .||.++++.+.| |||.. |.|.
T Consensus       310 C---------nP~tlaRDl~~L----~-------------~~y~~~~v~~~DmFP~T~-HvE~  345 (352)
T PF05958_consen  310 C---------NPATLARDLKIL----K-------------EGYKLEKVQPVDMFPQTH-HVET  345 (352)
T ss_dssp             S----------HHHHHHHHHHH----H-------------CCEEEEEEEEE-SSTTSS---EE
T ss_pred             C---------CHHHHHHHHHHH----h-------------hcCEEEEEEEeecCCCCC-cEEE
Confidence            8         333333333222    1             268888875555 99988 6654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.83  E-value=1.8e-09  Score=96.29  Aligned_cols=139  Identities=22%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec-
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL-  180 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l-  180 (335)
                      ...|++.|...-    .-.-+++|||||||||.|..+-.++.+.++.|++..|++.+...=..        ..+.+.++ 
T Consensus       111 P~~l~emI~~~~----~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y--------D~L~~Aea~  178 (287)
T COG4976         111 PELLAEMIGKAD----LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY--------DTLYVAEAV  178 (287)
T ss_pred             HHHHHHHHHhcc----CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch--------HHHHHHHHH
Confidence            455666664431    11247999999999999999999999999999999999877543111        11111111 


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK  260 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~  260 (335)
                      .+...                        ...++||+|.|+||+-+-...+.++-....+|+++|-       +-++.|.
T Consensus       179 ~Fl~~------------------------~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGl-------faFSvE~  227 (287)
T COG4976         179 LFLED------------------------LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGL-------FAFSVET  227 (287)
T ss_pred             HHhhh------------------------ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCce-------EEEEecc
Confidence            12221                        1345899999999999999999999999999999883       3344433


Q ss_pred             ecc---ccccchhhhhhhhhHHHHHHhhhh
Q 019839          261 RYN---FSLNDLDVVANGYSHFRSYIMEEG  287 (335)
Q Consensus       261 R~~---ft~~~~d~v~~~~~~f~~~l~~~~  287 (335)
                      -..   |.+    .-+.-|.|-++|+++..
T Consensus       228 l~~~~~f~l----~ps~RyAH~~~YVr~~l  253 (287)
T COG4976         228 LPDDGGFVL----GPSQRYAHSESYVRALL  253 (287)
T ss_pred             cCCCCCeec----chhhhhccchHHHHHHH
Confidence            211   111    11334667677776543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.82  E-value=7.5e-08  Score=89.48  Aligned_cols=114  Identities=17%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .+..|.+++....   ...++.+|||+|||+|..++.++...  .+|+++|+++.+++.++.|+..+.     ..++.+.
T Consensus        92 ~te~l~~~~~~~~---~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~-----~~~i~~~  163 (275)
T PRK09328         92 ETEELVEWALEAL---LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL-----GARVEFL  163 (275)
T ss_pred             CcHHHHHHHHHhc---cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC-----CCcEEEE
Confidence            3456666666432   33567899999999999999999884  799999999999999999998222     3568888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---------------c-----------ccHHH
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------D-----------DLTDA  232 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------------~-----------~~~~~  232 (335)
                      ..||.+...                        .++||+|++.-....               +           .....
T Consensus       164 ~~d~~~~~~------------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~  219 (275)
T PRK09328        164 QGDWFEPLP------------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRR  219 (275)
T ss_pred             EccccCcCC------------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHH
Confidence            888755311                        247999988432211               1           12466


Q ss_pred             HHHHHHHhccCCCc
Q 019839          233 LFHTLKRLMPLGSK  246 (335)
Q Consensus       233 L~~tl~~lL~~~~~  246 (335)
                      +++.+.++|+++|.
T Consensus       220 ~~~~~~~~Lk~gG~  233 (275)
T PRK09328        220 IIEQAPRYLKPGGW  233 (275)
T ss_pred             HHHHHHHhcccCCE
Confidence            77888899999874

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.81  E-value=5.7e-08  Score=74.44  Aligned_cols=97  Identities=19%  Similarity=0.158  Sum_probs=77.3

Q ss_pred             eEEEEcCccCHHHHHHHH-hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839          123 ISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER  201 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~  201 (335)
                      +|+|+|||+|..+..+++ .+.+++++|.++.+++.++++...+.     ..++.+...++.+...              
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------------   61 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPP--------------   61 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhcc--------------
Confidence            589999999999988887 46799999999999988886544433     3567777777665421              


Q ss_pred             cccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCCc
Q 019839          202 YSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       202 ~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~~  246 (335)
                              ....++|+|++..+++. ......+++.+.++++++|.
T Consensus        62 --------~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~   99 (107)
T cd02440          62 --------EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGV   99 (107)
T ss_pred             --------ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCE
Confidence                    02357999999999998 88999999999999998773

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.81  E-value=8.5e-08  Score=86.46  Aligned_cols=121  Identities=11%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCC-------CCCCC
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGV-------FSHQG  173 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~-------~~~~~  173 (335)
                      ..-.|.+++...    ..-++.+||++|||.|.-++.+|..|.+|+++|+++.+++.+..........       .....
T Consensus        19 p~~~l~~~~~~l----~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~   94 (213)
T TIGR03840        19 VNPLLVKHWPAL----GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAG   94 (213)
T ss_pred             CCHHHHHHHHhh----CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecC
Confidence            345666776542    1136779999999999999999999999999999999998753211110000       00023


Q ss_pred             eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcc
Q 019839          174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ++++...|..+....                      ..+.||.|+..-++.+  ++.....++.+.++|+|+|..
T Consensus        95 ~v~~~~~D~~~~~~~----------------------~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~  148 (213)
T TIGR03840        95 NIEIFCGDFFALTAA----------------------DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQ  148 (213)
T ss_pred             ceEEEEccCCCCCcc----------------------cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence            466666666553210                      1247999998776654  345577899999999998753

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.80  E-value=9.9e-08  Score=84.63  Aligned_cols=99  Identities=11%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.+++|++.++.     .++++...|..+....        
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~--------  105 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEGSAPECLAQ--------  105 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEECchHHHHhh--------
Confidence            46789999999999999998876  47999999999999999999988763     3566665554321100        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ....+|.|+..    .......+++.+.++|+++|..+
T Consensus       106 --------------~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li  139 (196)
T PRK07402        106 --------------LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLV  139 (196)
T ss_pred             --------------CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEE
Confidence                          01234554431    12345788999999999988543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.78  E-value=4.4e-07  Score=79.26  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..-+|.+++|+|||||-+++-+|+.+  .+|++.|.++++++.+++|.+..+     ..++.+.+.+=-+..        
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L--------   97 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL--------   97 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh--------
Confidence            45688999999999999999999664  699999999999999999999987     467888777533321        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     .....||.|+-.-    -...+.+++++...|+++|+.+
T Consensus        98 ---------------~~~~~~daiFIGG----g~~i~~ile~~~~~l~~ggrlV  132 (187)
T COG2242          98 ---------------PDLPSPDAIFIGG----GGNIEEILEAAWERLKPGGRLV  132 (187)
T ss_pred             ---------------cCCCCCCEEEECC----CCCHHHHHHHHHHHcCcCCeEE
Confidence                           1223688887653    3677889999999999998654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.1e-07  Score=84.54  Aligned_cols=116  Identities=19%  Similarity=0.209  Sum_probs=85.0

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS  174 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~  174 (335)
                      +.|.=.+....|..+..-    ..-+|.+|||+|||+|..+-++|+.+.+|+..|+.+.+.+.+++|++..+     ..+
T Consensus        51 ~gqtis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg-----~~n  121 (209)
T COG2518          51 CGQTISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG-----YEN  121 (209)
T ss_pred             CCceecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC-----CCc
Confidence            333333444555554332    55788999999999999999999998899999999999999999999877     456


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +.++..|=...++                       ...+||.|+..-..=      .+-+.+.+-|++||+.+
T Consensus       122 V~v~~gDG~~G~~-----------------------~~aPyD~I~Vtaaa~------~vP~~Ll~QL~~gGrlv  166 (209)
T COG2518         122 VTVRHGDGSKGWP-----------------------EEAPYDRIIVTAAAP------EVPEALLDQLKPGGRLV  166 (209)
T ss_pred             eEEEECCcccCCC-----------------------CCCCcCEEEEeeccC------CCCHHHHHhcccCCEEE
Confidence            8888887555543                       235899998743322      23344556788888765

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=4.3e-08  Score=81.58  Aligned_cols=67  Identities=18%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+++||..+.   ...++++|||+|||.|. ++..+++.|..|+++|+++..++.++.+.            +.+..-|+
T Consensus         3 ~i~~~l~~~~---~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~------------~~~v~dDl   67 (134)
T PRK04148          3 TIAEFIAENY---EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG------------LNAFVDDL   67 (134)
T ss_pred             HHHHHHHHhc---ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC------------CeEEECcC
Confidence            4788888775   34577899999999996 99999999999999999999887776542            46677777


Q ss_pred             CCC
Q 019839          183 MNP  185 (335)
Q Consensus       183 ~~~  185 (335)
                      .+.
T Consensus        68 f~p   70 (134)
T PRK04148         68 FNP   70 (134)
T ss_pred             CCC
Confidence            765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.76  E-value=2.9e-07  Score=92.47  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++++|||||||+|..+..+++.+.+|++.|+++.+++.++.   .|..    ..++.+...|......+          
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~----~~~i~~~~~d~~~~~~~----------   98 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH----YKNVKFMCADVTSPDLN----------   98 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc----CCceEEEEecccccccC----------
Confidence            467899999999999999999999999999999998875432   3321    24566666665432110          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ....+||+|++..++|+-..  ...+++.+.++|+++|..+
T Consensus        99 -----------~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~  139 (475)
T PLN02336         99 -----------ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIF  139 (475)
T ss_pred             -----------CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence                       01348999999999988654  6789999999999988544

>PLN03075 nicotianamine synthase; Provisional

Probab=98.75  E-value=8.9e-08  Score=89.94  Aligned_cols=101  Identities=14%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCc-cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~G-tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|+|+||| .|+.++.+++.   +.++++.|.++++++.+++++......   ..++.+...|..+...        
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~~--------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVTE--------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhccc--------
Confidence            77999999999 55888877754   468999999999999999999652221   3568888888765411        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~~  246 (335)
                                     ..++||+|++.=++|. .+....+++.+.+.|++||.
T Consensus       192 ---------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~  228 (296)
T PLN03075        192 ---------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGAL  228 (296)
T ss_pred             ---------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcE
Confidence                           1358999999944454 37899999999999999884

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.74  E-value=1.4e-07  Score=90.54  Aligned_cols=113  Identities=13%  Similarity=0.025  Sum_probs=82.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .||..+....   ..-+|.+|||+|||+|...+.++..+.+|++.|+++.++..++.|++.++.     .++.+...|..
T Consensus       169 ~la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~~~D~~  240 (329)
T TIGR01177       169 KLARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI-----EDFFVKRGDAT  240 (329)
T ss_pred             HHHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEEecchh
Confidence            3555554432   335688999999999999999998899999999999999999999988763     23555555544


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC----------cccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----------~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +...                       ....||+|++.-. |.          ......+++.+.++|+++|..+
T Consensus       241 ~l~~-----------------------~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv  291 (329)
T TIGR01177       241 KLPL-----------------------SSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV  291 (329)
T ss_pred             cCCc-----------------------ccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence            3210                       1247999988422 21          1336789999999999988654

This family is found exclusively in the Archaea.

>PRK06922 hypothetical protein; Provisional

Probab=98.74  E-value=8.6e-08  Score=98.08  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.|++.++.+...+.      .++.+...|-.+. +.       
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dL-p~-------  481 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINL-SS-------  481 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhC-cc-------
Confidence            357889999999999988887765  5799999999999999998876543      2344444443321 00       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC-------------cccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS-------------DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-------------~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   .-..++||+|+++-++++             ......+++.+.++|+|||..+
T Consensus       482 -------------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI  534 (677)
T PRK06922        482 -------------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII  534 (677)
T ss_pred             -------------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence                         002347999999877753             2456788999999999998654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.73  E-value=1.2e-07  Score=84.04  Aligned_cols=102  Identities=12%  Similarity=0.046  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+|+.  ..+|++.|+++.+++.+++|+..++     ..++.+...|..+....         
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-----l~ni~~i~~d~~~~~~~---------   81 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-----LKNLHVLCGDANELLDK---------   81 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-----CCCEEEEccCHHHHHHh---------
Confidence            4568999999999999999987  4689999999999999999998775     34677777765432110         


Q ss_pred             cccccccCcchhhccCCccEEEEe--ccccCcc------cHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAA--DVIYSDD------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlas--DviY~~~------~~~~L~~tl~~lL~~~~~  246 (335)
                                 ....+.+|.|+..  |.-+...      ..+.+++.+.++|++||.
T Consensus        82 -----------~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~  127 (194)
T TIGR00091        82 -----------FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGV  127 (194)
T ss_pred             -----------hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCE
Confidence                       0112368888875  2222111      126799999999999883

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK06202 hypothetical protein; Provisional

Probab=98.73  E-value=5.3e-08  Score=88.62  Aligned_cols=93  Identities=19%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh----C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~----~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      .++.+|||||||+|..+..+++.    |  .+|+++|+++++++.++.+...++        +.+...+-... +     
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~l-~-----  124 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--------VTFRQAVSDEL-V-----  124 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--------CeEEEEecccc-c-----
Confidence            45679999999999988887753    3  489999999999999988765332        22222211111 0     


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhcc
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMP  242 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~  242 (335)
                                       ...++||+|+++.++++-+.  ...+++.+.++++
T Consensus       125 -----------------~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        125 -----------------AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             -----------------ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence                             01348999999999998765  3457888888876

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.73  E-value=1.4e-07  Score=95.56  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.++.|+..|+.    ..++.+...||.+..+          
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~~----------  203 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENIE----------  203 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhCc----------
Confidence            3568999999999999988875  57999999999999999999988863    2467777777754311          


Q ss_pred             cccccccCcchhhccCCccEEEEec--------------cc-cCc-----------ccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAAD--------------VI-YSD-----------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasD--------------vi-Y~~-----------~~~~~L~~tl~~lL~~~~~  246 (335)
                                    .++||+|++.-              +. |.+           +....+++.+.++|+++|.
T Consensus       204 --------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~  264 (506)
T PRK01544        204 --------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK  264 (506)
T ss_pred             --------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence                          23799999832              21 211           1245567788889999874

>PHA03411 putative methyltransferase; Provisional

Probab=98.72  E-value=2.9e-07  Score=85.49  Aligned_cols=103  Identities=9%  Similarity=-0.034  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||+|||+|.+++.+++.  +.+|+++|+++.+++.+++|..          ++.+...|..+..           
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~-----------  122 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE-----------  122 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-----------
Confidence            3468999999999999988776  4699999999999999988631          2334444432210           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCccc--------------------HHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--------------------TDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--------------------~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                                   ...+||+||+...+++...                    ...+++....+|+++|.       ++++
T Consensus       123 -------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~-------~~~~  182 (279)
T PHA03411        123 -------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGS-------AGFA  182 (279)
T ss_pred             -------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCce-------EEEE
Confidence                         1247999999888876311                    35677777888888772       5555


Q ss_pred             Eeeecc
Q 019839          258 LEKRYN  263 (335)
Q Consensus       258 ~~~R~~  263 (335)
                      +.-+..
T Consensus       183 yss~~~  188 (279)
T PHA03411        183 YSGRPY  188 (279)
T ss_pred             Eecccc
Confidence            655443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.72  E-value=1.5e-07  Score=83.34  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+.|++||||+||+|.+|+.++..|+ +|++.|.++.+++.+++|++.|+.    ..++.+...|-.+....        
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~--------  114 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKF--------  114 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHH--------
Confidence            36899999999999999999999975 899999999999999999999974    23566665554221000        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR  239 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~  239 (335)
                                  ......++.||..|.-|.....+.++..+..
T Consensus       115 ------------~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~  145 (189)
T TIGR00095       115 ------------LAKKPTFDNVIYLDPPFFNGALQALLELCEN  145 (189)
T ss_pred             ------------hhccCCCceEEEECcCCCCCcHHHHHHHHHH
Confidence                        0011245666777888877777777666644

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.68  E-value=3.3e-07  Score=87.51  Aligned_cols=109  Identities=20%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      ..+++..+ +..   ...++.+|||+|||+|..++.+++..   .+|++.|.++.+++.+++|+..++.     .++.+.
T Consensus        66 p~l~a~ll-~~L---~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i  136 (322)
T PRK13943         66 PSLMALFM-EWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFV  136 (322)
T ss_pred             HHHHHHHH-Hhc---CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEE
Confidence            44445444 332   34578899999999999999998863   3699999999999999999988763     456666


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|..+..+                       ...+||+|+.+-.+.      .+...+.+.|+++|..+
T Consensus       137 ~gD~~~~~~-----------------------~~~~fD~Ii~~~g~~------~ip~~~~~~LkpgG~Lv  177 (322)
T PRK13943        137 CGDGYYGVP-----------------------EFAPYDVIFVTVGVD------EVPETWFTQLKEGGRVI  177 (322)
T ss_pred             eCChhhccc-----------------------ccCCccEEEECCchH------HhHHHHHHhcCCCCEEE
Confidence            655433211                       124799999863322      23345667889988644

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.67  E-value=2.9e-07  Score=83.33  Aligned_cols=116  Identities=11%  Similarity=0.150  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCC----------CC
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF----------SH  171 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~----------~~  171 (335)
                      .-.|.+|+...    ...++.+||++|||.|.-++.+|..|.+|++.|+++.+++.+..   .|+...          ..
T Consensus        23 ~~~L~~~~~~~----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~   95 (218)
T PRK13255         23 NPLLQKYWPAL----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQ   95 (218)
T ss_pred             CHHHHHHHHhh----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccc
Confidence            34566666432    12357799999999999999999999999999999999987632   222110          00


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCc
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ..++++...|..+..+                      ...+.||+|+.+-++.+  ++.-...++.|.++|+|||.
T Consensus        96 ~~~v~~~~~D~~~l~~----------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~  150 (218)
T PRK13255         96 AGEITIYCGDFFALTA----------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR  150 (218)
T ss_pred             cCceEEEECcccCCCc----------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence            2345555555444311                      11247999998776654  35667889999999999885

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.67  E-value=3.3e-07  Score=83.81  Aligned_cols=104  Identities=11%  Similarity=0.084  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|++.|+++++++.+++|++.++.    ..++.+...|..+..+...     
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~-----  137 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLL-----  137 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHH-----
Confidence            57889999999999988888765   46999999999999999999999875    3567887777654311000     


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  .....++||+|+. |.  +.+....++..+.+++++||-
T Consensus       138 ------------~~~~~~~fD~Vfi-Da--~k~~y~~~~~~~~~ll~~GG~  173 (234)
T PLN02781        138 ------------NNDPKPEFDFAFV-DA--DKPNYVHFHEQLLKLVKVGGI  173 (234)
T ss_pred             ------------hCCCCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCeE
Confidence                        0001358999987 21  124556788888999999873

>PTZ00146 fibrillarin; Provisional

Probab=98.65  E-value=3.9e-06  Score=78.73  Aligned_cols=125  Identities=15%  Similarity=0.108  Sum_probs=78.2

Q ss_pred             ccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839           94 VGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus        94 ~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      +-.++|+-- --||.-|+.-+..-...+|.+|||||||+|..+..+|...   ..|++.|+++.+++.+...+..     
T Consensus       105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----  179 (293)
T PTZ00146        105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----  179 (293)
T ss_pred             ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----
Confidence            358999861 1333334332211134688899999999999999999873   5899999998777554433321     


Q ss_pred             CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                        ..++.....|......              +      ......+|+|++.-  ..++....++..+.++|++++..
T Consensus       180 --r~NI~~I~~Da~~p~~--------------y------~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~  233 (293)
T PTZ00146        180 --RPNIVPIIEDARYPQK--------------Y------RMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHF  233 (293)
T ss_pred             --cCCCEEEECCccChhh--------------h------hcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEE
Confidence              1234444444322100              0      00124799998754  34566667778899999998853

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.65  E-value=1.1e-07  Score=88.59  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCccCH----HHHHHHHh-------CCEEEEecCchHHHHHHHHHHH----HccCC----------C-----
Q 019839          120 NGIISLELGAGTGL----AGILLSRV-------AWTVFLTDHGNYILDNCAKNVQ----LNSGV----------F-----  169 (335)
Q Consensus       120 ~g~~VLELG~GtGL----~gl~la~~-------~~~V~~TD~~~~~l~~~~~Nv~----~N~~~----------~-----  169 (335)
                      ++.+|+++|||||-    +++.++..       ..+|++||+++.+|+.+++++-    .....          .     
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999995    45555543       2589999999999999987641    10000          0     


Q ss_pred             -CC--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCC
Q 019839          170 -SH--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLG  244 (335)
Q Consensus       170 -~~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~  244 (335)
                       ..  ..++.+...|-.+..+                       ..++||+|++..|+++-  +....+++.+.++|+||
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-----------------------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG  235 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-----------------------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG  235 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-----------------------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence             00  1245555555444311                       13589999999998765  45668999999999998


Q ss_pred             Cc
Q 019839          245 SK  246 (335)
Q Consensus       245 ~~  246 (335)
                      |.
T Consensus       236 G~  237 (264)
T smart00138      236 GY  237 (264)
T ss_pred             eE
Confidence            84

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.64  E-value=3.1e-07  Score=91.69  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839           96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQ  172 (335)
Q Consensus        96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~  172 (335)
                      ..+++.+..++-.++.      ..+|.+|||+|||+|..++.++..   +.+|++.|.++.+++.+++|+..++.     
T Consensus       232 ~~vqd~~s~l~~~~l~------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----  300 (445)
T PRK14904        232 VSVQNPTQALACLLLN------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----  300 (445)
T ss_pred             EEEeCHHHHHHHHhcC------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----
Confidence            4777766555555543      357899999999999988888764   36899999999999999999988763     


Q ss_pred             CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccc-------cCc---------ccH
Q 019839          173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVI-------YSD---------DLT  230 (335)
Q Consensus       173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDvi-------Y~~---------~~~  230 (335)
                      .++.+...|.....                        ....||+|+.      +-++       |..         ...
T Consensus       301 ~~v~~~~~Da~~~~------------------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q  356 (445)
T PRK14904        301 TIIETIEGDARSFS------------------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ  356 (445)
T ss_pred             CeEEEEeCcccccc------------------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence            45677766654321                        1237999984      1111       111         123


Q ss_pred             HHHHHHHHHhccCCCcc
Q 019839          231 DALFHTLKRLMPLGSKK  247 (335)
Q Consensus       231 ~~L~~tl~~lL~~~~~~  247 (335)
                      ..++..+.+++++||..
T Consensus       357 ~~iL~~a~~~lkpgG~l  373 (445)
T PRK14904        357 AELLDHAASLLKPGGVL  373 (445)
T ss_pred             HHHHHHHHHhcCCCcEE
Confidence            46899999999998854

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.60  E-value=3.3e-07  Score=86.08  Aligned_cols=103  Identities=17%  Similarity=0.317  Sum_probs=82.4

Q ss_pred             CCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+|+|+.|||+|||.|++++.+|..| ++|++.+.+ +|.+.++.-++.|..    ..++.|....-.+          
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEd----------  237 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIED----------  237 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCcccc----------
Confidence            478999999999999999999999996 589999998 788999988888854    5788887766544          


Q ss_pred             CCccccccccCcchhhccCCccEEEEe---ccccCcccHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAA---DVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlas---DviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ++..++.|+||+-   -.+|+....+..+-. ++.|+|+|+-.
T Consensus       238 --------------ieLPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf  279 (517)
T KOG1500|consen  238 --------------IELPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF  279 (517)
T ss_pred             --------------ccCchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence                          3345699999974   456677777766554 48999998765

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.59  E-value=1.6e-07  Score=85.42  Aligned_cols=112  Identities=15%  Similarity=0.138  Sum_probs=76.3

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHH-HHHHHHHccCCCCCCCe
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN-CAKNVQLNSGVFSHQGS  174 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~-~~~Nv~~N~~~~~~~~~  174 (335)
                      .+++++.-|...+...   ...++|++|||+|||||..+..+++.| ++|++.|.++.++.. ++.|...-.     ...
T Consensus        55 ~vsr~~~kL~~~l~~~---~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~-----~~~  126 (228)
T TIGR00478        55 FVSRGGEKLKEALEEF---NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV-----LER  126 (228)
T ss_pred             hhhhhHHHHHHHHHhc---CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE-----eec
Confidence            6789999999998775   245799999999999999999999995 689999999866643 443321100     011


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..++.++|.+.++                       ....+|++++|-..        ++..+..+|++ +..+
T Consensus       127 ~ni~~~~~~~~~~-----------------------d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~  168 (228)
T TIGR00478       127 TNIRYVTPADIFP-----------------------DFATFDVSFISLIS--------ILPELDLLLNP-NDLT  168 (228)
T ss_pred             CCcccCCHhHcCC-----------------------CceeeeEEEeehHh--------HHHHHHHHhCc-CeEE
Confidence            2233455555421                       12367887776433        47788888887 5443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.59  E-value=4.6e-07  Score=90.45  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+|.+|||+|||+|..++.+++.   ..+|++.|+++.+++.+++|++.++.     .++.+...|+.+....       
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~-------  316 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEK-------  316 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccch-------
Confidence            46789999999999999998876   36999999999999999999998873     3577777776543110       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC-------c---------------ccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS-------D---------------DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-------~---------------~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ..+.||+|++---.+.       +               .....+++...++|++||..
T Consensus       317 ---------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l  375 (444)
T PRK14902        317 ---------------FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL  375 (444)
T ss_pred             ---------------hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence                           1147999985211110       1               01245788899999998753

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.56  E-value=1.1e-06  Score=87.35  Aligned_cols=102  Identities=21%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+|.+|||+|||+|..++.++..+  .+|++.|.++.+++.+++|+..++.      ++.+...|..+...         
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~---------  307 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQ---------  307 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchh---------
Confidence            578999999999999999988874  5999999999999999999998763      24555555433200         


Q ss_pred             ccccccccCcchhhccCCccEEEEec------cc-------cC--c-------ccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAAD------VI-------YS--D-------DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasD------vi-------Y~--~-------~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  .....+||.|++--      ++       |.  .       .....++....++|++||..
T Consensus       308 ------------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l  368 (427)
T PRK10901        308 ------------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL  368 (427)
T ss_pred             ------------hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence                        00124799998411      11       11  0       12346888999999998854

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.56  E-value=9.8e-07  Score=76.40  Aligned_cols=61  Identities=16%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ...+.+|||+|||+|..+..+++.+.+|++.|+++.+++.+++|+..+       .++.+...|..+.
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~   71 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKF   71 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcC
Confidence            356789999999999999999998899999999999999999988531       3567777766553

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.55  E-value=4.4e-07  Score=79.70  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHH-hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -+|.+|||||||.|.+--.+.. .+.++++.|++++.+..|.+            ..+.|.+.|..+....-        
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~------------rGv~Viq~Dld~gL~~f--------   71 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA------------RGVSVIQGDLDEGLADF--------   71 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH------------cCCCEEECCHHHhHhhC--------
Confidence            4678999999999954444443 57899999999866555542            23567888877753211        


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHh
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL  240 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~l  240 (335)
                                   ...+||+||.++++-....++.+++.+.+.
T Consensus        72 -------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV  101 (193)
T PF07021_consen   72 -------------PDQSFDYVILSQTLQAVRRPDEVLEEMLRV  101 (193)
T ss_pred             -------------CCCCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence                         346899999999999988888887776555

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.55  E-value=4.3e-07  Score=78.67  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCC-eEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGI-ISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~-~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      +-..+.+|+..+..-...-+.. +|||||||.|.+-.-+++.|  ...+++||++.++++++.-+++++.    ...|++
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f  122 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRF  122 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC----CcceeE
Confidence            4556778887764211122333 99999999999888888886  3599999999999997766677764    344999


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEe---ccccC-----cccHHHHHHHHHHhccCCCcc
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA---DVIYS-----DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlas---DviY~-----~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ..+|..++.                       ...++||+|+--   |.|--     .......+.++.++|+++|..
T Consensus       123 ~q~DI~~~~-----------------------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif  177 (227)
T KOG1271|consen  123 QQLDITDPD-----------------------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF  177 (227)
T ss_pred             EEeeccCCc-----------------------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence            999887751                       023467777631   22211     112255688999999998743

>PLN02672 methionine S-methyltransferase

Probab=98.55  E-value=4.2e-07  Score=98.22  Aligned_cols=84  Identities=17%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCC--------
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVF--------  169 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~--------  169 (335)
                      +-+..|.+.+....  ...+++++|||||||+|.+++.+++..  ++|+++|+++.+++.+++|+..|....        
T Consensus       100 peTE~lve~L~~~~--~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672        100 DWSFTFYEGLNRHP--DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             hhHHHHHHHHHhcc--cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            34667777743321  124678899999999999999999873  699999999999999999999985320        


Q ss_pred             ---CCCCeeEEEeccCCCC
Q 019839          170 ---SHQGSVHVRDLNWMNP  185 (335)
Q Consensus       170 ---~~~~~v~v~~ldW~~~  185 (335)
                         ....++.+...||.+.
T Consensus       178 ~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             ccccccccEEEEECchhhh
Confidence               0024688888888765

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.54  E-value=7.1e-07  Score=83.05  Aligned_cols=59  Identities=12%  Similarity=0.019  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+|.+|||+|||+|-.++.+|..   ...|++.|.++.+++.+++|++.++.     .++.+...|.
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~  131 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDG  131 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCH
Confidence            47889999999999999888775   35899999999999999999999873     4566666654

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.53  E-value=1.4e-06  Score=86.46  Aligned_cols=121  Identities=16%  Similarity=0.141  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      ++..++.++       ...+|.+|||+|||+|..++.++..  ..+|++.|.++.+++.++.|++.++.    ...+...
T Consensus       226 ~s~~~~~~L-------~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~  294 (426)
T TIGR00563       226 SAQWVATWL-------APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL----TIKAETK  294 (426)
T ss_pred             HHHHHHHHh-------CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEe
Confidence            455555555       2357889999999999999998876  36999999999999999999998763    1122223


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccccCccc----------------HHHHHHH
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVIYSDDL----------------TDALFHT  236 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDviY~~~~----------------~~~L~~t  236 (335)
                      ..|......                |     ....+||.|+.      +.++...+.                ...++..
T Consensus       295 ~~d~~~~~~----------------~-----~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~  353 (426)
T TIGR00563       295 DGDGRGPSQ----------------W-----AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA  353 (426)
T ss_pred             ccccccccc----------------c-----ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH
Confidence            333221100                0     02347999984      334433222                4678889


Q ss_pred             HHHhccCCCcceeeceEEEEEEe
Q 019839          237 LKRLMPLGSKKVLVNMVLYLALE  259 (335)
Q Consensus       237 l~~lL~~~~~~~~~~p~i~ia~~  259 (335)
                      ..++|++||..      +|..|.
T Consensus       354 a~~~LkpgG~l------vystcs  370 (426)
T TIGR00563       354 IWPLLKTGGTL------VYATCS  370 (426)
T ss_pred             HHHhcCCCcEE------EEEeCC
Confidence            99999998754      566553

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.52  E-value=8.6e-07  Score=88.26  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+|.+|||+|||+|..++.++..   ..+|++.|.++.+++.+++|++.++.     .++.+...|-.+.....     
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~-----  319 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELK-----  319 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccccc-----
Confidence            357889999999999999988876   25899999999999999999999873     45777666644321000     


Q ss_pred             CCccccccccCcchhhccCCccEEEEe------ccccCcc----------------cHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAA------DVIYSDD----------------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlas------DviY~~~----------------~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ....+.||.|+.-      .++...+                ....++..+.+++++||..
T Consensus       320 --------------~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~l  380 (434)
T PRK14901        320 --------------PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTL  380 (434)
T ss_pred             --------------ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence                          0012479999951      2333222                1467888999999998754

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.51  E-value=5.4e-07  Score=79.78  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .+.+|||+|||+|..+..++.. +..++++|+++.+++.++.+            ++.+...+..+..+.          
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~----------   70 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEA----------   70 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccc----------
Confidence            5679999999999988888755 56889999999888776531            123333333221100          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMP  242 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~  242 (335)
                                 ...++||+|+++.++++......+++.+.+.++
T Consensus        71 -----------~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        71 -----------FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             -----------cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence                       013479999999999998888888777776643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=4.6e-07  Score=79.93  Aligned_cols=98  Identities=16%  Similarity=0.120  Sum_probs=72.9

Q ss_pred             eEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE-EEeccCCCCCCCCccCCCCCcccc
Q 019839          123 ISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH-VRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~-v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      .|||+|||||.-==..- +-+.+|++.|-++.|-+.+.+.+..|..     .++. +...+ ++..+.            
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~-ge~l~~------------  140 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVAD-GENLPQ------------  140 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeec-hhcCcc------------
Confidence            58999999995322221 2367999999999999999999998863     3333 22222 222111            


Q ss_pred             ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                               -..+++|+|+++=|+-..+.....++.+.++|+|+|..
T Consensus       141 ---------l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i  178 (252)
T KOG4300|consen  141 ---------LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI  178 (252)
T ss_pred             ---------cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence                     13568999999999999999999999999999998853

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.50  E-value=1.7e-07  Score=84.41  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839          122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER  201 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~  201 (335)
                      +.++|+|||+|.+.+.+|..-++|++||.++.||+.+++.-...-..         ..-...++.            ...
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~---------t~~~ms~~~------------~v~   93 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH---------TPSTMSSDE------------MVD   93 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc---------CCccccccc------------ccc
Confidence            38999999999999999999899999999999999776432111100         000000000            000


Q ss_pred             cccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          202 YSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       202 ~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                            .+...++.|+|+++-|+|.-++.. +.+.+.++|++.|+.+
T Consensus        94 ------L~g~e~SVDlI~~Aqa~HWFdle~-fy~~~~rvLRk~Gg~i  133 (261)
T KOG3010|consen   94 ------LLGGEESVDLITAAQAVHWFDLER-FYKEAYRVLRKDGGLI  133 (261)
T ss_pred             ------ccCCCcceeeehhhhhHHhhchHH-HHHHHHHHcCCCCCEE
Confidence                  011245899999999999887654 7999999999988655

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.50  E-value=4.9e-07  Score=86.21  Aligned_cols=87  Identities=14%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEec-cCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDL-NWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~l-dW~~~~~~~~~~~~~  195 (335)
                      .+.+|||||||+|.+..+++..  +.++++||+++.+++.++.|++.| +.    ..++.++.- +-.+....       
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~-------  182 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKG-------  182 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhc-------
Confidence            4679999999999776666544  679999999999999999999999 54    345665431 11110000       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCccc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL  229 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~  229 (335)
                                  .....+.||+|++.--+|....
T Consensus       183 ------------i~~~~~~fDlivcNPPf~~s~~  204 (321)
T PRK11727        183 ------------IIHKNERFDATLCNPPFHASAA  204 (321)
T ss_pred             ------------ccccCCceEEEEeCCCCcCcch
Confidence                        0012358999999998887543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2e-06  Score=78.43  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=83.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ....|.+|||-|.|+|..+.++|+. |  .+|+.-|+.++.++.+++|++.-+.    ..++....-|-.+..       
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~~~~Dv~~~~-------  159 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTLKLGDVREGI-------  159 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEEEeccccccc-------
Confidence            6679999999999999999999975 3  5899999999999999999988643    233655554433331       


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                       ....||.|+.     |.+.....+..+..+|++|+..+     +|+.+
T Consensus       160 -----------------~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~-----~y~P~  197 (256)
T COG2519         160 -----------------DEEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVV-----VYSPT  197 (256)
T ss_pred             -----------------cccccCEEEE-----cCCChHHHHHHHHHHhCCCcEEE-----EEcCC
Confidence                             1238999998     88999999999999999998777     77654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.49  E-value=6.1e-07  Score=83.74  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC-----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~-----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .+.+|||+|||+|..+..+++..     .+|+++|+++.+++.++++.          .++.+...|..+. +       
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~l-p-------  146 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRL-P-------  146 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccC-C-------
Confidence            45789999999999888877652     37999999999999887652          1233444333221 0       


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     -..+.||+|++..   .+    ..++.+.++|+++|..+
T Consensus       147 ---------------~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li  178 (272)
T PRK11088        147 ---------------FADQSLDAIIRIY---AP----CKAEELARVVKPGGIVI  178 (272)
T ss_pred             ---------------CcCCceeEEEEec---CC----CCHHHHHhhccCCCEEE
Confidence                           0134799999753   22    34578899999988543

>TIGR03438 probable methyltransferase

Probab=98.48  E-value=1.2e-06  Score=83.03  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+.+|||||||+|.....+++.   +.+|++.|++++||+.+++++.....    ..++.....|..+..+-.       
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~-------  131 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALP-------  131 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhh-------
Confidence            5689999999999988877766   57999999999999999998875431    234555555654421100       


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~  246 (335)
                               .. . ......+++..-.+++.  +....+++.+.+.|+|||.
T Consensus       132 ---------~~-~-~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~  172 (301)
T TIGR03438       132 ---------PE-P-AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG  172 (301)
T ss_pred             ---------cc-c-ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence                     00 0 00122334444466654  4566799999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.48  E-value=1e-06  Score=80.83  Aligned_cols=78  Identities=19%  Similarity=0.135  Sum_probs=61.4

Q ss_pred             ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      |+. ..+.+++.....+...+++..+||+|||+|..++.+++.  -.+|+++|.++.++.++.+|++++..    .+.+.
T Consensus       128 pET-EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~  202 (328)
T KOG2904|consen  128 PET-EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIE  202 (328)
T ss_pred             ccH-HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cCceE
Confidence            443 445566665544445678889999999999999998876  36899999999999999999999986    57777


Q ss_pred             EEecc
Q 019839          177 VRDLN  181 (335)
Q Consensus       177 v~~ld  181 (335)
                      +...+
T Consensus       203 v~~~~  207 (328)
T KOG2904|consen  203 VIHNI  207 (328)
T ss_pred             EEecc
Confidence            77543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.47  E-value=1.3e-06  Score=78.50  Aligned_cols=110  Identities=17%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      +..+.|..+...    ..-+|.+|||+|||+|..+-++|++ |.  +|+..|.++.+.+.+++|+...+     ..++.+
T Consensus        57 ~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~  127 (209)
T PF01135_consen   57 APSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEV  127 (209)
T ss_dssp             -HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEE
T ss_pred             HHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeE
Confidence            444455544433    4678999999999999999888887 43  79999999999999999999877     357787


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ...|-...+                       ....+||.|+..-.+.  ...    ..+.+.|++||..+
T Consensus       128 ~~gdg~~g~-----------------------~~~apfD~I~v~~a~~--~ip----~~l~~qL~~gGrLV  169 (209)
T PF01135_consen  128 VVGDGSEGW-----------------------PEEAPFDRIIVTAAVP--EIP----EALLEQLKPGGRLV  169 (209)
T ss_dssp             EES-GGGTT-----------------------GGG-SEEEEEESSBBS--S------HHHHHTEEEEEEEE
T ss_pred             EEcchhhcc-----------------------ccCCCcCEEEEeeccc--hHH----HHHHHhcCCCcEEE
Confidence            777633322                       1345899999975553  222    33556688888654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK04457 spermidine synthase; Provisional

Probab=98.45  E-value=7.4e-07  Score=82.86  Aligned_cols=99  Identities=11%  Similarity=0.139  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++++|||||||+|..+..+++.  +.+|++.|+++++++.+++++..+..    ..++++...|..+...          
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~----------  131 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIA----------  131 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHH----------
Confidence            5679999999999999888776  46899999999999999999865432    3567777666433211          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc------cHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...++||+|+. |. |+..      .+..+++.+.++|+++|.
T Consensus       132 ------------~~~~~yD~I~~-D~-~~~~~~~~~l~t~efl~~~~~~L~pgGv  172 (262)
T PRK04457        132 ------------VHRHSTDVILV-DG-FDGEGIIDALCTQPFFDDCRNALSSDGI  172 (262)
T ss_pred             ------------hCCCCCCEEEE-eC-CCCCCCccccCcHHHHHHHHHhcCCCcE
Confidence                        01247999986 43 3322      247899999999999884

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.45  E-value=2.7e-06  Score=76.51  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=66.4

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+|.+|||||||+|..+..+++..   .+|++.|+++ +          +.     ..++.+...|+.+.....     
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-----~~~v~~i~~D~~~~~~~~-----  107 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-----IVGVDFLQGDFRDELVLK-----  107 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-----CCCcEEEecCCCChHHHH-----
Confidence            3578899999999999998888773   5899999986 1          11     234677777876641000     


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcc-----------cHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----------LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----------~~~~L~~tl~~lL~~~~~~~  248 (335)
                            ..    ......++||+|++.-+.+...           ....+++.+.++|++||..+
T Consensus       108 ------~i----~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v  162 (209)
T PRK11188        108 ------AL----LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV  162 (209)
T ss_pred             ------HH----HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence                  00    0001235899999965444321           12568899999999998543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.45  E-value=2.8e-06  Score=82.71  Aligned_cols=102  Identities=10%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..+..+||||||+|...+.+|+.  ...+++.|+++.++..+.+++..++     ..++.+...|.......        
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~--------  187 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLEL--------  187 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhh--------
Confidence            45679999999999999999988  4789999999999999999998876     35688777775432110        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcc------cHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------~~~~L~~tl~~lL~~~~~  246 (335)
                                   -..+.+|.|+..-...++.      ..+.+++.+.++|++||.
T Consensus       188 -------------~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~  230 (390)
T PRK14121        188 -------------LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT  230 (390)
T ss_pred             -------------CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence                         0234789998642221111      237899999999999884

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.45  E-value=1.2e-06  Score=85.80  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             CCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +.+|||++||+|..|+.+|+..  .+|++.|+++.+++.+++|++.|+.     .++.+...|.....            
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l------------  120 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALL------------  120 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHH------------
Confidence            4689999999999999998863  4899999999999999999999984     33444444432210            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                                 ....+||+|+. |. |  .....++...-+.+++++  +     +|++
T Consensus       121 -----------~~~~~fD~V~l-DP-~--Gs~~~~l~~al~~~~~~g--i-----lyvS  157 (382)
T PRK04338        121 -----------HEERKFDVVDI-DP-F--GSPAPFLDSAIRSVKRGG--L-----LCVT  157 (382)
T ss_pred             -----------hhcCCCCEEEE-CC-C--CCcHHHHHHHHHHhcCCC--E-----EEEE
Confidence                       00246999998 55 2  455667777444456654  5     7777

>PHA03412 putative methyltransferase; Provisional

Probab=98.44  E-value=1.6e-06  Score=78.80  Aligned_cols=92  Identities=7%  Similarity=0.011  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .+.+|||+|||+|.+++.+++.     ..+|++.|+++.+++.+++|+.          ++.+...|.....        
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~--------  110 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTE--------  110 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhccc--------
Confidence            4779999999999999998874     3589999999999999998853          1334444433210        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCc------------ccHHHHHHHHHHhccCCC
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------------DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------------~~~~~L~~tl~~lL~~~~  245 (335)
                                      ...+||+||+.--++..            .....|+....+|+++|.
T Consensus       111 ----------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~  157 (241)
T PHA03412        111 ----------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT  157 (241)
T ss_pred             ----------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence                            12479999997777632            225567788888777654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.41  E-value=3.9e-06  Score=83.44  Aligned_cols=108  Identities=11%  Similarity=0.072  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+|.+|||+|||+|--++.++..   +.+|++.|+++.+++.++.|++..+.     .++.+...|......        
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~--------  302 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTE--------  302 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhh--------
Confidence            57889999999999988888876   46999999999999999999988763     457777776554210        


Q ss_pred             CccccccccCcchhhccCCccEEEEe-cc-----ccCc----------------ccHHHHHHHHHHhccCCCcceeeceE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAA-DV-----IYSD----------------DLTDALFHTLKRLMPLGSKKVLVNMV  253 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlas-Dv-----iY~~----------------~~~~~L~~tl~~lL~~~~~~~~~~p~  253 (335)
                                    ...++||.|++- -|     +-..                .....++....+++++||. +     
T Consensus       303 --------------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~-L-----  362 (431)
T PRK14903        303 --------------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI-L-----  362 (431)
T ss_pred             --------------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-----
Confidence                          012479999861 11     1111                1235668888899999875 4     


Q ss_pred             EEEEEe
Q 019839          254 LYLALE  259 (335)
Q Consensus       254 i~ia~~  259 (335)
                      +|..|.
T Consensus       363 vYsTCs  368 (431)
T PRK14903        363 LYSTCT  368 (431)
T ss_pred             EEEECC
Confidence            676664

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.41  E-value=2.3e-06  Score=85.31  Aligned_cols=111  Identities=14%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          120 NGIISLELGAGTGLAGILLSRVA------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      +++.||++|||+|.++..+++.|      .+|++.+-++.+...++..+..|+.    ..+|++...|-.+-        
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v--------  253 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREV--------  253 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTS--------
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCC--------
Confidence            57899999999999998888775      5999999999888888877778864    46788888775553        


Q ss_pred             CCCccccccccCcchhhccCCccEEEE--eccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLA--ADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                      ....++|+||+  -..+-+.+.....+....++|+++|..+...-+.|++-
T Consensus       254 ----------------~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaP  304 (448)
T PF05185_consen  254 ----------------ELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAP  304 (448)
T ss_dssp             ----------------CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEE
T ss_pred             ----------------CCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEE
Confidence                            23448999996  22333445666678889999999876554444566654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.38  E-value=8.5e-06  Score=79.54  Aligned_cols=105  Identities=15%  Similarity=0.057  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++||+|=|=||..|+.+|+.|+ +||..|.+..+|+.+++|+++|+...   .++.+...|-.              
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf--------------  278 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVF--------------  278 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHH--------------
Confidence            5699999999999999999999987 99999999999999999999999642   33444433321              


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~  245 (335)
                           .|=........+||+||.=..-|-         ...+..|+..+.++|+|+|
T Consensus       279 -----~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG  330 (393)
T COG1092         279 -----KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGG  330 (393)
T ss_pred             -----HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCC
Confidence                 121111223459999998322222         1246778889999999988

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=4e-06  Score=72.63  Aligned_cols=126  Identities=20%  Similarity=0.293  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      .+++|.+-|......-.....+-+||||||+|.++-.+++.   ...+.+||++|.+++...+-+..|+.      ++.+
T Consensus        24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~   97 (209)
T KOG3191|consen   24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDV   97 (209)
T ss_pred             hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccce
Confidence            45666666654321001112567999999999999998887   35799999999999999999999974      3445


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecc--------c--------cC-----cccHHHHHHH
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADV--------I--------YS-----DDLTDALFHT  236 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDv--------i--------Y~-----~~~~~~L~~t  236 (335)
                      ..-|......                        .++.|+++-.--        +        |-     .+.++.|+..
T Consensus        98 V~tdl~~~l~------------------------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~  153 (209)
T KOG3191|consen   98 VRTDLLSGLR------------------------NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ  153 (209)
T ss_pred             eehhHHhhhc------------------------cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh
Confidence            5555443311                        134555543211        1        10     2347888888


Q ss_pred             HHHhccCCCcceeeceEEEEEEeeecc
Q 019839          237 LKRLMPLGSKKVLVNMVLYLALEKRYN  263 (335)
Q Consensus       237 l~~lL~~~~~~~~~~p~i~ia~~~R~~  263 (335)
                      +..+|++.|  +     +|+..-+|+.
T Consensus       154 v~~iLSp~G--v-----~Ylv~~~~N~  173 (209)
T KOG3191|consen  154 VPDILSPRG--V-----FYLVALRANK  173 (209)
T ss_pred             hhhhcCcCc--e-----EEeeehhhcC
Confidence            999998866  5     7776655544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.38  E-value=2.4e-06  Score=79.26  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      -+++.+.+..   ...++.+|||+|||+|..++.+++.+.+|++.|+++.+++.++.|+..       ..++.+...|..
T Consensus        16 ~~~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~   85 (258)
T PRK14896         16 RVVDRIVEYA---EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDAL   85 (258)
T ss_pred             HHHHHHHHhc---CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccc
Confidence            3455555543   445789999999999999999999999999999999999999988753       145777777765


Q ss_pred             C
Q 019839          184 N  184 (335)
Q Consensus       184 ~  184 (335)
                      +
T Consensus        86 ~   86 (258)
T PRK14896         86 K   86 (258)
T ss_pred             c
Confidence            4

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.37  E-value=5.3e-06  Score=76.03  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE-EEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH-VRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~-v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..+..++||||||.|-+...++..-.+|++|+.++.|...+++            .... +-..+|.+.           
T Consensus        92 ~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~------------kg~~vl~~~~w~~~-----------  148 (265)
T PF05219_consen   92 DWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK------------KGFTVLDIDDWQQT-----------  148 (265)
T ss_pred             cccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh------------CCCeEEehhhhhcc-----------
Confidence            3567899999999999999999998999999999877665543            1122 233446543           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ..+||+|.|-.++=.-..+-.|++.|++.|+|+|..+
T Consensus       149 ---------------~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li  185 (265)
T PF05219_consen  149 ---------------DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI  185 (265)
T ss_pred             ---------------CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence                           2489999999999888999999999999999988655

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02476 O-methyltransferase

Probab=98.36  E-value=5.5e-06  Score=77.42  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+.++|||+|+|+|..++.+|+.   +.+|+..|.+++.++.+++|++.++.    ..++.+...+..+..+..      
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e~L~~l------  186 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAESLKSM------  186 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHH------
Confidence            57899999999999999999975   45799999999999999999999875    346777766544321100      


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                             .    .....++||+|+.- .  +......+++.+.++|++||-
T Consensus       187 -------~----~~~~~~~FD~VFID-a--~K~~Y~~y~e~~l~lL~~GGv  223 (278)
T PLN02476        187 -------I----QNGEGSSYDFAFVD-A--DKRMYQDYFELLLQLVRVGGV  223 (278)
T ss_pred             -------H----hcccCCCCCEEEEC-C--CHHHHHHHHHHHHHhcCCCcE
Confidence                   0    00012579998861 1  235677888899999999873

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.35  E-value=4.9e-07  Score=79.61  Aligned_cols=102  Identities=18%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.|.+||||=||+|..|+-+...| ++|++.|.++.++..+++|++.-+.    ..++.+...|.......         
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~~~~l~~---------  107 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDAFKFLLK---------  107 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHHHHH---------
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCHHHHHHh---------
Confidence            789999999999999999888776 6999999999999999999987553    23466666654332100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccH-HHHHHHHH--HhccCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLT-DALFHTLK--RLMPLG  244 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~-~~L~~tl~--~lL~~~  244 (335)
                                ......+||+|++ |.=|..... ..++..|.  .+|+++
T Consensus       108 ----------~~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~  146 (183)
T PF03602_consen  108 ----------LAKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNED  146 (183)
T ss_dssp             ----------HHHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEE
T ss_pred             ----------hcccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCC
Confidence                      0112468999976 666666663 66677666  455543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.34  E-value=4.2e-06  Score=75.46  Aligned_cols=99  Identities=7%  Similarity=0.007  Sum_probs=78.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe-ccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD-LNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~-ldW~~~~~~~~~~~~  194 (335)
                      ...++|||+|.++|..+|.+|..   ..+++.+|++++..+.+++|++.-+.    ..++.... +|+.+....      
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gdal~~l~~------  127 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGDALDVLSR------  127 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCcHHHHHHh------
Confidence            47899999999999999999987   25899999999999999999998775    34566666 566654211      


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                     ...++||+|+.=   .+......++..+.++|++||
T Consensus       128 ---------------~~~~~fDliFID---adK~~yp~~le~~~~lLr~GG  160 (219)
T COG4122         128 ---------------LLDGSFDLVFID---ADKADYPEYLERALPLLRPGG  160 (219)
T ss_pred             ---------------ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCc
Confidence                           124689999871   134677889999999999987

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.34  E-value=1e-06  Score=78.54  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHH--hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~--~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .-+|.+|||+-||.|..+|.+|+  .++.|++.|.+|.+++.+++|+++|+.    ..++.+...|..+..+        
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~--------  166 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP--------  166 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG-----------
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC--------
Confidence            35788999999999999999999  578999999999999999999999985    4568888887655421        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                      ...+|-||+.-    +.....++.....+++++|
T Consensus       167 ----------------~~~~drvim~l----p~~~~~fl~~~~~~~~~~g  196 (200)
T PF02475_consen  167 ----------------EGKFDRVIMNL----PESSLEFLDAALSLLKEGG  196 (200)
T ss_dssp             ----------------TT-EEEEEE------TSSGGGGHHHHHHHEEEEE
T ss_pred             ----------------ccccCEEEECC----hHHHHHHHHHHHHHhcCCc
Confidence                            34799988853    4444557777778887654

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.34  E-value=2.9e-06  Score=80.16  Aligned_cols=74  Identities=19%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.+....   ...++.+|||+|||+|..+..++..+.+|++.|+++.+++.+++|+..+..    ..++.+...|+.+
T Consensus        24 i~~~Iv~~~---~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal~   96 (294)
T PTZ00338         24 VLDKIVEKA---AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDALK   96 (294)
T ss_pred             HHHHHHHhc---CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHhh
Confidence            444555542   445788999999999999999998889999999999999999999876542    2568888877765


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        97 ~   97 (294)
T PTZ00338         97 T   97 (294)
T ss_pred             h
Confidence            3

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.31  E-value=2.7e-06  Score=79.50  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.+.+..   ...++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.|+..        .++.+...|+.+
T Consensus        30 i~~~i~~~l---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~   98 (272)
T PRK00274         30 ILDKIVDAA---GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALK   98 (272)
T ss_pred             HHHHHHHhc---CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhc
Confidence            345555543   345778999999999999999999988999999999999999887632        357788888766


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        99 ~   99 (272)
T PRK00274         99 V   99 (272)
T ss_pred             C
Confidence            4

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.31  E-value=5e-06  Score=74.52  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+.++|||+|+|+|..++.+|+.   +.+|+..|.+++..+.+++|++..+.    ..++++...+..+..+..      
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l------  113 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPEL------  113 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHH------
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHH------
Confidence            46789999999999999999986   57999999999999999999998764    357888877654421100      


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                             .    .....++||+|+.--   +.......++.+.++|++||
T Consensus       114 -------~----~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~gg  149 (205)
T PF01596_consen  114 -------A----NDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGG  149 (205)
T ss_dssp             -------H----HTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEE
T ss_pred             -------H----hccCCCceeEEEEcc---cccchhhHHHHHhhhccCCe
Confidence                   0    000124899998721   35667778888889999877

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.31  E-value=2.7e-06  Score=75.71  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..-.-.+|.|||||+|-..-.+++.  ++.|++.|-+++||+.++..          ..++++...|-.+-.        
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~w~--------   88 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRTWK--------   88 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhhcC--------
Confidence            3445679999999999777777766  78999999999999888543          234455444433321        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                      ....+|+|+++-++..-+.+..|+.-+-..|.|||-
T Consensus        89 ----------------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~  124 (257)
T COG4106          89 ----------------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV  124 (257)
T ss_pred             ----------------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence                            234799999999999999999999999999999873

>PRK00811 spermidine synthase; Provisional

Probab=98.30  E-value=6.7e-06  Score=77.34  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHcc-CCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNS-GVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~-~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      +.++||+||||.|.++..+++.  ..+|++.|+++.+++.+++++.... .... ..++++...|-.....         
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~-d~rv~v~~~Da~~~l~---------  145 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD-DPRVELVIGDGIKFVA---------  145 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc-CCceEEEECchHHHHh---------
Confidence            5689999999999999888876  3689999999999999999875422 1111 3566666555332110         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccc--cCcc---cHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVI--YSDD---LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDvi--Y~~~---~~~~L~~tl~~lL~~~~  245 (335)
                                   ...++||+|++ |+.  +...   ....+++.++++|+++|
T Consensus       146 -------------~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gG  185 (283)
T PRK00811        146 -------------ETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDG  185 (283)
T ss_pred             -------------hCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence                         02358999997 331  1111   24678899999999988

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.27  E-value=1.1e-05  Score=71.86  Aligned_cols=140  Identities=14%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             eEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      +|||||||||--+...|+.  .-+..-||+++..+..++..+...+....    .....+|-....-             
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv----~~P~~lDv~~~~w-------------   90 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV----RPPLALDVSAPPW-------------   90 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc----CCCeEeecCCCCC-------------
Confidence            7999999999988888877  45788999999888888888877653211    1122333332210             


Q ss_pred             ccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhH
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSH  278 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~  278 (335)
                        .|..........||.|+++.++|-.  +.++.|++...++|+++|..+     +|=.+...-.+|       +++=..
T Consensus        91 --~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~-----~YGPF~~~G~~t-------s~SN~~  156 (204)
T PF06080_consen   91 --PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF-----LYGPFNRDGKFT-------SESNAA  156 (204)
T ss_pred             --ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE-----EeCCcccCCEeC-------CcHHHH
Confidence              0100000124589999999999985  578999999999999998766     666665554443       355567


Q ss_pred             HHHHHhhhhcccccc
Q 019839          279 FRSYIMEEGEHRRFE  293 (335)
Q Consensus       279 f~~~l~~~~~~~~~~  293 (335)
                      |...|..++..-|++
T Consensus       157 FD~sLr~rdp~~GiR  171 (204)
T PF06080_consen  157 FDASLRSRDPEWGIR  171 (204)
T ss_pred             HHHHHhcCCCCcCcc
Confidence            888887776544443

The function of this family is unknown.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.26  E-value=7.1e-06  Score=72.22  Aligned_cols=101  Identities=15%  Similarity=0.045  Sum_probs=63.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...+|.+|||+|||+|..+..+++..   .+|+++|+++.+          .      ..++.+...|+.+.....    
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------~~~i~~~~~d~~~~~~~~----   88 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------IENVDFIRGDFTDEEVLN----   88 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------CCCceEEEeeCCChhHHH----
Confidence            45688999999999999888887763   479999999743          1      123455555654421000    


Q ss_pred             CCCccccccccCcchhhccCCccEEEEecccc-----Cc------ccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIY-----SD------DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY-----~~------~~~~~L~~tl~~lL~~~~~~~  248 (335)
                             ..    .......+||+|++.-..+     ..      ...+.+++.+.++|+++|..+
T Consensus        89 -------~l----~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv  143 (188)
T TIGR00438        89 -------KI----RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV  143 (188)
T ss_pred             -------HH----HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence                   00    0001134799999743211     11      123678899999999988543

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.24  E-value=1.2e-05  Score=73.42  Aligned_cols=93  Identities=16%  Similarity=0.269  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++|||||.|.|..++.+++.  +.+++..|. |++++.++.           ..++.+...|+.+..           
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~-----------  156 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPL-----------  156 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCC-----------
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhh-----------
Confidence            4468999999999999999887  578999999 588888877           167999999988542           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCC--Ccceee
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLG--SKKVLV  250 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~--~~~~~~  250 (335)
                                    . .+|+|+.+.|+|+  ++....+++.+.+.|+|+  |+.+|.
T Consensus       157 --------------P-~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  157 --------------P-VADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             --------------S-SESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             --------------c-cccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence                          1 3999999999987  456778999999999988  655433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00417 speE spermidine synthase

Probab=98.23  E-value=1.1e-05  Score=75.24  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.++||+||||+|.++..+++.  ..+|+++|+++.+++.+++++........ ..++++...|..+..           
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~-~~~v~i~~~D~~~~l-----------  139 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD-DPRVDLQIDDGFKFL-----------  139 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc-CCceEEEECchHHHH-----------
Confidence            4569999999999888777766  36899999999999999998754321111 244555443321110           


Q ss_pred             cccccccCcchhhccCCccEEEEecccc---Cccc--HHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIY---SDDL--TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY---~~~~--~~~L~~tl~~lL~~~~~  246 (335)
                                 ....++||+||+ |...   ....  ...+++.++++|+++|.
T Consensus       140 -----------~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~  181 (270)
T TIGR00417       140 -----------ADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGI  181 (270)
T ss_pred             -----------HhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence                       001358999997 3321   1111  56788999999999884

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.23  E-value=2.6e-05  Score=71.12  Aligned_cols=121  Identities=13%  Similarity=0.058  Sum_probs=85.8

Q ss_pred             CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--C------CEEEEecCchHHHHHHHHHHHH
Q 019839           93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--A------WTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus        93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~------~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      ..++++|..  .+..++       ...+|++|||++||||-++.-+.+.  .      .+|+..|++|+||+..++....
T Consensus        82 lGiHRlWKd--~~v~~L-------~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~  152 (296)
T KOG1540|consen   82 LGIHRLWKD--MFVSKL-------GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK  152 (296)
T ss_pred             cchhHHHHH--Hhhhcc-------CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence            456788842  222222       4568899999999999888777766  2      6899999999999999888765


Q ss_pred             ccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCC
Q 019839          165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG  244 (335)
Q Consensus       165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~  244 (335)
                      -... . ...+.+...|-.+.+                       -+...||....+-=|-+-.+.+..++...|.|+||
T Consensus       153 ~~l~-~-~~~~~w~~~dAE~Lp-----------------------Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  153 RPLK-A-SSRVEWVEGDAEDLP-----------------------FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG  207 (296)
T ss_pred             cCCC-c-CCceEEEeCCcccCC-----------------------CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence            3221 1 222333333322210                       02348999999988988999999999999999999


Q ss_pred             Ccc
Q 019839          245 SKK  247 (335)
Q Consensus       245 ~~~  247 (335)
                      |+.
T Consensus       208 Grf  210 (296)
T KOG1540|consen  208 GRF  210 (296)
T ss_pred             cEE
Confidence            853

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.18  E-value=9.9e-06  Score=74.54  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...+|.+|||-|.|+|.+++++|+. |  .+|+--|++++-.+.+++|++.++.    ..++.+..-|..+..-.     
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~Dv~~~g~~-----  107 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHRDVCEEGFD-----  107 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES-GGCG--S-----
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEecceeccccc-----
Confidence            6789999999999999999999986 3  5999999999999999999999875    35788888776532110     


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhc-cCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM-PLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL-~~~~~~~  248 (335)
                                     ......+|.|+.     |-+.....+..+.+.| ++||..+
T Consensus       108 ---------------~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~  143 (247)
T PF08704_consen  108 ---------------EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRIC  143 (247)
T ss_dssp             ---------------TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEE
T ss_pred             ---------------ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEE
Confidence                           011247898887     6677777788888899 7777665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.18  E-value=6.4e-06  Score=77.31  Aligned_cols=104  Identities=16%  Similarity=0.087  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++||+|=|=||-.|+.+++.|+ +|+..|.+..+++.+++|+.+|+..   ..++.+...|..+...          
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~----------  188 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLK----------  188 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHH----------
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHH----------
Confidence            5789999999999999999998875 8999999999999999999999853   3466776666443211          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc------ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~------~~~~~L~~tl~~lL~~~~  245 (335)
                                .....++||+||.=-.-|-.      ..+..|+..+.++++++|
T Consensus       189 ----------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG  232 (286)
T PF10672_consen  189 ----------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGG  232 (286)
T ss_dssp             ----------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEE
T ss_pred             ----------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence                      02234589999983222221      245678888888999877

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.17  E-value=1e-05  Score=78.82  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          121 GIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.+|||+.||+|..||.+++.  | .+|++.|.++.+++.+++|++.|+.     .++.+...|......          
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~----------  109 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLR----------  109 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHH----------
Confidence            468999999999999999987  3 6899999999999999999999973     345555554332210          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  ....+||+|.. |. |.  ...++++.+-+.++++|
T Consensus       110 ------------~~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~g  141 (374)
T TIGR00308       110 ------------YRNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERG  141 (374)
T ss_pred             ------------HhCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCC
Confidence                        01247999987 77 42  33467777777777665

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.16  E-value=3.4e-05  Score=70.08  Aligned_cols=122  Identities=7%  Similarity=0.012  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH-------ccCCCCCCCe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL-------NSGVFSHQGS  174 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~-------N~~~~~~~~~  174 (335)
                      .-.|.+|+...    ..-++.+||..|||.|.-.+.+|..|.+|++.|+++.+++.+.+....       +....-....
T Consensus        29 np~L~~~~~~l----~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~  104 (226)
T PRK13256         29 NEFLVKHFSKL----NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD  104 (226)
T ss_pred             CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence            44566666443    223678999999999999999999999999999999888877442110       1100001345


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEE--EeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLL--AADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIl--asDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      +.+...|+.+..+..                    ...++||+|+  ++=|-..++.-...++.+.++|++++..
T Consensus       105 i~~~~gD~f~l~~~~--------------------~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l  159 (226)
T PRK13256        105 IEIYVADIFNLPKIA--------------------NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI  159 (226)
T ss_pred             eEEEEccCcCCCccc--------------------cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence            677777766642110                    1235799966  4445556778888999999999998764

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.14  E-value=2.5e-05  Score=72.16  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.+.+..   ...++.+|||+|||+|..+..+++.+..|++.|.++.+++.++.+...       ..++.+...|..+
T Consensus        17 i~~~i~~~~---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~   86 (253)
T TIGR00755        17 VIQKIVEAA---NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALK   86 (253)
T ss_pred             HHHHHHHhc---CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhc
Confidence            344455442   345788999999999999999999998999999999999999887643       2457777777655


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        87 ~   87 (253)
T TIGR00755        87 V   87 (253)
T ss_pred             C
Confidence            4

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=4.6e-06  Score=69.75  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHcc
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      .++.|+.+++||||+|.++++++..+ ..|++.|++|++|+.+.+|++.-.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE   95 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE   95 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh
Confidence            67999999999999999998888775 589999999999999999987653

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.13  E-value=1.8e-05  Score=70.68  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH-HHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK-NVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~-Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +..-|||+|||+||.|-++...|..+++.|+++.||+.+.. -++  +         .....|.+...+-          
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e--g---------dlil~DMG~Glpf----------  108 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE--G---------DLILCDMGEGLPF----------  108 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh--c---------CeeeeecCCCCCC----------
Confidence            67789999999999999999999999999999999999875 222  1         2233444443221          


Q ss_pred             ccccccCcchhhccCCccEEEE---------eccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLA---------ADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIla---------sDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..+.||-+|+         ||--|+.+  -.-.|+.||..+|+++++.+
T Consensus       109 ------------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV  157 (270)
T KOG1541|consen  109 ------------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAV  157 (270)
T ss_pred             ------------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeE
Confidence                        2346776665         44444443  34567999999999988765

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.10  E-value=3.6e-05  Score=70.90  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+-++|||||+++|+.++.+|+.   ..+|+..|.+++..+.++.|++..+.    ..++.+...+..+..+....    
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e~L~~l~~----  149 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVLDQMIE----  149 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHHHHHHHHh----
Confidence            56789999999999999999875   46899999999999999999998764    35777777665443111000    


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  .....++||+|+.-   .+...+...++.+.++|++||
T Consensus       150 ------------~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GG  184 (247)
T PLN02589        150 ------------DGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGG  184 (247)
T ss_pred             ------------ccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCe
Confidence                        00012589999871   124556677788889999977

>PRK01581 speE spermidine synthase; Validated

Probab=98.09  E-value=1.7e-05  Score=76.51  Aligned_cols=102  Identities=20%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHH---HHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNV---QLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv---~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++||+||||+|.+...+.+..  .+|++.|+++++++.++..-   ..|..... ..++++...|-.+...      
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~-DpRV~vvi~Da~~fL~------  221 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFF-DNRVNVHVCDAKEFLS------  221 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCC-CCceEEEECcHHHHHH------
Confidence            356799999999998877777764  69999999999999999631   12221111 3456665544332110      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCc-------ccHHHHHHHHHHhccCCC
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSD-------DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-------~~~~~L~~tl~~lL~~~~  245 (335)
                                      ...++||+|+. |+ .++       -....+++.+++.|+++|
T Consensus       222 ----------------~~~~~YDVIIv-Dl-~DP~~~~~~~LyT~EFy~~~~~~LkPgG  262 (374)
T PRK01581        222 ----------------SPSSLYDVIII-DF-PDPATELLSTLYTSELFARIATFLTEDG  262 (374)
T ss_pred             ----------------hcCCCccEEEE-cC-CCccccchhhhhHHHHHHHHHHhcCCCc
Confidence                            12347999996 43 222       123668899999999988

>PRK03612 spermidine synthase; Provisional

Probab=98.05  E-value=2.6e-05  Score=79.44  Aligned_cols=103  Identities=20%  Similarity=0.172  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHH---ccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL---NSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~---N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      +.++||+||||+|.....+++..  .+|++.|+++++++.+++|...   |..... .+++++...|-.+..        
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-dprv~vi~~Da~~~l--------  367 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALD-DPRVTVVNDDAFNWL--------  367 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-CCceEEEEChHHHHH--------
Confidence            56899999999999998888774  6999999999999999986432   221111 345666555422210        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCc------ccHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ....++||+|+.. .-...      -....+++.++++|+++|.
T Consensus       368 --------------~~~~~~fDvIi~D-~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~  410 (521)
T PRK03612        368 --------------RKLAEKFDVIIVD-LPDPSNPALGKLYSVEFYRLLKRRLAPDGL  410 (521)
T ss_pred             --------------HhCCCCCCEEEEe-CCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence                          0113589999984 32211      1234688999999999883

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.03  E-value=1.3e-05  Score=72.52  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHH-HHHHHHcc-CCCC-----CCCe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNC-AKNVQLNS-GVFS-----HQGS  174 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~-~~Nv~~N~-~~~~-----~~~~  174 (335)
                      .-.|.+|+.+.    ..-.+.+||..|||.|.-.+.+|..|.+|++.|+++.+++.+ ++|-.... ....     ..++
T Consensus        23 ~p~L~~~~~~l----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~   98 (218)
T PF05724_consen   23 NPALVEYLDSL----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR   98 (218)
T ss_dssp             THHHHHHHHHH----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred             CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence            56788887763    335677999999999999999999999999999999888877 33322111 1110     1345


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE--eccccCcccHHHHHHHHHHhccCCCc
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA--ADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      |++...|+.+..+                      ...++||+|.=  +-|--.++.-...++.+.++|+++|.
T Consensus        99 i~~~~gDfF~l~~----------------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~  150 (218)
T PF05724_consen   99 ITIYCGDFFELPP----------------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR  150 (218)
T ss_dssp             EEEEES-TTTGGG----------------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred             eEEEEcccccCCh----------------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence            6777777666421                      12358999984  34445578899999999999999886

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02366 spermidine synthase

Probab=98.02  E-value=9.2e-05  Score=70.45  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.++||+||||.|.+...+++..  .+|++.|+++.+++.+++.+..-..... ..++++...|-......         
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~-dpRv~vi~~Da~~~l~~---------  160 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFD-DPRVNLHIGDGVEFLKN---------  160 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccC-CCceEEEEChHHHHHhh---------
Confidence            56899999999999888888873  6899999999999999998753211111 35677666552211000         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc--c---cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD--D---LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~---~~~~L~~tl~~lL~~~~  245 (335)
                                  ...++||+|+. |..-..  .   ....+++.++++|+++|
T Consensus       161 ------------~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgG  200 (308)
T PLN02366        161 ------------APEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGG  200 (308)
T ss_pred             ------------ccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence                        01247999997 432111  1   24568999999999988

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.91  E-value=2.1e-05  Score=71.15  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             eEEEEcCccCHHHHHHHHhC----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          123 ISLELGAGTGLAGILLSRVA----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~~----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +|||+|||.|-+...+.+-.    -.|++.|.+|.+++.++.|...+.      .++.+-..|...+...          
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~----------  137 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLK----------  137 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhcc----------
Confidence            79999999998888777762    479999999999999999887764      3333333333332100          


Q ss_pred             ccccccCcchhhccCCccEEEEecccc--CcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIY--SDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY--~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                               .....+.+|+|.+--|+-  +++.....++.+.++++|||..
T Consensus       138 ---------~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l  179 (264)
T KOG2361|consen  138 ---------EPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL  179 (264)
T ss_pred             ---------CCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence                     012346899998876663  3677888899999999998843

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.89  E-value=0.00011  Score=64.62  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      .+.|.++|||=||+|.+|+-++..| +.|++.|.+..++..+++|++.-+.    ..++.+...|
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~d  101 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL----EGEARVLRND  101 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeec
Confidence            4899999999999999999999885 6899999999999999999976543    2445554443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.86  E-value=2.6e-05  Score=68.01  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ....+-|||+|+|.+|+++|+.+.+|++.+.+|...+.+++|+..|+     ..++.+...|-.+-              
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y--------------   92 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDY--------------   92 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccc--------------
Confidence            34689999999999999999999999999999999999999998877     45677776654332              


Q ss_pred             cccccCcchhhccCCccEEEEe--ccccCcccHHHHHHHHHHhccCCCcc
Q 019839          200 ERYSWNSSELKEVQRASVLLAA--DVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlas--DviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 .....|+|+|-  |..--.+-.-+.++.+-.+|+..++.
T Consensus        93 -----------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~ti  131 (252)
T COG4076          93 -----------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTI  131 (252)
T ss_pred             -----------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcc
Confidence                       11367888772  32222333334455555577766543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=3.8e-05  Score=69.55  Aligned_cols=146  Identities=14%  Similarity=0.190  Sum_probs=86.1

Q ss_pred             CCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCC-------eeEEEeccCCCCC
Q 019839          116 SSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG-------SVHVRDLNWMNPW  186 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~-------~v~v~~ldW~~~~  186 (335)
                      .+.+.++.+||+||-+|.+++.+|+.  ...|++.|+++.++..++.|++.-........       .+....+.=....
T Consensus        54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            36789999999999999999999987  46899999999999999999865332111000       0000000000000


Q ss_pred             CCC---ccCCCCCccccccccCcch-h-hccCCccEEEEecccc------CcccHHHHHHHHHHhccCCCcceeeceEEE
Q 019839          187 PPI---FSLGNSSASQERYSWNSSE-L-KEVQRASVLLAADVIY------SDDLTDALFHTLKRLMPLGSKKVLVNMVLY  255 (335)
Q Consensus       187 ~~~---~~~~~~~~~~~~~~w~~~~-~-~~~~~fDlIlasDviY------~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~  255 (335)
                      +..   ....|-......+-....+ + .....||+|+|--+--      +++-.-.|++.|.++|.|||. .+++|.-+
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi-LvvEPQpW  212 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI-LVVEPQPW  212 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE-EEEcCCch
Confidence            000   0000000000111111111 1 1245899999976643      355677899999999999874 45777767


Q ss_pred             EEEeeec
Q 019839          256 LALEKRY  262 (335)
Q Consensus       256 ia~~~R~  262 (335)
                      =+|++|.
T Consensus       213 ksY~kaa  219 (288)
T KOG2899|consen  213 KSYKKAA  219 (288)
T ss_pred             HHHHHHH
Confidence            7776653

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.83  E-value=0.0001  Score=70.64  Aligned_cols=96  Identities=19%  Similarity=0.190  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..|.+|||+=||.|-.+|.+|+.|+. |++.|+||.+++.+++|+++|+.    ...+.....|-.+..+          
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~----------  252 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAP----------  252 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhh----------
Confidence            46999999999999999999999865 99999999999999999999986    3446666666444311          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                   ....+|-|+..    .+.....++.+..++++.++
T Consensus       253 -------------~~~~aDrIim~----~p~~a~~fl~~A~~~~k~~g  283 (341)
T COG2520         253 -------------ELGVADRIIMG----LPKSAHEFLPLALELLKDGG  283 (341)
T ss_pred             -------------ccccCCEEEeC----CCCcchhhHHHHHHHhhcCc
Confidence                         12579999886    34455566777777777765

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=0.00012  Score=72.71  Aligned_cols=127  Identities=16%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      +|.+|-.++-+..   ..-.++.++|+-||||+.|+++|+..++|++..++++.+.-++.|+..|+.     .++++...
T Consensus       367 ~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~g  438 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-----SNATFIVG  438 (534)
T ss_pred             HHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-----cceeeeec
Confidence            4778888888774   455678999999999999999999999999999999999999999999994     55666555


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK  260 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~  260 (335)
                      .-.+..+....                  ...+.-++|.-.|-=- ...+..+++.|...-.  .+..     +|+++..
T Consensus       439 qaE~~~~sl~~------------------~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~--~~rl-----vyvSCn~  492 (534)
T KOG2187|consen  439 QAEDLFPSLLT------------------PCCDSETLVAIIDPPR-KGLHMKVIKALRAYKN--PRRL-----VYVSCNP  492 (534)
T ss_pred             chhhccchhcc------------------cCCCCCceEEEECCCc-ccccHHHHHHHHhccC--ccce-----EEEEcCH
Confidence            22222111100                  0011334333322111 2456667777766654  3556     8999976


Q ss_pred             e
Q 019839          261 R  261 (335)
Q Consensus       261 R  261 (335)
                      +
T Consensus       493 ~  493 (534)
T KOG2187|consen  493 H  493 (534)
T ss_pred             H
Confidence            5

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.75  E-value=0.00029  Score=66.46  Aligned_cols=88  Identities=19%  Similarity=0.362  Sum_probs=49.8

Q ss_pred             CCeEEEEcCccC-HHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtG-L~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..++||+|+|.- +..|..++. +.++++||+++..++.++.|++.|..+   ..+|.++.-.=...   .+ .      
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~l~~~~~~~~---i~-~------  169 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL---ESRIELRKQKNPDN---IF-D------  169 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-S---ST-T------
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc---ccceEEEEcCCccc---cc-h------
Confidence            678999999965 667776665 889999999999999999999999333   46787765531111   00 0      


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCccc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDL  229 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~  229 (335)
                              ......+.||+.+|..-+|....
T Consensus       170 --------~i~~~~e~~dftmCNPPFy~s~~  192 (299)
T PF05971_consen  170 --------GIIQPNERFDFTMCNPPFYSSQE  192 (299)
T ss_dssp             --------TSTT--S-EEEEEE-----SS--
T ss_pred             --------hhhcccceeeEEecCCccccChh
Confidence                    00123358999999999998643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.67  E-value=0.0028  Score=57.80  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      -+..+++.++.=|.|+.++    ..+.|++||=|| =-=|+||++|..  .++|+..|+++.+++.+++.++..+     
T Consensus        22 Q~~~T~eT~~~Ra~~~~~~----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-----   91 (243)
T PF01861_consen   22 QGYATPETTLRRAALMAER----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-----   91 (243)
T ss_dssp             ---B-HHHHHHHHHHHHHT----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred             cccccHHHHHHHHHHHHhc----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-----
Confidence            4667778888888888886    678999999998 334888888876  4799999999999999999998876     


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeec
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVN  251 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~  251 (335)
                       -++++...|..+..|+.                     ..++||+++. |.-|-.+-...|+.---..|+..+. .   
T Consensus        92 -l~i~~~~~DlR~~LP~~---------------------~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~-~---  144 (243)
T PF01861_consen   92 -LPIEAVHYDLRDPLPEE---------------------LRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGC-A---  144 (243)
T ss_dssp             ---EEEE---TTS---TT---------------------TSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT--E---
T ss_pred             -CceEEEEecccccCCHH---------------------HhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCc-e---
Confidence             34899999998886643                     3469999885 7777777777777777777775442 4   


Q ss_pred             eEEEEEEeeec
Q 019839          252 MVLYLALEKRY  262 (335)
Q Consensus       252 p~i~ia~~~R~  262 (335)
                        .|+++..+.
T Consensus       145 --gy~~~~~~~  153 (243)
T PF01861_consen  145 --GYFGFTHKE  153 (243)
T ss_dssp             --EEEEE-TTT
T ss_pred             --EEEEEecCc
Confidence              788876654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PLN02823 spermine synthase

Probab=97.65  E-value=0.00029  Score=67.79  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++||.||+|.|.+...+.+.  ..+|++.|+++.+++.++++...+..... ..++++...|-.....          
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~-dprv~v~~~Da~~~L~----------  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC-DKRLELIINDARAELE----------  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc-CCceEEEEChhHHHHh----------
Confidence            4579999999999888877775  36899999999999999998876543221 3566666544222100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHH-HHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFH-TLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~-tl~~lL~~~~  245 (335)
                                  ...++||+|+. |+ .++.        ....+++ .++++|+++|
T Consensus       172 ------------~~~~~yDvIi~-D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~G  214 (336)
T PLN02823        172 ------------KRDEKFDVIIG-DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGG  214 (336)
T ss_pred             ------------hCCCCccEEEe-cC-CCccccCcchhhccHHHHHHHHHHhcCCCc
Confidence                        12358999995 43 2221        1445777 8999999988

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.60  E-value=8.4e-05  Score=64.08  Aligned_cols=60  Identities=15%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      +.|||+.||.|--.|.+|+.+.+|++.|+++.-++.++.|++.-+.    ..++.+...||.+.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~   60 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFEL   60 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHH
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHH
Confidence            3699999999999999999999999999999999999999998764    46899999999875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.57  E-value=0.0004  Score=61.18  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             eEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      +++|+|+|.|++||.+|..  ..+|++.|-...=+..++.-+..-+     ..++.+...+..+.               
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~---------------  110 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEEP---------------  110 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHHT---------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeeccc---------------
Confidence            7999999999999999988  4689999999866666655554433     24577766654441               


Q ss_pred             ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                               ....+||+|++-=    ....+.++.....+++++|
T Consensus       111 ---------~~~~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G  142 (184)
T PF02527_consen  111 ---------EYRESFDVVTARA----VAPLDKLLELARPLLKPGG  142 (184)
T ss_dssp             ---------TTTT-EEEEEEES----SSSHHHHHHHHGGGEEEEE
T ss_pred             ---------ccCCCccEEEeeh----hcCHHHHHHHHHHhcCCCC
Confidence                     1245899999953    3456778889999998877

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.57  E-value=0.00022  Score=59.40  Aligned_cols=58  Identities=17%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             eEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          123 ISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      +|||+|||+|..++.+++.+.  +|++.|.++.+.+.+++|++.|..     .++.+....+.+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeCC
Confidence            489999999999999998864  799999999999999999999873     4577776666554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.00058  Score=61.47  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +++++|+|+|.|++||.+|..  ..+|+..|-...=+..++.-...-+     ..++++....-.+...           
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~~~~-----------  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEEFGQ-----------  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhhccc-----------
Confidence            689999999999999999965  4569999998755555554443322     2345555444333211           


Q ss_pred             ccccccCcchhhccCC-ccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~-fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..+ ||+|.+-    -......++.....+++.+|..+
T Consensus       132 -------------~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         132 -------------EKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             -------------ccccCcEEEee----hccchHHHHHHHHHhcccCCcch
Confidence                         113 9999984    23556778889999999988644

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.48  E-value=0.00072  Score=62.37  Aligned_cols=86  Identities=21%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCC
Q 019839           93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQ  172 (335)
Q Consensus        93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~  172 (335)
                      +.|..+-..+.++...+...    ..-.+..|||+|-|||.....+...|++|++.+.++.|+..+++.++--..    .
T Consensus        35 d~GQHilkNp~v~~~I~~ka----~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~----~  106 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIVEKA----DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK----S  106 (315)
T ss_pred             ccchhhhcCHHHHHHHHhcc----CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc----c
Confidence            34555556666666555443    556778999999999999999999999999999999999999988753221    4


Q ss_pred             CeeEEEeccCCCCC
Q 019839          173 GSVHVRDLNWMNPW  186 (335)
Q Consensus       173 ~~v~v~~ldW~~~~  186 (335)
                      +..++...|.....
T Consensus       107 ~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen  107 GKLQVLHGDFLKTD  120 (315)
T ss_pred             ceeeEEecccccCC
Confidence            67888888877653

>PRK00536 speE spermidine synthase; Provisional

Probab=97.39  E-value=0.0019  Score=60.08  Aligned_cols=94  Identities=11%  Similarity=-0.047  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ..++||=+|.|-|.+.--+.|...+|++.|+++++++.+++-+-....... .+++.+..  |...              
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~--~~~~--------------  134 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK--QLLD--------------  134 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee--hhhh--------------
Confidence            458999999999999999999877999999999999999974322111111 35555543  2211              


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                ...++||+|| .|..|.    ..+.+.+++.|+++|
T Consensus       135 ----------~~~~~fDVII-vDs~~~----~~fy~~~~~~L~~~G  165 (262)
T PRK00536        135 ----------LDIKKYDLII-CLQEPD----IHKIDGLKRMLKEDG  165 (262)
T ss_pred             ----------ccCCcCCEEE-EcCCCC----hHHHHHHHHhcCCCc
Confidence                      0124899999 566654    567788999999988

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.25  E-value=0.00085  Score=65.51  Aligned_cols=110  Identities=20%  Similarity=0.231  Sum_probs=75.7

Q ss_pred             eEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccc
Q 019839          123 ISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER  201 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~  201 (335)
                      -||++|+||||+|+.+++.|+ .|++.+.=.-|.+.+++-+..|+.    ..++.+..-.=.+.              + 
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev--------------~-  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEV--------------K-  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC----ccceeeecccccee--------------e-
Confidence            699999999999999999975 799999887889999888888875    34555543211110              0 


Q ss_pred             cccCcchhhccCCccEEEEeccccC---cccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          202 YSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       202 ~~w~~~~~~~~~~fDlIlasDviY~---~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                             .....+.|++++.|..-.   ......+-....+|+.++++.+....++|+-.
T Consensus       130 -------vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~ql  182 (636)
T KOG1501|consen  130 -------VGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQL  182 (636)
T ss_pred             -------ecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEE
Confidence                   000124677766554322   23566777888899999998876666677654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.24  E-value=0.0027  Score=61.09  Aligned_cols=128  Identities=9%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC-CC---
Q 019839           99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH-QG---  173 (335)
Q Consensus        99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~-~~---  173 (335)
                      |=-+.++..|+....   ...++.+|||||||-|- +.=........++++|++...++.++............ ..   
T Consensus        44 wvKs~LI~~~~~~~~---~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~  120 (331)
T PF03291_consen   44 WVKSVLIQKYAKKVK---QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD  120 (331)
T ss_dssp             HHHHHHHHHHCHCCC---CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred             HHHHHHHHHHHHhhh---ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence            667888888875332   22378899999999774 22222222479999999999999998877321111000 11   


Q ss_pred             -eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCc
Q 019839          174 -SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       174 -~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~  246 (335)
                       ...+...|-....           ....+      .....+||+|=+--++|+-    +....+++.+..+|++||.
T Consensus       121 f~a~f~~~D~f~~~-----------l~~~~------~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~  181 (331)
T PF03291_consen  121 FIAEFIAADCFSES-----------LREKL------PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGY  181 (331)
T ss_dssp             CEEEEEESTTCCSH-----------HHCTS------SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             chhheeccccccch-----------hhhhc------cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCE
Confidence             1222333222110           00000      0113589999998888773    5677799999999999884

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.24  E-value=0.0034  Score=58.29  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ..-+++.|.+..   ..-++..|||+|+|+|..+-.++..+++|++.+.++.+.+.++.....       ..++.+...|
T Consensus        15 ~~~~~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D   84 (262)
T PF00398_consen   15 DPNIADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGD   84 (262)
T ss_dssp             HHHHHHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-
T ss_pred             CHHHHHHHHHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------cccceeeecc
Confidence            344566666654   334889999999999999999999999999999999999999887652       3678888888


Q ss_pred             CCCC
Q 019839          182 WMNP  185 (335)
Q Consensus       182 W~~~  185 (335)
                      ..+.
T Consensus        85 ~l~~   88 (262)
T PF00398_consen   85 FLKW   88 (262)
T ss_dssp             TTTS
T ss_pred             hhcc
Confidence            6654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.21  E-value=0.0025  Score=64.06  Aligned_cols=108  Identities=9%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      -+|.+|||++||.|-=+..+|..   ...|++.|+++.-++.++.|+++-+     ..++.+...|-.....        
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~--------  178 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGA--------  178 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhh--------
Confidence            47889999999999777777665   2589999999999999999999866     2455555544221100        


Q ss_pred             CccccccccCcchhhccCCccEEEE----e---------ccccC---------cccHHHHHHHHHHhccCCCcceeeceE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLA----A---------DVIYS---------DDLTDALFHTLKRLMPLGSKKVLVNMV  253 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIla----s---------DviY~---------~~~~~~L~~tl~~lL~~~~~~~~~~p~  253 (335)
                                    .....||.||.    |         |+.+.         ......++....++|++||. +     
T Consensus       179 --------------~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~-L-----  238 (470)
T PRK11933        179 --------------ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT-L-----  238 (470)
T ss_pred             --------------hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE-E-----
Confidence                          01236888883    3         12221         12235677888889999874 3     


Q ss_pred             EEEEEe
Q 019839          254 LYLALE  259 (335)
Q Consensus       254 i~ia~~  259 (335)
                      +|..|.
T Consensus       239 VYSTCT  244 (470)
T PRK11933        239 VYSTCT  244 (470)
T ss_pred             EEECCC
Confidence            677664

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.19  E-value=0.0011  Score=59.39  Aligned_cols=108  Identities=15%  Similarity=0.065  Sum_probs=59.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccC----CCCCCCeeEEEeccCCCCCCCCc
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSG----VFSHQGSVHVRDLNWMNPWPPIF  190 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~----~~~~~~~v~v~~ldW~~~~~~~~  190 (335)
                      ..-++...+|||||.|-+-+.+|..  ..++++.++.+...+.++.+.+....    ......++.....|+.+...   
T Consensus        39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~---  115 (205)
T PF08123_consen   39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF---  115 (205)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH---
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh---
Confidence            3456789999999999877777655  35799999998777666554432211    00013556666666554310   


Q ss_pred             cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                    .   .......|+|++...+|++++...|.+.+ .-|++|.
T Consensus       116 --------------~---~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~-~~lk~G~  152 (205)
T PF08123_consen  116 --------------V---KDIWSDADVVFVNNTCFDPDLNLALAELL-LELKPGA  152 (205)
T ss_dssp             --------------H---HHHGHC-SEEEE--TTT-HHHHHHHHHHH-TTS-TT-
T ss_pred             --------------H---hhhhcCCCEEEEeccccCHHHHHHHHHHH-hcCCCCC
Confidence                          0   00124689999999999998888875444 4456654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0026  Score=58.87  Aligned_cols=70  Identities=16%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .+.|....   ...++.+|||+|+|.|.+...+++.+++|++.++++.+++.++.....       ..++.+...|....
T Consensus        19 ~~kIv~~a---~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk~   88 (259)
T COG0030          19 IDKIVEAA---NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHhc---CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhcC
Confidence            55555553   444588999999999999999999999999999999999999877651       35677777665554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.16  E-value=0.0026  Score=59.55  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      +.|+.++|||+|||+|....++...   -.++++.|.++.|++..+.-+. +...      .  ....|.......    
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~------~--~~~~~~~~~~~~----   96 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPN------N--RNAEWRRVLYRD----   96 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccc------c--ccchhhhhhhcc----
Confidence            4688899999999999766555543   3589999999999987776443 2211      0  011121110000    


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhc
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM  241 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL  241 (335)
                                     .......|+||++.++-.-.. ....+.+..+-
T Consensus        97 ---------------~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW  128 (274)
T PF09243_consen   97 ---------------FLPFPPDDLVIASYVLNELPS-AARAELVRSLW  128 (274)
T ss_pred             ---------------cccCCCCcEEEEehhhhcCCc-hHHHHHHHHHH
Confidence                           011224499999999988666 55666666663

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.15  E-value=0.0046  Score=65.35  Aligned_cols=76  Identities=14%  Similarity=0.064  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC---------------------------------------
Q 019839          103 LVLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA---------------------------------------  142 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~la~~~---------------------------------------  142 (335)
                      ..||.-|+...   .. -.+..++|-+||+|.+.|.+|..+                                       
T Consensus       175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            35666555542   22 257899999999999999887641                                       


Q ss_pred             -----CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          143 -----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       143 -----~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                           .+|+++|+++.+++.++.|+..++.    ...+.+...|+.+.
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~  295 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADL  295 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhc
Confidence                 2699999999999999999999875    34578888887764

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.15  E-value=0.0025  Score=55.83  Aligned_cols=100  Identities=11%  Similarity=0.038  Sum_probs=65.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCE-----------EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWT-----------VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~-----------V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..-+|..|||-=||+|-+-|.+|..+..           +++.|+++.++..++.|+...+.    ...+.+...|..+.
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----~~~i~~~~~D~~~l  100 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----EDYIDFIQWDAREL  100 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGGG
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc----CCceEEEecchhhc
Confidence            3346789999999999999998888533           67999999999999999987653    34566666665543


Q ss_pred             CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------ccHHHHHHHHHHhccC
Q 019839          186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPL  243 (335)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------~~~~~L~~tl~~lL~~  243 (335)
                      .                       ...+.+|+||+.--.-..        .+...+++.+.+++++
T Consensus       101 ~-----------------------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen  101 P-----------------------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             G-----------------------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             c-----------------------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            1                       023478988874443321        2345567777777765

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.13  E-value=0.0054  Score=57.18  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhhcCC-CCCCCCCeEEEEcCccC--HHHHHHH--HhC-------CEEEEecCchHHHHHHHH------HHH
Q 019839          102 ELVLADFVMHKMCT-SSDFNGIISLELGAGTG--LAGILLS--RVA-------WTVFLTDHGNYILDNCAK------NVQ  163 (335)
Q Consensus       102 a~~La~~l~~~~~~-~~~~~g~~VLELG~GtG--L~gl~la--~~~-------~~V~~TD~~~~~l~~~~~------Nv~  163 (335)
                      -..|.+.+...+.. ... +..+|+-.||+||  --||+++  ...       .+|++||++..+|+.++.      +..
T Consensus        78 f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~  156 (268)
T COG1352          78 FEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELL  156 (268)
T ss_pred             HHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhh
Confidence            34566666543210 011 4569999999999  4444444  332       379999999999998873      322


Q ss_pred             HccCCC--------CC----------CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccc-
Q 019839          164 LNSGVF--------SH----------QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVI-  224 (335)
Q Consensus       164 ~N~~~~--------~~----------~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDvi-  224 (335)
                      .|-...        ..          ...|.++.++...+.+                       ..+.||+|+|-+|+ 
T Consensus       157 ~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-----------------------~~~~fD~IfCRNVLI  213 (268)
T COG1352         157 RGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-----------------------FLGKFDLIFCRNVLI  213 (268)
T ss_pred             ccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-----------------------ccCCCCEEEEcceEE
Confidence            221100        00          1234444444444321                       23579999999988 


Q ss_pred             c-CcccHHHHHHHHHHhccCCC
Q 019839          225 Y-SDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       225 Y-~~~~~~~L~~tl~~lL~~~~  245 (335)
                      | +.+....++..+...|++||
T Consensus       214 YFd~~~q~~il~~f~~~L~~gG  235 (268)
T COG1352         214 YFDEETQERILRRFADSLKPGG  235 (268)
T ss_pred             eeCHHHHHHHHHHHHHHhCCCC
Confidence            3 35677889999999999988

>PHA01634 hypothetical protein

Probab=97.09  E-value=0.0029  Score=52.02  Aligned_cols=51  Identities=8%  Similarity=-0.043  Sum_probs=46.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      ..+++++|+++||+.|-.+|..+..| +.|++...++.+.+.++.|++.|..
T Consensus        25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            45899999999999999999999886 5899999999999999999999863

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.08  E-value=0.00076  Score=60.06  Aligned_cols=103  Identities=16%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCccC--HHHHHH--HHh----C---CEEEEecCchHHHHHHHHHH-HHccCCCC-----------------
Q 019839          120 NGIISLELGAGTG--LAGILL--SRV----A---WTVFLTDHGNYILDNCAKNV-QLNSGVFS-----------------  170 (335)
Q Consensus       120 ~g~~VLELG~GtG--L~gl~l--a~~----~---~~V~~TD~~~~~l~~~~~Nv-~~N~~~~~-----------------  170 (335)
                      +..+|+-.||+||  .-||++  ...    .   .+|++||+++.+|+.+++=+ ..+.....                 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4468999999999  444443  331    1   38999999999998887321 00100000                 


Q ss_pred             ---C--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccC
Q 019839          171 ---H--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPL  243 (335)
Q Consensus       171 ---~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~  243 (335)
                         +  ...|.+..++..+..                       ...++||+|+|-+|+.+  .+....+++.+.+.|+|
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~-----------------------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p  167 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPD-----------------------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP  167 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-----------------------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred             eEChHHcCceEEEecccCCCC-----------------------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence               0  234566666655511                       13458999999999843  56778899999999999


Q ss_pred             CC
Q 019839          244 GS  245 (335)
Q Consensus       244 ~~  245 (335)
                      ||
T Consensus       168 gG  169 (196)
T PF01739_consen  168 GG  169 (196)
T ss_dssp             EE
T ss_pred             CC
Confidence            87

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.04  E-value=0.0018  Score=61.01  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             CCeEEEEcCccC--HHHHHHH--Hh------CCEEEEecCchHHHHHHHHHHH-----HccC------------------
Q 019839          121 GIISLELGAGTG--LAGILLS--RV------AWTVFLTDHGNYILDNCAKNVQ-----LNSG------------------  167 (335)
Q Consensus       121 g~~VLELG~GtG--L~gl~la--~~------~~~V~~TD~~~~~l~~~~~Nv~-----~N~~------------------  167 (335)
                      ..+|+-.||.||  .-+|++.  ..      ..+|++||+++.+|+.++.-+=     .+-.                  
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999  4444443  32      1379999999999999885430     0000                  


Q ss_pred             -CCCC--CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhcc
Q 019839          168 -VFSH--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMP  242 (335)
Q Consensus       168 -~~~~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~  242 (335)
                       .+..  ...|.+..+|..+..                      ....++||+|+|-+|+.+  .+....+++.+.+.|+
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~----------------------~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~  253 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQ----------------------WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK  253 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCC----------------------CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC
Confidence             0000  123344444433310                      011358999999888844  4678899999999999


Q ss_pred             CCC
Q 019839          243 LGS  245 (335)
Q Consensus       243 ~~~  245 (335)
                      |||
T Consensus       254 pgG  256 (287)
T PRK10611        254 PDG  256 (287)
T ss_pred             CCc
Confidence            988

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.03  E-value=0.0053  Score=55.17  Aligned_cols=135  Identities=16%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCccCHHHH-HHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGI-LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl-~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..-.++||.|||.|-++- .+.+...+|-+.|..+..++.++..+..+..     ....+...-..+.            
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f------------  116 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDF------------  116 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG-------------
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhc------------
Confidence            345799999999998874 5566788999999999999999876544221     1122222211111            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhh
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANG  275 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~  275 (335)
                             .    +...+||+|..-=|+=|  +++.-.+++-++..|+++|-.++-+ .  ++......|-.+|- .+...
T Consensus       117 -------~----P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE-N--~~~~~~~~~D~~Ds-SvTRs  181 (218)
T PF05891_consen  117 -------T----PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE-N--VSSSGFDEFDEEDS-SVTRS  181 (218)
T ss_dssp             --------------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE-E--EESSSEEEEETTTT-EEEEE
T ss_pred             -------c----CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe-c--CCCCCCcccCCccC-eeecC
Confidence                   1    12358999999777655  4566778899999999876222111 0  01100111111222 24577


Q ss_pred             hhHHHHHHhh
Q 019839          276 YSHFRSYIME  285 (335)
Q Consensus       276 ~~~f~~~l~~  285 (335)
                      ..+|++.+..
T Consensus       182 ~~~~~~lF~~  191 (218)
T PF05891_consen  182 DEHFRELFKQ  191 (218)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8899998864

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.94  E-value=0.0052  Score=58.23  Aligned_cols=119  Identities=11%  Similarity=0.095  Sum_probs=71.1

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHH---------hCCEEEEecCchHHHHHHHHHHHHccCCCCCCC
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR---------VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG  173 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~---------~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~  173 (335)
                      ..++++|....   ....+.+|+|-.||+|-.-+.+.+         ...++++.|+++.++..++.|+..++..   ..
T Consensus        32 ~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~  105 (311)
T PF02384_consen   32 REIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NS  105 (311)
T ss_dssp             HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CB
T ss_pred             HHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---cc
Confidence            34555555543   345677999999999987777765         2468999999999999999998776532   12


Q ss_pred             eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc---------------------ccHHH
Q 019839          174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---------------------DLTDA  232 (335)
Q Consensus       174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------------------~~~~~  232 (335)
                      ...+...|......                     .....+||+||+.-.+-..                     ...-+
T Consensus       106 ~~~i~~~d~l~~~~---------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (311)
T PF02384_consen  106 NINIIQGDSLENDK---------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYA  164 (311)
T ss_dssp             GCEEEES-TTTSHS---------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHH
T ss_pred             cccccccccccccc---------------------cccccccccccCCCCccccccccccccccccccccCCCccchhhh
Confidence            23445544433211                     0013578888885433211                     11224


Q ss_pred             HHHHHHHhccCCCcce
Q 019839          233 LFHTLKRLMPLGSKKV  248 (335)
Q Consensus       233 L~~tl~~lL~~~~~~~  248 (335)
                      ++..+-+.|+++|+..
T Consensus       165 Fi~~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  165 FIEHALSLLKPGGRAA  180 (311)
T ss_dssp             HHHHHHHTEEEEEEEE
T ss_pred             hHHHHHhhccccccee
Confidence            6777778888887665

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.93  E-value=0.0052  Score=52.96  Aligned_cols=121  Identities=15%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             CccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839           93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus        93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      .+|. +-+++-.||+-|.+..   ..-.|+-|||||.|||...=++.+.|   ..+++.+++++-...+.+..       
T Consensus        25 tVGa-I~PsSs~lA~~M~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------   93 (194)
T COG3963          25 TVGA-ILPSSSILARKMASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------   93 (194)
T ss_pred             eeee-ecCCcHHHHHHHHhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence            3453 3467777888887764   44578899999999999888777775   47999999998887775442       


Q ss_pred             CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCC
Q 019839          170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~  245 (335)
                         ..+.+.+.|-.+.....                  ..-....||.||++=-+-+.+  ..-++++.+...+..|+
T Consensus        94 ---p~~~ii~gda~~l~~~l------------------~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg  150 (194)
T COG3963          94 ---PGVNIINGDAFDLRTTL------------------GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG  150 (194)
T ss_pred             ---CCccccccchhhHHHHH------------------hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence               22223333322110000                  001245799999987776654  34556777777777755

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.93  E-value=0.0013  Score=59.47  Aligned_cols=131  Identities=13%  Similarity=0.158  Sum_probs=84.5

Q ss_pred             CCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCC
Q 019839           91 IPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus        91 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      +.+.+.--|..++.=+..+       ..-+|.+|||-..|.|.++|.+++.|+ +|+-.+.+|.+|++++-|=    ...
T Consensus       112 hrt~~tdP~~Dt~~Kv~~V-------~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP----wSr  180 (287)
T COG2521         112 HRTKGTDPLEDTLAKVELV-------KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP----WSR  180 (287)
T ss_pred             ecccCcCcHHHHHhhhhee-------ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC----CCc
Confidence            3445555565554333322       234799999999999999999999998 9999999999998887552    111


Q ss_pred             CC-CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHh
Q 019839          170 SH-QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRL  240 (335)
Q Consensus       170 ~~-~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~l  240 (335)
                      +. ...+.+...|-.+..             +.+        .+..||+||-     +++        ..+.|.+.+.++
T Consensus       181 ~l~~~~i~iilGD~~e~V-------------~~~--------~D~sfDaIiH-----DPPRfS~AgeLYseefY~El~Ri  234 (287)
T COG2521         181 ELFEIAIKIILGDAYEVV-------------KDF--------DDESFDAIIH-----DPPRFSLAGELYSEEFYRELYRI  234 (287)
T ss_pred             cccccccEEecccHHHHH-------------hcC--------CccccceEee-----CCCccchhhhHhHHHHHHHHHHH
Confidence            00 123344333322211             111        2457999874     433        356788999999


Q ss_pred             ccCCCcceeeceEEEEEEee-ecc
Q 019839          241 MPLGSKKVLVNMVLYLALEK-RYN  263 (335)
Q Consensus       241 L~~~~~~~~~~p~i~ia~~~-R~~  263 (335)
                      |+++|+..     =|+...- ||.
T Consensus       235 LkrgGrlF-----HYvG~Pg~ryr  253 (287)
T COG2521         235 LKRGGRLF-----HYVGNPGKRYR  253 (287)
T ss_pred             cCcCCcEE-----EEeCCCCcccc
Confidence            99999876     6776554 443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0086  Score=53.43  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHc
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      .|..+--+|..+-.++++.+. ..+.+|.+.|++|+|+|.++-.++++    |..+++.|..+++++..++|+..-
T Consensus        57 ~G~n~~iSAp~mha~~le~L~-~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   57 IGYNLTISAPHMHATALEYLD-DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             cCCceEEcchHHHHHHHHHHH-HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            343333355555444444320 12578999999999999888888865    345699999999999999999764

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.90  E-value=0.00038  Score=61.74  Aligned_cols=94  Identities=17%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ..+++||||||-|=+++.++..-.+|++|+.+..|.+.+++.   |-        -....++|.+.              
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~y--------nVl~~~ew~~t--------------  166 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---NY--------NVLTEIEWLQT--------------  166 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---CC--------ceeeehhhhhc--------------
Confidence            348999999999999999988877899999998888777532   11        12245677664              


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~  250 (335)
                                  .-++|+|.|-.++=.-...-.|++-|...++|....+|+
T Consensus       167 ------------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  167 ------------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             ------------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence                        238999999888877777788999999999995544433

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.83  E-value=0.0047  Score=52.95  Aligned_cols=78  Identities=9%  Similarity=-0.061  Sum_probs=56.8

Q ss_pred             EEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc
Q 019839          146 FLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY  225 (335)
Q Consensus       146 ~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY  225 (335)
                      ++.|.+++||+.++++........  ..++.+...|-.+..                       ...+.||+|+++.++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~--~~~i~~~~~d~~~lp-----------------------~~~~~fD~v~~~~~l~   55 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSC--YKCIEWIEGDAIDLP-----------------------FDDCEFDAVTMGYGLR   55 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccC--CCceEEEEechhhCC-----------------------CCCCCeeEEEecchhh
Confidence            378999999999987764322100  235666666544321                       1234899999999999


Q ss_pred             CcccHHHHHHHHHHhccCCCcce
Q 019839          226 SDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       226 ~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +......+++.+.++|+|||..+
T Consensus        56 ~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232         56 NVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             cCCCHHHHHHHHHHHcCcCeEEE
Confidence            98889999999999999998654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.82  E-value=0.0091  Score=53.07  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ..+||||||.|-.-+.+|+.  ...+++.|+....+..+...+...+     ..++.+...|-......           
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~-----------   82 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRR-----------   82 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHH-----------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhh-----------
Confidence            38999999999888888877  5799999999988888888887765     46788887765442110           


Q ss_pred             cccccCcchhhccCCccEEEE--eccccCcc------cHHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLA--ADVIYSDD------LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIla--sDviY~~~------~~~~L~~tl~~lL~~~~  245 (335)
                               ....+.+|-|..  .|--....      ....+++.+.++|++||
T Consensus        83 ---------~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG  127 (195)
T PF02390_consen   83 ---------LFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGG  127 (195)
T ss_dssp             ---------HSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred             ---------cccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence                     111235555443  22211111      46889999999999987

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.75  E-value=0.0049  Score=51.68  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHH-----h-CCEEEEecCchHHHHHHHHHHHHcc
Q 019839          119 FNGIISLELGAGTGLAGILLSR-----V-AWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~-----~-~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      -+..+|+|+|||-|.+|.+++.     . +.+|++.|.++..++.+.+..+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            5678999999999999999998     3 6799999999988888877765543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.72  E-value=0.012  Score=56.53  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE-EeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV-RDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v-~~ldW~  183 (335)
                      ||+.+...   ....+|..|||==||||-.-+.+...|.+|+++|++..|+.-++.|++.-+.     ....+ ..+|-.
T Consensus       185 lAR~mVNL---a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~~~~Da~  256 (347)
T COG1041         185 LARAMVNL---ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI-----EDYPVLKVLDAT  256 (347)
T ss_pred             HHHHHHHH---hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc-----CceeEEEecccc
Confidence            45544433   3567899999999999999999999999999999999999999999987642     11111 111222


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----------ccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----------DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----------~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +..-                       ....+|-|+. |.-|-.          ++...+++++.+.|+++|..+
T Consensus       257 ~lpl-----------------------~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v  307 (347)
T COG1041         257 NLPL-----------------------RDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV  307 (347)
T ss_pred             cCCC-----------------------CCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence            1100                       0113666553 444432          457788999999999977544

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.70  E-value=0.0072  Score=61.70  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC----------CEEEEecCchHHHHHHHHHHHHcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA----------WTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~----------~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      .+.+|||.|||+|...+.++...          .++++.|+++.++..++.|+....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            55799999999998888777642          478999999999999999987654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.69  E-value=0.011  Score=54.58  Aligned_cols=103  Identities=14%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.++||-||-|.|.+.-.+.+..  .+|++.|+++.+++.+++-......... .+++++..-|=....           
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~-d~r~~i~~~Dg~~~l-----------  143 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD-DPRVRIIIGDGRKFL-----------  143 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG-STTEEEEESTHHHHH-----------
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC-CCceEEEEhhhHHHH-----------
Confidence            67899999999998888877774  7999999999999999987665432111 355666544411110           


Q ss_pred             cccccccCcchhhccC-CccEEEE--eccccCc--ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQ-RASVLLA--ADVIYSD--DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~-~fDlIla--sDviY~~--~~~~~L~~tl~~lL~~~~  245 (335)
                                 ....+ +||+|+.  .|-....  -....+++.+++.|+++|
T Consensus       144 -----------~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~G  185 (246)
T PF01564_consen  144 -----------KETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDG  185 (246)
T ss_dssp             -----------HTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred             -----------HhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCc
Confidence                       01123 8999997  2211111  135789999999999987

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.60  E-value=0.013  Score=56.32  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             ehhHHHHHHHHHhhcC----CCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839           99 WKAELVLADFVMHKMC----TSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS  174 (335)
Q Consensus        99 W~aa~~La~~l~~~~~----~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~  174 (335)
                      =++++-|.+.+.....    .....+|++||||||++|--+-.+.+.|.+|++.|.++ +    ..++..       .++
T Consensus       186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l----~~~L~~-------~~~  253 (357)
T PRK11760        186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M----AQSLMD-------TGQ  253 (357)
T ss_pred             ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c----CHhhhC-------CCC
Confidence            4667777776554320    01246899999999999999999999999999999763 2    233322       244


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCC
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG  244 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~  244 (335)
                      |.....+=....+                       ..+.+|+|++ |++-.+.   .+.+.+.+.+..+
T Consensus       254 V~h~~~d~fr~~p-----------------------~~~~vDwvVc-Dmve~P~---rva~lm~~Wl~~g  296 (357)
T PRK11760        254 VEHLRADGFKFRP-----------------------PRKNVDWLVC-DMVEKPA---RVAELMAQWLVNG  296 (357)
T ss_pred             EEEEeccCcccCC-----------------------CCCCCCEEEE-ecccCHH---HHHHHHHHHHhcC
Confidence            5554443221111                       1347898886 5554443   5566666777654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.58  E-value=0.012  Score=52.84  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             EEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          124 SLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       124 VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      |.|+||--|.+++.+.+.|.  +|+++|+++.-++.++.|+..++.    ..++.++..|
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgd   56 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGD   56 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-S
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECC
Confidence            68999999999999999975  899999999999999999998775    4567777665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.44  E-value=0.19  Score=45.41  Aligned_cols=165  Identities=19%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             CccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCC
Q 019839           93 SVGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGV  168 (335)
Q Consensus        93 ~~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~  168 (335)
                      ..+.++|+.- --||..|+.....-...+|.+||=|||.+|.+=--++.. |  ..|++.+.++.....+- ++...   
T Consensus        45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~-~la~~---  120 (229)
T PF01269_consen   45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL-NLAKK---  120 (229)
T ss_dssp             -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHH---
T ss_pred             ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH-HHhcc---
Confidence            4588999862 234444443332224567999999999999655555544 3  48999999996554443 22221   


Q ss_pred             CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                         ..|+-..--|-..+              ..|.      ...+.+|+|++ ||- .+++.+-++...+.+|+++|.  
T Consensus       121 ---R~NIiPIl~DAr~P--------------~~Y~------~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~--  173 (229)
T PF01269_consen  121 ---RPNIIPILEDARHP--------------EKYR------MLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGH--  173 (229)
T ss_dssp             ---STTEEEEES-TTSG--------------GGGT------TTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEE--
T ss_pred             ---CCceeeeeccCCCh--------------HHhh------cccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcE--
Confidence               23343333232211              1111      12347777775 444 457888889999999999874  


Q ss_pred             eeceEEEEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeee-EEecCC
Q 019839          249 LVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVG-KCIDLN  308 (335)
Q Consensus       249 ~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v-~~i~~~  308 (335)
                           ++++.+-|..      |++++.-.-|........         ..+|.+ +++.+.
T Consensus       174 -----~~i~iKa~si------D~t~~p~~vf~~e~~~L~---------~~~~~~~e~i~Le  214 (229)
T PF01269_consen  174 -----LIISIKARSI------DSTADPEEVFAEEVKKLK---------EEGFKPLEQITLE  214 (229)
T ss_dssp             -----EEEEEEHHHH-------SSSSHHHHHHHHHHHHH---------CTTCEEEEEEE-T
T ss_pred             -----EEEEEecCcc------cCcCCHHHHHHHHHHHHH---------HcCCChheEeccC
Confidence                 5666666644      444444455666554322         124655 556664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=96.42  E-value=0.012  Score=53.99  Aligned_cols=48  Identities=13%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             CCCCC--eEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839          118 DFNGI--ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       118 ~~~g~--~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      .-+|.  +|||+=||+|.-|+.+|..|++|++.+.++.+..+++.|++.-
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra  133 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARG  133 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh
Confidence            34555  8999999999999999999999999999999999999999873

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.40  E-value=0.0025  Score=57.60  Aligned_cols=96  Identities=7%  Similarity=0.051  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ....+++||||.|.++-.+-..+ .+++.+|.+-.|++.++..-         .+.+.+..+--.++..+          
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---------dp~i~~~~~v~DEE~Ld----------  132 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---------DPSIETSYFVGDEEFLD----------  132 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---------CCceEEEEEecchhccc----------
Confidence            34689999999998887766665 58999999999998886421         12233322221111000          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                 -...++|+||.|--+|+..+.+.-+..++..++|.|
T Consensus       133 -----------f~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg  168 (325)
T KOG2940|consen  133 -----------FKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDG  168 (325)
T ss_pred             -----------ccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCc
Confidence                       023489999999999999988888999999999987

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.32  E-value=0.019  Score=54.46  Aligned_cols=121  Identities=11%  Similarity=0.117  Sum_probs=75.7

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCC-CCCee
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSV  175 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-~~~~v  175 (335)
                      =|=-+.++-.|.         -++..+++||||-|-=-+-.-+.| ..++++|+.+-.++.|+...+.-..... ..-.+
T Consensus       104 NwIKs~LI~~y~---------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a  174 (389)
T KOG1975|consen  104 NWIKSVLINLYT---------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA  174 (389)
T ss_pred             HHHHHHHHHHHh---------ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence            466666666665         466789999999985555555554 5899999999889999866643211100 01123


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhh-ccCCccEEEEeccccC----cccHHHHHHHHHHhccCCC
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELK-EVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~  245 (335)
                      .+...|-.....           ...       ++ ...+||+|=+--++|+    .+..+-++..+.+.|+|||
T Consensus       175 ~f~~~Dc~~~~l-----------~d~-------~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG  231 (389)
T KOG1975|consen  175 VFIAADCFKERL-----------MDL-------LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG  231 (389)
T ss_pred             EEEEeccchhHH-----------HHh-------ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence            333333222100           000       11 1234999988888866    3567788999999999998

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.24  E-value=0.019  Score=54.32  Aligned_cols=46  Identities=9%  Similarity=-0.044  Sum_probs=40.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHH
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      -+|..+||.+||.|--+..+++..   .+|++.|.++++++.++.++..
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            467799999999999999888873   6899999999999999887643

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.036  Score=52.11  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++||-||-|.|-+.-.+.+..  .++++.|+++.+++.+++=+..-..... .+++.+..-|=.+.              
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~--------------  142 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEF--------------  142 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHH--------------
Confidence            699999999999999998885  7999999999999999876543221111 24444443331111              


Q ss_pred             cccccCcchhh-ccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELK-EVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~-~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~  245 (335)
                               +. ...+||+||. |+.=...     ....+++.++++|+++|
T Consensus       143 ---------v~~~~~~fDvIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~G  184 (282)
T COG0421         143 ---------LRDCEEKFDVIIV-DSTDPVGPAEALFTEEFYEGCRRALKEDG  184 (282)
T ss_pred             ---------HHhCCCcCCEEEE-cCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence                     11 1237999997 2211111     25789999999999988

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.17  E-value=0.058  Score=49.15  Aligned_cols=55  Identities=24%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCch
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGN  152 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~  152 (335)
                      ..-+-++++-|...+.+.   .-.++|+.|||+||-||-..-++...| ++|++.|.+-
T Consensus        57 ~~yVSRG~~KL~~ale~F---~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~  112 (245)
T COG1189          57 QPYVSRGGLKLEKALEEF---ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY  112 (245)
T ss_pred             cCccccHHHHHHHHHHhc---CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence            445668899999999876   367899999999999999999999884 6999999984

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.14  E-value=0.1  Score=41.24  Aligned_cols=97  Identities=20%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             EEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          124 SLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       124 VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      ++|+|||+|... .++...   ..+++.|.++.++...+.+... ..    ...+.+...++.....+            
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~------------  113 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG----LGLVDFVVADALGGVLP------------  113 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----CCceEEEEeccccCCCC------------
Confidence            999999999876 444443   3889999999888874433322 21    11145555554442000            


Q ss_pred             ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                              ......||++......+... ...++..+.+.++++|..
T Consensus       114 --------~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~  151 (257)
T COG0500         114 --------FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRL  151 (257)
T ss_pred             --------CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEE
Confidence                    00113799994444444444 788899999999987643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.13  E-value=0.077  Score=49.51  Aligned_cols=47  Identities=23%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      .....+||==|||.|-++.-+|+.|..|.+.+.+-.|  ++..|.-+|.
T Consensus        54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~  100 (270)
T PF07942_consen   54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNH  100 (270)
T ss_pred             CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHcc
Confidence            3456799999999999999999999999999998666  4566776775

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.10  E-value=0.009  Score=59.68  Aligned_cols=129  Identities=15%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCC---CeEEEEcCccCHHHHHHHHhCCEEEEe---cCchHHHHHHHHHHHHc
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNG---IISLELGAGTGLAGILLSRVAWTVFLT---DHGNYILDNCAKNVQLN  165 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g---~~VLELG~GtGL~gl~la~~~~~V~~T---D~~~~~l~~~~~Nv~~N  165 (335)
                      ++.|.+...+|..-.+.|.+..  +....+   +.+||+|||+|..|-.+...+-.++.+   |.++..++.+.   ++-
T Consensus        88 Pgggt~F~~Ga~~Yid~i~~~~--~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal---eRG  162 (506)
T PF03141_consen   88 PGGGTMFPHGADHYIDQIAEMI--PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL---ERG  162 (506)
T ss_pred             CCCCccccCCHHHHHHHHHHHh--hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh---hcC
Confidence            4567788888888777777664  121232   379999999999998888887544333   33332222221   111


Q ss_pred             cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCC
Q 019839          166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLG  244 (335)
Q Consensus       166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~  244 (335)
                      -...  .+.+-.+.|.+-                            ...||+|=++.|+-.- .....++-.+.|+|+||
T Consensus       163 vpa~--~~~~~s~rLPfp----------------------------~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG  212 (506)
T PF03141_consen  163 VPAM--IGVLGSQRLPFP----------------------------SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG  212 (506)
T ss_pred             cchh--hhhhccccccCC----------------------------ccchhhhhcccccccchhcccceeehhhhhhccC
Confidence            0000  011111233222                            2479999999988653 33356788899999999


Q ss_pred             CcceeeceEEE
Q 019839          245 SKKVLVNMVLY  255 (335)
Q Consensus       245 ~~~~~~~p~i~  255 (335)
                      |-.+...|++|
T Consensus       213 Gyfv~S~ppv~  223 (506)
T PF03141_consen  213 GYFVLSGPPVY  223 (506)
T ss_pred             ceEEecCCccc
Confidence            98777777776

; GO: 0008168 methyltransferase activity

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.95  E-value=0.011  Score=54.82  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             CCCCCCCeEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCC-----------------------
Q 019839          116 SSDFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH-----------------------  171 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~-----------------------  171 (335)
                      +...+|.++||+|||.-+..++.| ....+|+++|+.+..++.+++=++.- ....-                       
T Consensus        52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~  130 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEK  130 (256)
T ss_dssp             TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHH
Confidence            456789999999999877655544 44679999999987777776543221 10000                       


Q ss_pred             -CCee-EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC----cccHHHHHHHHHHhccCCC
Q 019839          172 -QGSV-HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       172 -~~~v-~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~  245 (335)
                       ...| .|...|-.+..+-.                 ......++||+|+++-|+-.    .+.....++.+.++|+|||
T Consensus       131 lR~~Vk~Vv~cDV~~~~pl~-----------------~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG  193 (256)
T PF01234_consen  131 LRRAVKQVVPCDVTQPNPLD-----------------PPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGG  193 (256)
T ss_dssp             HHHHEEEEEE--TTSSSTTT-----------------TS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEE
T ss_pred             HHHhhceEEEeeccCCCCCC-----------------ccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCc
Confidence             0001 12222222211100                 00011235999999888754    4566777888888999988


Q ss_pred             cce
Q 019839          246 KKV  248 (335)
Q Consensus       246 ~~~  248 (335)
                      ..+
T Consensus       194 ~Li  196 (256)
T PF01234_consen  194 HLI  196 (256)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.94  E-value=0.034  Score=49.95  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|.+||++|=|.|++.-.+-.. -..=++.+.+|++++.++.+.=.-      ..++.+....|.+..+..        
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~L--------  165 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNTL--------  165 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhccc--------
Confidence            58899999999999877666555 234567789999999998775332      467888999999875433        


Q ss_pred             cccccccCcchhhccCCccEEEEeccc-cCcccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVI-YSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDvi-Y~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                   ..+.||=|+- |.+ -+-+.+-.+.+.+-+||+|+|.
T Consensus       166 -------------~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv  201 (271)
T KOG1709|consen  166 -------------PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGV  201 (271)
T ss_pred             -------------cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCce
Confidence                         2346887763 222 2234566678889999999873

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.11  Score=50.57  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ..-.|.+|||+.|+.|-=+..+|.+    |..|++.|.++.=++.++.|+++-+.     .++.+...|-......    
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~----  223 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAEL----  223 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccc----
Confidence            3467899999999998545444444    35689999999999999999998763     3445554442211100    


Q ss_pred             CCCCccccccccCcchhhccCCccEEEE------eccc-------cC---------cccHHHHHHHHHHhccCCCcceee
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLA------ADVI-------YS---------DDLTDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDvi-------Y~---------~~~~~~L~~tl~~lL~~~~~~~~~  250 (335)
                                      .....+||-||.      .-++       |.         ......++....+++++||..   
T Consensus       224 ----------------~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~L---  284 (355)
T COG0144         224 ----------------LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVL---  284 (355)
T ss_pred             ----------------ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE---
Confidence                            001124777765      2222       22         224567888888999998754   


Q ss_pred             ceEEEEEEeee
Q 019839          251 NMVLYLALEKR  261 (335)
Q Consensus       251 ~p~i~ia~~~R  261 (335)
                         +|-.|..-
T Consensus       285 ---VYSTCS~~  292 (355)
T COG0144         285 ---VYSTCSLT  292 (355)
T ss_pred             ---EEEccCCc
Confidence               67777543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.81  E-value=0.12  Score=46.39  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             eeehhH--HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839           97 QVWKAE--LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS  174 (335)
Q Consensus        97 ~vW~aa--~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~  174 (335)
                      +-||--  -...+||...      -++..|-|+|||-+.++-.+ ..+.+|..-|+-.           .|.        
T Consensus        53 ~~WP~nPvd~iI~~l~~~------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva-----------~n~--------  106 (219)
T PF05148_consen   53 KKWPVNPVDVIIEWLKKR------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA-----------PNP--------  106 (219)
T ss_dssp             CTSSS-HHHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS------------SST--------
T ss_pred             hcCCCCcHHHHHHHHHhc------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccC-----------CCC--------
Confidence            456653  2455565432      35679999999999776332 2345788888862           121        


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEE
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVL  254 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i  254 (335)
                       .|...|-.+.+.                       ..+..|++|.+=.+--.... .++....|+|+++|        .
T Consensus       107 -~Vtacdia~vPL-----------------------~~~svDv~VfcLSLMGTn~~-~fi~EA~RvLK~~G--------~  153 (219)
T PF05148_consen  107 -RVTACDIANVPL-----------------------EDESVDVAVFCLSLMGTNWP-DFIREANRVLKPGG--------I  153 (219)
T ss_dssp             -TEEES-TTS-S-------------------------TT-EEEEEEES---SS-HH-HHHHHHHHHEEEEE--------E
T ss_pred             -CEEEecCccCcC-----------------------CCCceeEEEEEhhhhCCCcH-HHHHHHHheeccCc--------E
Confidence             233344333211                       23589999988777655544 47889999999987        4


Q ss_pred             EEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCC
Q 019839          255 YLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLN  308 (335)
Q Consensus       255 ~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~  308 (335)
                      +...|.+..|+         ..+.|.+.+..            -||.+...+.+
T Consensus       154 L~IAEV~SRf~---------~~~~F~~~~~~------------~GF~~~~~d~~  186 (219)
T PF05148_consen  154 LKIAEVKSRFE---------NVKQFIKALKK------------LGFKLKSKDES  186 (219)
T ss_dssp             EEEEEEGGG-S----------HHHHHHHHHC------------TTEEEEEEE--
T ss_pred             EEEEEecccCc---------CHHHHHHHHHH------------CCCeEEecccC
Confidence            44456666653         24667776642            47777765543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.77  Score=41.02  Aligned_cols=172  Identities=17%  Similarity=0.238  Sum_probs=95.8

Q ss_pred             cceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHH-HHHHHHccCCCC
Q 019839           95 GLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNC-AKNVQLNSGVFS  170 (335)
Q Consensus        95 G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~-~~Nv~~N~~~~~  170 (335)
                      -.++|+.- --||.-|+..+..-+.-.|.+||=|||-+|.+-=-.+.. + ..|++.+.++.+..-+ .---++++    
T Consensus        50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N----  125 (231)
T COG1889          50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN----  125 (231)
T ss_pred             ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC----
Confidence            47999872 234444444332235568999999999999554444433 4 5799999998655333 22222222    


Q ss_pred             CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceee
Q 019839          171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~  250 (335)
                          +--.--|-..+              .+|.      ..-++.|+|.. ||- .+.+.+-+......+|+++|.    
T Consensus       126 ----i~PIL~DA~~P--------------~~Y~------~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~G~----  175 (231)
T COG1889         126 ----IIPILEDARKP--------------EKYR------HLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKGGY----  175 (231)
T ss_pred             ----ceeeecccCCc--------------HHhh------hhcccccEEEE-ecC-CchHHHHHHHHHHHhcccCCe----
Confidence                21111111111              0000      01224444443 111 246778888999999999884    


Q ss_pred             ceEEEEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeee-EEecCCCCCccccccCCCCceEE
Q 019839          251 NMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVG-KCIDLNEFPQYVREYDRGNDVEL  325 (335)
Q Consensus       251 ~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v-~~i~~~~~pq~~~~yer~~~lel  325 (335)
                         ++++.+-|.-      |++++.-.-|.+.+.... .        .+|++ +.+++.       +|++.-.+.+
T Consensus       176 ---~~i~iKArSI------dvT~dp~~vf~~ev~kL~-~--------~~f~i~e~~~Le-------Pye~DH~~i~  226 (231)
T COG1889         176 ---VVIAIKARSI------DVTADPEEVFKDEVEKLE-E--------GGFEILEVVDLE-------PYEKDHALIV  226 (231)
T ss_pred             ---EEEEEEeecc------cccCCHHHHHHHHHHHHH-h--------cCceeeEEeccC-------CcccceEEEE
Confidence               6678888865      566666667877665432 1        23444 445554       6777554444

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.41  E-value=0.16  Score=46.05  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .++.+++||||.=||..+|+.|..   +.+|++.|++++..+...+-++..+.    ..++.+...+-.+......    
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~----  142 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELL----  142 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHH----
Confidence            478899999999999999988877   67999999999888888776666553    3566666654333211100    


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                           .        -...+.||+++.=   .+....-.....+-+|+++||
T Consensus       143 -----~--------~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GG  177 (237)
T KOG1663|consen  143 -----A--------DGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGG  177 (237)
T ss_pred             -----h--------cCCCCceeEEEEc---cchHHHHHHHHHHHhhccccc
Confidence                 0        0124689998861   122334467777888999887

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.39  E-value=0.22  Score=48.58  Aligned_cols=112  Identities=16%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC----------------------------------------
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW----------------------------------------  143 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~----------------------------------------  143 (335)
                      .||.-|+..   .....+..++|-=||+|.+.|-+|..+.                                        
T Consensus       178 tLAaAil~l---agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~  254 (381)
T COG0116         178 TLAAAILLL---AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL  254 (381)
T ss_pred             HHHHHHHHH---cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence            344444433   2445567899999999999999998874                                        


Q ss_pred             -EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEec
Q 019839          144 -TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD  222 (335)
Q Consensus       144 -~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD  222 (335)
                       .+++.|+++.+++.++.|++..+.    ...|.+...|-.+..++                       .+.+|+||+.-
T Consensus       255 ~~~~G~Did~r~i~~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~-----------------------~~~~gvvI~NP  307 (381)
T COG0116         255 PIIYGSDIDPRHIEGAKANARAAGV----GDLIEFKQADATDLKEP-----------------------LEEYGVVISNP  307 (381)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCC----CceEEEEEcchhhCCCC-----------------------CCcCCEEEeCC
Confidence             377999999999999999998775    46788888887665221                       14788888843


Q ss_pred             cccC----c----ccHHHHHHHHHHhccCCC
Q 019839          223 VIYS----D----DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       223 viY~----~----~~~~~L~~tl~~lL~~~~  245 (335)
                      ..=.    .    .+...|.+++++.++.-+
T Consensus       308 PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws  338 (381)
T COG0116         308 PYGERLGSEALVAKLYREFGRTLKRLLAGWS  338 (381)
T ss_pred             CcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence            2211    1    145566667777776443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.06  E-value=0.28  Score=45.34  Aligned_cols=113  Identities=20%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ....|-|+|||-+-++.   ..-..|+.-|+.+           .|         -.|...|..+..             
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-----------~~---------~~V~~cDm~~vP-------------  223 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA-----------VN---------ERVIACDMRNVP-------------  223 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeec-----------CC---------CceeeccccCCc-------------
Confidence            45689999999885433   3345788888862           22         233334433321             


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhHH
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHF  279 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f  279 (335)
                                ..+++.|+++.+=.+.-.... .++....++|+++|  .     +||| +.+..|+-         -..|
T Consensus       224 ----------l~d~svDvaV~CLSLMgtn~~-df~kEa~RiLk~gG--~-----l~IA-Ev~SRf~d---------v~~f  275 (325)
T KOG3045|consen  224 ----------LEDESVDVAVFCLSLMGTNLA-DFIKEANRILKPGG--L-----LYIA-EVKSRFSD---------VKGF  275 (325)
T ss_pred             ----------CccCcccEEEeeHhhhcccHH-HHHHHHHHHhccCc--e-----EEEE-ehhhhccc---------HHHH
Confidence                      134589999887666655544 47899999999988  3     6665 44444421         2336


Q ss_pred             HHHHhhhhcccccccccCCCeeeEEecCC
Q 019839          280 RSYIMEEGEHRRFERESFPAFVGKCIDLN  308 (335)
Q Consensus       280 ~~~l~~~~~~~~~~~~~~~~f~v~~i~~~  308 (335)
                      .+.+..            .||.++..++.
T Consensus       276 ~r~l~~------------lGF~~~~~d~~  292 (325)
T KOG3045|consen  276 VRALTK------------LGFDVKHKDVS  292 (325)
T ss_pred             HHHHHH------------cCCeeeehhhh
Confidence            776653            46777776654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=95.05  E-value=0.16  Score=46.30  Aligned_cols=45  Identities=16%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             CeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHcc
Q 019839          122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      ..+||||||.|-.-+.+|+..  ..+++.++....+..+...+...+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~   96 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG   96 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC
Confidence            589999999998888888884  679999999877777766665544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.00  E-value=0.15  Score=45.97  Aligned_cols=61  Identities=18%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      -++.++.|+||--|.+.+.+-+.+  ..+++.|+++..++.+.+|+..|..    ..++.++..|=.
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl   77 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGL   77 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCc
Confidence            355679999999999999999884  6899999999999999999999876    467888877743

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.77  E-value=0.038  Score=54.11  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      .+.|..-|++-+..-+--+..    -.-.|..|.|+=||.|-.++.+++.+.+|++-|.++++++.++.|+..|...   
T Consensus       225 ~DfskVYWnsRL~~Eherlsg----~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~---  297 (495)
T KOG2078|consen  225 FDFSKVYWNSRLSHEHERLSG----LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD---  297 (495)
T ss_pred             EecceEEeeccchhHHHHHhh----ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc---
Confidence            356677799655544444332    2235778999999999999999999999999999999999999999999864   


Q ss_pred             CCeeEEEeccCCC
Q 019839          172 QGSVHVRDLNWMN  184 (335)
Q Consensus       172 ~~~v~v~~ldW~~  184 (335)
                      ..++.+..+|-.+
T Consensus       298 ~~~iei~Nmda~~  310 (495)
T KOG2078|consen  298 PSAIEIFNMDAKD  310 (495)
T ss_pred             hhheeeecccHHH
Confidence            3447777666433

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.72  E-value=0.48  Score=42.70  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=69.4

Q ss_pred             ehhHHHHHHHHHhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           99 WKAELVLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        99 W~aa~~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      -+++.+|.+||......... -...++||+||=..-..  ++..+ -.|+..|+++                    ..-.
T Consensus        29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns--------------------~~~~   86 (219)
T PF11968_consen   29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNS--------------------QHPG   86 (219)
T ss_pred             CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCC--------------------CCCC
Confidence            36899999999876421111 12369999999743221  22222 3699999873                    2345


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~  246 (335)
                      +.+-||.+...+.                    .+.++||+|.+|=|+=..+.   --.+++-..++|+++|.
T Consensus        87 I~qqDFm~rplp~--------------------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen   87 ILQQDFMERPLPK--------------------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             ceeeccccCCCCC--------------------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            6677777753321                    13458999999999966543   34577888889998887

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.64  E-value=0.23  Score=46.50  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             CCeEEEEcCc-cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHH-ccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          121 GIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       121 g~~VLELG~G-tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++|+=|||| .-+++|.+++.   +..|++.|+++++.+..++=+.. .+.    ..++.+...|-.+.          
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~----------  186 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDV----------  186 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhcc----------
Confidence            3599999999 68999999976   46799999999999988876662 221    35677776664332          


Q ss_pred             CccccccccCcchhhccCCccEEEEecccc-CcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIY-SDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY-~~~~~~~L~~tl~~lL~~~~  245 (335)
                                   ......||+|+-|-.+. +.+.-..++.-|.+.|++|.
T Consensus       187 -------------~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga  224 (276)
T PF03059_consen  187 -------------TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGA  224 (276)
T ss_dssp             --------------GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred             -------------ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCc
Confidence                         11245899888777776 45667789999999999876

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=94.60  E-value=0.53  Score=44.29  Aligned_cols=103  Identities=9%  Similarity=-0.013  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHH-h-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSR-V-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~-~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      +..+|||+-||.|--=+-+.. . .  .+|.+-|+++..++.-+.-++.++.    ...+++...|-.+...-       
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l-------  203 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSL-------  203 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHh-------
Confidence            456999999999944332222 2 2  5899999999999999999988875    34458888886654110       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---~~~L~~tl~~lL~~~~~  246 (335)
                                   ......++++|.|-++-..++   ....++-+..++.|+|.
T Consensus       204 -------------~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~  244 (311)
T PF12147_consen  204 -------------AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGY  244 (311)
T ss_pred             -------------hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence                         112346899999988765544   45566777788888773

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=94.15  E-value=0.16  Score=47.85  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=57.5

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFS  170 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~  170 (335)
                      .-..+++.+-.++-.++..      ..|.+|||+.||.|-=+..+|.. .  ..|++.|+++.=+..++.|+.+.+    
T Consensus        65 G~~~vQd~sS~l~~~~L~~------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----  134 (283)
T PF01189_consen   65 GLFYVQDESSQLVALALDP------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----  134 (283)
T ss_dssp             TSEEEHHHHHHHHHHHHTT------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred             CcEEecccccccccccccc------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----
Confidence            3467788777777666543      57889999999999777666665 2  599999999999999999998876    


Q ss_pred             CCCeeEEEe
Q 019839          171 HQGSVHVRD  179 (335)
Q Consensus       171 ~~~~v~v~~  179 (335)
                       ..++.+..
T Consensus       135 -~~~v~~~~  142 (283)
T PF01189_consen  135 -VFNVIVIN  142 (283)
T ss_dssp             --SSEEEEE
T ss_pred             -CceEEEEe
Confidence             34555554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.93  E-value=0.42  Score=48.75  Aligned_cols=100  Identities=11%  Similarity=-0.048  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+..+||+|||.|-.-+.+|+.  -..+++.|+....+..+.+.+...+     ..++.+...+......          
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~----------  411 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILN----------  411 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHH----------
Confidence            4678999999999888888877  3689999999876666655555443     2455554443211100          


Q ss_pred             cccccccCcchhhccCCccEEEE--eccccCcc------cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLA--ADVIYSDD------LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~------~~~~L~~tl~~lL~~~~  245 (335)
                                 .-...++|-|..  .|--.-..      ....+++.+.++|++||
T Consensus       412 -----------~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG  456 (506)
T PRK01544        412 -----------DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG  456 (506)
T ss_pred             -----------hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence                       001123444443  22221111      35789999999999987

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=93.76  E-value=0.8  Score=42.68  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ....|.+|||-|.|.|-.|.++|+.-   .+++--|++..-.+.+.+-.+..+.    ..++++..=|
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrD  165 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRD  165 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEee
Confidence            55789999999999999999999983   5899999997666666666666553    4556555544

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.55  E-value=0.3  Score=45.51  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .++.|+.|+=+| ---|+||++|.-  .++|...|+++.+++.+.+-++.-+     ..++.+..+|..++.|..     
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~-----  217 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPED-----  217 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHH-----
Confidence            788999999999 677999998877  4799999999999999998887655     356788888887775532     


Q ss_pred             CCccccccccCcchhhccCCccEEEE
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLA  220 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIla  220 (335)
                                      ..++||+++.
T Consensus       218 ----------------~~~kFDvfiT  227 (354)
T COG1568         218 ----------------LKRKFDVFIT  227 (354)
T ss_pred             ----------------HHhhCCeeec
Confidence                            3468999886

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.55  E-value=0.59  Score=44.79  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCccCH-HHHHHHHh-----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE--EeccCCCCCCCCcc
Q 019839          120 NGIISLELGAGTGL-AGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV--RDLNWMNPWPPIFS  191 (335)
Q Consensus       120 ~g~~VLELG~GtGL-~gl~la~~-----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v--~~ldW~~~~~~~~~  191 (335)
                      .+..++|||||.|. +.+.+..+     ..+.+..|++.++|+.+..++..-.     .+.+.+  ...|+.+...    
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l~----  146 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGLA----  146 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHHh----
Confidence            56689999999984 45544433     3579999999999999988887222     233444  3444443311    


Q ss_pred             CCCCCccccccccCcchhhccCCccEEEEec-cccC--cccHHHHHHHHHH-hccCCCc
Q 019839          192 LGNSSASQERYSWNSSELKEVQRASVLLAAD-VIYS--DDLTDALFHTLKR-LMPLGSK  246 (335)
Q Consensus       192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD-viY~--~~~~~~L~~tl~~-lL~~~~~  246 (335)
                                  |-.. ........+|+--- .|-+  +.....|++.+++ .|++++.
T Consensus       147 ------------~l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~  192 (319)
T TIGR03439       147 ------------WLKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDS  192 (319)
T ss_pred             ------------hccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCE
Confidence                        1000 00012345555432 4544  4556678899999 9988764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=93.46  E-value=0.15  Score=44.19  Aligned_cols=50  Identities=26%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHhhcCCCCCC---CCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchH
Q 019839          100 KAELVLADFVMHKMCTSSDF---NGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNY  153 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~---~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~  153 (335)
                      +|+.-|.+-+...    ..+   .+.+||||||++|-.+-++...+   .+|++.|+.+.
T Consensus         4 Ra~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    4 RAAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             THHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            5777788777655    222   45899999999999999988887   79999999864

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.28  E-value=0.073  Score=51.07  Aligned_cols=107  Identities=17%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      +.|..++|||.|+|.|....++-..   -..+++...++ .|..+-.-+..|.         .....+|....-...   
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv---------~t~~td~r~s~vt~d---  176 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENV---------STEKTDWRASDVTED---  176 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhc---------ccccCCCCCCccchh---
Confidence            6789999999999998644433333   24677777775 3333334444443         223366665421110   


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHH---HHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDA---LFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~---L~~tl~~lL~~~~~~~  248 (335)
                                  -..+.....|++||+.|=+-.+....+   .++.+-.++++||..+
T Consensus       177 ------------Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lV  222 (484)
T COG5459         177 ------------RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLV  222 (484)
T ss_pred             ------------ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEE
Confidence                        001223457999999998887765554   4555556677877544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=92.98  E-value=0.42  Score=46.30  Aligned_cols=100  Identities=21%  Similarity=0.292  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHH---HHccCCCCCCCeeEEEecc---CCCCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNV---QLNSGVFSHQGSVHVRDLN---WMNPWPPIFS  191 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv---~~N~~~~~~~~~v~v~~ld---W~~~~~~~~~  191 (335)
                      .-.+||=||-|-||..-.+.+.-  .+|+..|.+|.|++..++|.   ..|..... ..++++..-|   |-..      
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~-dpRv~Vv~dDAf~wlr~------  361 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFS-DPRVTVVNDDAFQWLRT------  361 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCcc-CCeeEEEeccHHHHHHh------
Confidence            34589999999999988888884  59999999999999999775   34554433 4566665433   3322      


Q ss_pred             CCCCCccccccccCcchhhccCCccEEEEeccccCcc-------cHHHHHHHHHHhccCCCcc
Q 019839          192 LGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-------~~~~L~~tl~~lL~~~~~~  247 (335)
                                         ....||+||-- .. ++.       .-..|...+++.++++|..
T Consensus       362 -------------------a~~~fD~vIVD-l~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~  403 (508)
T COG4262         362 -------------------AADMFDVVIVD-LP-DPSTPSIGRLYSVEFYRLLSRHLAETGLM  403 (508)
T ss_pred             -------------------hcccccEEEEe-CC-CCCCcchhhhhhHHHHHHHHHhcCcCceE
Confidence                               23478888751 11 111       1234667778888877743

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.82  E-value=0.17  Score=48.16  Aligned_cols=44  Identities=34%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-.|.+||=+||| .||+.+..|+.  +++|+++|..+.-|+.+++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            34578999999999 79999998887  4699999999999998886

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.30  E-value=0.43  Score=39.33  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCEEEEecCchH
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNY  153 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~  153 (335)
                      .+|+|+..+      ....+|+|+|-|-= -++..++..|..|++||+++.
T Consensus         3 ~~a~~ia~~------~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~   47 (127)
T PF03686_consen    3 DFAEYIARL------NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHHHH------S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred             hHHHHHHHh------CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence            578999866      23449999999953 667778888999999999964

; PDB: 2K4M_A.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.23  E-value=0.79  Score=37.15  Aligned_cols=91  Identities=20%  Similarity=0.217  Sum_probs=58.2

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      +++|+....     -+| +|+|+|.|-= -++-.+++.|..|++||+++.       +    .     ...+.+..=|-.
T Consensus         4 ~a~~iAre~-----~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~----a-----~~g~~~v~DDit   61 (129)
T COG1255           4 VAEYIAREN-----ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------T----A-----PEGLRFVVDDIT   61 (129)
T ss_pred             HHHHHHHHh-----cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc-------c----C-----cccceEEEccCC
Confidence            566766431     344 8999998854 455667777999999999864       1    1     122344444433


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                      ++                            ..-+--++|.+|...-...|.+.|-++.+.=+
T Consensus        62 nP----------------------------~~~iY~~A~lIYSiRpppEl~~~ildva~aVg   95 (129)
T COG1255          62 NP----------------------------NISIYEGADLIYSIRPPPELQSAILDVAKAVG   95 (129)
T ss_pred             Cc----------------------------cHHHhhCccceeecCCCHHHHHHHHHHHHhhC
Confidence            33                            33455678888887777777777777765433

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.64  E-value=0.1  Score=49.13  Aligned_cols=72  Identities=19%  Similarity=0.332  Sum_probs=52.8

Q ss_pred             ceeehhHHHHHHH--HHhhcC-CCCCCCCCeEEEEcCccCHHHH-HHHHhC-CEEEEecCchHHHHHHHHHHHHccC
Q 019839           96 LQVWKAELVLADF--VMHKMC-TSSDFNGIISLELGAGTGLAGI-LLSRVA-WTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus        96 ~~vW~aa~~La~~--l~~~~~-~~~~~~g~~VLELG~GtGL~gl-~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      .+.|++...|=.+  +.+... ..-...|..|.||-||.|...+ .+-++| +.|+|.|.+|..++.+++|++.|+.
T Consensus       167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V  243 (351)
T KOG1227|consen  167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV  243 (351)
T ss_pred             EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence            5888887665443  111100 0122456889999999998888 566664 6899999999999999999999974

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.35  E-value=0.38  Score=43.77  Aligned_cols=61  Identities=18%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             HHHHHHHhhcCCCCCC--CCCeEEEEcCccCH-HHH-HHHHhCCEEEEecCchHHHHHHHHHHHHccC
Q 019839          104 VLADFVMHKMCTSSDF--NGIISLELGAGTGL-AGI-LLSRVAWTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~--~g~~VLELG~GtGL-~gl-~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      .|++.|.+..   ...  ++.++||+|.|.-. --| -.-..|.+.++||+++..+..++.|+..|..
T Consensus        63 ~laDLL~s~~---g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~  127 (292)
T COG3129          63 HLADLLASTS---GQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG  127 (292)
T ss_pred             HHHHHHHhcC---CCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc
Confidence            4555555442   233  45578888777541 111 2223378999999999999999999999953

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.28  E-value=1.3  Score=44.38  Aligned_cols=97  Identities=12%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHH-HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      -++|.||||.--...-+-+.|. .|+.+|+++-+++.+ .+|+..+       .-......|-....             
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-------~~~~~~~~d~~~l~-------------  109 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-------PEMQMVEMDMDQLV-------------  109 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-------cceEEEEecchhcc-------------
Confidence            4899999999887877777774 799999998666544 5554322       23444444433321             


Q ss_pred             cccccCcchhhccCCccEEEE----------eccccCcccHHHHHHHHHHhccCCCcce
Q 019839          200 ERYSWNSSELKEVQRASVLLA----------ADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIla----------sDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                -+.+.||+||.          ++.+++.......+..+.++++++++.+
T Consensus       110 ----------fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~  158 (482)
T KOG2352|consen  110 ----------FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI  158 (482)
T ss_pred             ----------CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence                      12347788776          3344444455667888999999988654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=91.01  E-value=0.6  Score=41.22  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~  160 (335)
                      -..-|.+.+....    ..+|..|||-=||+|-+++++.+++.+.++.|++++..+.+++
T Consensus       176 kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3556666666652    3578899999999999999999999999999999988887753

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=90.82  E-value=0.62  Score=45.70  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+.+|||-=||+|+=||-.++. +  .+|++-|+++.+++.+++|+++|+...   .++.+...|-....          
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll----------  115 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLL----------  115 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHH----------
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHh----------
Confidence            4569999999999999999998 2  689999999999999999999998632   14555544321110          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~~  245 (335)
                                  ......||+|=.     |+ ....++++..-+.++.+|
T Consensus       116 ------------~~~~~~fD~IDl-----DPfGSp~pfldsA~~~v~~gG  148 (377)
T PF02005_consen  116 ------------YSRQERFDVIDL-----DPFGSPAPFLDSALQAVKDGG  148 (377)
T ss_dssp             ------------CHSTT-EEEEEE-------SS--HHHHHHHHHHEEEEE
T ss_pred             ------------hhccccCCEEEe-----CCCCCccHhHHHHHHHhhcCC
Confidence                        012346777743     22 345577777777777655

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.78  E-value=0.58  Score=45.33  Aligned_cols=46  Identities=28%  Similarity=0.273  Sum_probs=42.7

Q ss_pred             CCeEEEEcCccCHHHHHHHHh-CC-EEEEecCchHHHHHHHHHHHHcc
Q 019839          121 GIISLELGAGTGLAGILLSRV-AW-TVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      .++|+|-=||||+=||-.|.. +. +|++-|++|.+.+.++.|+.+|.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~  100 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS  100 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence            789999999999999999988 34 79999999999999999999994

>PRK11524 putative methyltransferase; Provisional

Probab=90.38  E-value=1  Score=42.20  Aligned_cols=58  Identities=14%  Similarity=0.076  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      .-|.+.+...    ...+|..|||-=||+|-+++++.++|.+.++.|++++..+.+++.+..
T Consensus       195 ~~L~erlI~~----~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILA----SSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            4566665554    347899999999999999999999999999999999999999888754

>KOG2730 consensus Methylase [General function prediction only]

Probab=89.90  E-value=0.55  Score=42.48  Aligned_cols=74  Identities=12%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      |..+|..+...      ..-..|++-=||.|--.+..|..+..|++.|++|.-+..++.|++.-+.    ..++.+...|
T Consensus        82 a~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD  151 (263)
T KOG2730|consen   82 AEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGD  151 (263)
T ss_pred             HHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC----CceeEEEech
Confidence            44555555433      2455799999999988999999999999999999999999999998875    4689999999


Q ss_pred             CCCC
Q 019839          182 WMNP  185 (335)
Q Consensus       182 W~~~  185 (335)
                      |.+.
T Consensus       152 ~ld~  155 (263)
T KOG2730|consen  152 FLDL  155 (263)
T ss_pred             HHHH
Confidence            9875

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=89.50  E-value=1.1  Score=43.85  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHH-HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+.+..++++|||.|-+....+.. +..++..|+++.-+... ..++..+-.     .+..+ ..-|.-..+       
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~-~~~~~~~~~-------  173 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-----NKCNF-VVADFGKMP-------  173 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-----hhcce-ehhhhhcCC-------
Confidence            3456678999999999888888877 47899999997433222 222222211     11122 222222111       


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                     .+...||.+-+.|+.-+.+....+++.+.+.++|||.
T Consensus       174 ---------------fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~  210 (364)
T KOG1269|consen  174 ---------------FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGL  210 (364)
T ss_pred             ---------------CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCce
Confidence                           1345899999999999999999999999999999884

>PRK13699 putative methylase; Provisional

Probab=89.36  E-value=1.6  Score=39.61  Aligned_cols=58  Identities=9%  Similarity=-0.014  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      .-|.+.+...    ...+|..|||-=||+|-+++++.+.|.+.++.|++++..+.+.+.++.
T Consensus       150 ~~l~~~~i~~----~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        150 VTSLQPLIES----FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHH----hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            4455555544    235788999999999999999999999999999999888888777754

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=89.24  E-value=0.57  Score=37.52  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHG  151 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~  151 (335)
                      +-..-+|||||.||+--++.+.|..=.+.|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence            34579999999999999999999888888875

; GO: 0008168 methyltransferase activity

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=88.91  E-value=1.7  Score=41.85  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             CeEEEEcCccC-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          122 IISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       122 ~~VLELG~GtG-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      ...+|+|+|+| +++.++. .-.+|-+++.+..-+...+.+.. -        .|.-...|...+.              
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~~--------------  234 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQDT--------------  234 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C--------CcceecccccccC--------------
Confidence            67999999999 5556666 55568888887544444444432 1        1333344444332              


Q ss_pred             ccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcceeec
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLVN  251 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~~~~~  251 (335)
                                  .+-|+|+.-=|++|  +++.-.+++-+.+.|+++|+.++++
T Consensus       235 ------------P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  235 ------------PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             ------------CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                        25679999999988  5677789999999999988766444

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=88.75  E-value=2  Score=39.61  Aligned_cols=134  Identities=9%  Similarity=-0.001  Sum_probs=73.7

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+|+|||||.==+++.....  +..+++.|++..+++.+.+=+..-+      ....+...|-....            
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~~~------------  167 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLSDP------------  167 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSH------------
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeeccC------------
Confidence            579999999988767665544  4699999999999999987766543      23444444444331            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhh
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGY  276 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~  276 (335)
                                  .....|+.+.-=++.--+.  ....++.|..+=.         |.+.|++.+|.--.   -  -.+++
T Consensus       168 ------------~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~---------~~~vVSfPtrSL~g---R--~~gm~  221 (251)
T PF07091_consen  168 ------------PKEPADLALLLKTLPCLERQRRGAGLELLDALRS---------PHVVVSFPTRSLGG---R--NKGME  221 (251)
T ss_dssp             ------------TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCE---------SEEEEEEES------------TTHH
T ss_pred             ------------CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCC---------CeEEEecccccccc---C--ccccc
Confidence                        1236888887544432221  1222333333321         22778887774311   0  12456


Q ss_pred             hHHHHHHhhhhcccccccccCCCeeeEEec
Q 019839          277 SHFRSYIMEEGEHRRFERESFPAFVGKCID  306 (335)
Q Consensus       277 ~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~  306 (335)
                      ..|+.+++..-        ...+|.+.++.
T Consensus       222 ~~y~~~fe~~~--------~~~~~~~~~~~  243 (251)
T PF07091_consen  222 QTYSAWFEALA--------AERGWIVDRLT  243 (251)
T ss_dssp             HCHHHHHHHHC--------CTTCEEEEEEE
T ss_pred             cCHHHHHHHhc--------ccCCceeeeee
Confidence            66777775421        12468777754

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=88.43  E-value=0.18  Score=39.52  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=29.5

Q ss_pred             EEEcCccCHHHHHHHHh---C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          125 LELGAGTGLAGILLSRV---A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       125 LELG~GtGL~gl~la~~---~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ||+|+..|..++.+++.   .  .++++.|..+. .+..+++++....    ..++++...+-.+..+            
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~------------   63 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLP------------   63 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHH------------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHH------------
Confidence            79999999888777765   2  37999999975 3333333332221    2446665554322100            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                              .. ..+++|+|+. |.-+..+....-+..+...|++++
T Consensus        64 --------~~-~~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~gg   99 (106)
T PF13578_consen   64 --------SL-PDGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGG   99 (106)
T ss_dssp             --------HH-HH--EEEEEE-ES---HHHHHHHHHHHGGGEEEEE
T ss_pred             --------Hc-CCCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCe
Confidence                    01 1358888876 333333444555666666777655

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=87.99  E-value=2  Score=41.67  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----------CCEEEEecCchHHHHHHHHHHH
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----------AWTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~----------~~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      +.++|.|+.+....-.....-.++|||+|.|...--+.+.          +.++.+.+.++.+...=+.+++
T Consensus        59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~  130 (370)
T COG1565          59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK  130 (370)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence            4567888776531112223458999999999766443332          3589999999766555454444

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=87.35  E-value=1  Score=45.93  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          118 DFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+.+|+=+||| .|+..+.+|+. |+.|+++|.+++-++.++.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3578999999999 69999888877 8899999999988887764

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=85.76  E-value=1.6  Score=40.72  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             eEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHH
Q 019839          123 ISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv  162 (335)
                      +|+||-||.|-.++.+...|. .|++.|+++.+++..+.|.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~   42 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF   42 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence            699999999999888888876 4788999999999888886

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=85.60  E-value=2.2  Score=39.01  Aligned_cols=83  Identities=12%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             eEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH---HHHHccCCCC-CCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          123 ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK---NVQLNSGVFS-HQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~---Nv~~N~~~~~-~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +|||.=||.|-=++++|..|.+|++.+.+|-+-.+++.   +...+..... ...++++...|-.+...           
T Consensus        78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-----------  146 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-----------  146 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-----------
T ss_pred             EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-----------
Confidence            89999999999999999999999999999866555553   3333221100 02466776665444321           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD  228 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~  228 (335)
                                 .....||+|.. |-+|...
T Consensus       147 -----------~~~~s~DVVY~-DPMFp~~  164 (234)
T PF04445_consen  147 -----------QPDNSFDVVYF-DPMFPER  164 (234)
T ss_dssp             -----------CHSS--SEEEE---S----
T ss_pred             -----------hcCCCCCEEEE-CCCCCCc
Confidence                       12357898887 6666543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.71  E-value=2  Score=38.50  Aligned_cols=114  Identities=15%  Similarity=0.035  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-C--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-W--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +|+.-|.+.....   .-.-.|++|+||||-.|--+-++++.. .  .|++.|+.|--                +...+.
T Consensus        28 RAa~KL~el~~k~---~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~   88 (205)
T COG0293          28 RAAYKLLELNEKF---KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVI   88 (205)
T ss_pred             hHHHHHHHHHHhc---CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCce
Confidence            4677777665554   133467999999999999999888883 3  49999998510                034577


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc------------CcccHHHHHHHHHHhccCC
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY------------SDDLTDALFHTLKRLMPLG  244 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY------------~~~~~~~L~~tl~~lL~~~  244 (335)
                      ..+.|..+.....          ...     +.-...++|+|++ |.--            ...+....+......|+++
T Consensus        89 ~iq~d~~~~~~~~----------~l~-----~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~  152 (205)
T COG0293          89 FLQGDITDEDTLE----------KLL-----EALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG  152 (205)
T ss_pred             EEeeeccCccHHH----------HHH-----HHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence            7888877752211          000     0001224688883 2221            1234556677778889988


Q ss_pred             Ccce
Q 019839          245 SKKV  248 (335)
Q Consensus       245 ~~~~  248 (335)
                      |..+
T Consensus       153 G~fv  156 (205)
T COG0293         153 GSFV  156 (205)
T ss_pred             CeEE
Confidence            8543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=83.71  E-value=7.1  Score=37.28  Aligned_cols=121  Identities=17%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec------cCCCCC--CCC-c
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL------NWMNPW--PPI-F  190 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l------dW~~~~--~~~-~  190 (335)
                      ...+||==|||+|-++.-+|..|..+-+-+.+--|+  +-.+..+|.....  ..+.+.+.      .|..+.  .+. .
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Ml--i~S~FiLN~~~~~--nq~~IYPfIh~~sn~~~~dDQlrpi~~  225 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFML--ICSSFILNYCKQE--NQFTIYPFIHQYSNSLSRDDQLRPISI  225 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccccccHHHHHHH--HHHHHHHHhhccC--CcEEEEeeeeccccccccccccccccC
Confidence            456899999999999999999998877777764443  4445555543321  22222221      111110  000 0


Q ss_pred             -------cCCC-------CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          191 -------SLGN-------SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       191 -------~~~~-------~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                             ..++       +.++.+.+.-    ....+.||+|+.+--|=-....-..++||..+|++||.-+
T Consensus       226 PD~~p~~~~~~~~~fsicaGDF~evy~~----s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  226 PDIHPASSNGNTGSFSICAGDFLEVYGT----SSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccccccccCCCCCCccccccceeEEecC----cCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence                   0000       1111111111    1123479999997222222344557899999999988433

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=82.98  E-value=2.5  Score=40.90  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          118 DFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+.+|+=+||| .||+.+.+|+. | ++|+++|.+++=++.+++
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            3445599999999 69999888887 3 789999999988888875

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=82.98  E-value=1.2  Score=42.77  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHH-------HHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILD-------NCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~-------~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .-.|+-|.|==.|||-+-+.+|+.|+.|++||++-.++.       +++.|.+.-+..   ..-+.+...|..+.
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~  277 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNP  277 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCc
Confidence            357899999999999888899999999999999976665       344555544422   23355566665554

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=82.19  E-value=19  Score=34.15  Aligned_cols=44  Identities=16%  Similarity=-0.056  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||=.|+| .|+..+.+|+. |++|++++.+++-++.+++
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~  207 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA  207 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence            34568999999976 45555555554 7789999998776666553

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=81.91  E-value=3.4  Score=37.37  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-C---CEEEEecCchHHHHHHHHHHHHc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-A---WTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~---~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      ...++-|=.||.|.+--+++.+ +   ..|+++|+++++|+.+++|+.+-
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL  100 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL  100 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence            3458999999999444333333 2   58999999999999999998754

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=80.82  E-value=2.2  Score=39.17  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CCeEEEEcCccCHHHHHHHHh-C---------CEEEEecCchHHHHHHHHHHH
Q 019839          121 GIISLELGAGTGLAGILLSRV-A---------WTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~-~---------~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      ..+|+|+|+|.|.+..-+.+. .         .++++.+.++.+.+.-++++.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            369999999999776555443 1         379999999877666655543

; PDB: 4F3N_A 1ZKD_B.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=80.15  E-value=3.7  Score=38.26  Aligned_cols=107  Identities=19%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             eEEEEcCc---cCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          123 ISLELGAG---TGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       123 ~VLELG~G---tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..||||||   .|-+--++-+.  .++|+-+|.+|-++...+.-+..|.     .+...+...|..+.......    ..
T Consensus        71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~----p~  141 (267)
T PF04672_consen   71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAH----PE  141 (267)
T ss_dssp             EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCS----HH
T ss_pred             eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcC----HH
Confidence            69999999   34443333333  5799999999999888877766654     34577788887665211100    00


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc---ccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD---DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~---~~~~~L~~tl~~lL~~~~~  246 (335)
                      ....+        ...+.=-|+...++++.   +....+++++...|.+|+.
T Consensus       142 ~~~~l--------D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~  185 (267)
T PF04672_consen  142 VRGLL--------DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY  185 (267)
T ss_dssp             HHCC----------TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred             HHhcC--------CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence            00001        11233356667777763   5688899999999998774

; PDB: 3GIW_A 3GO4_A 2QE6_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	7e-23

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 95.3 bits (236), Expect = 7e-23
 Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 29/202 (14%)

Query: 69  PRRSKQSTRCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELG 128
            R    +      ++Q   T   P     VW     LAD +  +        G    ELG
Sbjct: 31  ERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQ---PELIAGKTVCELG 87

Query: 129 AGTGLAGILLSRV-AWTVFLTDHGN-YILDNCAKNVQLN-----SGVFSHQGSVHVRDLN 181
           AG GL  I+     A  V  TD+ +  IL++   N++ +     S     + S  V    
Sbjct: 88  AGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYR 147

Query: 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM 241
           W +    +                      +QR  V+L AD++      DAL  ++K L+
Sbjct: 148 WGDSPDSLQ-----------------RCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLL 190

Query: 242 PLGSKKVLVNMVLYLALEKRYN 263
            L +       V  +       
Sbjct: 191 ALPANDPTA--VALVTFTHHRP 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.86
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.44
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.4
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.4
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.39
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.38
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.37
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.37
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.35
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.35
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.35
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.35
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.35
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.35
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.34
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.34
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.34
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.34
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.34
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.33
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.33
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.33
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.33
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.33
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.32
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.32
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.32
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.32
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.32
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.32
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.31
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.31
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.31
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.31
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.3
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.3
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.3
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.29
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.28
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.28
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.27
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.27
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.27
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.27
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.27
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.26
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.26
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.26
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.26
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.26
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.26
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.24
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.24
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.24
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.23
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.23
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.23
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.23
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.22
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.22
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.22
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.22
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.22
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.21
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.2
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.2
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.2
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.19
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.19
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.19
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.19
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.18
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.18
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.18
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.18
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.18
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.18
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.18
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.17
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.17
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.17
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.16
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.16
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.16
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.16
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.15
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.14
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.14
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.14
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.14
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.13
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.13
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.13
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.13
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.12
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.11
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.11
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.11
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.1
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.1
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.1
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.1
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.09
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.09
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.09
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.08
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.08
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.08
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.07
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.07
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.07
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.07
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.07
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.06
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.05
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.05
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.04
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.04
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.03
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.03
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.03
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.03
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.02
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.02
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.01
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.01
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.01
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.01
3ocj_A	305	Putative exported protein; structural genomics, PS	99.01
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.01
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.01
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.0
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.99
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.99
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.99
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.98
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.98
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.98
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.98
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.98
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.98
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.97
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.97
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.97
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.97
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.97
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.96
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.96
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.96
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.95
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.95
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.95
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.95
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.95
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.95
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.95
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.94
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.94
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.94
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.93
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.92
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.92
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.92
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.92
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.9
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.9
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.9
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.89
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.88
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.88
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.88
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.88
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.87
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.86
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.85
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.84
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.84
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.83
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.83
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.83
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.83
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.82
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.82
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.82
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.81
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.81
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.8
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.8
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.79
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.78
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.77
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.77
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.77
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.77
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.77
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.76
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.76
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.75
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.72
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.7
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.69
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.68
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.67
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.67
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.66
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.65
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.65
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.64
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.63
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.63
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.62
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.62
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.62
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.62
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.62
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.61
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.6
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.59
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.58
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.58
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.58
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.57
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.57
2o07_A	304	Spermidine synthase; structural genomics, structur	98.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.54
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.53
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.51
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.49
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.49
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.48
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.48
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.47
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.46
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.45
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.44
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.43
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.43
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.42
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.38
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.38
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.35
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.32
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.3
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.28
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.23
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.22
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.21
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.21
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.2
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.17
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.14
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.13
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.12
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.11
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.04
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.02
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.02
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.92
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.9
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.85
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.84
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.73
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.67
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.64
3lkd_A	542	Type I restriction-modification system methyltrans	97.52
3khk_A	544	Type I restriction-modification system methylation	97.44
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.42
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.32
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.31
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.82
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.79
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.71
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.38
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.24
3ufb_A	530	Type I restriction-modification system methyltran	95.75
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.17
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.16
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.12
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	94.88
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.48
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.67
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	93.38
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	92.76
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.74
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	92.68
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	92.22
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	91.88
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	91.88
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	91.51
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.54
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	89.93
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.58
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.57
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	88.87
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	88.69
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.57
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.22
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.85
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.73
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.61
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	86.38
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	86.27
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	86.09
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	85.88
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.52
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	85.48
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.23
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	84.73
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	84.69
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	84.51
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.15
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	84.11
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	84.08
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.03
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	83.42
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.31
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	83.17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	82.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	82.86
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	82.53
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.27
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	82.22
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	82.12
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	81.56
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	81.5
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	81.36
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	81.08
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	81.03
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.48
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	80.3
3gms_A	340	Putative NADPH:quinone reductase; structural genom	80.24
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	80.11

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.86  E-value=2e-20  Score=173.69  Aligned_cols=196  Identities=21%  Similarity=0.257  Sum_probs=123.4

Q ss_pred             cCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecC-chHHHHHHHHHHHHcc
Q 019839           89 SLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDH-GNYILDNCAKNVQLNS  166 (335)
Q Consensus        89 ~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~-~~~~l~~~~~Nv~~N~  166 (335)
                      .....+|..+|+++..|++++....   ...++++|||||||+|..++.+++.+. +|+++|+ ++.+++.++.|+..|.
T Consensus        51 g~~~~~g~~~~~~~~~l~~~l~~~~---~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~  127 (281)
T 3bzb_A           51 QEHPLWTSHVWSGARALADTLCWQP---ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHT  127 (281)
T ss_dssp             -----------CHHHHHHHHHHHCG---GGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCceeecHHHHHHHHHHhcc---hhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhh
Confidence            3456789999999999999999863   456889999999999999999999876 9999999 8999999999996663


Q ss_pred             CCCCCC-----CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhh--ccCCccEEEEeccccCcccHHHHHHHHHH
Q 019839          167 GVFSHQ-----GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELK--EVQRASVLLAADVIYSDDLTDALFHTLKR  239 (335)
Q Consensus       167 ~~~~~~-----~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~fDlIlasDviY~~~~~~~L~~tl~~  239 (335)
                      ......     .++.+..++|++.....                   ..  ..++||+|+++|++|+.+....+++++.+
T Consensus       128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------------~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~  188 (281)
T 3bzb_A          128 ANSCSSETVKRASPKVVPYRWGDSPDSL-------------------QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKM  188 (281)
T ss_dssp             C----------CCCEEEECCTTSCTHHH-------------------HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHH
T ss_pred             hhhcccccCCCCCeEEEEecCCCccHHH-------------------HhhccCCCCCEEEEeCcccChHHHHHHHHHHHH
Confidence            211101     37889999999852110                   00  13589999999999999999999999999


Q ss_pred             hcc---C--CCcceeeceEEEEEEeeeccccccchhhhhhhhhHHHHHHhhhhcccccccccCCC-eeeEEec-CCCCCc
Q 019839          240 LMP---L--GSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPA-FVGKCID-LNEFPQ  312 (335)
Q Consensus       240 lL~---~--~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~-f~v~~i~-~~~~pq  312 (335)
                      +|+   +  +|  .     +|+++..+.....       .....|...+.+            .| |.++++. ....+.
T Consensus       189 ~Lk~~~p~~gG--~-----l~v~~~~~~~~~~-------~~~~~~~~~l~~------------~G~f~v~~~~~~~~~~~  242 (281)
T 3bzb_A          189 LLALPANDPTA--V-----ALVTFTHHRPHLA-------ERDLAFFRLVNA------------DGALIAEPWLSPLQMDP  242 (281)
T ss_dssp             HBCCTTTCTTC--E-----EEEEECC---------------CTHHHHHHHH------------STTEEEEEEECCC----
T ss_pred             HhcccCCCCCC--E-----EEEEEEeeecccc-------hhHHHHHHHHHh------------cCCEEEEEecccccccc
Confidence            999   8  65  3     5555544432111       112334443332            47 8777772 222333


Q ss_pred             cccccCCC-----CceEEEEEEeccC
Q 019839          313 YVREYDRG-----NDVELWQIKRSEN  333 (335)
Q Consensus       313 ~~~~yer~-----~~lelw~i~~~~~  333 (335)
                      .| ++.+.     ..+.+|++++...
T Consensus       243 ~f-~~~~~~~~~r~~V~~~~l~~~~~  267 (281)
T 3bzb_A          243 MF-PDDPGDVCIRGQVHRWRLRWRSA  267 (281)
T ss_dssp             ---------------CEEEEEEEC--
T ss_pred             cc-ccCCcchhccceEEEEEEEcccc
Confidence            33 33332     3788999998653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.44  E-value=3.4e-13  Score=129.95  Aligned_cols=113  Identities=16%  Similarity=0.271  Sum_probs=94.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|++|||||||+|++|+.+|+.| ++|++.|.++ +++.++++++.|+.    ..++.+...+..+..         
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~----~~~i~~i~~~~~~~~---------  145 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL----EDRVHVLPGPVETVE---------  145 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC----TTTEEEEESCTTTCC---------
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC----CceEEEEeeeeeeec---------
Confidence            45899999999999999999999997 5899999985 88999999999986    467888887755431         


Q ss_pred             CccccccccCcchhhccCCccEEEE---eccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLA---ADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIla---sDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                     ..+++|+||+   ...+.+....+.++....++|+|+|..+...-++|++.
T Consensus       146 ---------------lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~ap  196 (376)
T 4hc4_A          146 ---------------LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVP  196 (376)
T ss_dssp             ---------------CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred             ---------------CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEE
Confidence                           2358999998   66777788999999999999999987665566677765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.40  E-value=2.2e-12  Score=116.42  Aligned_cols=113  Identities=12%  Similarity=0.012  Sum_probs=92.7

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ..+++....   ...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++.    ..++.+...|+.
T Consensus        24 ~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v~~~~~d~~   96 (256)
T 1nkv_A           24 KYATLGRVL---RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIHNDAA   96 (256)
T ss_dssp             HHHHHHHHT---CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCCT
T ss_pred             HHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECChH
Confidence            344444443   4467889999999999999998876 78999999999999999999987763    246888888887


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +...                        .+.||+|++..++++......+++.+.++|+|||..+
T Consensus        97 ~~~~------------------------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~  137 (256)
T 1nkv_A           97 GYVA------------------------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML  137 (256)
T ss_dssp             TCCC------------------------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred             hCCc------------------------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEE
Confidence            6421                        3479999999999998888999999999999988654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.40  E-value=2.5e-12  Score=115.52  Aligned_cols=115  Identities=9%  Similarity=-0.014  Sum_probs=95.1

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      -|+.+..+.+.+       ...++.+|||+|||+|..++.++..+.+|+++|+++.+++.+++++..++     ..++.+
T Consensus         6 ~~~~~~~~~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~   73 (239)
T 1xxl_A            6 HHHSLGLMIKTA-------ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-----VENVRF   73 (239)
T ss_dssp             CHHHHHHHHHHH-------TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT-----CCSEEE
T ss_pred             cCCCcchHHHHh-------CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC-----CCCeEE
Confidence            356666666655       44678999999999999999999998999999999999999999998876     346788


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ...|+.+...                       ..+.||+|+++.++++......+++.+.++|+++|..
T Consensus        74 ~~~d~~~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           74 QQGTAESLPF-----------------------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  120 (239)
T ss_dssp             EECBTTBCCS-----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             EecccccCCC-----------------------CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEE
Confidence            8887754310                       2358999999999999999999999999999998854

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.39  E-value=1.9e-11  Score=107.63  Aligned_cols=99  Identities=10%  Similarity=0.108  Sum_probs=79.8

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...++.+|||||||+|..++.+|+.+.+|+++|+++.+++.+++|++.++.    ..++.+...|..+..          
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~~----------  117 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGL----SPRMRAVQGTAPAAL----------  117 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCTTGGG----------
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCEEEEeCchhhhc----------
Confidence            345788999999999999999999999999999999999999999998873    236888877765421          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                   .....||+|++...+    ..+ +++.+.++|+++|..
T Consensus       118 -------------~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~l  150 (204)
T 3njr_A          118 -------------ADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRI  150 (204)
T ss_dssp             -------------TTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEE
T ss_pred             -------------ccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEE
Confidence                         122479999976543    345 999999999998853

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.38  E-value=6.8e-12  Score=112.02  Aligned_cols=112  Identities=10%  Similarity=0.045  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      ..+.+++...     .+++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.++..+..    ..++.+...|+
T Consensus        54 ~~l~~~~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~  124 (235)
T 3lcc_A           54 PLIVHLVDTS-----SLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK----AEYFSFVKEDV  124 (235)
T ss_dssp             HHHHHHHHTT-----CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG----GGGEEEECCCT
T ss_pred             HHHHHHHHhc-----CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC----CcceEEEECch
Confidence            3455565432     24556999999999999999998889999999999999999999876432    35688888888


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                      .+..+                        ..+||+|++..++++.+  ....+++.+.++|+++|..
T Consensus       125 ~~~~~------------------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  167 (235)
T 3lcc_A          125 FTWRP------------------------TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGEL  167 (235)
T ss_dssp             TTCCC------------------------SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             hcCCC------------------------CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEE
Confidence            76421                        23899999999999876  8899999999999998753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.37  E-value=3.4e-12  Score=110.46  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++++|||||||+|..++.++..+ .+|+++|+++.+++.+++|+..|+.     .++.+...|+.+...          
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~----------  107 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-----SGATLRRGAVAAVVA----------  107 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-----SCEEEEESCHHHHHH----------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEccHHHHHh----------
Confidence            688999999999999999777775 5899999999999999999999873     467888777654310          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHH--hccCCCcceeeceEEEEEEeeecc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKR--LMPLGSKKVLVNMVLYLALEKRYN  263 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~--lL~~~~~~~~~~p~i~ia~~~R~~  263 (335)
                                 ....++||+|++...++.. +....+++.+.+  +|+|+|  .     +++....+..
T Consensus       108 -----------~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG--~-----l~~~~~~~~~  158 (189)
T 3p9n_A          108 -----------AGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGT--V-----AVVERATTCA  158 (189)
T ss_dssp             -----------HCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTC--E-----EEEEEETTSC
T ss_pred             -----------hccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCe--E-----EEEEecCCCC
Confidence                       0013589999997665443 678889999999  999987  3     5555554433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.37  E-value=6.6e-12  Score=114.39  Aligned_cols=122  Identities=14%  Similarity=0.061  Sum_probs=99.4

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      .+..+...+.+.+....   ...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++.++..++.    ..++
T Consensus        41 ~~~~~~~~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~  113 (273)
T 3bus_A           41 SVDDATDRLTDEMIALL---DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL----ANRV  113 (273)
T ss_dssp             CHHHHHHHHHHHHHHHS---CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE
T ss_pred             CHHHHHHHHHHHHHHhc---CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC----Ccce
Confidence            34455666777777764   4457899999999999999999875 78999999999999999999987763    3468


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+...|+.+...                       ..++||+|++.+++++......+++.+.++|+|+|..+
T Consensus       114 ~~~~~d~~~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  163 (273)
T 3bus_A          114 TFSYADAMDLPF-----------------------EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVA  163 (273)
T ss_dssp             EEEECCTTSCCS-----------------------CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEECccccCCC-----------------------CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEE
Confidence            888888765311                       13489999999999999889999999999999988544

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.35  E-value=6.8e-12  Score=113.18  Aligned_cols=115  Identities=10%  Similarity=0.008  Sum_probs=91.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+...++...  ....++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..++.    ..++.+...|+
T Consensus        32 ~~~~~~l~~l--~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  105 (257)
T 3f4k_A           32 EATRKAVSFI--NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC----ADRVKGITGSM  105 (257)
T ss_dssp             HHHHHHHTTS--CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCT
T ss_pred             HHHHHHHHHH--hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECCh
Confidence            3444444432  2345678999999999999999999854 999999999999999999988764    34588888888


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+...                       ..++||+|++..++++. ....+++.+.++|+|+|..+
T Consensus       106 ~~~~~-----------------------~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~  147 (257)
T 3f4k_A          106 DNLPF-----------------------QNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIA  147 (257)
T ss_dssp             TSCSS-----------------------CTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEE
T ss_pred             hhCCC-----------------------CCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEE
Confidence            54311                       23589999999999998 68889999999999988544

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.35  E-value=1.4e-11  Score=108.36  Aligned_cols=102  Identities=16%  Similarity=0.072  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..++.+|||+|||+|..++.+++.+   .+|+++|+++.+++.++.++..++     ..++.+...|+.+...       
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-------  102 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENKIPL-------  102 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-----CTTEEEEECBTTBCSS-------
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEecccccCCC-------
Confidence            3578899999999999999999886   799999999999999999998876     2468888888765311       


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                      ..++||+|+++.++++......+++.+.++|+++|..
T Consensus       103 ----------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  139 (219)
T 3dh0_A          103 ----------------PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYL  139 (219)
T ss_dssp             ----------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEE
Confidence                            2347999999999999999999999999999998743

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.35  E-value=2.6e-12  Score=117.06  Aligned_cols=122  Identities=14%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCC-CCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDF-NGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~-~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      .|.+..-.+.+|+.|+       ..- ++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..|+.    
T Consensus        29 ~~~~~~~d~~ll~~~~-------~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~----   97 (259)
T 3lpm_A           29 SVFSFSIDAVLLAKFS-------YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL----   97 (259)
T ss_dssp             TTBCCCHHHHHHHHHC-------CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC----
T ss_pred             CCccCcHHHHHHHHHh-------cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC----
Confidence            3556666788898885       223 688999999999999999998865 999999999999999999999874    


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------------ccHH
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------DLTD  231 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------------~~~~  231 (335)
                      ..++.+...|+.+....                     ...++||+|++...++..                    ...+
T Consensus        98 ~~~v~~~~~D~~~~~~~---------------------~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~  156 (259)
T 3lpm_A           98 EDQIEIIEYDLKKITDL---------------------IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLE  156 (259)
T ss_dssp             TTTEEEECSCGGGGGGT---------------------SCTTCEEEEEECCCC-----------------------HHHH
T ss_pred             cccEEEEECcHHHhhhh---------------------hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHH
Confidence            34688888877654210                     013589999997766554                    2356


Q ss_pred             HHHHHHHHhccCCCcc
Q 019839          232 ALFHTLKRLMPLGSKK  247 (335)
Q Consensus       232 ~L~~tl~~lL~~~~~~  247 (335)
                      .+++.+.++|+++|..
T Consensus       157 ~~l~~~~~~LkpgG~l  172 (259)
T 3lpm_A          157 DTIRVAASLLKQGGKA  172 (259)
T ss_dssp             HHHHHHHHHEEEEEEE
T ss_pred             HHHHHHHHHccCCcEE
Confidence            7999999999998743

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.35  E-value=3.8e-11  Score=112.18  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=91.5

Q ss_pred             HHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          107 DFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       107 ~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      +++....  ....++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+.
T Consensus       106 ~~l~~~l--~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~  179 (312)
T 3vc1_A          106 EFLMDHL--GQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI----DDHVRSRVCNMLDT  179 (312)
T ss_dssp             HHHHTTS--CCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSC
T ss_pred             HHHHHHh--ccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhcC
Confidence            4455443  12457889999999999999999988 89999999999999999999998864    34788888887653


Q ss_pred             CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .-                       ..++||+|++.+++++.+ ...+++.+.++|+|||..+
T Consensus       180 ~~-----------------------~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~  218 (312)
T 3vc1_A          180 PF-----------------------DKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYV  218 (312)
T ss_dssp             CC-----------------------CTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEE
T ss_pred             CC-----------------------CCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEE
Confidence            10                       135899999999999885 8999999999999988543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.35  E-value=3.7e-11  Score=106.28  Aligned_cols=106  Identities=11%  Similarity=0.038  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..+........++.+...|......           
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------   97 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----------   97 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----------
Confidence            367899999999999999999999999999999999999999987665322113467777777654311           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHH---HHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTD---ALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~---~L~~tl~~lL~~~~~~  247 (335)
                                  ..++||+|+++.++++....+   .+++.+.++|+++|..
T Consensus        98 ------------~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l  137 (235)
T 3sm3_A           98 ------------HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL  137 (235)
T ss_dssp             ------------CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ------------CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEE
Confidence                        235899999999999987766   8999999999998743

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.35  E-value=8.4e-12  Score=113.12  Aligned_cols=102  Identities=12%  Similarity=0.005  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++     ..++.+...|..+..-           
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~l~~-----------   99 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQMPF-----------   99 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-CCCS-----------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHHhCCC-----------
Confidence            478899999999999999999998899999999999999999998775     2467787777655310           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..+.||+|+++.++++......+++.+.++|+|+|..+
T Consensus       100 ------------~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A          100 ------------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             ------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ------------CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEE
Confidence                        13589999999999999999999999999999988543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.34  E-value=9.5e-12  Score=107.49  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=85.2

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..+..     .++.+...|+.+..           
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~-----------   93 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNLT-----------   93 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECCGGGCC-----------
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-----CCcEEEEcchhhCC-----------
Confidence            35778999999999999999999999999999999999999999987762     35777777765531           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                                   ..++||+|+++.++++..  ....+++.+.++|+++|..
T Consensus        94 -------------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l  132 (199)
T 2xvm_A           94 -------------FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN  132 (199)
T ss_dssp             -------------CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             -------------CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence                         134899999999998865  7889999999999998753

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.34  E-value=2.3e-11  Score=111.57  Aligned_cols=99  Identities=15%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      -+|.+|||||||+|..++.+++.    +.+|+++|+++.|++.+++++...+.    ..++.+...|..+.         
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v~~~~~D~~~~---------  135 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDI---------  135 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCTTTC---------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceEEEeecccccc---------
Confidence            47889999999999999999886    46999999999999999999876543    35788888776543         


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~  246 (335)
                                      ..++||+|++..++++..  ....+++.+.++|+|||.
T Consensus       136 ----------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~  173 (261)
T 4gek_A          136 ----------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGA  173 (261)
T ss_dssp             ----------------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ----------------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcE
Confidence                            124799999999998754  345789999999999884

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.34  E-value=4.4e-12  Score=111.56  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      -|-....+..++....   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..+       .++.+
T Consensus        32 ~~~~~~~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~  101 (216)
T 3ofk_A           32 NPFERERHTQLLRLSL---SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW-------SHISW  101 (216)
T ss_dssp             CHHHHHHHHHHHHHHT---TTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC-------SSEEE
T ss_pred             CHhHHHHHHHHHHHHc---ccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC-------CCeEE
Confidence            4444455566665443   3457789999999999999999999999999999999999999887643       36888


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccH---HHHHHHHHHhccCCCc
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT---DALFHTLKRLMPLGSK  246 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~---~~L~~tl~~lL~~~~~  246 (335)
                      ...|+.+..                        ..++||+|+++.++++....   ..+++.+.++|+++|.
T Consensus       102 ~~~d~~~~~------------------------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~  149 (216)
T 3ofk_A          102 AATDILQFS------------------------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGH  149 (216)
T ss_dssp             EECCTTTCC------------------------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             EEcchhhCC------------------------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCE
Confidence            888876652                        13589999999999987765   4669999999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.34  E-value=4.6e-11  Score=105.34  Aligned_cols=118  Identities=14%  Similarity=0.068  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      .....+++....   ...++++|||+|||+|..+..+++.+  .+|+++|+++.+++.+++|+..+........++.+..
T Consensus        14 ~~~~~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (219)
T 3jwg_A           14 NQQRLGTVVAVL---KSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ   90 (219)
T ss_dssp             HHHHHHHHHHHH---HHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred             hHHHHHHHHHHH---hhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence            333444544432   22567899999999999999999876  6999999999999999999877653100012678888


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCC
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGS  245 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~  245 (335)
                      .|+....                       ...++||+|++.+++++....  ..+++.+.++|+++|
T Consensus        91 ~d~~~~~-----------------------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  135 (219)
T 3jwg_A           91 SSLVYRD-----------------------KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT  135 (219)
T ss_dssp             CCSSSCC-----------------------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred             Ccccccc-----------------------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE
Confidence            8764321                       123589999999999998744  789999999999976

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.34  E-value=1.3e-11  Score=105.70  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..++..   ..++.+...|+.+..+           
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~-----------  116 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLD---NYDIRVVHSDLYENVK-----------  116 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTTTTCT-----------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECchhcccc-----------
Confidence            47889999999999999999988899999999999999999999887631   1138888888776421           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~~  246 (335)
                                   .++||+|++..++++ ......+++.+.++|+++|.
T Consensus       117 -------------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  152 (194)
T 1dus_A          117 -------------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGE  152 (194)
T ss_dssp             -------------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEE
T ss_pred             -------------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCE
Confidence                         247999999877665 46778899999999999874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.33  E-value=4.8e-12  Score=114.35  Aligned_cols=119  Identities=11%  Similarity=0.108  Sum_probs=96.0

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      .+++....+++.++...   ...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++.++..+       .++
T Consensus        35 ~~~~~~~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~  104 (266)
T 3ujc_A           35 YISSGGLEATKKILSDI---ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------NKI  104 (266)
T ss_dssp             CCSTTHHHHHHHHTTTC---CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------TTE
T ss_pred             ccccchHHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------CCe
Confidence            35566666777777664   4457889999999999999999987 899999999999999998776443       367


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+...|+.+...                       ..++||+|++.+++++.  .....+++.+.++|+|+|..+
T Consensus       105 ~~~~~d~~~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  156 (266)
T 3ujc_A          105 IFEANDILTKEF-----------------------PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLL  156 (266)
T ss_dssp             EEEECCTTTCCC-----------------------CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEECccccCCC-----------------------CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEE
Confidence            788887765411                       13589999999999998  889999999999999988544

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.33  E-value=4.1e-11  Score=106.47  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -++.+|||+||| +|..++.+++. +.+|+++|+++.+++.+++|+..|+     . ++.+...|+....+         
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~~~~---------  118 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGGIIKG---------  118 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSCSSTT---------
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCchhhhh---------
Confidence            478999999999 99999999998 8999999999999999999999986     2 67888888643211         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcc-------------------cHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD-------------------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-------------------~~~~L~~tl~~lL~~~~~~  247 (335)
                                  . ..++||+|++...++...                   ....+++.+.++|+++|..
T Consensus       119 ------------~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  175 (230)
T 3evz_A          119 ------------V-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKV  175 (230)
T ss_dssp             ------------T-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEE
T ss_pred             ------------c-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEE
Confidence                        0 125899999765544322                   2478899999999998753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.33  E-value=3.8e-11  Score=108.20  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ...++++|||||||+|..++.+++.+. +|+++|+++.+++.+++++.        ..++.+...|..+...        
T Consensus        41 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~--------  104 (253)
T 3g5l_A           41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAI--------  104 (253)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCC--------
T ss_pred             hccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCC--------
Confidence            345889999999999999999999987 99999999999999988765        1457777777654311        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ..++||+|+++.++++.+....+++.+.++|+++|..+
T Consensus       105 ---------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  142 (253)
T 3g5l_A          105 ---------------EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFI  142 (253)
T ss_dssp             ---------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEE
Confidence                           13589999999999999999999999999999988544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.33  E-value=1.4e-11  Score=108.75  Aligned_cols=113  Identities=15%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ...+.+.+....     -.+.+|||||||+|..++.+++.+.+|+++|+++.+++.+++|+..+.      .++.+...|
T Consensus        25 ~~~~~~~l~~~~-----~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d   93 (227)
T 1ve3_A           25 IETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGD   93 (227)
T ss_dssp             HHHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECC
T ss_pred             HHHHHHHHHHhc-----CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEECc
Confidence            444555565542     237899999999999999999998899999999999999999998775      457777777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecc--ccCcccHHHHHHHHHHhccCCCcce
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADV--IYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDv--iY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..+...                       ..++||+|++.++  +++......+++.+.++|+++|..+
T Consensus        94 ~~~~~~-----------------------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~  139 (227)
T 1ve3_A           94 ARKLSF-----------------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  139 (227)
T ss_dssp             TTSCCS-----------------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcCCC-----------------------CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            665310                       1248999999999  7777778899999999999988543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.33  E-value=8.6e-12  Score=109.10  Aligned_cols=112  Identities=14%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+++.+....   . .++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++.|+..++.    ..++.+...|+
T Consensus        31 ~~~~~~~~~~---~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  102 (219)
T 3dlc_A           31 IIAENIINRF---G-ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL----NDRIQIVQGDV  102 (219)
T ss_dssp             HHHHHHHHHH---C-CCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECBT
T ss_pred             HHHHHHHHhc---C-CCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc----cCceEEEEcCH
Confidence            3455555543   2 23349999999999999999987 67999999999999999999988764    35688888887


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      .+...                       ..++||+|++..++++......+++.+.++|+|+|.
T Consensus       103 ~~~~~-----------------------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  143 (219)
T 3dlc_A          103 HNIPI-----------------------EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGK  143 (219)
T ss_dssp             TBCSS-----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             HHCCC-----------------------CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence            65311                       235899999999999999999999999999999874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.32  E-value=8.8e-12  Score=113.55  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=87.3

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++++..++.    ..++.+...|+.+...         
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~---------  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVGSMDDLPF---------  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCC---------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCcEEEEcChhhCCC---------
Confidence            4578999999999999999999885 4999999999999999999988764    3568999988865421         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|++..++++. ....+++.+.++|+|+|..+
T Consensus       111 --------------~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~  147 (267)
T 3kkz_A          111 --------------RNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLA  147 (267)
T ss_dssp             --------------CTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEE
T ss_pred             --------------CCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEE
Confidence                          13589999999999998 67889999999999988554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.32  E-value=3.1e-11  Score=105.45  Aligned_cols=100  Identities=10%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...++.+|||+|||+|..++.+++.+  .+|+++|+++.+++.+++|+..++     ..++.+...|+.+..+       
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~-------  104 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-----ARNVTLVEAFAPEGLD-------  104 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-----CTTEEEEECCTTTTCT-------
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeCChhhhhh-------
Confidence            34578899999999999999999987  899999999999999999999886     3568888887755421       


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                      ....||+|++..+++   ....+++.+.++|+++|..
T Consensus       105 ----------------~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l  138 (204)
T 3e05_A          105 ----------------DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVI  138 (204)
T ss_dssp             ----------------TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEE
T ss_pred             ----------------cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEE
Confidence                            124799999987776   6778999999999998853

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.32  E-value=2.4e-11  Score=111.68  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .+...+.+.++...   ...++.+|||+|||+|..++.++ +.+.+|+++|+++.+++.+++++..++.    ..++.+.
T Consensus        47 ~a~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~~~~  119 (287)
T 1kpg_A           47 EAQIAKIDLALGKL---GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN----LRSKRVL  119 (287)
T ss_dssp             HHHHHHHHHHHTTT---TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEE
T ss_pred             HHHHHHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----CCCeEEE
Confidence            34445666666653   44578899999999999999988 5588999999999999999999886653    3467777


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|+.+.                          .++||+|++.+++++.  +....+++.+.++|+|+|..+
T Consensus       120 ~~d~~~~--------------------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  165 (287)
T 1kpg_A          120 LAGWEQF--------------------------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML  165 (287)
T ss_dssp             ESCGGGC--------------------------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             ECChhhC--------------------------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEE
Confidence            7776432                          1489999999999987  678999999999999998654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.32  E-value=3.4e-11  Score=102.22  Aligned_cols=99  Identities=12%  Similarity=0.124  Sum_probs=77.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.++.|+..++.    ..++ +...|..+.         
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~d~~~~---------   87 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV----SDRI-AVQQGAPRA---------   87 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE-EEECCTTGG---------
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE-EEecchHhh---------
Confidence            3457889999999999999999988  67999999999999999999988763    2256 555554332         


Q ss_pred             CCccccccccCcchhhcc-CCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~-~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    .... ++||+|+++.++++    ..+++.+.++|+++|..
T Consensus        88 --------------~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l  123 (178)
T 3hm2_A           88 --------------FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRL  123 (178)
T ss_dssp             --------------GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEE
T ss_pred             --------------hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEE
Confidence                          1111 58999999999887    67889999999998843

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.32  E-value=1e-11  Score=120.04  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      +.+.+..|.+.+..... ....++.+|||||||+|..++.+++.+.+|+++|+++.+++.+++|+..|+.      .+.+
T Consensus       212 ~d~~t~~ll~~l~~~l~-~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~------~v~~  284 (381)
T 3dmg_A          212 VDPASLLLLEALQERLG-PEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL------KAQA  284 (381)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC------CCEE
T ss_pred             CCHHHHHHHHHHHHhhc-ccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC------CeEE
Confidence            45677778888766430 1235788999999999999999999999999999999999999999999863      3677


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC-----cccHHHHHHHHHHhccCCCc
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-----~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ...|+.+...                       ..++||+|++..++++     ......+++.+.++|+++|.
T Consensus       285 ~~~D~~~~~~-----------------------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~  335 (381)
T 3dmg_A          285 LHSDVDEALT-----------------------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV  335 (381)
T ss_dssp             EECSTTTTSC-----------------------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEE
T ss_pred             EEcchhhccc-----------------------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcE
Confidence            7777765421                       1258999999888877     56778899999999999874

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.32  E-value=1.1e-11  Score=114.07  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++.    ..++.+...|+.+..+           
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~-----------  131 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV----SDNMQFIHCAAQDVAS-----------  131 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC----GGGEEEEESCGGGTGG-----------
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEEcCHHHhhh-----------
Confidence            3478999999999999999999999999999999999999999987653    2578888888765421           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...++||+|++..++++.+....+++.+.++|+|+|..
T Consensus       132 -----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  169 (285)
T 4htf_A          132 -----------HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVL  169 (285)
T ss_dssp             -----------GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             -----------hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEE
Confidence                       12358999999999999999999999999999998743

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.31  E-value=2.7e-11  Score=112.49  Aligned_cols=111  Identities=13%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ..+.+....   ...+|.+|||||||+|..++.+++. +.+|+++|+++.+++.+++++..++.    ..++.+...|+.
T Consensus        60 ~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~  132 (302)
T 3hem_A           60 KRKLALDKL---NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWE  132 (302)
T ss_dssp             HHHHHHHTT---CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC----SSCEEEEECCGG
T ss_pred             HHHHHHHHc---CCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCHH
Confidence            445555543   4457889999999999999999988 89999999999999999999988764    347888887765


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +.                          .++||+|++..++++.         .....+++.+.++|+|+|..+
T Consensus       133 ~~--------------------------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~  180 (302)
T 3hem_A          133 EF--------------------------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML  180 (302)
T ss_dssp             GC--------------------------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEE
T ss_pred             Hc--------------------------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence            42                          2489999999999887         445899999999999998654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.31  E-value=1.9e-11  Score=112.99  Aligned_cols=121  Identities=14%  Similarity=0.092  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHhhcC-CCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMC-TSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~-~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      +...+.+.+..... .....++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++.    ..++.+.
T Consensus        62 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~  137 (297)
T 2o57_A           62 ASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVK  137 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEE
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEE
Confidence            34444455554420 002357889999999999999999887 88999999999999999999877653    3568888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|+.+...                       ..++||+|++.+++++......+++.+.++|+|+|..+
T Consensus       138 ~~d~~~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  184 (297)
T 2o57_A          138 YGSFLEIPC-----------------------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  184 (297)
T ss_dssp             ECCTTSCSS-----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCcccCCC-----------------------CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence            888766411                       13489999999999998889999999999999988544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.31  E-value=1.4e-11  Score=105.87  Aligned_cols=115  Identities=9%  Similarity=-0.022  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ...++..+...    ...+|.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..++.     .++.+...+
T Consensus         8 ~~~~~~~~l~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~~   78 (185)
T 3mti_A            8 PIHMSHDFLAE----VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-----ENTELILDG   78 (185)
T ss_dssp             HHHHHHHHHHT----TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEEESC
T ss_pred             HHHHHHHHHHH----hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCc
Confidence            34455555443    335789999999999999999999999999999999999999999998763     456666533


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc---------CcccHHHHHHHHHHhccCCCcc
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY---------SDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY---------~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      .....                      ....++||+|+++-...         .......+++.+.++|+|||..
T Consensus        79 ~~~l~----------------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  131 (185)
T 3mti_A           79 HENLD----------------------HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRL  131 (185)
T ss_dssp             GGGGG----------------------GTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHH----------------------hhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEE
Confidence            32210                      00134799998762221         2244567789999999998754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.31  E-value=4.8e-11  Score=104.27  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=89.5

Q ss_pred             eehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      .++.+..+.+++....     .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..++.     .++.
T Consensus        43 ~~~~~~~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~  112 (205)
T 3grz_A           43 NHQTTQLAMLGIERAM-----VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI-----YDIA  112 (205)
T ss_dssp             CHHHHHHHHHHHHHHC-----SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CCCE
T ss_pred             CCccHHHHHHHHHHhc-----cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceE
Confidence            4677777888876652     4678999999999999999998865 999999999999999999998863     3488


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      +...|+.+..                         .++||+|++..++.   ....+++.+.++|+++|.
T Consensus       113 ~~~~d~~~~~-------------------------~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~  154 (205)
T 3grz_A          113 LQKTSLLADV-------------------------DGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQ  154 (205)
T ss_dssp             EEESSTTTTC-------------------------CSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEE
T ss_pred             EEeccccccC-------------------------CCCceEEEECCcHH---HHHHHHHHHHHhcCCCCE
Confidence            8888876541                         24899999976553   357788889999999874

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.30  E-value=1.1e-11  Score=113.35  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .+..+.+++....   ...++.+|||||||+|..+..+++.  +.+|+++|+++.+++.++.++..++     ..++.+.
T Consensus        21 ~~~~l~~~l~~~~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~   92 (276)
T 3mgg_A           21 QAETLEKLLHHDT---VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-----IKNVKFL   92 (276)
T ss_dssp             --CHHHHHHHTTC---CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEE
T ss_pred             HHHHHHHHHhhcc---cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEE
Confidence            3445666666542   4457899999999999999999988  6799999999999999999998876     3467777


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|..+...                       ..++||+|+++.++++......+++.+.++|+|+|..+
T Consensus        93 ~~d~~~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  139 (276)
T 3mgg_A           93 QANIFSLPF-----------------------EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTIT  139 (276)
T ss_dssp             ECCGGGCCS-----------------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             EcccccCCC-----------------------CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEE
Confidence            777654311                       23589999999999999999999999999999988543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.30  E-value=4e-11  Score=112.06  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      ...+.+.+....   ...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++.    ..++.+...
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~  147 (318)
T 2fk8_A           75 QYAKVDLNLDKL---DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQ  147 (318)
T ss_dssp             HHHHHHHHHTTS---CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEES
T ss_pred             HHHHHHHHHHhc---CCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEC
Confidence            344556666553   4457889999999999999999987 89999999999999999999987653    245777777


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      |+.+.                          .++||+|++..++++.  +....+++.+.++|+|+|..+
T Consensus       148 d~~~~--------------------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          148 GWEDF--------------------------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             CGGGC--------------------------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             ChHHC--------------------------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence            65432                          1479999999999887  688999999999999988654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.30  E-value=2.5e-11  Score=107.05  Aligned_cols=104  Identities=13%  Similarity=-0.014  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++++|||+|||+|..+..+++.+  .+|+++|+++.+++.+++|+..++.......++.+...|+....          
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------   97 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD----------   97 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC----------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc----------
Confidence            467899999999999999999875  69999999999999999998776531000126888887764321          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~  245 (335)
                                   ...++||+|++.+++++..  ....+++.+.++|+++|
T Consensus        98 -------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  135 (217)
T 3jwh_A           98 -------------KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI  135 (217)
T ss_dssp             -------------GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred             -------------ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence                         1235899999999999876  44899999999999987

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.29  E-value=3.3e-11  Score=114.57  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=92.5

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ..++|....   ...++++|||||||+|..++.+++.|+ +|+++|.++ +++.+++|++.|+.    ..++.+...|..
T Consensus        52 ~~~~i~~~~---~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~  123 (340)
T 2fyt_A           52 YRDFIYQNP---HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIE  123 (340)
T ss_dssp             HHHHHHHCG---GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTT
T ss_pred             HHHHHHhhh---hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHH
Confidence            334555442   457889999999999999999999975 999999996 99999999998874    357888888766


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEec---cccCcccHHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD---VIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD---viY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                      +...                       ..++||+|++..   .+.+....+.++..+.++|+++|..+....++|++
T Consensus       124 ~~~~-----------------------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~  177 (340)
T 2fyt_A          124 EVHL-----------------------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLV  177 (340)
T ss_dssp             TSCC-----------------------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEE
T ss_pred             HhcC-----------------------CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEE
Confidence            5311                       124899999977   45556778889999999999988654333334444

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.28  E-value=2.6e-11  Score=111.80  Aligned_cols=102  Identities=11%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++++..+.      .++.+...|..+..       
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~~~-------   85 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATEIE-------   85 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESCTTTCC-------
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcchhhcC-------
Confidence            3457899999999999999999987   5899999999999999999987654      37888888876531       


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ..++||+|++..++++......+++.+.++|+|+|..+
T Consensus        86 -----------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  123 (284)
T 3gu3_A           86 -----------------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII  123 (284)
T ss_dssp             -----------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred             -----------------cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEE
Confidence                             12489999999999999999999999999999988544

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.28  E-value=3e-11  Score=108.33  Aligned_cols=101  Identities=16%  Similarity=-0.000  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++     ..++.+...|+.+...           
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-----------  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTP-----------  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCC-----------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCC-----------
Confidence            5889999999999999988877 4599999999999999999987653     2467777777654311           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..++||+|++..++++...  ...+++.+.++|+++|..+
T Consensus       143 ------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  182 (241)
T 2ex4_A          143 ------------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV  182 (241)
T ss_dssp             ------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ------------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence                        1247999999999998766  4589999999999988544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.27  E-value=4.5e-11  Score=108.87  Aligned_cols=126  Identities=16%  Similarity=0.190  Sum_probs=90.6

Q ss_pred             eeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHH
Q 019839           79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNC  158 (335)
Q Consensus        79 ~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~  158 (335)
                      ..+.|.+++.     .|.-..+.+....+++....     .++++|||+|||+|..++.+++.|.+|+++|+++.+++.+
T Consensus        89 ~~~~l~p~~~-----fgtg~~~tt~~~~~~l~~~~-----~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a  158 (254)
T 2nxc_A           89 IPLVIEPGMA-----FGTGHHETTRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQA  158 (254)
T ss_dssp             EEEECCCC----------CCSHHHHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHH
T ss_pred             eEEEECCCcc-----ccCCCCHHHHHHHHHHHHhc-----CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHH
Confidence            3455555443     33444566667777776542     4688999999999999999999988999999999999999


Q ss_pred             HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH
Q 019839          159 AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK  238 (335)
Q Consensus       159 ~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~  238 (335)
                      +.|+..|+.     . +.+...++.+.                       . ..++||+|++.-+.   .....++..+.
T Consensus       159 ~~n~~~~~~-----~-v~~~~~d~~~~-----------------------~-~~~~fD~Vv~n~~~---~~~~~~l~~~~  205 (254)
T 2nxc_A          159 EANAKRNGV-----R-PRFLEGSLEAA-----------------------L-PFGPFDLLVANLYA---ELHAALAPRYR  205 (254)
T ss_dssp             HHHHHHTTC-----C-CEEEESCHHHH-----------------------G-GGCCEEEEEEECCH---HHHHHHHHHHH
T ss_pred             HHHHHHcCC-----c-EEEEECChhhc-----------------------C-cCCCCCEEEECCcH---HHHHHHHHHHH
Confidence            999999873     2 56665554331                       0 13479999986332   24578899999


Q ss_pred             HhccCCCcc
Q 019839          239 RLMPLGSKK  247 (335)
Q Consensus       239 ~lL~~~~~~  247 (335)
                      ++|+++|..
T Consensus       206 ~~LkpgG~l  214 (254)
T 2nxc_A          206 EALVPGGRA  214 (254)
T ss_dssp             HHEEEEEEE
T ss_pred             HHcCCCCEE
Confidence            999998743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.27  E-value=1.4e-11  Score=108.19  Aligned_cols=116  Identities=9%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCC--------CCCCCee
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGV--------FSHQGSV  175 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~--------~~~~~~v  175 (335)
                      .|.+|+...    ...++.+|||+|||+|..++.+|+.|.+|+++|+++.|++.++++...+...        .. ..++
T Consensus        10 ~l~~~~~~l----~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~v   84 (203)
T 1pjz_A           10 DLQQYWSSL----NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA-APGI   84 (203)
T ss_dssp             HHHHHHHHH----CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE-CSSS
T ss_pred             HHHHHHHhc----ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccccc-CCcc
Confidence            455665443    2347889999999999999999999999999999999999998876431000        00 2356


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCc
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~  246 (335)
                      .+...|..+..                      ....++||+|++..++++..  ....+++.+.++|+|||.
T Consensus        85 ~~~~~d~~~l~----------------------~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           85 EIWCGDFFALT----------------------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             EEEEECCSSST----------------------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             EEEECccccCC----------------------cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            67666655431                      01125899999988887643  456689999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.27  E-value=2.4e-11  Score=111.75  Aligned_cols=99  Identities=13%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.|.+|+++|+++.+++.+++|+..++     . ++.+...|..+..            
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~~------------  180 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKEN-----L-NISTALYDINAAN------------  180 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----C-CEEEEECCGGGCC------------
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcC-----C-ceEEEEecccccc------------
Confidence            478899999999999999999999999999999999999999999876     2 6777777765531            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ..++||+|+++.++++.  +....+++.+.++|+++|..
T Consensus       181 ------------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  219 (286)
T 3m70_A          181 ------------IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYN  219 (286)
T ss_dssp             ------------CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             ------------ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence                        13589999999999964  66779999999999998854

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=7.3e-11  Score=100.19  Aligned_cols=107  Identities=7%  Similarity=0.047  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ...+.+++....   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..|+.     .++.+...|
T Consensus        20 ~~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d   91 (183)
T 2yxd_A           20 KEEIRAVSIGKL---NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-----KNCQIIKGR   91 (183)
T ss_dssp             CHHHHHHHHHHH---CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-----CSEEEEESC
T ss_pred             HHHHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-----CcEEEEECC
Confidence            344555555553   345788999999999999999999778999999999999999999998863     457777777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      +.+..                        ..++||+|++..+    .....+++.+.++  ++|.
T Consensus        92 ~~~~~------------------------~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~  126 (183)
T 2yxd_A           92 AEDVL------------------------DKLEFNKAFIGGT----KNIEKIIEILDKK--KINH  126 (183)
T ss_dssp             HHHHG------------------------GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCE
T ss_pred             ccccc------------------------cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCE
Confidence            65421                        1248999999988    6678889999988  6663

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.27  E-value=9.1e-12  Score=106.66  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      ....+.+.+....  ....++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.++.|+..|+.    ..++.+..
T Consensus        27 ~~~~~~~~~~~~l--~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~  100 (187)
T 2fhp_A           27 TTDKVKESIFNMI--GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE----PEKFEVRK  100 (187)
T ss_dssp             CCHHHHHHHHHHH--CSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEE
T ss_pred             CHHHHHHHHHHHH--HhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC----CcceEEEE
Confidence            3444555555543  233578999999999999999888876 6999999999999999999998863    24678887


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHH--HHhccCCC
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL--KRLMPLGS  245 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl--~~lL~~~~  245 (335)
                      .|+.+..+.                   .....++||+|++..+ |.......+++.+  .++|+++|
T Consensus       101 ~d~~~~~~~-------------------~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG  148 (187)
T 2fhp_A          101 MDANRALEQ-------------------FYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEA  148 (187)
T ss_dssp             SCHHHHHHH-------------------HHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEE
T ss_pred             CcHHHHHHH-------------------HHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCC
Confidence            776542100                   0001358999998666 6666777788888  77788877

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.26  E-value=3.9e-11  Score=115.61  Aligned_cols=123  Identities=16%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      ...++|...   ....++++|||||||+|..++.+++.|+ +|+++|.+ .+++.+++|+..|+.    ..++.+...|.
T Consensus        50 ~~~~~i~~~---~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~  121 (376)
T 3r0q_C           50 AYFNAVFQN---KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL----DHIVEVIEGSV  121 (376)
T ss_dssp             HHHHHHHTT---TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC----TTTEEEEESCG
T ss_pred             HHHHHHHhc---cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC----CCeEEEEECch
Confidence            344555554   2567899999999999999999999976 99999999 999999999999875    35688888877


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---cccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                      .+..                        ..++||+|++.-+.|.   ....+.+++.+.++|+|+|..++....+|++-
T Consensus       122 ~~~~------------------------~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  176 (376)
T 3r0q_C          122 EDIS------------------------LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAP  176 (376)
T ss_dssp             GGCC------------------------CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEE
T ss_pred             hhcC------------------------cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEe
Confidence            5531                        1258999999554454   36788899999999999986665555555554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.26  E-value=1e-11  Score=110.65  Aligned_cols=96  Identities=14%  Similarity=0.083  Sum_probs=80.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..         ++.+...|..+..            
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~~------------   99 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDAQ------------   99 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGCC------------
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHcC------------
Confidence            5788999999999999999999988999999999999999877432         4666666654431            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH-HhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK-RLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~-~lL~~~~~~  247 (335)
                                  ..++||+|++..++++.+....+++.+. ++|+|+|..
T Consensus       100 ------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l  137 (250)
T 2p7i_A          100 ------------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL  137 (250)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEE
T ss_pred             ------------cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEE
Confidence                        1348999999999999988999999999 999998753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.26  E-value=2.8e-12  Score=111.89  Aligned_cols=125  Identities=9%  Similarity=-0.020  Sum_probs=91.5

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      |-.++ ++=-.+-..+....     -...+|||||||+|.+++.++..  +++|+++|+++.|++.+++|+..|+.    
T Consensus        29 TReRL-p~ld~fY~~~~~~l-----~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~----   98 (200)
T 3fzg_A           29 TNERV-ATLNDFYTYVFGNI-----KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT----   98 (200)
T ss_dssp             HHTTG-GGHHHHHHHHHHHS-----CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC----
T ss_pred             HHHHh-HhHHHHHHHHHhhc-----CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----
Confidence            33344 44444444444442     34679999999999999999877  56999999999999999999999874    


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeec
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVN  251 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~  251 (335)
                      ..++.+  .|-...                        ...++||+|++.++++.-+..+..+..+.+.|++++      
T Consensus        99 ~~~v~~--~d~~~~------------------------~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pgg------  146 (200)
T 3fzg_A           99 TIKYRF--LNKESD------------------------VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQN------  146 (200)
T ss_dssp             SSEEEE--ECCHHH------------------------HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEE------
T ss_pred             CccEEE--eccccc------------------------CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCC------
Confidence            235655  221111                        134579999999999988666666668889999876      


Q ss_pred             eEEEEEEeeec
Q 019839          252 MVLYLALEKRY  262 (335)
Q Consensus       252 p~i~ia~~~R~  262 (335)
                        ++|++..|.
T Consensus       147 --vfISfptks  155 (200)
T 3fzg_A          147 --FVISFPIKS  155 (200)
T ss_dssp             --EEEEEECCC
T ss_pred             --EEEEeChHH
Confidence              788888553

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.26  E-value=7.5e-11  Score=109.31  Aligned_cols=118  Identities=8%  Similarity=-0.020  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHH---hCCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEec
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR---VAWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDL  180 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~---~~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~l  180 (335)
                      +.+.|....    .-++.+|||+|||+|..++.+++   .+.+|+++|+++.+++.+++|+..+ ..    ..++.+...
T Consensus        25 ~~~~l~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~v~~~~~   96 (299)
T 3g5t_A           25 FYKMIDEYH----DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT----YKNVSFKIS   96 (299)
T ss_dssp             HHHHHHHHC----CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C----CTTEEEEEC
T ss_pred             HHHHHHHHh----cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC----CCceEEEEc
Confidence            445555442    23788999999999999999994   4789999999999999999999886 21    367888888


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      |+.+.....                 ......++||+|+++.++++. ....+++.+.++|+|||..+
T Consensus        97 d~~~~~~~~-----------------~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~  146 (299)
T 3g5t_A           97 SSDDFKFLG-----------------ADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIA  146 (299)
T ss_dssp             CTTCCGGGC-----------------TTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEE
T ss_pred             CHHhCCccc-----------------cccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEE
Confidence            876641100                 000012589999999999999 99999999999999987543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.26  E-value=3e-11  Score=107.84  Aligned_cols=108  Identities=12%  Similarity=0.130  Sum_probs=87.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .+.+++....     -++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.+.  .      ..++.+...|..
T Consensus        42 ~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~------~~~~~~~~~d~~  108 (242)
T 3l8d_A           42 TIIPFFEQYV-----KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG--E------GPDLSFIKGDLS  108 (242)
T ss_dssp             THHHHHHHHS-----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--C------BTTEEEEECBTT
T ss_pred             HHHHHHHHHc-----CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--c------cCCceEEEcchh
Confidence            3455555542     36789999999999999999999999999999999999998774  1      356788887766


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      +...                       ..++||+|++..++++.+....+++.+.++|+++|..
T Consensus       109 ~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  149 (242)
T 3l8d_A          109 SLPF-----------------------ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYA  149 (242)
T ss_dssp             BCSS-----------------------CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEE
T ss_pred             cCCC-----------------------CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEE
Confidence            5311                       2358999999999999999999999999999998743

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.26  E-value=4.6e-11  Score=109.64  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=78.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...++.+|||||||+|..++.+++.|++|+++|+++.|++.+++|+..+.      ....+..++....           
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~------v~~~~~~~~~~~~-----------  104 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC------VTIDLLDITAEIP-----------  104 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC------CEEEECCTTSCCC-----------
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc------ceeeeeecccccc-----------
Confidence            44678999999999999999999999999999999999999999876541      1222222221000           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccC--cccHHHHHHHHHHhccCCCcceeeceEEEEEEe
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLVNMVLYLALE  259 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~  259 (335)
                                  ....++||+|+++.++++  .+....+++.+.+++ |||.       +++++.
T Consensus       105 ------------~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~-------l~lS~~  149 (261)
T 3iv6_A          105 ------------KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT-------VRASVK  149 (261)
T ss_dssp             ------------GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE-------EEEEEE
T ss_pred             ------------cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE-------EEEEec
Confidence                        012358999999999875  345667889999999 8873       556654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=2.1e-11  Score=106.98  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||+|||+|..++.++..+ .+|+++|+++.+++.+++|+..|+..   ..++.+...|..+..+.         
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~~---------  119 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLKQ---------  119 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTTS---------
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC---ccceEEEECCHHHHHHh---------
Confidence            367899999999999999877765 59999999999999999999988631   04677776664432110         


Q ss_pred             cccccccCcchhhccCC-ccEEEEeccccCcccHHHHHHHH--HHhccCCC
Q 019839          198 SQERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTL--KRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~-fDlIlasDviY~~~~~~~L~~tl--~~lL~~~~  245 (335)
                                  ...++ ||+|++... |.......+++.+  .++|+++|
T Consensus       120 ------------~~~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG  157 (201)
T 2ift_A          120 ------------PQNQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNA  157 (201)
T ss_dssp             ------------CCSSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             ------------hccCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCc
Confidence                        01247 999998766 6677777888888  45799877

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.24  E-value=9.1e-12  Score=114.76  Aligned_cols=108  Identities=12%  Similarity=0.139  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||||||+|..++.++..+.+|+++|+++.+++.+++|+..+..... ..++.+...++.+...           
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-----------  123 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLDK-----------  123 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHHH-----------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccc-cceeeEeecChhhCcc-----------
Confidence            4678999999999999999999999999999999999999998755432110 1345556655544210           


Q ss_pred             ccccccCcchhhccCCccEEEEe-ccccCccc-------HHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAA-DVIYSDDL-------TDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlas-DviY~~~~-------~~~L~~tl~~lL~~~~~~  247 (335)
                               +....++||+|++. +++++...       ...+++.+.++|+|||..
T Consensus       124 ---------~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  171 (293)
T 3thr_A          124 ---------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL  171 (293)
T ss_dssp             ---------HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEE
T ss_pred             ---------ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEE
Confidence                     00123589999998 89988777       899999999999998743

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.24  E-value=5.8e-11  Score=104.06  Aligned_cols=94  Identities=16%  Similarity=0.167  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.++  +         +.+...+..+..            
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~---------~~~~~~d~~~~~------------   98 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL--G---------RPVRTMLFHQLD------------   98 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--T---------SCCEECCGGGCC------------
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc--C---------CceEEeeeccCC------------
Confidence            46889999999999999999999999999999999999999887  2         122333333221            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ..++||+|+++.++++..  ....+++.+.++|+++|..
T Consensus        99 ------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  137 (211)
T 3e23_A           99 ------------AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLF  137 (211)
T ss_dssp             ------------CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ------------CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEE
Confidence                        235899999999999876  7788999999999998743

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.24  E-value=6.2e-11  Score=113.00  Aligned_cols=113  Identities=15%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ...++++|||+|||+|..++.+++.|. +|+++|.+ .+++.+++|+..|+.    ..++.+...|+.+...        
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------  129 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKL----DHVVTIIKGKVEEVEL--------  129 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTC----TTTEEEEESCTTTCCC--------
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCC----CCcEEEEECcHHHccC--------
Confidence            346889999999999999999999965 99999999 599999999999874    3568999888876521        


Q ss_pred             CccccccccCcchhhccCCccEEEEecc---ccCcccHHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADV---IYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDv---iY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                                     ..++||+|++..+   +.+....+.+++.+.++|+|+|..++....+|++
T Consensus       130 ---------------~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~  179 (349)
T 3q7e_A          130 ---------------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT  179 (349)
T ss_dssp             ---------------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEE
T ss_pred             ---------------CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEe
Confidence                           1358999999665   4445788999999999999988655434344444

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.23  E-value=6.2e-11  Score=106.93  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++ .+.     ..++.+...|+.+...          
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-----~~~~~~~~~d~~~~~~----------  100 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-----DRKVQVVQADARAIPL----------  100 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-----CTTEEEEESCTTSCCS----------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-----CCceEEEEcccccCCC----------
Confidence            356889999999999999999998999999999999999999987 322     3568888888754310          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                   ..++||+|+++.++++......+++.+.++|+|+|..
T Consensus       101 -------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  137 (263)
T 2yqz_A          101 -------------PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGAL  137 (263)
T ss_dssp             -------------CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEE
T ss_pred             -------------CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEE
Confidence                         1347999999999999988999999999999998754

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.23  E-value=8.5e-11  Score=102.93  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=86.5

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +.|......+ .+.+..   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..++     ..++.
T Consensus        58 ~~~~~~~~~~-~~~~~l---~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~v~  128 (210)
T 3lbf_A           58 QTISQPYMVA-RMTELL---ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD-----LHNVS  128 (210)
T ss_dssp             CEECCHHHHH-HHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEE
T ss_pred             CEeCCHHHHH-HHHHhc---CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcC-----CCceE
Confidence            3444444443 334432   34678999999999999999999999999999999999999999998876     34688


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      +...|+.+...                       ..++||+|++..++++...      .+.++|+++|..
T Consensus       129 ~~~~d~~~~~~-----------------------~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~l  170 (210)
T 3lbf_A          129 TRHGDGWQGWQ-----------------------ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGIL  170 (210)
T ss_dssp             EEESCGGGCCG-----------------------GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEE
T ss_pred             EEECCcccCCc-----------------------cCCCccEEEEccchhhhhH------HHHHhcccCcEE
Confidence            88888765421                       2358999999988876543      578899998743

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.23  E-value=7.6e-11  Score=111.41  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=87.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++++|||+|||+|..++.+++.|+ +|+++|.+ .+++.+++|+..|+.    ..++.+...|..+...         
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~---------  101 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKLEDVHL---------  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCTTTSCC---------
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECchhhccC---------
Confidence            35788999999999999999999875 99999999 699999999998874    3568888877665311         


Q ss_pred             ccccccccCcchhhccCCccEEEEecc---ccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADV---IYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDv---iY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                    ..++||+|++.-+   +.+....+.++..+.++|+++|..++...++|++.
T Consensus       102 --------------~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  152 (328)
T 1g6q_1          102 --------------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAG  152 (328)
T ss_dssp             --------------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred             --------------CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEE
Confidence                          1248999999744   44567788899999999999886554444455543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.23  E-value=2.6e-11  Score=105.74  Aligned_cols=101  Identities=12%  Similarity=0.112  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCccCHHH-HHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAG-ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~g-l~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||+|||+|..+ ..++..+.+|+++|.++.+++.++.++..+.      .++.+...|..+...          
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~----------   85 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIRKLPF----------   85 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTTSCCS----------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchhhCCC----------
Confidence            46789999999999864 4456668899999999999999999988764      345666666654310          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..++||+|++.+++++.  +....+++.+.++|+|+|..+
T Consensus        86 -------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  125 (209)
T 2p8j_A           86 -------------KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLAC  125 (209)
T ss_dssp             -------------CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                         13479999999999887  678899999999999988543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.23  E-value=8.1e-11  Score=113.40  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ...+.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..|+...  ..++.+...|..+..+        
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~--~~~v~~~~~D~~~~~~--------  289 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSGVE--------  289 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG--GGGEEEEECSTTTTCC--------
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc--CceEEEEechhhccCC--------
Confidence            345689999999999999999998  6899999999999999999999987321  1246667777665321        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC-----cccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-----~~~~~~L~~tl~~lL~~~~~  246 (335)
                                      .++||+|++...++.     ......+++.+.++|+++|.
T Consensus       290 ----------------~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~  329 (375)
T 4dcm_A          290 ----------------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE  329 (375)
T ss_dssp             ----------------TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEE
T ss_pred             ----------------CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcE
Confidence                            248999999988774     23445789999999999874

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.22  E-value=1.6e-11  Score=112.31  Aligned_cols=103  Identities=18%  Similarity=0.132  Sum_probs=81.0

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      |.++|....     -.+.+|||||||+|..+..++..+.+|+++|.++.|++.+++           ..++.+...+..+
T Consensus        29 l~~~l~~~~-----~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           29 LFRWLGEVA-----PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAED   92 (257)
T ss_dssp             HHHHHHHHS-----SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTC
T ss_pred             HHHHHHHhc-----CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhh
Confidence            557776653     245699999999999999999999999999999998876542           2467777776554


Q ss_pred             CCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          185 PWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ..-                       ..++||+|+++.++++.+ .+.+++.+.++|+|||..
T Consensus        93 ~~~-----------------------~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvLkpgG~l  131 (257)
T 4hg2_A           93 TGL-----------------------PPASVDVAIAAQAMHWFD-LDRFWAELRRVARPGAVF  131 (257)
T ss_dssp             CCC-----------------------CSSCEEEEEECSCCTTCC-HHHHHHHHHHHEEEEEEE
T ss_pred             hcc-----------------------cCCcccEEEEeeehhHhh-HHHHHHHHHHHcCCCCEE
Confidence            311                       235899999999998775 678899999999998844

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.22  E-value=3.5e-11  Score=107.25  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++.+|||||||+|..+..+++.+. +|+++|+++.+++.++.+...        .++.+...|..+...         
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~---------  103 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHL---------  103 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCC---------
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccC---------
Confidence            35788999999999999999999887 999999999999999876532        246666666554310         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|+++.++++.+....+++.+.++|+++|..+
T Consensus       104 --------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~  141 (243)
T 3bkw_A          104 --------------PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFV  141 (243)
T ss_dssp             --------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEE
Confidence                          13489999999999999899999999999999988544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.22  E-value=4.9e-11  Score=105.00  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.++.         .++.+...|..+...            
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~~~------------  103 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSFEV------------  103 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSCCC------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhcCC------------
Confidence            67899999999999999999999999999999999999988754         134555566554311            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHH--HHHHHHHhccCCCcc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDA--LFHTLKRLMPLGSKK  247 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~--L~~tl~~lL~~~~~~  247 (335)
                                 . ++||+|++..++++....+.  +++.+.++|+++|..
T Consensus       104 -----------~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  141 (220)
T 3hnr_A          104 -----------P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI  141 (220)
T ss_dssp             -----------C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             -----------C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEE
Confidence                       1 58999999999999887776  999999999998853

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.22  E-value=7.8e-11  Score=103.13  Aligned_cols=98  Identities=16%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.    ++     ..++.+...|..+..           
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~-----~~~~~~~~~d~~~~~-----------  103 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG-----LDNVEFRQQDLFDWT-----------  103 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC-----CTTEEEEECCTTSCC-----------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC-----CCCeEEEecccccCC-----------
Confidence            3467799999999999999999999999999999999999887    22     256788888766541           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..++||+|+++.++++...  ...+++.+.++|+++|..+
T Consensus       104 -------------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  143 (218)
T 3ou2_A          104 -------------PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE  143 (218)
T ss_dssp             -------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence                         2358999999999999776  4889999999999988544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.22  E-value=2.4e-11  Score=103.56  Aligned_cols=117  Identities=14%  Similarity=0.111  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      +....+.+.+....  ....++++|||+|||+|..++.+++.+ .+|+++|+++.+++.++.|+..++.    ..++.+.
T Consensus        13 p~~~~~~~~~~~~l--~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~   86 (177)
T 2esr_A           13 PTSDKVRGAIFNMI--GPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLL   86 (177)
T ss_dssp             -----CHHHHHHHH--CSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEE
T ss_pred             cCHHHHHHHHHHHH--HhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEE
Confidence            33444455555443  124678999999999999999999885 6999999999999999999998763    2467777


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH--HhccCCC
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK--RLMPLGS  245 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~--~lL~~~~  245 (335)
                      ..|+.+..                      .....+||+|++... |.....+.+++.+.  ++|+++|
T Consensus        87 ~~d~~~~~----------------------~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG  132 (177)
T 2esr_A           87 KMEAERAI----------------------DCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQV  132 (177)
T ss_dssp             CSCHHHHH----------------------HHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ECcHHHhH----------------------HhhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcCCCc
Confidence            76654420                      011247999998654 44455666777776  8888877

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.21  E-value=1e-10  Score=103.97  Aligned_cols=99  Identities=20%  Similarity=0.164  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..+       .++.+...|..+...        
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~--------  106 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-------LKVKYIEADYSKYDF--------  106 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-------TTEEEEESCTTTCCC--------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-------CCEEEEeCchhccCC--------
Confidence            457889999999999999999988  789999999999999999887543       267888887765421        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~~~~~  247 (335)
                                      .++||+|++..++++....+  .+++.+.++|+|+|..
T Consensus       107 ----------------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  144 (234)
T 3dtn_A          107 ----------------EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIF  144 (234)
T ss_dssp             ----------------CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEE
Confidence                            15899999999999987655  5999999999998743

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.20  E-value=6.7e-11  Score=108.69  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=84.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.++.++..++.    ..++.+...|..+...          
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~----------  128 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHM----------  128 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCC----------
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CccEEEEECCcccccc----------
Confidence            4678999999999988888888875 999999999999999999887643    2568888888765411          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC----cccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ...++||+|++..++++    ......+++.+.++|+|+|..+
T Consensus       129 ------------~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~  171 (298)
T 1ri5_A          129 ------------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI  171 (298)
T ss_dssp             ------------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ------------CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                        01358999999999966    5667889999999999988543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.20  E-value=7.1e-11  Score=102.70  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++ +|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++      .++.+...|..+...            
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~------------   90 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLADFDI------------   90 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTTBSC------------
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhhcCC------------
Confidence            45 99999999999999999999999999999999999999988765      256777776654310            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ..+.||+|+++.+.+.......+++.+.++|+++|..
T Consensus        91 -----------~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l  127 (202)
T 2kw5_A           91 -----------VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVF  127 (202)
T ss_dssp             -----------CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEE
T ss_pred             -----------CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEE
Confidence                       1348999999765554567888999999999998743

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.20  E-value=2e-10  Score=112.59  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      .+..|.+++.+..   ....+.+|||||||+|..++.+|+.+.+|+++|+++.+++.+++|+..|+.     .++.+...
T Consensus       270 ~~e~l~~~~~~~l---~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~f~~~  341 (433)
T 1uwv_A          270 VNQKMVARALEWL---DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHE  341 (433)
T ss_dssp             HHHHHHHHHHHHH---TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEEC
T ss_pred             HHHHHHHHHHHhh---cCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEC
Confidence            3556666666653   334678999999999999999999999999999999999999999999873     47889998


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                      |+.+..+..                   .....+||+|++ |.-|...  ..+++.+..   .+++.+     +|+++
T Consensus       342 d~~~~l~~~-------------------~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~---~~p~~i-----vyvsc  389 (433)
T 1uwv_A          342 NLEEDVTKQ-------------------PWAKNGFDKVLL-DPARAGA--AGVMQQIIK---LEPIRI-----VYVSC  389 (433)
T ss_dssp             CTTSCCSSS-------------------GGGTTCCSEEEE-CCCTTCC--HHHHHHHHH---HCCSEE-----EEEES
T ss_pred             CHHHHhhhh-------------------hhhcCCCCEEEE-CCCCccH--HHHHHHHHh---cCCCeE-----EEEEC
Confidence            887743211                   012347999997 3333322  245555544   234556     88886

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.19  E-value=1.7e-11  Score=103.37  Aligned_cols=99  Identities=21%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++++|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..++     . ++.+...|+.+..+.           
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~~~~-----------  103 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG-----L-GARVVALPVEVFLPE-----------  103 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT-----C-CCEEECSCHHHHHHH-----------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEeccHHHHHHh-----------
Confidence            78899999999999999999998889999999999999999999876     2 566666665432100           


Q ss_pred             cccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH--HhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK--RLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~--~lL~~~~  245 (335)
                              .....++||+|++..+++  ...+.+++.+.  ++|+++|
T Consensus       104 --------~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG  141 (171)
T 1ws6_A          104 --------AKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGG  141 (171)
T ss_dssp             --------HHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEE
T ss_pred             --------hhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCc
Confidence                    000123799999977654  56667777777  8899877

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.19  E-value=5.2e-11  Score=103.61  Aligned_cols=94  Identities=15%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             CCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          121 GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      +.+|||+|||+|..+..++..+.+|+++|+++.+++.++.+.          .++.+...|+.+..              
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~--------------   97 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLS--------------   97 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGG--------------
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccc--------------
Confidence            789999999999999999999999999999999999998772          24566666654321              


Q ss_pred             ccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                               ...++||+|++..++++..  ....+++.+.++|+++|..
T Consensus        98 ---------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l  137 (203)
T 3h2b_A           98 ---------DSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGL  137 (203)
T ss_dssp             ---------GSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEE
T ss_pred             ---------cCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEE
Confidence                     1235899999999999975  8899999999999998743

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.19  E-value=5.2e-11  Score=108.84  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHH---ccCCCCCCCe
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL---NSGVFSHQGS  174 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~---N~~~~~~~~~  174 (335)
                      -.+++|+.|+       ...++.+|||||||+|..++.+++..  .+|+++|+++.+++.+++|+..   |+.    ..+
T Consensus        23 ~D~~lL~~~~-------~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~   91 (260)
T 2ozv_A           23 MDAMLLASLV-------ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----SAR   91 (260)
T ss_dssp             CHHHHHHHTC-------CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGG
T ss_pred             cHHHHHHHHh-------cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cce
Confidence            4678888875       33467899999999999999999884  6999999999999999999988   653    246


Q ss_pred             eEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc------------------ccHHHHHHH
Q 019839          175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD------------------DLTDALFHT  236 (335)
Q Consensus       175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------------------~~~~~L~~t  236 (335)
                      +.+...|+.+..+...               . ..-...+||+|++...++..                  ...+.+++.
T Consensus        92 v~~~~~D~~~~~~~~~---------------~-~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~  155 (260)
T 2ozv_A           92 IEVLEADVTLRAKARV---------------E-AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT  155 (260)
T ss_dssp             EEEEECCTTCCHHHHH---------------H-TTCCTTCEEEEEECCCC---------------------CCHHHHHHH
T ss_pred             EEEEeCCHHHHhhhhh---------------h-hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH
Confidence            8888888776411000               0 00013489999997555433                  236789999


Q ss_pred             HHHhccCCCcc
Q 019839          237 LKRLMPLGSKK  247 (335)
Q Consensus       237 l~~lL~~~~~~  247 (335)
                      +.++|+++|..
T Consensus       156 ~~~~LkpgG~l  166 (260)
T 2ozv_A          156 ASAIMVSGGQL  166 (260)
T ss_dssp             HHHHEEEEEEE
T ss_pred             HHHHcCCCCEE
Confidence            99999998743

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.19  E-value=3.3e-11  Score=111.84  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=79.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCC-------------------------
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVF-------------------------  169 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~-------------------------  169 (335)
                      ..+++++|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..+....                         
T Consensus        43 ~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             GGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             hhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            3468999999999999999999987  6899999999999999999876543110                         


Q ss_pred             ----------------------------CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEe
Q 019839          170 ----------------------------SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA  221 (335)
Q Consensus       170 ----------------------------~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlas  221 (335)
                                                  ....++.+...||.......                  .....+.||+|++.
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~------------------~~~~~~~fD~I~~~  184 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDL------------------VEAQTPEYDVVLCL  184 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHH------------------HTTCCCCEEEEEEE
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCcccc------------------ccccCCCcCEEEEC
Confidence                                        00135666666665431000                  00124689999999


Q ss_pred             ccccC------cccHHHHHHHHHHhccCCCc
Q 019839          222 DVIYS------DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       222 DviY~------~~~~~~L~~tl~~lL~~~~~  246 (335)
                      .++.+      ++....+++.+.++|++||.
T Consensus       185 ~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~  215 (292)
T 3g07_A          185 SLTKWVHLNWGDEGLKRMFRRIYRHLRPGGI  215 (292)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             hHHHHhhhcCCHHHHHHHHHHHHHHhCCCcE
Confidence            99843      34778899999999999874

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.19  E-value=8.9e-11  Score=100.28  Aligned_cols=109  Identities=13%  Similarity=0.154  Sum_probs=85.1

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +..++....   ...++.+|||+|||+|..++.+++.+.+|+++|.++.+++.++.|+..++.    ..++.+...|+.+
T Consensus        21 ~~~~~~~~~---~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~   93 (192)
T 1l3i_A           21 VRCLIMCLA---EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLMEGDAPE   93 (192)
T ss_dssp             HHHHHHHHH---CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEEESCHHH
T ss_pred             HHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC----CcceEEEecCHHH
Confidence            444554443   446788999999999999999999889999999999999999999988763    2467777766544


Q ss_pred             CCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          185 PWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      .                       ......||+|++..++.   ....+++.+.++|+++|.
T Consensus        94 ~-----------------------~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~  129 (192)
T 1l3i_A           94 A-----------------------LCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGR  129 (192)
T ss_dssp             H-----------------------HTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEE
T ss_pred             h-----------------------cccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcE
Confidence            2                       11124799999987764   458899999999999874

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.18  E-value=4.7e-10  Score=101.16  Aligned_cols=126  Identities=13%  Similarity=0.095  Sum_probs=88.7

Q ss_pred             CccceeehhHH-HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCC
Q 019839           93 SVGLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGV  168 (335)
Q Consensus        93 ~~G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~  168 (335)
                      ..+.++|+--. -||..|+..+..-..-+|.+|||||||+|.....+|+. |  .+|++.|+++++++.+++++...   
T Consensus        49 ~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---  125 (233)
T 4df3_A           49 GEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---  125 (233)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---
T ss_pred             CceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---
Confidence            35789998733 35555554432224568999999999999999999987 4  58999999999999998876432   


Q ss_pred             CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                          .++.....+-.+....                    ......+|+|++ | ++++.....++..+.+.|+|+|..
T Consensus       126 ----~ni~~V~~d~~~p~~~--------------------~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpGG~l  178 (233)
T 4df3_A          126 ----RNIFPILGDARFPEKY--------------------RHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDGGYM  178 (233)
T ss_dssp             ----TTEEEEESCTTCGGGG--------------------TTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEEEEE
T ss_pred             ----cCeeEEEEeccCcccc--------------------ccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCCCEE
Confidence                3555555544332100                    112357999885 4 445667778899999999998853

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.18  E-value=1.7e-10  Score=105.16  Aligned_cols=115  Identities=14%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchH------HHHHHHHHHHHccCCCCCCCe
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNY------ILDNCAKNVQLNSGVFSHQGS  174 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~------~l~~~~~Nv~~N~~~~~~~~~  174 (335)
                      .....++...   ...++.+|||+|||+|..++.+++. |  .+|+++|+++.      +++.+++|+..++.    ..+
T Consensus        30 ~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----~~~  102 (275)
T 3bkx_A           30 AHRLAIAEAW---QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----GDR  102 (275)
T ss_dssp             HHHHHHHHHH---TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT----GGG
T ss_pred             HHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC----CCc
Confidence            3334444443   3457899999999999999999987 4  79999999987      99999999987653    256


Q ss_pred             eEEEecc-CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          175 VHVRDLN-WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       175 v~v~~ld-W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      +.+...| +.....                     .-..++||+|++..++++......+++.++.+++++|.
T Consensus       103 v~~~~~d~~~~~~~---------------------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~  154 (275)
T 3bkx_A          103 LTVHFNTNLSDDLG---------------------PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDH  154 (275)
T ss_dssp             EEEECSCCTTTCCG---------------------GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSE
T ss_pred             eEEEECChhhhccC---------------------CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCE
Confidence            8888776 322210                     00235899999999999988888899999999988774

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.18  E-value=5.3e-11  Score=104.50  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||||||+|..++.++..+ .+|+++|+++.+++.+++|+..|+.     .++.+...|+.+..+          
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~D~~~~~~----------  117 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAMSFLA----------  117 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHHHHHS----------
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHh----------
Confidence            368899999999999999877776 5999999999999999999998862     467777666543210          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH--hccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~--lL~~~~  245 (335)
                                  ...++||+|++... |+......+++.+.+  +|+++|
T Consensus       118 ------------~~~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG  154 (202)
T 2fpo_A          118 ------------QKGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEA  154 (202)
T ss_dssp             ------------SCCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEE
T ss_pred             ------------hcCCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCc
Confidence                        01247999998655 777777888888876  488876

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.18  E-value=2.6e-11  Score=102.55  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++    .      .++.+...|  ..             
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~------~~v~~~~~d--~~-------------   70 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK----F------DSVITLSDP--KE-------------   70 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH----C------TTSEEESSG--GG-------------
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh----C------CCcEEEeCC--CC-------------
Confidence            4678999999999999999999877999999999999999887    1      345666665  11             


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...++||+|+++.++++.+....+++.+.++|+++|..
T Consensus        71 -----------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  108 (170)
T 3i9f_A           71 -----------IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRV  108 (170)
T ss_dssp             -----------SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEE
Confidence                       02348999999999999999999999999999998743

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.18  E-value=3.9e-10  Score=101.43  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -+|.+|||+|||+|.+++.+++.+  .+|+++|+++.+++.+++|++.|+.    ..++.++..|+.+...         
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I~~~~gD~l~~~~---------   86 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL----TSKIDVRLANGLSAFE---------   86 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCC---------
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccc---------
Confidence            467899999999999999999986  4799999999999999999999985    3579999988776522         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                    ...+||+|+.+.+--  +....++......+++++
T Consensus        87 --------------~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~  119 (230)
T 3lec_A           87 --------------EADNIDTITICGMGG--RLIADILNNDIDKLQHVK  119 (230)
T ss_dssp             --------------GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCC
T ss_pred             --------------cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCC
Confidence                          123699988665543  445566666666776655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=5.6e-11  Score=108.11  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .+++++....   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.+.           ++.+...|+.
T Consensus        21 ~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~~   86 (261)
T 3ege_A           21 RIVNAIINLL---NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYAE   86 (261)
T ss_dssp             HHHHHHHHHH---CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-----------TEEEECCCTT
T ss_pred             HHHHHHHHHh---CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-----------CCEEEECchh
Confidence            3556665553   3457899999999999999999998999999999998877665332           4677777765


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +...                       ..++||+|++..++++......+++.+.++|+ ||..+
T Consensus        87 ~~~~-----------------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~  127 (261)
T 3ege_A           87 NLAL-----------------------PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIV  127 (261)
T ss_dssp             SCCS-----------------------CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEE
T ss_pred             hCCC-----------------------CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEE
Confidence            4310                       13589999999999999999999999999999 87543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.18  E-value=3.9e-10  Score=96.46  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+.          ++.+...|+.+...           
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~-----------  103 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQI-----------  103 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCC-----------
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCC-----------
Confidence            367899999999999999999999999999999999999987752          35666666654310           


Q ss_pred             ccccccCcchhhccCCccEEEEe-ccccCc--ccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAA-DVIYSD--DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlas-DviY~~--~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ..++||+|+++ +++++.  +....+++.+.++|+++|.
T Consensus       104 ------------~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~  142 (195)
T 3cgg_A          104 ------------SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGR  142 (195)
T ss_dssp             ------------CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ------------CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCE
Confidence                        12479999998 777765  4568899999999999774

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=1.3e-10  Score=104.14  Aligned_cols=120  Identities=15%  Similarity=0.054  Sum_probs=89.5

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      ..|..+......+..     ...++.+|||||||+|..++.+++.+.+|+++|+++.+++.+++|..        ..++.
T Consensus        38 ~~~~~~~~~~~~~~~-----~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~  104 (245)
T 3ggd_A           38 NVERAVVVDLPRFEL-----LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT--------AANIS  104 (245)
T ss_dssp             CGGGTHHHHHHHHTT-----TSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC--------CTTEE
T ss_pred             hhHHHHHHHHHHHhh-----ccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc--------ccCce
Confidence            344444444444432     23577899999999999999999998899999999999999998762        24678


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                      +...|..+....                  ........||+|++..++++..  ....+++.+.++|+++|..
T Consensus       105 ~~~~d~~~~~~~------------------~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  159 (245)
T 3ggd_A          105 YRLLDGLVPEQA------------------AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM  159 (245)
T ss_dssp             EEECCTTCHHHH------------------HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             EEECcccccccc------------------cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence            888776653110                  0011123599999999999987  7899999999999998843

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.17  E-value=7.2e-11  Score=105.17  Aligned_cols=100  Identities=12%  Similarity=0.007  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++      .++.+...|..+..            
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~------------   97 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISNLN------------   97 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGGCC------------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcC------CCeEEEecccccCC------------
Confidence            378899999999999999999999999999999999999999987764      24666666654421            


Q ss_pred             ccccccCcchhhccCCccEEEEec-cccCc---ccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAAD-VIYSD---DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasD-viY~~---~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..++||+|++.. ++++.   +....+++.+.++|+++|..+
T Consensus        98 ------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  139 (246)
T 1y8c_A           98 ------------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             ------------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ------------ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                        114899999997 99887   678889999999999988543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.17  E-value=2.4e-10  Score=108.88  Aligned_cols=121  Identities=12%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ..+.|....   ...++++|||+|||+|..++.+++.+. +|+++|.++ +++.++++++.|+.    ..++.+...|+.
T Consensus        38 y~~~i~~~l---~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v~~~~~d~~  109 (348)
T 2y1w_A           38 YQRAILQNH---TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVE  109 (348)
T ss_dssp             HHHHHHHTG---GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTT
T ss_pred             HHHHHHhcc---ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC----CCcEEEEEcchh
Confidence            334455443   446889999999999999999999864 999999995 88999999998874    357888888876


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcceeeceEEEEE
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLVNMVLYLA  257 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia  257 (335)
                      +..                        ..++||+|++..+.|+.  +.....+..+.++|+++|..++..++.+++
T Consensus       110 ~~~------------------------~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  161 (348)
T 2y1w_A          110 EVS------------------------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLA  161 (348)
T ss_dssp             TCC------------------------CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEE
T ss_pred             hCC------------------------CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEE
Confidence            541                        12479999998887753  344455667789999988665444444443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.16  E-value=1.4e-10  Score=104.48  Aligned_cols=96  Identities=18%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++.+    .      .++.+...|..+..         
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~------~~~~~~~~d~~~~~---------   91 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----L------PNTNFGKADLATWK---------   91 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----S------TTSEEEECCTTTCC---------
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----C------CCcEEEECChhhcC---------
Confidence            357789999999999999999988  78999999999999999887    1      34667777765531         


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ...+||+|+++.++++.+....+++.+.++|+++|..
T Consensus        92 ---------------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  128 (259)
T 2p35_A           92 ---------------PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVL  128 (259)
T ss_dssp             ---------------CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEE
T ss_pred             ---------------ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEE
Confidence                           1347999999999999989999999999999998743

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.16  E-value=1.8e-10  Score=105.05  Aligned_cols=119  Identities=9%  Similarity=0.027  Sum_probs=84.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH----------ccCCC--CC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL----------NSGVF--SH  171 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~----------N~~~~--~~  171 (335)
                      .|.+|+....   ...++.+|||+|||+|..++.+|+.|.+|+++|+++.+++.++++...          +....  ..
T Consensus        55 ~l~~~~~~~~---~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           55 LLKKHLDTFL---KGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             HHHHHHHHHH---TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHhc---cCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            4566664431   123678999999999999999999999999999999999998765431          00000  00


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ..++.+...|..+...                      ...++||+|++..++++.  +....+++.+.++|+|||..
T Consensus       132 ~~~i~~~~~D~~~l~~----------------------~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l  187 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPR----------------------ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQY  187 (252)
T ss_dssp             TSSEEEEESCTTTGGG----------------------GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             CCceEEEECccccCCc----------------------ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEE
Confidence            2467777777654310                      112589999998877654  45677999999999998853

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.16  E-value=5.4e-10  Score=100.19  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+|.+|||+|||+|.+++.+|+.+  .+|+++|+++.+++.++.|++.|+.    ..++.++..|+.+..+         
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i~~~~~d~l~~l~---------   80 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQVRLANGLAAFE---------   80 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCC---------
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECchhhhcc---------
Confidence            467899999999999999999986  4899999999999999999999985    3578999988765422         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                    ...+||+|+.+..-  -.....++......|++++
T Consensus        81 --------------~~~~~D~IviaG~G--g~~i~~Il~~~~~~L~~~~  113 (225)
T 3kr9_A           81 --------------ETDQVSVITIAGMG--GRLIARILEEGLGKLANVE  113 (225)
T ss_dssp             --------------GGGCCCEEEEEEEC--HHHHHHHHHHTGGGCTTCC
T ss_pred             --------------cCcCCCEEEEcCCC--hHHHHHHHHHHHHHhCCCC
Confidence                          11269988866542  2345667777777787654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.16  E-value=1.3e-11  Score=110.53  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..++.    ..++.+...|+.+..            
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~------------  140 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDFLLLA------------  140 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHG------------
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECChHHhc------------
Confidence            4789999999999999999999999999999999999999999998863    246888887765431            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ...+||+|++..++++.......+..+.++|+|+|..
T Consensus       141 ------------~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~  177 (241)
T 3gdh_A          141 ------------SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFE  177 (241)
T ss_dssp             ------------GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHH
T ss_pred             ------------ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCccee
Confidence                        2358999999888887766665666788889988753

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.15  E-value=1.7e-10  Score=103.34  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++++|||+|||+|..+..+++.+.+|+++|+++.+++.++.+             +.+...|..+...           
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~-----------   95 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLK-----------   95 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHH-----------
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhh-----------
Confidence            4678999999999999999999999999999999999988765             2233332211100           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                .-..++||+|++..++++..  ....+++.+.++|+|+|..+
T Consensus        96 ----------~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  137 (240)
T 3dli_A           96 ----------SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV  137 (240)
T ss_dssp             ----------TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEE
T ss_pred             ----------hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEE
Confidence                      00235899999999999987  55999999999999988543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.14  E-value=1.7e-10  Score=103.66  Aligned_cols=101  Identities=10%  Similarity=-0.060  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++.+|||+|||+|..++.+++. ..+|+++|+++.+++.+++++..+       .++.+...|+.+...         
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~---------  154 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATL---------  154 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGCCC---------
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHHCCC---------
Confidence            346889999999999999988877 467999999999999999887543       357777777655311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|++..++++.  +....+++.+.++|+++|..+
T Consensus       155 --------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  194 (254)
T 1xtp_A          155 --------------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF  194 (254)
T ss_dssp             --------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence                          13489999999999987  568899999999999988544

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=1e-10  Score=107.22  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.+.          .++.+...|..+..            
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~------------  113 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNFR------------  113 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTCC------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhCC------------
Confidence            46789999999999999999998899999999999999998764          13455555554421            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ..++||+|+++.++++......+++.+.++|+|||..
T Consensus       114 ------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l  150 (279)
T 3ccf_A          114 ------------VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRF  150 (279)
T ss_dssp             ------------CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             ------------cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEE
Confidence                        1248999999999999888999999999999998743

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.14  E-value=2.8e-10  Score=102.26  Aligned_cols=100  Identities=13%  Similarity=0.115  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..++      .++.+...|+.+..            
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~------------  101 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIA------------  101 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCC------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhhcc------------
Confidence            467899999999999999999999999999999999999999998764      25677777765431            


Q ss_pred             ccccccCcchhhccCCccEEEEec-cc--cCcccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAAD-VI--YSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasD-vi--Y~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..++||+|++.. .+  ++.+....+++.+.++|+|+|..+
T Consensus       102 ------------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li  142 (252)
T 1wzn_A          102 ------------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (252)
T ss_dssp             ------------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ------------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence                        124799999752 22  234567889999999999988654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.14  E-value=4.1e-10  Score=98.85  Aligned_cols=113  Identities=13%  Similarity=0.076  Sum_probs=84.7

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCC
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQG  173 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~  173 (335)
                      +.|......+. +.+..   ...++.+|||+|||+|..++.+++.+   .+|+++|.++.+++.+++|+..++     ..
T Consensus        58 ~~~~~~~~~~~-~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~  128 (215)
T 2yxe_A           58 QTISAIHMVGM-MCELL---DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YD  128 (215)
T ss_dssp             EEECCHHHHHH-HHHHT---TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-----CT
T ss_pred             cEeCcHHHHHH-HHHhh---CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CC
Confidence            55555554444 33432   34678899999999999999999885   799999999999999999998765     24


Q ss_pred             eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      ++.+...|.....                       ...++||+|++..++++..      +.+.++|+++|..
T Consensus       129 ~v~~~~~d~~~~~-----------------------~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l  173 (215)
T 2yxe_A          129 NVIVIVGDGTLGY-----------------------EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKL  173 (215)
T ss_dssp             TEEEEESCGGGCC-----------------------GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEE
T ss_pred             CeEEEECCcccCC-----------------------CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEE
Confidence            5777777653321                       1235799999999988654      4788999998743

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.13  E-value=1.3e-10  Score=101.49  Aligned_cols=95  Identities=14%  Similarity=0.027  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      +++.+|||+|||+|..++.+++.  +.+|+++|.++.+++.++.|+..++.     .++.+...|+.+..+         
T Consensus        64 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~---------  129 (207)
T 1jsx_A           64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFPS---------  129 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSCC---------
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEecchhhCCc---------
Confidence            36889999999999999999987  67999999999999999999998763     448888888876421         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                     .++||+|++..+    .....+++.+.++|+++|.
T Consensus       130 ---------------~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~  160 (207)
T 1jsx_A          130 ---------------EPPFDGVISRAF----ASLNDMVSWCHHLPGEQGR  160 (207)
T ss_dssp             ---------------CSCEEEEECSCS----SSHHHHHHHHTTSEEEEEE
T ss_pred             ---------------cCCcCEEEEecc----CCHHHHHHHHHHhcCCCcE
Confidence                           247999997532    4567899999999999874

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.13  E-value=2.9e-10  Score=109.59  Aligned_cols=113  Identities=21%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCC----CCCCCeeEEEeccCCCCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGV----FSHQGSVHVRDLNWMNPWPPIF  190 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~----~~~~~~v~v~~ldW~~~~~~~~  190 (335)
                      ..++.+|||||||+|..++.+++.   +.+|+++|+++.+++.+++|+..+...    .. ..++.+...|+.+......
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~-~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS-RSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT-CCCEEEEESCTTCGGGCBS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC-CCceEEEEccHHHhhhccc
Confidence            457899999999999999998886   459999999999999999998765210    00 2578888888776311000


Q ss_pred             cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       .....++||+|++..++++......+++.+.++|+|||..+
T Consensus       160 -----------------~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  200 (383)
T 4fsd_A          160 -----------------EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY  200 (383)
T ss_dssp             -----------------CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------------CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEE
Confidence                             00023589999999999999899999999999999988543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.13  E-value=3.1e-10  Score=102.84  Aligned_cols=106  Identities=16%  Similarity=-0.009  Sum_probs=83.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .+.+++....     -++.+|||||||+|..++.+++.+.+|+++|+++.+++.++++..          ++.+...|..
T Consensus        39 ~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~  103 (263)
T 3pfg_A           39 DLAALVRRHS-----PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----------DAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTT
T ss_pred             HHHHHHHhhC-----CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCEEEECChH
Confidence            4455555442     356899999999999999999999999999999999999987742          4567777766


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEec-cccCc---ccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD-VIYSD---DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD-viY~~---~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +..                        ..++||+|++.. ++++.   +....+++.+.++|+|+|..+
T Consensus       104 ~~~------------------------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  148 (263)
T 3pfg_A          104 DFS------------------------LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV  148 (263)
T ss_dssp             TCC------------------------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             HCC------------------------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            531                        135899999997 88876   466788999999999988654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.13  E-value=2.6e-11  Score=109.17  Aligned_cols=101  Identities=13%  Similarity=0.104  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++...+.      .++.+...+|.+....         
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~---------  123 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPT---------  123 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGG---------
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhccc---------
Confidence            47899999999999999998877 5789999999999999999887654      5677777777543111         


Q ss_pred             cccccccCcchhhccCCccEEEE-----eccccCcccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLA-----ADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIla-----sDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ....+||.|+.     ...+.+....+.+++.+.++|+|||.
T Consensus       124 ------------~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~  165 (236)
T 3orh_A          124 ------------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV  165 (236)
T ss_dssp             ------------SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             ------------ccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCE
Confidence                        12347898864     44445556778899999999999884

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.12  E-value=8.6e-10  Score=99.98  Aligned_cols=98  Identities=8%  Similarity=-0.008  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+|.+|||+|||+|.+++.+|+.+  .+|+++|+++.+++.+++|++.|+.    ..++.++..|+.+...         
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~I~v~~gD~l~~~~---------   86 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL----TEQIDVRKGNGLAVIE---------   86 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCC---------
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEecchhhccC---------
Confidence            467899999999999999999986  4899999999999999999999985    3568998888766522         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                    ...+||+|+.+-+--  +....++......|++++
T Consensus        87 --------------~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~  119 (244)
T 3gnl_A           87 --------------KKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVT  119 (244)
T ss_dssp             --------------GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCC
T ss_pred             --------------ccccccEEEEeCCch--HHHHHHHHHHHHHhCCCC
Confidence                          122599988654433  344556666666776543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.11  E-value=4e-10  Score=103.43  Aligned_cols=114  Identities=13%  Similarity=0.188  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      +.+..+.+++....   . .++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.++.|+..++.     .++.+
T Consensus        93 ~~te~l~~~~l~~~---~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~v~~  163 (276)
T 2b3t_A           93 PDTECLVEQALARL---P-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHI  163 (276)
T ss_dssp             TTHHHHHHHHHHHS---C-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEE
T ss_pred             chHHHHHHHHHHhc---c-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEE
Confidence            45667777777664   2 46789999999999999999976  67999999999999999999998863     46888


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEec-------------cccCc------------ccHHH
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD-------------VIYSD------------DLTDA  232 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD-------------viY~~------------~~~~~  232 (335)
                      ...||.+..                        ..++||+|++..             ++++.            .....
T Consensus       164 ~~~d~~~~~------------------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~  219 (276)
T 2b3t_A          164 LQSDWFSAL------------------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVH  219 (276)
T ss_dssp             ECCSTTGGG------------------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHH
T ss_pred             EEcchhhhc------------------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHH
Confidence            888876531                        124799999973             33322            24577


Q ss_pred             HHHHHHHhccCCCc
Q 019839          233 LFHTLKRLMPLGSK  246 (335)
Q Consensus       233 L~~tl~~lL~~~~~  246 (335)
                      +++.+.++|+++|.
T Consensus       220 ~l~~~~~~LkpgG~  233 (276)
T 2b3t_A          220 IIEQSRNALVSGGF  233 (276)
T ss_dssp             HHHHHGGGEEEEEE
T ss_pred             HHHHHHHhcCCCCE
Confidence            88889999999774

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.11  E-value=3.8e-10  Score=100.52  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +.+++....     -++.+|||+|||+|..++.+++. .+|+++|+++.+++.+++|+..+.      .++.+...|..+
T Consensus        23 ~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~   90 (243)
T 3d2l_A           23 WVAWVLEQV-----EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMRE   90 (243)
T ss_dssp             HHHHHHHHS-----CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGGG
T ss_pred             HHHHHHHHc-----CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChhh
Confidence            445555543     34689999999999999999988 899999999999999999988764      346666666544


Q ss_pred             CCCCCccCCCCCccccccccCcchhhccCCccEEEEe-ccccCc---ccHHHHHHHHHHhccCCCcce
Q 019839          185 PWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA-DVIYSD---DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlas-DviY~~---~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..                        ..++||+|++. +++++.   +....+++.+.++|+|+|..+
T Consensus        91 ~~------------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  134 (243)
T 3d2l_A           91 LE------------------------LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL  134 (243)
T ss_dssp             CC------------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cC------------------------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEE
Confidence            31                        12489999997 488765   567788999999999988544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.11  E-value=7.2e-11  Score=103.74  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++   .        ++.+...++.+.....         
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~~~---------  110 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G--------AGEVHLASYAQLAEAK---------  110 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C--------SSCEEECCHHHHHTTC---------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c--------ccccchhhHHhhcccc---------
Confidence            4568999999999999999999999999999999999999877   1        1222333322210000         


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                .....+||+|+++.+++ ......+++.+.++|+++|..+
T Consensus       111 ----------~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~  149 (227)
T 3e8s_A          111 ----------VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALV  149 (227)
T ss_dssp             ----------SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEE
T ss_pred             ----------cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEE
Confidence                      01234699999999999 7788899999999999988543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.10  E-value=1.2e-09  Score=96.28  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+++.+++.++.|+..++     ..++.+...|+.+...          
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~----------  105 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTD----------  105 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGG----------
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHh----------
Confidence            5779999999999999999988  5799999999999999999999886     3578888888765210          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~lL~~~~~  246 (335)
                                 .-..+.||+|++.-......        ....+++.+.++|+++|.
T Consensus       106 -----------~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  151 (214)
T 1yzh_A          106 -----------YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE  151 (214)
T ss_dssp             -----------TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred             -----------hcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcE
Confidence                       00134799999874322111        246799999999999884

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.10  E-value=4.6e-11  Score=109.08  Aligned_cols=113  Identities=17%  Similarity=0.216  Sum_probs=79.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCC------------------------
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSH------------------------  171 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~------------------------  171 (335)
                      ...+|++|||||||+|+.++.++..+. +|+++|+++.+++.++++++.+......                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            346889999999999988887777764 7999999999999999988765311100                        


Q ss_pred             CCeeE-EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCc
Q 019839          172 QGSVH-VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       172 ~~~v~-v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~  246 (335)
                      ..++. +...|-.+..+..                   ....++||+|+++-++++.    +....+++.+.++|+|||.
T Consensus       132 ~~~i~~~~~~D~~~~~~~~-------------------~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~  192 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLA-------------------PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH  192 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTT-------------------TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             HhhhheEEeccccCCCCCC-------------------ccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence            01122 5555544421100                   0013489999999998763    4556788999999999885


Q ss_pred             ce
Q 019839          247 KV  248 (335)
Q Consensus       247 ~~  248 (335)
                      .+
T Consensus       193 li  194 (263)
T 2a14_A          193 LV  194 (263)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.10  E-value=2.5e-10  Score=99.83  Aligned_cols=92  Identities=15%  Similarity=0.041  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ++.+|||+|||+|..+..+   +. +|+++|+++.+++.++++.          .++.+...|..+..            
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~------------   90 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALP------------   90 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCC------------
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCC------------
Confidence            7889999999999888776   66 9999999999999998876          12455555554321            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...++||+|++..++++.+....+++.+.++|+++|..
T Consensus        91 -----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  128 (211)
T 2gs9_A           91 -----------FPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGAL  128 (211)
T ss_dssp             -----------SCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------CCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEE
Confidence                       02348999999999999999999999999999998743

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.10  E-value=7.1e-11  Score=106.66  Aligned_cols=113  Identities=16%  Similarity=0.206  Sum_probs=84.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCC-------------C-----------
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFS-------------H-----------  171 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~-------------~-----------  171 (335)
                      ...++++|||||||+|..++.+++.+. +|+++|+++.+++.+++++..+.....             .           
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            346789999999999999999998886 999999999999999988765421000             0           


Q ss_pred             CCee-EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc----CcccHHHHHHHHHHhccCCCc
Q 019839          172 QGSV-HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY----SDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       172 ~~~v-~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY----~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ..++ .+...|..+..+..                   ....++||+|+++.+++    +.+....+++.+.++|+|||.
T Consensus       133 ~~~v~~~~~~d~~~~~~~~-------------------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~  193 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG-------------------GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGF  193 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT-------------------TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhheeEEEeeeccCCCCC-------------------ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcE
Confidence            0125 67777766542100                   00125899999999999    767888999999999999885


Q ss_pred             ce
Q 019839          247 KV  248 (335)
Q Consensus       247 ~~  248 (335)
                      .+
T Consensus       194 li  195 (265)
T 2i62_A          194 LV  195 (265)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.09  E-value=1.8e-10  Score=104.74  Aligned_cols=99  Identities=15%  Similarity=0.091  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..+.+|||+|||+|..++.+|..  +.+|+++|.++.+++.++.|+..++.     .++.+...++.+....        
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l-----~~v~~~~~d~~~~~~~--------  145 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL-----KGARALWGRAEVLARE--------  145 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEECCHHHHTTS--------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CceEEEECcHHHhhcc--------
Confidence            46889999999999999999987  57999999999999999999998873     4588887776543110        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ....++||+|++..+    ...+.+++.+.++|+++|.
T Consensus       146 ------------~~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~  179 (249)
T 3g89_A          146 ------------AGHREAYARAVARAV----APLCVLSELLLPFLEVGGA  179 (249)
T ss_dssp             ------------TTTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEE
T ss_pred             ------------cccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeE
Confidence                        001258999998643    4567899999999999884

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.09  E-value=4.5e-10  Score=97.26  Aligned_cols=102  Identities=14%  Similarity=0.011  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++.+|||+|||+|..++.+++. +  .+|+++|+++.+++.+++|+..++.    ..++.+...|..+...        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------   88 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRVTLIKDGHQNMDK--------   88 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGEEEECSCGGGGGG--------
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHhh--------
Confidence            46789999999999999999887 2  5999999999999999999998763    2568888777544310        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ...++||+|++.-.++.         ......+++.+.++|+++|.
T Consensus        89 --------------~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~  134 (197)
T 3eey_A           89 --------------YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGI  134 (197)
T ss_dssp             --------------TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             --------------hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCE
Confidence                          11258999998754422         22445689999999999874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.09  E-value=1.2e-10  Score=104.69  Aligned_cols=99  Identities=12%  Similarity=-0.037  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++.+|||+|||+|..++.+|..  +.+|+++|+++.+++.++.|+..++.     .++.+...|..+....         
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~---------  135 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQR---------  135 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTC---------
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEeccHHHhccc---------
Confidence            6789999999999999999964  67999999999999999999998863     4578877765432100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ....++||+|++..+    .....+++.+.++|+++|..
T Consensus       136 -----------~~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l  170 (240)
T 1xdz_A          136 -----------KDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLF  170 (240)
T ss_dssp             -----------TTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEE
T ss_pred             -----------ccccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEE
Confidence                       001348999998763    55788999999999998743

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.09  E-value=2.9e-10  Score=105.36  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++.+|||||||+|..++.+++.+.+|+++|+++.+++.+++++..+....  ..++.+...|..+..             
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~v~~~~~d~~~~~-------------  146 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV--RDRCTLVQGDMSAFA-------------  146 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH--HTTEEEEECBTTBCC-------------
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc--ccceEEEeCchhcCC-------------
Confidence            44599999999999999999999999999999999999999987653100  146888888877641             


Q ss_pred             cccccCcchhhccCCccEEEEe-ccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          200 ERYSWNSSELKEVQRASVLLAA-DVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlas-DviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ..++||+|+++ .++++..  ....+++.+.++|+|+|..+
T Consensus       147 -----------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~  187 (299)
T 3g2m_A          147 -----------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL  187 (299)
T ss_dssp             -----------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -----------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                       13589998865 5555543  46889999999999988543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.09  E-value=7.1e-10  Score=102.77  Aligned_cols=115  Identities=17%  Similarity=0.314  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      +.+..|.+++....   ...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++.|+..|+.    ..++.+.
T Consensus       106 ~~te~lv~~~l~~~---~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l----~~~v~~~  178 (284)
T 1nv8_A          106 PETEELVELALELI---RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVR  178 (284)
T ss_dssp             TTHHHHHHHHHHHH---HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEE
T ss_pred             hhHHHHHHHHHHHh---cccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEE
Confidence            34556666666542   1125679999999999999999998 78999999999999999999999874    2458999


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCc---cEEEEe------------ccccCccc-------HHHHHHH
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRA---SVLLAA------------DVIYSDDL-------TDALFHT  236 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f---DlIlas------------DviY~~~~-------~~~L~~t  236 (335)
                      ..||.+..                         .++|   |+|++.            ++.|.+..       .-.+++.
T Consensus       179 ~~D~~~~~-------------------------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~  233 (284)
T 1nv8_A          179 KGEFLEPF-------------------------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE  233 (284)
T ss_dssp             ESSTTGGG-------------------------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH
T ss_pred             ECcchhhc-------------------------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH
Confidence            99887631                         1267   999996            33332211       1257888


Q ss_pred             HH-HhccCCCc
Q 019839          237 LK-RLMPLGSK  246 (335)
Q Consensus       237 l~-~lL~~~~~  246 (335)
                      +. +.++++|.
T Consensus       234 i~~~~l~pgG~  244 (284)
T 1nv8_A          234 FFGRYDTSGKI  244 (284)
T ss_dssp             HHHHCCCTTCE
T ss_pred             HHHhcCCCCCE
Confidence            88 99998874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.08  E-value=2.7e-10  Score=99.28  Aligned_cols=109  Identities=11%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+.+++....     .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.++.|+..       ..++.+...|.
T Consensus        31 ~~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~   98 (215)
T 2pxx_A           31 SFRALLEPEL-----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDV   98 (215)
T ss_dssp             HHHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCT
T ss_pred             HHHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcch
Confidence            3566665542     4678999999999999999999876 899999999999999988753       13567777776


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC---------------cccHHHHHHHHHHhccCCCcc
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~---------------~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      .+...                       ..++||+|++..++.+               ......+++.+.++|+++|..
T Consensus        99 ~~~~~-----------------------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  155 (215)
T 2pxx_A           99 RKLDF-----------------------PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF  155 (215)
T ss_dssp             TSCCS-----------------------CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hcCCC-----------------------CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEE
Confidence            55310                       1347999999887743               235678999999999998743

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.08  E-value=1.6e-09  Score=92.31  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      +.+..|.+++...     ..++.+|||+|||+|..++.+++.+ +|+++|+++.+++.      .        .++.+..
T Consensus         8 ~~~~~l~~~l~~~-----~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~--------~~~~~~~   67 (170)
T 3q87_B            8 EDTYTLMDALERE-----GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------H--------RGGNLVR   67 (170)
T ss_dssp             HHHHHHHHHHHHH-----TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------C--------SSSCEEE
T ss_pred             ccHHHHHHHHHhh-----cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------c--------cCCeEEE
Confidence            4566677775432     2467899999999999999999999 99999999998877      1        2456677


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc---------HHHHHHHHHHhccCCCc
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL---------TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~---------~~~L~~tl~~lL~~~~~  246 (335)
                      .|+.+..                        ..++||+|+++..++....         ...+++.+.+.+ ++|.
T Consensus        68 ~d~~~~~------------------------~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~  118 (170)
T 3q87_B           68 ADLLCSI------------------------NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGM  118 (170)
T ss_dssp             CSTTTTB------------------------CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSE
T ss_pred             CChhhhc------------------------ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCE
Confidence            7766531                        1258999999776664222         234555555555 7663

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.08  E-value=2.9e-11  Score=105.41  Aligned_cols=118  Identities=10%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      +..+.+++....  ....++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..++.      ++.+..
T Consensus        14 ~~~~~~~~~~~l--~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~   85 (215)
T 4dzr_A           14 TEVLVEEAIRFL--KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA------VVDWAA   85 (215)
T ss_dssp             HHHHHHHHHHHH--TTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------------CCH
T ss_pred             HHHHHHHHHHHh--hhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC------ceEEEE
Confidence            455666666654  12257889999999999999999998  55999999999999999999987751      344444


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccH--------------------------HHH
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--------------------------DAL  233 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--------------------------~~L  233 (335)
                      .|+.+..+.                   .....++||+|++...++.....                          ..+
T Consensus        86 ~d~~~~~~~-------------------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (215)
T 4dzr_A           86 ADGIEWLIE-------------------RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRM  146 (215)
T ss_dssp             HHHHHHHHH-------------------HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHH
T ss_pred             cchHhhhhh-------------------hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHH
Confidence            444331000                   00113689999996555433221                          677


Q ss_pred             HHHHHHhccCCCc
Q 019839          234 FHTLKRLMPLGSK  246 (335)
Q Consensus       234 ~~tl~~lL~~~~~  246 (335)
                      ++.+.++|+++|.
T Consensus       147 l~~~~~~LkpgG~  159 (215)
T 4dzr_A          147 AALPPYVLARGRA  159 (215)
T ss_dssp             HTCCGGGBCSSSE
T ss_pred             HHHHHHHhcCCCe
Confidence            8888899999885

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.08  E-value=6.8e-10  Score=100.16  Aligned_cols=99  Identities=11%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|++.++.    ..++.+...|+.+..+      
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~------  159 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRVTIKLKDIYEGIE------  159 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTEEEECSCGGGCCC------
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCceEEEECchhhccC------
Confidence            4467899999999999999999988   68999999999999999999998863    2448888887764421      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                        ..+||+|++     +......+++.+.++|+++|..+
T Consensus       160 ------------------~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~  191 (255)
T 3mb5_A          160 ------------------EENVDHVIL-----DLPQPERVVEHAAKALKPGGFFV  191 (255)
T ss_dssp             ------------------CCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEE
T ss_pred             ------------------CCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEE
Confidence                              247999998     45556678999999999987543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.07  E-value=1.1e-09  Score=97.19  Aligned_cols=111  Identities=12%  Similarity=0.058  Sum_probs=83.7

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +.|....++. ++....   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..++       ++.
T Consensus        51 ~~~~~~~~~~-~~~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~v~  119 (231)
T 1vbf_A           51 INTTALNLGI-FMLDEL---DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-------NIK  119 (231)
T ss_dssp             EEECCHHHHH-HHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-------SEE
T ss_pred             CccCCHHHHH-HHHHhc---CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-------CeE
Confidence            4455554444 444442   34578899999999999999999999999999999999999999986542       567


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      +...|..+..                       ...++||+|++..++++..      +.+.++|+++|..
T Consensus       120 ~~~~d~~~~~-----------------------~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l  161 (231)
T 1vbf_A          120 LILGDGTLGY-----------------------EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIM  161 (231)
T ss_dssp             EEESCGGGCC-----------------------GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEE
T ss_pred             EEECCccccc-----------------------ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEE
Confidence            7777665421                       1235899999999998654      4688899998754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.07  E-value=4.6e-10  Score=111.51  Aligned_cols=112  Identities=11%  Similarity=0.195  Sum_probs=84.9

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      +.+.+....   ...++++|||+|||+|.+++.+++.+ .+|+++|+++ +++.+++|+..|+.    ..++.+...|+.
T Consensus       146 ~~~~il~~l---~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v~~~~~d~~  217 (480)
T 3b3j_A          146 YQRAILQNH---TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVE  217 (480)
T ss_dssp             HHHHHHHTG---GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC----TTTEEEEESCTT
T ss_pred             HHHHHHHhh---hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcEEEEECchh
Confidence            344455443   34578999999999999999999986 5999999998 99999999999874    367899999887


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +..                        ..++||+|++.-++|+.  +.....+..+.++|+++|..+
T Consensus       218 ~~~------------------------~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li  260 (480)
T 3b3j_A          218 EVS------------------------LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF  260 (480)
T ss_dssp             TCC------------------------CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred             hCc------------------------cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence            631                        12479999997776753  233344556788999988554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.07  E-value=1.1e-10  Score=104.49  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .++.+|||||||+|..++.+++.+ .+|+++|+++.+++.+++|+..+.      .++.+...|+.+..++         
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~---------  123 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPT---------  123 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGG---------
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhcc---------
Confidence            367899999999999999998865 489999999999999999887654      4677777776543100         


Q ss_pred             cccccccCcchhhccCCccEEEE-ecccc----CcccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLA-ADVIY----SDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIla-sDviY----~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  -..++||+|++ .-.+.    +....+.+++.+.++|+|+|..
T Consensus       124 ------------~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l  166 (236)
T 1zx0_A          124 ------------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             ------------SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             ------------cCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEE
Confidence                        01358999999 44321    2234457799999999998843

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.07  E-value=2.1e-09  Score=96.16  Aligned_cols=100  Identities=14%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..++.    ..++.+...|+.+...         
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~---------  154 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL----GKNVKFFNVDFKDAEV---------  154 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC----CTTEEEECSCTTTSCC---------
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC----CCcEEEEEcChhhccc---------
Confidence            445788999999999999999998888999999999999999999988753    2467777777665420         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ....||+|++     +......+++.+.++|+++|..+
T Consensus       155 --------------~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~  187 (248)
T 2yvl_A          155 --------------PEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVG  187 (248)
T ss_dssp             --------------CTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEE
T ss_pred             --------------CCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEE
Confidence                          1247999997     34455678899999999988543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.07  E-value=7.1e-10  Score=106.43  Aligned_cols=73  Identities=16%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..|..++.+..    ...+.+|||||||+|..++.+|+.+.+|+++|+++.+++.+++|++.|+.     .++.+...|
T Consensus       199 ~~~l~~~~~~~~----~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-----~~v~~~~~d  269 (369)
T 3bt7_A          199 NIQMLEWALDVT----KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-----DNVQIIRMA  269 (369)
T ss_dssp             HHHHHHHHHHHT----TTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-----CSEEEECCC
T ss_pred             HHHHHHHHHHHh----hcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECC
Confidence            356777776653    23478999999999999999999888999999999999999999999973     467777666


Q ss_pred             CC
Q 019839          182 WM  183 (335)
Q Consensus       182 W~  183 (335)
                      ..
T Consensus       270 ~~  271 (369)
T 3bt7_A          270 AE  271 (369)
T ss_dssp             SH
T ss_pred             HH
Confidence            43

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.06  E-value=7e-10  Score=105.15  Aligned_cols=105  Identities=13%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++++|||||||+|..++.+++.|++|+++|+++.+++.+++|+..|+..   ..++.+...|..+...            
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~---~~~v~~i~~D~~~~l~------------  217 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQ------------  217 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHH------------
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECcHHHHHH------------
Confidence            5789999999999999999999889999999999999999999999742   1146776665443200            


Q ss_pred             cccccCcchhhccCCccEEEEeccccC----------cccHHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~----------~~~~~~L~~tl~~lL~~~~~  246 (335)
                             .......+||+|++.-..|.          ......+++.+.++|+++|.
T Consensus       218 -------~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~  267 (332)
T 2igt_A          218 -------REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL  267 (332)
T ss_dssp             -------HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred             -------HHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcE
Confidence                   00001358999998433222          23466788999999999884

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.06  E-value=6.6e-10  Score=102.00  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..+ +     ..++.+...|+.+..+     
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~~~-----  176 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFIS-----  176 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCCC-----
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchhccCc-----
Confidence            3457889999999999999999987   689999999999999999999887 5     3568888887765311     


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                         .++||+|++     +.+....+++.+.++|+++|..
T Consensus       177 -------------------~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l  207 (275)
T 1yb2_A          177 -------------------DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVA  207 (275)
T ss_dssp             -------------------SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEE
T ss_pred             -------------------CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEE
Confidence                               247999998     4456678899999999998743

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.05  E-value=4.9e-10  Score=103.32  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +|++|||+|||+|..++.+|+.++ +|+++|+++.+++.+++|+..|+.    ..++.+...|..+...           
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~-----------  189 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-----------  189 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-----------
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcc-----------
Confidence            588999999999999999999976 699999999999999999999985    2457788877665421           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                   ..+||+|++.. .   .....++..+.++|++||..
T Consensus       190 -------------~~~fD~Vi~~~-p---~~~~~~l~~~~~~LkpgG~l  221 (278)
T 2frn_A          190 -------------ENIADRILMGY-V---VRTHEFIPKALSIAKDGAII  221 (278)
T ss_dssp             -------------CSCEEEEEECC-C---SSGGGGHHHHHHHEEEEEEE
T ss_pred             -------------cCCccEEEECC-c---hhHHHHHHHHHHHCCCCeEE
Confidence                         34899999842 2   33356788899999998743

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.05  E-value=1.2e-09  Score=101.68  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             CCCCCCeEEEEcCccC-HHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtG-L~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...+|.+|||+|||+| ++++.+|+. +++|+++|+++++++.+++|++..+.     .++.+...|-.+.         
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-----~~v~~v~gDa~~l---------  184 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-----DGVNVITGDETVI---------  184 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-----CSEEEEESCGGGG---------
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEECchhhC---------
Confidence            4468899999999987 777888875 88999999999999999999987652     4677776653321         


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      ..+.||+|+.+-.   .+....+++.+.+.|+|||..+
T Consensus       185 ----------------~d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lv  219 (298)
T 3fpf_A          185 ----------------DGLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRII  219 (298)
T ss_dssp             ----------------GGCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEE
T ss_pred             ----------------CCCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEE
Confidence                            1358999998654   4677789999999999998543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.05  E-value=9.9e-10  Score=97.54  Aligned_cols=107  Identities=12%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .+.+++....     .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++.          .++.+...|..
T Consensus        29 ~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~   93 (239)
T 3bxo_A           29 DIADLVRSRT-----PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----------PDATLHQGDMR   93 (239)
T ss_dssp             HHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----------TTCEEEECCTT
T ss_pred             HHHHHHHHhc-----CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----------CCCEEEECCHH
Confidence            4555555442     46789999999999999999998889999999999999998763          23566666665


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEE-eccccCc---ccHHHHHHHHHHhccCCCccee
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA-ADVIYSD---DLTDALFHTLKRLMPLGSKKVL  249 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla-sDviY~~---~~~~~L~~tl~~lL~~~~~~~~  249 (335)
                      +..                        ..++||+|++ .+++++.   +....+++.+.++|+++|..++
T Consensus        94 ~~~------------------------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  139 (239)
T 3bxo_A           94 DFR------------------------LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVV  139 (239)
T ss_dssp             TCC------------------------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             Hcc------------------------cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            431                        1348999995 5587765   5667899999999999886543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.05  E-value=5e-09  Score=92.62  Aligned_cols=101  Identities=10%  Similarity=0.041  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+++.+++.+++|+..++     ..++.+...|..+...          
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~l~~----------  102 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTD----------  102 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHH----------
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHh----------
Confidence            5679999999999999999987  6799999999999999999999876     3467777776544100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~lL~~~~~  246 (335)
                                 .-..+.||.|++.-...+..        ....+++.+.++|++||.
T Consensus       103 -----------~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~  148 (213)
T 2fca_A          103 -----------VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGS  148 (213)
T ss_dssp             -----------HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred             -----------hcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCE
Confidence                       00134789887642211111        147899999999999884

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=1.1e-09  Score=96.69  Aligned_cols=104  Identities=11%  Similarity=0.080  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+..      
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~------  132 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKIGLRLSPAKDTLAEL------  132 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHH------
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeCCHHHHHHHh------
Confidence            46789999999999999999987   68999999999999999999988764    245777777654321000      


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                             .    .....++||+|+..-   .......+++.+.++|++||.
T Consensus       133 -------~----~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~  169 (225)
T 3tr6_A          133 -------I----HAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREGGL  169 (225)
T ss_dssp             -------H----TTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEE
T ss_pred             -------h----hccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCCcE
Confidence                   0    000015899999522   345677899999999999873

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.04  E-value=6.6e-10  Score=98.47  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||||||+|..++.+|+.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+...     
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~l~~~~-----  127 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTILNGASQDLIPQLK-----  127 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHGGGTT-----
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCceEEEECCHHHHHHHHH-----
Confidence            46789999999999999999985   67999999999999999999998874    2468888777543211000     


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  .....++||+|++.-...+......++..+ ++|+|+|.
T Consensus       128 ------------~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~  165 (221)
T 3u81_A          128 ------------KKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTV  165 (221)
T ss_dssp             ------------TTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCE
T ss_pred             ------------HhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeE
Confidence                        000125899999865444333333455556 89999884

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.04  E-value=1.5e-09  Score=104.86  Aligned_cols=105  Identities=7%  Similarity=-0.035  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||+|||+|..++.+|+.+ ++|+++|+++.+++.+++|++.|+..   ..++.+...|..+..+.         
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~---~~~v~~~~~D~~~~l~~---------  278 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDYFKY---------  278 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHHHHH---------
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHH---------
Confidence            478899999999999999999976 49999999999999999999999742   11677777765432100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~  245 (335)
                                ......+||+|++.-..+.         ......++..+.++|+|+|
T Consensus       279 ----------~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG  325 (385)
T 2b78_A          279 ----------ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENG  325 (385)
T ss_dssp             ----------HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEE
T ss_pred             ----------HHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      0011348999997433321         1234456777789999877

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.03  E-value=1.2e-08  Score=88.98  Aligned_cols=92  Identities=15%  Similarity=0.107  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.++.|+..|+     . ++.+...|+.+.           
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~~-----------  109 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-----G-KFKVFIGDVSEF-----------  109 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-----T-SEEEEESCGGGC-----------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-----C-CEEEEECchHHc-----------
Confidence            4578999999999999999999986 479999999999999999998875     2 567776665442           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLM  241 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL  241 (335)
                                     ..+||+|++.-.++..  .....+++.+.+++
T Consensus       110 ---------------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          110 ---------------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             ---------------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred             ---------------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc
Confidence                           1379999986665443  23455667777776

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.03  E-value=1.4e-09  Score=96.16  Aligned_cols=102  Identities=19%  Similarity=0.139  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||||||+|..++.+|+.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+..      
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~------  126 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRVEVRTGLALDSLQQI------  126 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHH------
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHH------
Confidence            46789999999999999999988   68999999999999999999988764    245888777654321100      


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  .....++||+|++.-.   ......+++.+.++|++||
T Consensus       127 ------------~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG  161 (223)
T 3duw_A          127 ------------ENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGT  161 (223)
T ss_dssp             ------------HHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTC
T ss_pred             ------------HhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCc
Confidence                        0000147999997432   4566789999999999988

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.03  E-value=1e-09  Score=102.90  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=82.7

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC---EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~---~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +...+....   ...+|.+|||+|||+|..++.+++.+.   +|+++|+++.+++.+++|+..++.     .++.+...|
T Consensus        63 ~~~~l~~~l---~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-----~~v~~~~~d  134 (317)
T 1dl5_A           63 LMALFMEWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCGD  134 (317)
T ss_dssp             HHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESC
T ss_pred             HHHHHHHhc---CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEECC
Confidence            344444443   345789999999999999999998854   499999999999999999988763     457888777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..+..+                       ..++||+|++..++.+..      +.+.++|+|+|..+
T Consensus       135 ~~~~~~-----------------------~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lv  172 (317)
T 1dl5_A          135 GYYGVP-----------------------EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVI  172 (317)
T ss_dssp             GGGCCG-----------------------GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEE
T ss_pred             hhhccc-----------------------cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEE
Confidence            655311                       235899999999988755      57788999988654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.03  E-value=2.9e-10  Score=108.00  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+++.+  .+|+++|+++.+++.+++|+..|+.      .+.+...|....            
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~------~~~~~~~d~~~~------------  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV------EGEVFASNVFSE------------  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC------CCEEEECSTTTT------------
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCEEEEcccccc------------
Confidence            46799999999999999999886  5899999999999999999998863      244455554332            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC-----cccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~-----~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                   ..++||+|++..++++     ......+++.+.++|+|+|..
T Consensus       258 -------------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l  299 (343)
T 2pjd_A          258 -------------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL  299 (343)
T ss_dssp             -------------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             -------------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEE
Confidence                         1348999999988774     345688999999999998743

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.02  E-value=1.6e-09  Score=97.53  Aligned_cols=99  Identities=15%  Similarity=-0.004  Sum_probs=79.2

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|+..+ +     ..++.+...|+.+...     
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~~~-----  162 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENVRFHLGKLEEAEL-----  162 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEEEESCGGGCCC-----
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCEEEEECchhhcCC-----
Confidence            4467889999999999999999988   579999999999999999999887 5     2567888777654310     


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                        ..+.||+|++     +......+++.+.++|+++|..+
T Consensus       163 ------------------~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~  195 (258)
T 2pwy_A          163 ------------------EEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLV  195 (258)
T ss_dssp             ------------------CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             ------------------CCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEE
Confidence                              1247999998     34455678999999999987543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=1.4e-09  Score=98.41  Aligned_cols=101  Identities=15%  Similarity=0.125  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||||||+|..++.+|+.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+.       
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~l~~-------  130 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRVTLREGPALQSLES-------  130 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHT-------
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHh-------
Confidence            46789999999999999999987   67999999999999999999998764    34688887775442110       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                   ....++||+|++. .  .......+++.+.++|++||.
T Consensus       131 -------------~~~~~~fD~V~~d-~--~~~~~~~~l~~~~~~LkpGG~  165 (248)
T 3tfw_A          131 -------------LGECPAFDLIFID-A--DKPNNPHYLRWALRYSRPGTL  165 (248)
T ss_dssp             -------------CCSCCCCSEEEEC-S--CGGGHHHHHHHHHHTCCTTCE
T ss_pred             -------------cCCCCCeEEEEEC-C--chHHHHHHHHHHHHhcCCCeE
Confidence                         0112489999973 2  355667889999999999883

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.01  E-value=4.5e-09  Score=100.62  Aligned_cols=100  Identities=13%  Similarity=0.153  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -.+.+|||+|||+|..++.+++.  +.+++++|+ +.+++.+++++...+.    ..++.+...|+.+..+         
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~p---------  266 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL----ADRCEILPGDFFETIP---------  266 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTTCCC---------
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc----CCceEEeccCCCCCCC---------
Confidence            45789999999999999999887  569999999 9999999999987653    3679999999874311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~~~~~~  248 (335)
                                      ..||+|++..++++.+..+  .+++.+.++|+|+|..+
T Consensus       267 ----------------~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~  304 (369)
T 3gwz_A          267 ----------------DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLL  304 (369)
T ss_dssp             ----------------SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ----------------CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence                            2799999999998876655  79999999999988544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.01  E-value=1.1e-09  Score=96.25  Aligned_cols=96  Identities=14%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.+..            .+...|..+...+          
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~------------~~~~~d~~~~~~~----------   88 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD------------HVVLGDIETMDMP----------   88 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS------------EEEESCTTTCCCC----------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC------------cEEEcchhhcCCC----------
Confidence            467899999999999999999888999999999999988875431            3444554432110          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...++||+|++++++++......+++.+.++|+++|..
T Consensus        89 -----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l  126 (230)
T 3cc8_A           89 -----------YEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVI  126 (230)
T ss_dssp             -----------SCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEE
T ss_pred             -----------CCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEE
Confidence                       01358999999999999888899999999999998743

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.01  E-value=2.4e-09  Score=100.42  Aligned_cols=101  Identities=15%  Similarity=0.201  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++.  +.+|+++|++ .+++.+++++..++.    ..++.+...|+.+...         
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~---------  229 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV----ASRYHTIAGSAFEVDY---------  229 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC----GGGEEEEESCTTTSCC---------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC----CcceEEEecccccCCC---------
Confidence            46789999999999999999887  6799999999 999999999987653    2468999988776411         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ...||+|++..++|+.  +....+++.+.++|+|+|..+
T Consensus       230 ---------------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  268 (335)
T 2r3s_A          230 ---------------GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVI  268 (335)
T ss_dssp             ---------------CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEE
Confidence                           1259999999999986  455789999999999987543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.01  E-value=4.4e-09  Score=92.96  Aligned_cols=122  Identities=14%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             cceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           95 GLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        95 G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      ....|..- ..++..+..... -..-+|.+|||||||+|..+..+++..  .+|+++|+++.+++.+..+++..      
T Consensus        32 ~y~~~~~~~~~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------  104 (210)
T 1nt2_A           32 GYREWVPWRSKLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------  104 (210)
T ss_dssp             TEEECCGGGCHHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------
T ss_pred             hhhhcChhHHHHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------
Confidence            45666442 223333333221 123478899999999999999888774  69999999999988777665532      


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                       .++.+...|......              +      ....++||+|++.  +.++.....+++.+.++|+|||.
T Consensus       105 -~~v~~~~~d~~~~~~--------------~------~~~~~~fD~V~~~--~~~~~~~~~~l~~~~r~LkpgG~  156 (210)
T 1nt2_A          105 -NNIIPLLFDASKPWK--------------Y------SGIVEKVDLIYQD--IAQKNQIEILKANAEFFLKEKGE  156 (210)
T ss_dssp             -SSEEEECSCTTCGGG--------------T------TTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             -CCeEEEEcCCCCchh--------------h------cccccceeEEEEe--ccChhHHHHHHHHHHHHhCCCCE
Confidence             234444433322100              0      0012589999985  33344555678999999999884

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.01  E-value=3.2e-10  Score=105.52  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHH--Hh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLS--RV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la--~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++.+|||+|||+|..++.+|  .. +.+|+++|+++.+++.+++|+..++.    ..++.+...|+.+...        
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------  184 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQITLHRQDAWKLDT--------  184 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEECCGGGCCC--------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECchhcCCc--------
Confidence            568899999999999999885  22 57999999999999999999987653    3458888888765411        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHH---HHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD---ALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~---~L~~tl~~lL~~~~~~  247 (335)
                                      .++||+|++..++++....+   .+++.+.++|+|||..
T Consensus       185 ----------------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  223 (305)
T 3ocj_A          185 ----------------REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGAL  223 (305)
T ss_dssp             ----------------CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEE
Confidence                            15899999999998765444   4899999999998743

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.01  E-value=7.3e-10  Score=98.50  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|    .      .++.+...|+.+..+.          
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~------~~~~~~~~d~~~~~~~----------  106 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----A------PHADVYEWNGKGELPA----------  106 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----C------TTSEEEECCSCSSCCT----------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----C------CCceEEEcchhhccCC----------
Confidence            4678999999999999999999999999999999999999988    1      3577888888643221          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                 ...++||+|+++      .....+++.+.++|+|+|.
T Consensus       107 -----------~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~  137 (226)
T 3m33_A          107 -----------GLGAPFGLIVSR------RGPTSVILRLPELAAPDAH  137 (226)
T ss_dssp             -----------TCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEE
T ss_pred             -----------cCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcE
Confidence                       013589999997      3455778899999999873

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.01  E-value=3.5e-10  Score=102.63  Aligned_cols=93  Identities=20%  Similarity=0.216  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++...         +  +...|..+..             
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~---------~--~~~~d~~~~~-------------  109 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK---------N--VVEAKAEDLP-------------  109 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS---------C--EEECCTTSCC-------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC---------C--EEECcHHHCC-------------
Confidence            788999999999999999999999999999999999999877431         1  3444443321             


Q ss_pred             cccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~~~  246 (335)
                                ...++||+|++..++++. .....+++.+.++|+++|.
T Consensus       110 ----------~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  147 (260)
T 2avn_A          110 ----------FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGL  147 (260)
T ss_dssp             ----------SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEE
T ss_pred             ----------CCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeE
Confidence                      013479999998866543 5689999999999999874

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.00  E-value=2.5e-09  Score=102.05  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -++.+|||+|||+|..++.+++.  +.+++++|+ +.+++.+++|+..++.    ..++.+...|+.+..+         
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~---------  246 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPLP---------  246 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCS---------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCcCC---------
Confidence            36789999999999999999887  469999999 9999999999987753    3478898888765311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~~  248 (335)
                                      ..||+|++..++++....  ..+++.+.++|+|+|..+
T Consensus       247 ----------------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  284 (374)
T 1qzz_A          247 ----------------VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLL  284 (374)
T ss_dssp             ----------------CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                            249999999999876554  489999999999987544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.00  E-value=4.6e-09  Score=99.95  Aligned_cols=101  Identities=11%  Similarity=0.079  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..++.+++.  +.+|+++|+ +.+++.+++|+..++.    ..++.+...|+.+...        
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------  254 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKESY--------  254 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTEEEEECCTTTSCC--------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC----CCCEEEEeCccccCCC--------
Confidence            346789999999999999999987  569999999 9999999999987653    3468888888776411        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ..+|+|+++.++++...  ...+++.+.++|+|+|..+
T Consensus       255 -----------------~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~  292 (359)
T 1x19_A          255 -----------------PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLL  292 (359)
T ss_dssp             -----------------CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             -----------------CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                             13499999999987655  7889999999999988543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.00  E-value=2.7e-09  Score=110.62  Aligned_cols=153  Identities=17%  Similarity=0.155  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||||||+|..++.+++.|+ +|+++|+++.+++.+++|++.|+..   ..++.+...|..+..           
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~---~~~v~~i~~D~~~~l-----------  603 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT---GRAHRLIQADCLAWL-----------  603 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---STTEEEEESCHHHHH-----------
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHH-----------
Confidence            4789999999999999999998875 6999999999999999999999842   136777777644320           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC-----------cccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS-----------DDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSL  266 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~-----------~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~  266 (335)
                                 ....++||+|++.-..|.           ......++..+.++|+++|  .     +++++..+. |..
T Consensus       604 -----------~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG--~-----L~~s~~~~~-~~~  664 (703)
T 3v97_A          604 -----------REANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--T-----IMFSNNKRG-FRM  664 (703)
T ss_dssp             -----------HHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEE--E-----EEEEECCTT-CCC
T ss_pred             -----------HhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCc--E-----EEEEECCcc-ccc
Confidence                       012358999998443321           2456678899999999977  3     445554332 211


Q ss_pred             cchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCCCCccccccCCCCceEEEEEEe
Q 019839          267 NDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQIKR  330 (335)
Q Consensus       267 ~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~~pq~~~~yer~~~lelw~i~~  330 (335)
                      .            ...+.+            .++..+.|.....|.-|..  ..+--.+|.|+.
T Consensus       665 ~------------~~~l~~------------~g~~~~~i~~~~lp~df~~--~~~ih~~w~i~~  702 (703)
T 3v97_A          665 D------------LDGLAK------------LGLKAQEITQKTLSQDFAR--NRQIHNCWLITA  702 (703)
T ss_dssp             C------------HHHHHH------------TTEEEEECTTTTCCGGGTT--CSSCCEEEEEEE
T ss_pred             C------------HHHHHH------------cCCceeeeeeccCCCCCCC--CCcceEEEEEee
Confidence            1            122221            3677777776667876621  123456788864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.99  E-value=8.7e-09  Score=91.84  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...+.+|||+|||+|..++.+++.   +.+|++.|+++.+++.+..++..|       .++.+...|..+....      
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~------  141 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKY------  141 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGG------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhh------
Confidence            346889999999999999999987   279999999999998888888876       2466666665542100      


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ....++||+|++ |+. .......++..+.++|+|+|.
T Consensus       142 --------------~~~~~~~D~V~~-~~~-~~~~~~~~~~~~~~~LkpgG~  177 (233)
T 2ipx_A          142 --------------RMLIAMVDVIFA-DVA-QPDQTRIVALNAHTFLRNGGH  177 (233)
T ss_dssp             --------------GGGCCCEEEEEE-CCC-CTTHHHHHHHHHHHHEEEEEE
T ss_pred             --------------cccCCcEEEEEE-cCC-CccHHHHHHHHHHHHcCCCeE
Confidence                          012358999998 443 444556678889999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.99  E-value=2e-09  Score=96.25  Aligned_cols=105  Identities=16%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      ++..+....   ...++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|+..++.     .++.+...|..
T Consensus        79 ~~~~~~~~l---~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~  150 (235)
T 1jg1_A           79 MVAIMLEIA---NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-----KNVHVILGDGS  150 (235)
T ss_dssp             HHHHHHHHH---TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGG
T ss_pred             HHHHHHHhc---CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEECCcc
Confidence            444444443   34578899999999999999999886 8999999999999999999988762     45777777752


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                      ...                       ....+||+|++..++.+..      +.+.++|+++|.
T Consensus       151 ~~~-----------------------~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~  184 (235)
T 1jg1_A          151 KGF-----------------------PPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGK  184 (235)
T ss_dssp             GCC-----------------------GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEE
T ss_pred             cCC-----------------------CCCCCccEEEECCcHHHHH------HHHHHhcCCCcE
Confidence            221                       1223699999998887543      367889999874

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.99  E-value=8.6e-10  Score=98.70  Aligned_cols=100  Identities=11%  Similarity=0.155  Sum_probs=79.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++++|||+|||+|..++.+|+.  +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+.        
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--------  137 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF----ENQVRIIEGNALEQFEN--------  137 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCHHH--------
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECCHHHHHHh--------
Confidence            46789999999999999999984  67999999999999999999988763    24688888776553110        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                   ...++||+|++.   ........+++.+.++|+++|.
T Consensus       138 -------------~~~~~fD~V~~~---~~~~~~~~~l~~~~~~LkpgG~  171 (232)
T 3ntv_A          138 -------------VNDKVYDMIFID---AAKAQSKKFFEIYTPLLKHQGL  171 (232)
T ss_dssp             -------------HTTSCEEEEEEE---TTSSSHHHHHHHHGGGEEEEEE
T ss_pred             -------------hccCCccEEEEc---CcHHHHHHHHHHHHHhcCCCeE
Confidence                         013589999954   2356677899999999999873

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.98  E-value=2.3e-09  Score=103.90  Aligned_cols=99  Identities=11%  Similarity=-0.080  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      +|++|||+|||+|..++.+|+.|+.|+++|+++.+++.+++|++.|+..    .  .+...|..+...            
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~----~--~~~~~D~~~~l~------------  275 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR----V--DIRHGEALPTLR------------  275 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC----C--EEEESCHHHHHH------------
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC----C--cEEEccHHHHHH------------
Confidence            4899999999999999999999888999999999999999999999742    2  333333222100            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCCc
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~~  246 (335)
                                ...+.||+|++.-..|..         .....++..+.++|+++|.
T Consensus       276 ----------~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~  321 (393)
T 4dmg_A          276 ----------GLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGF  321 (393)
T ss_dssp             ----------TCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             ----------HhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence                      012349999974333221         2446788888999999873

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.98  E-value=3.7e-09  Score=109.66  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHc--cCCCCCCCeeEEE
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLN--SGVFSHQGSVHVR  178 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N--~~~~~~~~~v~v~  178 (335)
                      ...+++....   ...++.+|||||||+|..++.+++.+   .+|+++|+++.+++.+++++...  ..... ..++.+.
T Consensus       708 qRle~LLelL---~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~g-l~nVefi  783 (950)
T 3htx_A          708 QRVEYALKHI---RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN-VKSATLY  783 (950)
T ss_dssp             HHHHHHHHHH---HHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSS-CSEEEEE
T ss_pred             HHHHHHHHHh---cccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcC-CCceEEE
Confidence            3344444432   22478999999999999999999997   79999999999999999877643  11111 3578888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccCC
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPLG  244 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~~  244 (335)
                      ..|..+...                       ..+.||+|++.+++++.....  .+++.+.++|+||
T Consensus       784 qGDa~dLp~-----------------------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          784 DGSILEFDS-----------------------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             ESCTTSCCT-----------------------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             ECchHhCCc-----------------------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            888766421                       235899999999999876544  5899999999996

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.98  E-value=1.6e-09  Score=96.52  Aligned_cols=101  Identities=11%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|..++.+|+.  +..|+++|+++.+++.+++|+..++     ..++.+...|-.+..+          
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~l~----------   98 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEVLH----------   98 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHHHH----------
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHH----------
Confidence            5679999999999999999987  4689999999999999999998876     3567777665332100          


Q ss_pred             cccccccCcchhhccCCccEEEEe--ccccCcccH------HHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAA--DVIYSDDLT------DALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlas--DviY~~~~~------~~L~~tl~~lL~~~~  245 (335)
                                ..-..+.||.|++.  |..+.....      ..+++.+.++|+|||
T Consensus        99 ----------~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG  144 (218)
T 3dxy_A           99 ----------KMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGG  144 (218)
T ss_dssp             ----------HHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEE
T ss_pred             ----------HHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCc
Confidence                      00123589999987  554444332      369999999999987

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.98  E-value=2.8e-10  Score=115.31  Aligned_cols=87  Identities=14%  Similarity=0.048  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||+|||.|+.+..+|+.|++|+++|.++.+++.++..+..++     ..++.++..+..+...           
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~~~~-----------  128 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEEVIA-----------  128 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHHHHH-----------
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHHHhh-----------
Confidence            356799999999999999999999999999999999999999988765     2456666655332100           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHH
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTD  231 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~  231 (335)
                                ....++||+|++..+++|....+
T Consensus       129 ----------~~~~~~fD~v~~~e~~ehv~~~~  151 (569)
T 4azs_A          129 ----------ALEEGEFDLAIGLSVFHHIVHLH  151 (569)
T ss_dssp             ----------HCCTTSCSEEEEESCHHHHHHHH
T ss_pred             ----------hccCCCccEEEECcchhcCCCHH
Confidence                      01235899999999999976554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.98  E-value=2e-09  Score=96.44  Aligned_cols=114  Identities=11%  Similarity=0.130  Sum_probs=78.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+...     
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~~~~~~-----  129 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL----ENKIFLKLGSALETLQVLI-----  129 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHH-----
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEEECCHHHHHHHHH-----
Confidence            46789999999999999999987   57999999999999999999988763    2347777665433110000     


Q ss_pred             CccccccccCcchhhcc-CCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~-~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                       .......|... .... ++||+|++.   +.......+++.+.++|+++|.
T Consensus       130 -~~~~~~~~~~~-f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L~pgG~  176 (239)
T 2hnk_A          130 -DSKSAPSWASD-FAFGPSSIDLFFLD---ADKENYPNYYPLILKLLKPGGL  176 (239)
T ss_dssp             -HCSSCCGGGTT-TCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEEE
T ss_pred             -hhccccccccc-ccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHcCCCeE
Confidence             00000012111 1112 589999976   3456677889999999999873

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.98  E-value=2.7e-09  Score=99.51  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCC--CCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFS--HQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~--~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ++.+|||||||+|..+..+++. +.+|+++|+++.+++.++.+...+.....  ...++.+...|..+.....       
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-------  106 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID-------  106 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT-------
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh-------
Confidence            6789999999999988888865 57999999999999999998876421000  0246788888776542100       


Q ss_pred             ccccccccCcchhh-ccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELK-EVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~-~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ... ..++||+|+++.++++.    +....+++.+.++|+|+|..+
T Consensus       107 -----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li  152 (313)
T 3bgv_A          107 -----------KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI  152 (313)
T ss_dssp             -----------TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             -----------hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence                       000 12489999999999765    446789999999999988543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.97  E-value=2.6e-09  Score=97.90  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=78.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|+..++.    ..++.+...|+.+..       
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~-------  177 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIKVRDISEGF-------  177 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEECCCGGGCC-------
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEEECCHHHcc-------
Confidence            4467889999999999999999987   57999999999999999999988753    246777777765431       


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ..+.||+|++     +.+....+++.+.++|+++|..+
T Consensus       178 -----------------~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~  210 (277)
T 1o54_A          178 -----------------DEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFA  210 (277)
T ss_dssp             -----------------SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEE
T ss_pred             -----------------cCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEE
Confidence                             1237999998     34555678899999999987443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.97  E-value=5.4e-09  Score=102.24  Aligned_cols=110  Identities=18%  Similarity=0.245  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +..|.+++.. .     .++.+|||||||+|..++.+|+.+.+|+++|+++.+++.+++|+..|+.     . +.+...|
T Consensus       278 ~e~l~~~~~~-~-----~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl-----~-v~~~~~d  345 (425)
T 2jjq_A          278 AVNLVRKVSE-L-----VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-----D-AEFEVAS  345 (425)
T ss_dssp             HHHHHHHHHH-H-----CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----C-EEEEECC
T ss_pred             HHHHHHHhhc-c-----CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECC
Confidence            4455555544 2     4678999999999999999999999999999999999999999999873     4 7788777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                      ..+..+                         .+||+|++. .-+. ...+.+++.+.. +++++  +     +|+++
T Consensus       346 ~~~~~~-------------------------~~fD~Vv~d-PPr~-g~~~~~~~~l~~-l~p~g--i-----vyvsc  387 (425)
T 2jjq_A          346 DREVSV-------------------------KGFDTVIVD-PPRA-GLHPRLVKRLNR-EKPGV--I-----VYVSC  387 (425)
T ss_dssp             TTTCCC-------------------------TTCSEEEEC-CCTT-CSCHHHHHHHHH-HCCSE--E-----EEEES
T ss_pred             hHHcCc-------------------------cCCCEEEEc-CCcc-chHHHHHHHHHh-cCCCc--E-----EEEEC
Confidence            665411                         179999983 2221 233456777765 56654  5     78876

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.97  E-value=2e-09  Score=99.59  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -+|.+|||+|||+|..|+.+|+.| ++|++.|+++.+++.+++|+++|+.    ..++.+...|-.+..           
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v----~~~v~~~~~D~~~~~-----------  188 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFP-----------  188 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCC-----------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCcHHHhc-----------
Confidence            468999999999999999999997 5999999999999999999999986    466888877755431           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                   ....||.|+.....+..    .++....+++++||
T Consensus       189 -------------~~~~~D~Vi~~~p~~~~----~~l~~a~~~lk~gG  219 (278)
T 3k6r_A          189 -------------GENIADRILMGYVVRTH----EFIPKALSIAKDGA  219 (278)
T ss_dssp             -------------CCSCEEEEEECCCSSGG----GGHHHHHHHEEEEE
T ss_pred             -------------cccCCCEEEECCCCcHH----HHHHHHHHHcCCCC
Confidence                         23479999976544333    45566667888876

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.97  E-value=1.8e-09  Score=96.33  Aligned_cols=99  Identities=11%  Similarity=0.005  Sum_probs=75.1

Q ss_pred             CCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          121 GIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.+|||||||+|..++.+|+.   +.+|+++|+++.+++.+++|++.++..   ..++.+...|..+..+.         
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~~i~~~~gda~~~l~~---------  124 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS---PSRVRFLLSRPLDVMSR---------  124 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHHHHGGG---------
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---cCcEEEEEcCHHHHHHH---------
Confidence            459999999999999999985   579999999999999999999987641   14677777654332100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...++||+|++.-   .......+++.+.++|+|||.
T Consensus       125 ------------~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~  158 (221)
T 3dr5_A          125 ------------LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGA  158 (221)
T ss_dssp             ------------SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEE
T ss_pred             ------------hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcE
Confidence                        0135899998742   235567789999999999874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.97  E-value=3.3e-09  Score=99.72  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+ +.+++.+++|+..++.    ..++.+...|+.+..           
T Consensus       167 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~-----------  230 (334)
T 2ip2_A          167 RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQEV-----------  230 (334)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTTCC-----------
T ss_pred             CCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCCCC-----------
Confidence            3389999999999999999887  569999999 9999999999876542    356888888877631           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..+||+|++..++++...  ...+++.+.++|+|+|..+
T Consensus       231 --------------~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~  269 (334)
T 2ip2_A          231 --------------PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVV  269 (334)
T ss_dssp             --------------CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             --------------CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                          137999999999986544  4489999999999988544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.96  E-value=1.1e-09  Score=98.87  Aligned_cols=46  Identities=22%  Similarity=0.197  Sum_probs=42.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHc
Q 019839          120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      ++.+|||+|||+|..++.+++.    +.+|+++|+++.+++.++.|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            5679999999999999999887    579999999999999999998766

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.96  E-value=1.9e-09  Score=99.09  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..++.+|+.+.  +|++.|.++.+++.+++|++.|+.     .++.+...|..+. +        
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-----~~~~~~~~d~~~~-~--------  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-----NNVIPILADNRDV-E--------  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-----SSEEEEESCGGGC-C--------
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEECChHHc-C--------
Confidence            35788999999999999999999854  999999999999999999999973     4566777665543 1        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEeee
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKR  261 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R  261 (335)
                                     ...+||+|++....    ....++..+.++|+++|  .     +|+++...
T Consensus       183 ---------------~~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG--~-----l~~s~~~~  222 (272)
T 3a27_A          183 ---------------LKDVADRVIMGYVH----KTHKFLDKTFEFLKDRG--V-----IHYHETVA  222 (272)
T ss_dssp             ---------------CTTCEEEEEECCCS----SGGGGHHHHHHHEEEEE--E-----EEEEEEEE
T ss_pred             ---------------ccCCceEEEECCcc----cHHHHHHHHHHHcCCCC--E-----EEEEEcCc
Confidence                           12479999885432    45567888889999876  3     55665444

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.96  E-value=4.9e-09  Score=98.58  Aligned_cols=99  Identities=14%  Similarity=0.062  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||+|||+|..++.+++.  +.++++.|+ +.+++.+++++...+.    ..++.+...|+.+..+          
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~p----------  233 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL----SGRAQVVVGSFFDPLP----------  233 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCC----------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc----CcCeEEecCCCCCCCC----------
Confidence            4579999999999999988876  468999999 9999999999887653    3679999998874311          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                     .+||+|++..++|+.+.  ...+++.+.++|+|+|..+
T Consensus       234 ---------------~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~  271 (332)
T 3i53_A          234 ---------------AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVL  271 (332)
T ss_dssp             ---------------CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             ---------------CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                           17999999999987665  4889999999999998654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.95  E-value=1.2e-09  Score=98.59  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++.+|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..|+.    ..++.+...|..+.....        
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~--------  132 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDA--------  132 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTT--------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC----CccEEEEEcchhhhhhhh--------
Confidence            5789999999999999888876  68999999999999999999998864    245888877744311000        


Q ss_pred             cccccccCcchhhc--cCCccEEEEeccccCcc---------------cHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKE--VQRASVLLAADVIYSDD---------------LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~--~~~fDlIlasDviY~~~---------------~~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ...  ..+||+|++...++...               ....++..+.++|+|+|...
T Consensus       133 -----------~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~  189 (254)
T 2h00_A          133 -----------LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE  189 (254)
T ss_dssp             -----------STTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred             -----------hhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence                       001  24799999876655432               01245566677777776543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.95  E-value=2.9e-09  Score=94.35  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+        
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~~~~--------  135 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLKPALETLD--------  135 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHH--------
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeEEEEEcCHHHHHH--------
Confidence            46789999999999999999986   57999999999999999999988763    2467777665432100        


Q ss_pred             CccccccccCcchhhc---cCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKE---VQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~---~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ....   .++||+|++.-.   ......+++.+.++|+++|.
T Consensus       136 ------------~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~  174 (229)
T 2avd_A          136 ------------ELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGI  174 (229)
T ss_dssp             ------------HHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEE
T ss_pred             ------------HHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeE
Confidence                        0001   158999998422   45567889999999999873

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.95  E-value=4.3e-09  Score=100.51  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=82.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+++|||+|||+|..++.+++.  +.+|++.|+ +.+++.+++++..++.    ..++.+...|+.+...+         
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~---------  244 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG----SERIHGHGANLLDRDVP---------  244 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGEEEEECCCCSSSCC---------
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc----ccceEEEEccccccCCC---------
Confidence            5679999999999999999885  569999999 8999999999876542    35789999988764200         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..+.||+|+++.++++..  ....+++.+.+.|+|+|..+
T Consensus       245 -------------~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~  284 (363)
T 3dp7_A          245 -------------FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVY  284 (363)
T ss_dssp             -------------CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred             -------------CCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence                         014799999999998654  44678999999999988544

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.95  E-value=4.3e-09  Score=99.90  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++..  .+++++|+ +.+++.+++|+..++.    ..++.+...|+.+..+         
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~---------  247 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEPLP---------  247 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSCCS---------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCCCC---------
Confidence            467899999999999999998874  58999999 8999999999988763    3478999988875311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~  247 (335)
                                      ..||+|+++.++++....  ..+++.+.++|+|+|..
T Consensus       248 ----------------~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l  284 (360)
T 1tw3_A          248 ----------------RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI  284 (360)
T ss_dssp             ----------------SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEE
T ss_pred             ----------------CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEE
Confidence                            259999999999876544  57999999999998754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.95  E-value=6.3e-10  Score=102.53  Aligned_cols=113  Identities=15%  Similarity=0.140  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCC-----------CC--------------
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFS-----------HQ--------------  172 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-----------~~--------------  172 (335)
                      .++.+|||||||+|..++.+++. +.+|+++|+++.+++.+++++..+.....           ..              
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            57889999999999966666553 67999999999999999887643210000           00              


Q ss_pred             CeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC----cccHHHHHHHHHHhccCCCcce
Q 019839          173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..+.+...|..+..+-..                 .....++||+|+++.++++    .+....+++.+.++|+|||..+
T Consensus       150 ~~~~~~~~D~~~~~~~~~-----------------~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~  212 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGA-----------------GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  212 (289)
T ss_dssp             HEEEEECCCTTSSSTTCS-----------------SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhceEEecccCCCCCccc-----------------cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            013444445444211000                 0001346999999999988    5678899999999999988544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.95  E-value=4.9e-09  Score=93.47  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||||||+|..++.+++. + .+|+++|+++.+++.++.|+..+       .++.+...|..+...        
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~--------  136 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANKPQE--------  136 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTCGGG--------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-------CCeEEEECCCCCccc--------
Confidence            346889999999999999999988 4 79999999999999999987654       346666666544200        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                            +      ......||+|+ .|+ ..+.....+++.+.++|+|+|.
T Consensus       137 ------~------~~~~~~~D~v~-~~~-~~~~~~~~~l~~~~~~LkpgG~  173 (230)
T 1fbn_A          137 ------Y------ANIVEKVDVIY-EDV-AQPNQAEILIKNAKWFLKKGGY  173 (230)
T ss_dssp             ------G------TTTSCCEEEEE-ECC-CSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ------c------cccCccEEEEE-Eec-CChhHHHHHHHHHHHhCCCCcE
Confidence                  0      00114799999 232 2334457889999999999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.95  E-value=4.9e-09  Score=94.98  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+|+.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+.       
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~-------  146 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGPALPVLDE-------  146 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHH-------
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHHHH-------
Confidence            46789999999999999999987   67999999999999999999988763    24677777664332100       


Q ss_pred             CccccccccCcchhh---ccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELK---EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~---~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...   ..++||+|++.-   .......+++.+.++|++||.
T Consensus       147 ------------l~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~  185 (247)
T 1sui_A          147 ------------MIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGV  185 (247)
T ss_dssp             ------------HHHSGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCC
T ss_pred             ------------HHhccCCCCCEEEEEEcC---chHHHHHHHHHHHHhCCCCeE
Confidence                        000   135899999742   245678899999999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.94  E-value=2.3e-09  Score=95.56  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+++|+..++.    ..++.+...|+.+..+.        
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~--------  120 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL----ESRIELLFGDALQLGEK--------  120 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCGGGSHHH--------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECCHHHHHHh--------
Confidence            36789999999999999999988  68999999999999999999988763    24577777665442100        


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ....++||+|++....   .....+++.+.++|+++|..
T Consensus       121 ------------~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~l  156 (233)
T 2gpy_A          121 ------------LELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLI  156 (233)
T ss_dssp             ------------HTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEE
T ss_pred             ------------cccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEE
Confidence                        0013589999986553   36678899999999998743

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.94  E-value=3.1e-09  Score=100.60  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CC-CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FN-GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~-g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+ +.+|||+|||+|..++.+++.  +.++++.|+ +.+++.+++++..+..    ..++.+...|+.+..+        
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------  243 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL----GGRVEFFEKNLLDARN--------  243 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGEEEEECCTTCGGG--------
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC----CCceEEEeCCcccCcc--------
Confidence            34 789999999999999999887  569999999 7899999999887653    3578999998876520        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ...+.||+|+++.++++..  ....+++.+.++|+|+|..+
T Consensus       244 --------------~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~  284 (352)
T 3mcz_A          244 --------------FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALL  284 (352)
T ss_dssp             --------------GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             --------------cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence                          0123699999999998755  45889999999999987544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.94  E-value=1.6e-09  Score=94.95  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|+.+..+        
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--------  122 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGDPLGIAA--------  122 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESCHHHHHT--------
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEecHHHHhc--------
Confidence            35689999999999999999987   57999999999999999999987653    2457777766543211        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                    ...+ ||+|++.   ........+++.+.++|+++|.
T Consensus       123 --------------~~~~-fD~v~~~---~~~~~~~~~l~~~~~~LkpgG~  155 (210)
T 3c3p_A          123 --------------GQRD-IDILFMD---CDVFNGADVLERMNRCLAKNAL  155 (210)
T ss_dssp             --------------TCCS-EEEEEEE---TTTSCHHHHHHHHGGGEEEEEE
T ss_pred             --------------cCCC-CCEEEEc---CChhhhHHHHHHHHHhcCCCeE
Confidence                          0124 9999975   3356678899999999999873

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.94  E-value=4.2e-09  Score=98.41  Aligned_cols=113  Identities=11%  Similarity=-0.069  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCC-CCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||||||+|.....+++. +.+|+++|+++.+++.++........... ..-.+.+...+...+.-          
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~----------  117 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF----------  117 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH----------
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchh----------
Confidence            4789999999999544444444 57999999999999999988765431000 00023343333321100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---cccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---~~~~~~L~~tl~~lL~~~~~~  247 (335)
                       ...+    ......++||+|++..++++   .+....+++.+.++|+|||..
T Consensus       118 -~~~l----~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~  165 (302)
T 2vdw_A          118 -VSSV----REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV  165 (302)
T ss_dssp             -HHHH----HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEE
T ss_pred             -hhhh----hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEE
Confidence             0000    00012358999999998853   356689999999999998853

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.93  E-value=8.6e-09  Score=99.69  Aligned_cols=105  Identities=13%  Similarity=-0.019  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||||||+|..++.+|+.| .+|+++|+++.+++.+++|+..|+..   ..++.+...|..+..+.         
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v~~~~~D~~~~~~~---------  286 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRT---------  286 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHH---------
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHH---------
Confidence            478899999999999999999985 69999999999999999999999730   02677777765432100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~  245 (335)
                                ......+||+|++.-..+.         ......++..+.++|+++|
T Consensus       287 ----------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  333 (396)
T 3c0k_A          287 ----------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGG  333 (396)
T ss_dssp             ----------HHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEE
T ss_pred             ----------HHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      0011358999998533322         1456778888999999876

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.92  E-value=1.8e-09  Score=98.45  Aligned_cols=102  Identities=6%  Similarity=-0.007  Sum_probs=80.3

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+|||||||+|.+++.++..  ..+|++.|+++.+++.++.|+..|+.      ...+...|.....+           
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~------~~~~~v~D~~~~~p-----------  195 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV------PHRTNVADLLEDRL-----------  195 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC------CEEEEECCTTTSCC-----------
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeeecccCC-----------
Confidence            569999999999999999887  46999999999999999999999873      36677777665533           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcceeeceEEEEEEeee
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKKVLVNMVLYLALEKR  261 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R  261 (335)
                                   .++||+||+..++.+-+..  ..++ .+-+.|++++        ++|++..|
T Consensus       196 -------------~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~--------vvVSfp~k  238 (281)
T 3lcv_B          196 -------------DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPN--------IVVTFPTK  238 (281)
T ss_dssp             -------------CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSE--------EEEEEECC
T ss_pred             -------------CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCC--------EEEeccch
Confidence                         3489999999999885433  3455 5566666654        78888884

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.92  E-value=3.6e-09  Score=100.67  Aligned_cols=113  Identities=14%  Similarity=0.067  Sum_probs=85.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      .|+..+....   ....+.+|||+|||+|...+.+|..+   .+|+++|+++.+++.++.|+..++.     .++.+...
T Consensus       190 ~la~~l~~~~---~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~~i~~~~~  261 (354)
T 3tma_A          190 VLAQALLRLA---DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----SWIRFLRA  261 (354)
T ss_dssp             HHHHHHHHHT---TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----TTCEEEEC
T ss_pred             HHHHHHHHHh---CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----CceEEEeC
Confidence            4666665542   34568899999999999999999976   7999999999999999999998873     36788877


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCCcce
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      |..+...                       ....||+|++.-. |..         .....+++.+.++|+++|..+
T Consensus       262 D~~~~~~-----------------------~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~  314 (354)
T 3tma_A          262 DARHLPR-----------------------FFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVA  314 (354)
T ss_dssp             CGGGGGG-----------------------TCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred             ChhhCcc-----------------------ccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEE
Confidence            7665311                       1236899997433 332         224788999999999988543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.92  E-value=7.4e-09  Score=91.64  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-------EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-------TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIF  190 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-------~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~  190 (335)
                      ..++.+|||+|||+|..++.+++...       +|+++|+++.+++.+++|+..++.......++.+...|..+..+.  
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  155 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE--  155 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH--
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc--
Confidence            35688999999999999999998754       999999999999999999987651000014577777765543100  


Q ss_pred             cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ......+||+|++...+.+      +++.+.++|+++|..+
T Consensus       156 -----------------~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv  190 (227)
T 2pbf_A          156 -----------------EKKELGLFDAIHVGASASE------LPEILVDLLAENGKLI  190 (227)
T ss_dssp             -----------------HHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEE
T ss_pred             -----------------cCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEE
Confidence                             0012358999999887764      3578889999988543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.92  E-value=3.4e-09  Score=97.91  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCccCHHHHHH-----HHh-CCEE--EEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILL-----SRV-AWTV--FLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIF  190 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~l-----a~~-~~~V--~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~  190 (335)
                      .++.+|||+|||+|..++.+     ++. +..|  +++|.+++|++.+++++.....    ..++.+.   |....... 
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~----~~~v~~~---~~~~~~~~-  122 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN----LENVKFA---WHKETSSE-  122 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS----CTTEEEE---EECSCHHH-
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC----CCcceEE---EEecchhh-
Confidence            35679999999999665432     221 3444  9999999999999988864321    1233332   22210000 


Q ss_pred             cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                             .  ...|..  ....++||+|+++.++|+.+....+++.+.++|+|||..+
T Consensus       123 -------~--~~~~~~--~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  169 (292)
T 2aot_A          123 -------Y--QSRMLE--KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML  169 (292)
T ss_dssp             -------H--HHHHHT--TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEE
T ss_pred             -------h--hhhhcc--ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEE
Confidence                   0  000000  0023589999999999999999999999999999988543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.90  E-value=6.5e-09  Score=94.98  Aligned_cols=101  Identities=17%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHc-cCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N-~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..+ +..   ..++.+...|..+...     
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~---~~~v~~~~~d~~~~~~-----  167 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP---PDNWRLVVSDLADSEL-----  167 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC---CTTEEEECSCGGGCCC-----
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC---CCcEEEEECchHhcCC-----
Confidence            4467889999999999999999986   579999999999999999999877 311   2457777766554310     


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                        ..+.||+|++     +......+++.+.++|+++|..+
T Consensus       168 ------------------~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~  200 (280)
T 1i9g_A          168 ------------------PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLM  200 (280)
T ss_dssp             ------------------CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             ------------------CCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEE
Confidence                              1247999998     23345578999999999987543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.90  E-value=8.8e-09  Score=92.93  Aligned_cols=103  Identities=9%  Similarity=-0.000  Sum_probs=78.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ....+|||||||+|.+++.++ -+.+|+++|+++.+++.++.|+..|+      .+..+...|.....+           
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~~~-----------  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCAPP-----------  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTSCC-----------
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccCCC-----------
Confidence            357799999999999999988 66799999999999999999999986      466777777665533           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcceeeceEEEEEEeee
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLVNMVLYLALEKR  261 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R  261 (335)
                                   .+++|+|++..++++-+  ....+++.+. .|++++        ++|++..|
T Consensus       166 -------------~~~~DvvLllk~lh~LE~q~~~~~~~ll~-aL~~~~--------vvVsfPtk  208 (253)
T 3frh_A          166 -------------AEAGDLALIFKLLPLLEREQAGSAMALLQ-SLNTPR--------MAVSFPTR  208 (253)
T ss_dssp             -------------CCBCSEEEEESCHHHHHHHSTTHHHHHHH-HCBCSE--------EEEEEECC
T ss_pred             -------------CCCcchHHHHHHHHHhhhhchhhHHHHHH-HhcCCC--------EEEEcChH
Confidence                         24899999998888743  2334454444 555433        67777755

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.90  E-value=2.6e-09  Score=96.54  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||||||+|..++.+|+.   +.+|+++|+++.+++.+++|++.++.    ..++.+...|..+..+.       
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~-------  127 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKIKLRLGPALDTLHS-------  127 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTEEEEESCHHHHHHH-------
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHH-------
Confidence            46789999999999999999985   57999999999999999999998764    34688877664332100       


Q ss_pred             CccccccccCcchhh--ccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELK--EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~--~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...  ..++||+|++.-   .......+++.+.++|++||.
T Consensus       128 ------------~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~  165 (242)
T 3r3h_A          128 ------------LLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGL  165 (242)
T ss_dssp             ------------HHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEE
T ss_pred             ------------HhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeE
Confidence                        000  036899998743   255677789999999999873

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.89  E-value=3.6e-09  Score=95.16  Aligned_cols=62  Identities=21%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHH
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKN  161 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~N  161 (335)
                      .+.+++..|...|...   ....+|++|||||||+|..+..+++.| .+|+++|+++.|++.+++|
T Consensus        17 yvsrg~~kL~~~L~~~---~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           17 YVSRGGLKLEKALKEF---HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             SSSTTHHHHHHHHHHT---TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHT
T ss_pred             ccCCcHHHHHHHHHHc---CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHh
Confidence            3456777777777654   245678999999999999999999987 4999999999999876654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.88  E-value=1.3e-08  Score=97.66  Aligned_cols=102  Identities=11%  Similarity=0.063  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..+|++|||+| |+|..++.+++.+  .+|++.|+++.+++.+++|+..|+.     .++.+...|+.+..+..      
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~l~~~------  237 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----EDIEIFTFDLRKPLPDY------  237 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----CCEEEECCCTTSCCCTT------
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCEEEEEChhhhhchhh------
Confidence            45789999999 9999999999885  5999999999999999999998873     36888888877632210      


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ..++||+|++.-+ |.......+++.+.++|+++|..
T Consensus       238 ---------------~~~~fD~Vi~~~p-~~~~~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          238 ---------------ALHKFDTFITDPP-ETLEAIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             ---------------TSSCBSEEEECCC-SSHHHHHHHHHHHHHTBCSTTCE
T ss_pred             ---------------ccCCccEEEECCC-CchHHHHHHHHHHHHHcccCCeE
Confidence                           1247999998543 44333578899999999998854

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.88  E-value=7.9e-09  Score=92.86  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+|+.   +.+|+++|+++.+++.+++|+..++.    ..++.+...|..+..+.       
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~-------  137 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKINFIESDAMLALDN-------  137 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHH-------
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHH-------
Confidence            46789999999999999999987   67999999999999999999988763    24677777665432100       


Q ss_pred             CccccccccCcchhh---ccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELK---EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~---~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  ...   ..++||+|+..   ........+++.+.++|++||
T Consensus       138 ------------l~~~~~~~~~fD~I~~d---~~~~~~~~~l~~~~~~L~pGG  175 (237)
T 3c3y_A          138 ------------LLQGQESEGSYDFGFVD---ADKPNYIKYHERLMKLVKVGG  175 (237)
T ss_dssp             ------------HHHSTTCTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEE
T ss_pred             ------------HHhccCCCCCcCEEEEC---CchHHHHHHHHHHHHhcCCCe
Confidence                        000   13589999963   234567889999999999987

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.88  E-value=1.8e-08  Score=89.27  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..++.+|||+|||+|..++.+++. +  .+|+++|.++.+++.++.|+..+       .++.+...|..+....      
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~------  137 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEY------  137 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGG------
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchh------
Confidence            347889999999999999999976 3  79999999999999999998764       2567777665542100      


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ....++||+|++. .. .......++..+.++|+++|..
T Consensus       138 --------------~~~~~~~D~v~~~-~~-~~~~~~~~l~~~~~~LkpgG~l  174 (227)
T 1g8a_A          138 --------------RALVPKVDVIFED-VA-QPTQAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             --------------TTTCCCEEEEEEC-CC-STTHHHHHHHHHHHHEEEEEEE
T ss_pred             --------------hcccCCceEEEEC-CC-CHhHHHHHHHHHHHhcCCCCEE
Confidence                          0012479999964 33 3444456699999999998743

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.88  E-value=1.2e-08  Score=98.31  Aligned_cols=102  Identities=19%  Similarity=0.154  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++++|||+|||+|..++.+|+.+.+|+++|+++.+++.++.|+..|+.     .++.+...|..+..+            
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~-----~~~~~~~~d~~~~~~------------  271 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLR------------  271 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHH------------
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEECCHHHHHH------------
Confidence            788999999999999999999888999999999999999999999974     347777666433210            


Q ss_pred             cccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~  245 (335)
                             .......+||+|++.-..|..         .....++..+.++|+++|
T Consensus       272 -------~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  319 (382)
T 1wxx_A          272 -------RLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGG  319 (382)
T ss_dssp             -------HHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred             -------HHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                   000113589999973222221         345678888999999977

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.87  E-value=1.4e-08  Score=99.27  Aligned_cols=107  Identities=13%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHH-------HHHHHHccCCCCCCCeeEEEec-cCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNC-------AKNVQLNSGVFSHQGSVHVRDL-NWMNPW  186 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~-------~~Nv~~N~~~~~~~~~v~v~~l-dW~~~~  186 (335)
                      ....|.+|||||||+|..++.+|+. + .+|++.|+++.+++.+       +.|+..++..   ..++.+... ++...+
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~---~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---LNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---CCCEEEEESSCSTTCH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC---CCceEEEEcCcccccc
Confidence            3457899999999999999999986 4 5899999999988888       8888776521   145666654 232210


Q ss_pred             CCCccCCCCCccccccccCcchh-hccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          187 PPIFSLGNSSASQERYSWNSSEL-KEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       187 ~~~~~~~~~~~~~~~~~w~~~~~-~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      +                     . .....||+|+++.+++. +.....++.+.+.|++||..+
T Consensus       316 ~---------------------~~~~~~~FDvIvvn~~l~~-~d~~~~L~el~r~LKpGG~lV  356 (433)
T 1u2z_A          316 R---------------------VAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVGCKII  356 (433)
T ss_dssp             H---------------------HHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTTCEEE
T ss_pred             c---------------------cccccCCCCEEEEeCcccc-ccHHHHHHHHHHhCCCCeEEE
Confidence            0                     0 11358999999888765 455566789999999988544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.86  E-value=7.9e-09  Score=86.50  Aligned_cols=115  Identities=10%  Similarity=0.015  Sum_probs=77.9

Q ss_pred             ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      ++++..+.+.+...   ....++.+|||+|||+|..++.+++.   +.+|+++|.++ +++.               .++
T Consensus         4 ~r~~~~l~~~~~~~---~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~   64 (180)
T 1ej0_A            4 SRAWFKLDEIQQSD---KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGV   64 (180)
T ss_dssp             CHHHHHHHHHHHHH---CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTE
T ss_pred             hhHHHHHHHHHHHh---CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcE
Confidence            34556666666554   13457889999999999999999887   37999999997 5421               346


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccH-----------HHHHHHHHHhccCC
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT-----------DALFHTLKRLMPLG  244 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~-----------~~L~~tl~~lL~~~  244 (335)
                      .+...|+.+.....           ..    ......++||+|++..+++.....           ..+++.+.++|+++
T Consensus        65 ~~~~~d~~~~~~~~-----------~~----~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g  129 (180)
T 1ej0_A           65 DFLQGDFRDELVMK-----------AL----LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             EEEESCTTSHHHHH-----------HH----HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             EEEEcccccchhhh-----------hh----hccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence            66666665431000           00    000123589999998887765544           68899999999998


Q ss_pred             Ccc
Q 019839          245 SKK  247 (335)
Q Consensus       245 ~~~  247 (335)
                      |..
T Consensus       130 G~l  132 (180)
T 1ej0_A          130 GSF  132 (180)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.85  E-value=2.5e-08  Score=96.40  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ++++|||+|||+|..++.+|+.| .+|+++|+++.+++.+++|+..|+.    ..++.+...|..+..+.          
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~----------  282 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEK----------  282 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHH----------
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHH----------
Confidence            78899999999999999999985 5999999999999999999999974    12677777765432100          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~~  246 (335)
                               ......+||+|++.-..|..         .....++..+.++|+++|.
T Consensus       283 ---------~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  330 (396)
T 2as0_A          283 ---------LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGI  330 (396)
T ss_dssp             ---------HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ---------HHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence                     00113589999984333321         3466788888899998763

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.84  E-value=7.5e-09  Score=100.33  Aligned_cols=113  Identities=11%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ...+++.+....   ..-++.+|||+|||+|.....+++.+.+|+++|.++.+++.++++   +.      .   .....
T Consensus        92 ~~~~~~~l~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~---~~------~---~~~~~  156 (416)
T 4e2x_A           92 FAMLARDFLATE---LTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK---GI------R---VRTDF  156 (416)
T ss_dssp             HHHHHHHHHHTT---TCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT---TC------C---EECSC
T ss_pred             HHHHHHHHHHHh---CCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc---CC------C---cceee
Confidence            344556666553   334688999999999999999999999999999999999888765   11      1   11111


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      +.....            .      ......++||+|++..++++.+....+++.+.++|+|+|..
T Consensus       157 ~~~~~~------------~------~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l  204 (416)
T 4e2x_A          157 FEKATA------------D------DVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVF  204 (416)
T ss_dssp             CSHHHH------------H------HHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEE
T ss_pred             echhhH------------h------hcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEE
Confidence            110000            0      00012468999999999999999999999999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.84  E-value=1.7e-08  Score=94.81  Aligned_cols=102  Identities=14%  Similarity=0.041  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+|.+|||+|||+|..++.+|..   +.+|++.|+++.+++.+++|++.++.     .++.+...|..+..        
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~~--------  182 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIG--------  182 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGG--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeEEEEECChhhcc--------
Confidence            357889999999999999998876   36899999999999999999998873     45777666544320        


Q ss_pred             CCccccccccCcchhhccCCccEEEEe------ccccCcc----------------cHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAA------DVIYSDD----------------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlas------DviY~~~----------------~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ...+.||+|++.      .++...+                ....+++.+.++|++||..
T Consensus       183 ---------------~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~l  242 (315)
T 1ixk_A          183 ---------------ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGIL  242 (315)
T ss_dssp             ---------------GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ---------------cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence                           013479999973      1222111                1257889999999998743

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.83  E-value=4.8e-09  Score=92.54  Aligned_cols=88  Identities=17%  Similarity=0.086  Sum_probs=70.6

Q ss_pred             CCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcccc
Q 019839          121 GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE  200 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~  200 (335)
                      +.+|||+|||+|..+..+++.    +++|+++.+++.++.+   |         +.+...+..+..              
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~---~---------~~~~~~d~~~~~--------------   97 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR---G---------VFVLKGTAENLP--------------   97 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT---T---------CEEEECBTTBCC--------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc---C---------CEEEEcccccCC--------------
Confidence            889999999999988887754    9999999999998876   1         344555543321              


Q ss_pred             ccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       201 ~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                               ...+.||+|++.+++++.+....+++.+.++|+++|..
T Consensus        98 ---------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  135 (219)
T 1vlm_A           98 ---------LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL  135 (219)
T ss_dssp             ---------SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred             ---------CCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEE
Confidence                     01347999999999999888999999999999998743

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.83  E-value=7.9e-09  Score=97.89  Aligned_cols=93  Identities=12%  Similarity=0.076  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .+|.+|||+|||+|..++. |+.+.+|++.|.++.+++.+++|++.|+.    ..++.+...|..+..            
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~------------  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVD------------  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCC------------
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhc------------
Confidence            3788999999999999999 88778999999999999999999999974    246777777755431            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                    .+||+|++ |.-+.   ...++..+.++|+++|.
T Consensus       257 --------------~~fD~Vi~-dpP~~---~~~~l~~~~~~L~~gG~  286 (336)
T 2yx1_A          257 --------------VKGNRVIM-NLPKF---AHKFIDKALDIVEEGGV  286 (336)
T ss_dssp             --------------CCEEEEEE-CCTTT---GGGGHHHHHHHEEEEEE
T ss_pred             --------------CCCcEEEE-CCcHh---HHHHHHHHHHHcCCCCE
Confidence                          47999998 43332   33678888999998763

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.83  E-value=2.1e-08  Score=90.25  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCC---CCCeeEEEeccCCCCCCCCccCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFS---HQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~---~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      -++.+|||+|||+|..++.+|+.+  .+|+++|+++.+++.++.|+..|.....   ...++.+...|..+..+..    
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~----  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF----  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT----
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh----
Confidence            467899999999999999999885  5899999999999999999988721100   0246788887766532110    


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCccc-----------HHHHHHHHHHhccCCCc
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL-----------TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~-----------~~~L~~tl~~lL~~~~~  246 (335)
                                      -....+|.|+..   +.+..           ...+++.+.++|++||.
T Consensus       124 ----------------~~~~~~d~v~~~---~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~  168 (246)
T 2vdv_E          124 ----------------FEKGQLSKMFFC---FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV  168 (246)
T ss_dssp             ----------------SCTTCEEEEEEE---SCCCC------CSSCCCHHHHHHHHHHEEEEEE
T ss_pred             ----------------ccccccCEEEEE---CCCcccccchhHHhhccHHHHHHHHHHcCCCCE
Confidence                            123478888743   22222           15799999999999874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.83  E-value=1.4e-08  Score=95.78  Aligned_cols=105  Identities=14%  Similarity=0.020  Sum_probs=75.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHH-------ccCCCCCCCeeEEEeccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQL-------NSGVFSHQGSVHVRDLNWMNPW  186 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~-------N~~~~~~~~~v~v~~ldW~~~~  186 (335)
                      ...+|.+|||+|||+|..++.+++. |  .+|+++|+++.+++.+++|+..       |.... ...++.+...|..+..
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~-~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE-WPDNVDFIHKDISGAT  180 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC-CCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccc-cCCceEEEECChHHcc
Confidence            3467899999999999999999987 4  7999999999999999999974       33210 0246888888776542


Q ss_pred             CCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          187 PPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       187 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ...                     ..+.||+|++.-     .....++..+.++|+++|..+
T Consensus       181 ~~~---------------------~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv  216 (336)
T 2b25_A          181 EDI---------------------KSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCA  216 (336)
T ss_dssp             ----------------------------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEE
T ss_pred             ccc---------------------CCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEE
Confidence            110                     124799999832     233347889999999987543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.82  E-value=1.1e-08  Score=91.57  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .++++|||+|||+|..++.+++.   +.+|+++|.++.+++.+++|+..++.    ..++.+...+..+..+        
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~~l~--------  138 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKISLRLGPALATLE--------  138 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHHH--------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHH--------
Confidence            36789999999999999999986   46999999999999999999988763    2457777665432100        


Q ss_pred             CccccccccCcchhh-cc--CCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELK-EV--QRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~-~~--~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ... ..  ++||+|++.-.   ......+++.+.++|+++|.
T Consensus       139 ------------~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~  177 (232)
T 3cbg_A          139 ------------QLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGL  177 (232)
T ss_dssp             ------------HHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEE
T ss_pred             ------------HHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeE
Confidence                        000 11  58999996422   45677889999999999873

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.82  E-value=2.2e-08  Score=88.83  Aligned_cols=101  Identities=11%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-C-------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-A-------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPI  189 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~-------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~  189 (335)
                      ..++.+|||+|||+|..++.+++. +       .+|+++|+++.+++.+++|+..+........++.+...|..+..   
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---  158 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY---  158 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC---
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC---
Confidence            346789999999999999998885 4       49999999999999999998765300000135777777655431   


Q ss_pred             ccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          190 FSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       190 ~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                          ...++||+|++...+.+.      .+.+.++|+++|..
T Consensus       159 --------------------~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~l  190 (227)
T 1r18_A          159 --------------------PPNAPYNAIHVGAAAPDT------PTELINQLASGGRL  190 (227)
T ss_dssp             --------------------GGGCSEEEEEECSCBSSC------CHHHHHTEEEEEEE
T ss_pred             --------------------CcCCCccEEEECCchHHH------HHHHHHHhcCCCEE
Confidence                                123589999998887653      37788999998743

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.81  E-value=2.8e-08  Score=96.25  Aligned_cols=106  Identities=8%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-CC-EEEEecCchHHHHHHHHHHH-------HccCCCCCCCeeEEEeccCCCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-AW-TVFLTDHGNYILDNCAKNVQ-------LNSGVFSHQGSVHVRDLNWMNPWPP  188 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~Nv~-------~N~~~~~~~~~v~v~~ldW~~~~~~  188 (335)
                      .-+|.+|||||||+|.+.+.+|+. +. +|++.|+++.+++.++.|++       .++..   ..++.+...|..+..- 
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~---~~rVefi~GD~~~lp~-  246 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK---HAEYTLERGDFLSEEW-  246 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC---CCEEEEEECCTTSHHH-
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC---CCCeEEEECcccCCcc-
Confidence            457889999999999999998865 54 69999999999999988764       23311   2578888888765310 


Q ss_pred             CccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          189 IFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       189 ~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                          ......||+|++..+++.++.. ..+..+.+.|+|||..+
T Consensus       247 --------------------~d~~~~aDVVf~Nn~~F~pdl~-~aL~Ei~RvLKPGGrIV  285 (438)
T 3uwp_A          247 --------------------RERIANTSVIFVNNFAFGPEVD-HQLKERFANMKEGGRIV  285 (438)
T ss_dssp             --------------------HHHHHTCSEEEECCTTCCHHHH-HHHHHHHTTSCTTCEEE
T ss_pred             --------------------ccccCCccEEEEcccccCchHH-HHHHHHHHcCCCCcEEE
Confidence                                0012379999988776654444 44567789999988544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.81  E-value=5.1e-08  Score=86.11  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..++.+|||+|||+|..++.+++. +  .+|+++|+++.+++.+++|+..++.......++.+...|.....        
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY--------  146 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC--------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc--------
Confidence            357889999999999999999887 4  69999999999999999999876420000135777777755331        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                     ....+||+|++..++.+      +++.+.++|+++|..
T Consensus       147 ---------------~~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~l  178 (226)
T 1i1n_A          147 ---------------AEEAPYDAIHVGAAAPV------VPQALIDQLKPGGRL  178 (226)
T ss_dssp             ---------------GGGCCEEEEEECSBBSS------CCHHHHHTEEEEEEE
T ss_pred             ---------------ccCCCcCEEEECCchHH------HHHHHHHhcCCCcEE
Confidence                           12347999998877643      346788999998743

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.80  E-value=6.4e-09  Score=91.47  Aligned_cols=103  Identities=10%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++.+|||+|||+|..++.+++.  +.+|+++|+++.+++.+.+++..+..... ..++.+...|..+....        
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~~~v~~~~~d~~~l~~~--------   96 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-LPNLLYLWATAERLPPL--------   96 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-CTTEEEEECCSTTCCSC--------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-CCceEEEecchhhCCCC--------
Confidence            46789999999999999999998  68999999999999876655543321111 34688888877663111        


Q ss_pred             ccccccccCcchhhccCCccEEE---Eecccc--CcccHHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRASVLL---AADVIY--SDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIl---asDviY--~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                     ... |.|.   .....+  +......+++.+.++|+|+|.
T Consensus        97 ---------------~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  135 (218)
T 3mq2_A           97 ---------------SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGAS  135 (218)
T ss_dssp             ---------------CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEE
T ss_pred             ---------------CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcE
Confidence                           112 5544   211111  223347889999999999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.80  E-value=1.2e-08  Score=93.65  Aligned_cols=105  Identities=10%  Similarity=-0.039  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+|.+|||+|||+|..++.++..  + .+|++.|+++.+++.++.|++.++.     .++.+...|..+...        
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~--------  148 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-----LNTIIINADMRKYKD--------  148 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCHHHHHH--------
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-----CcEEEEeCChHhcch--------
Confidence            57889999999999999988874  4 7999999999999999999998863     467777665432200        


Q ss_pred             CccccccccCcchhhccCCccEEEEec------ccc------------CcccHHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAAD------VIY------------SDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasD------viY------------~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ......++||+|++.-      ++.            .......+++.+.++|++||..
T Consensus       149 -----------~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  207 (274)
T 3ajd_A          149 -----------YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGEL  207 (274)
T ss_dssp             -----------HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence                       0000135799999741      111            1145578899999999998743

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.79  E-value=3.8e-08  Score=91.07  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.+....   ...++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++.|+..++.    ..++.+...|..+
T Consensus        16 i~~~i~~~~---~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~D~~~   88 (285)
T 1zq9_A           16 IINSIIDKA---ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV----ASKLQVLVGDVLK   88 (285)
T ss_dssp             HHHHHHHHT---CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEESCTTT
T ss_pred             HHHHHHHhc---CCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcceec
Confidence            445555543   345788999999999999999999999999999999999999999876542    2468888887765


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        89 ~   89 (285)
T 1zq9_A           89 T   89 (285)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.78  E-value=6.1e-08  Score=87.24  Aligned_cols=125  Identities=17%  Similarity=0.131  Sum_probs=80.4

Q ss_pred             cceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839           95 GLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFS  170 (335)
Q Consensus        95 G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~  170 (335)
                      ..+.|..- ..++..|+..+..-..-+|.+|||||||+|..+..+|.. +  .+|++.|+++.+++.+...+...     
T Consensus        50 ~yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----  124 (232)
T 3id6_C           50 EYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----  124 (232)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----
T ss_pred             chhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----
Confidence            35666442 234555555431113457899999999999999888876 3  49999999999886665544432     


Q ss_pred             CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                        .++.+...|-......                    ....++||+|++. +.. +.....+...+.++|++||..+
T Consensus       125 --~nv~~i~~Da~~~~~~--------------------~~~~~~~D~I~~d-~a~-~~~~~il~~~~~~~LkpGG~lv  178 (232)
T 3id6_C          125 --PNIFPLLADARFPQSY--------------------KSVVENVDVLYVD-IAQ-PDQTDIAIYNAKFFLKVNGDML  178 (232)
T ss_dssp             --TTEEEEECCTTCGGGT--------------------TTTCCCEEEEEEC-CCC-TTHHHHHHHHHHHHEEEEEEEE
T ss_pred             --CCeEEEEcccccchhh--------------------hccccceEEEEec-CCC-hhHHHHHHHHHHHhCCCCeEEE
Confidence              3466666554332100                    0113489999874 332 5556667778888999988543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.77  E-value=3.5e-08  Score=91.94  Aligned_cols=72  Identities=19%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.+....   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.++.|+..++     ..++.+...|..+
T Consensus        30 i~~~i~~~~---~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~~~~~D~~~  101 (299)
T 2h1r_A           30 ILDKIIYAA---KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEG-----YNNLEVYEGDAIK  101 (299)
T ss_dssp             HHHHHHHHH---CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEC----CCS
T ss_pred             HHHHHHHhc---CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECchhh
Confidence            344444443   34578899999999999999999999999999999999999999998765     2457766666554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.77  E-value=5.7e-08  Score=84.26  Aligned_cols=88  Identities=11%  Similarity=0.047  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+++.+++.++.|+.          ++.+...|..+.           
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~~-----------  107 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEI-----------  107 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGC-----------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHHC-----------
Confidence            35788999999999999999998864 79999999999999998864          245555554332           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLM  241 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL  241 (335)
                                     .++||+|++...+++...  ...+++.+.+++
T Consensus       108 ---------------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          108 ---------------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             ---------------CCCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred             ---------------CCCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence                           137999999877766532  234566666665

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.77  E-value=4.7e-08  Score=87.92  Aligned_cols=105  Identities=11%  Similarity=0.091  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCC-CCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGV-FSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~-~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      -++.+|||||||+|..++.+|+.  +..|+++|+++.+++.++.|+...... .....++.+...|..+..+.       
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~-------  117 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPN-------  117 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHH-------
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhh-------
Confidence            35678999999999999999987  468999999999999999988641100 00035688888776542110       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCccc-----------HHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL-----------TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~-----------~~~L~~tl~~lL~~~~~  246 (335)
                                   .-..+.||.|+..   |.++.           ...+++.+.++|++||.
T Consensus       118 -------------~~~~~~~D~v~~~---~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~  163 (235)
T 3ckk_A          118 -------------FFYKGQLTKMFFL---FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL  163 (235)
T ss_dssp             -------------HCCTTCEEEEEEE---SCC-----------CCCHHHHHHHHHHEEEEEE
T ss_pred             -------------hCCCcCeeEEEEe---CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCE
Confidence                         0023579998753   22221           25799999999999874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.77  E-value=2.4e-08  Score=90.67  Aligned_cols=102  Identities=14%  Similarity=0.081  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      ...+++++....    ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++.          .++.+..
T Consensus        71 ~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~  136 (269)
T 1p91_A           71 RDAIVAQLRERL----DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCV  136 (269)
T ss_dssp             HHHHHHHHHHHS----CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEE
T ss_pred             HHHHHHHHHHhc----CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------CCcEEEE
Confidence            334555555432    136789999999999999999887  789999999999999888763          2345666


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                      .|+.+..                       ...++||+|++.++.       .+++.+.++|+|+|..
T Consensus       137 ~d~~~~~-----------------------~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l  174 (269)
T 1p91_A          137 ASSHRLP-----------------------FSDTSMDAIIRIYAP-------CKAEELARVVKPGGWV  174 (269)
T ss_dssp             CCTTSCS-----------------------BCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEE
T ss_pred             cchhhCC-----------------------CCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEE
Confidence            6654421                       012489999987652       2578899999998754

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.77  E-value=9e-09  Score=94.95  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCccCH----HHHHHHHh-C-----CEEEEecCchHHHHHHHHHHHHcc-----------------CCCCC-
Q 019839          120 NGIISLELGAGTGL----AGILLSRV-A-----WTVFLTDHGNYILDNCAKNVQLNS-----------------GVFSH-  171 (335)
Q Consensus       120 ~g~~VLELG~GtGL----~gl~la~~-~-----~~V~~TD~~~~~l~~~~~Nv~~N~-----------------~~~~~-  171 (335)
                      ++.+||++|||||-    +++.++.. +     .+|++||+++.+|+.+++|+-...                 ..... 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999997    56666665 3     489999999999999998851100                 00000 


Q ss_pred             --------CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhc
Q 019839          172 --------QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLM  241 (335)
Q Consensus       172 --------~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL  241 (335)
                              ..++.+...|+.+..-                      ...++||+|+|.+|+.+-  +....+++.+.+.|
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~----------------------~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L  242 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQY----------------------NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLL  242 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC----------------------CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGE
T ss_pred             ceeechhhcccCeEEecccCCCCC----------------------CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHh
Confidence                    1257788888776310                      012479999999997543  44588999999999


Q ss_pred             cCCCc
Q 019839          242 PLGSK  246 (335)
Q Consensus       242 ~~~~~  246 (335)
                      +|||.
T Consensus       243 ~pgG~  247 (274)
T 1af7_A          243 KPDGL  247 (274)
T ss_dssp             EEEEE
T ss_pred             CCCcE
Confidence            99873

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.76  E-value=3.9e-09  Score=98.11  Aligned_cols=116  Identities=17%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      .+-++++-|...|...   .....|++|||+|||||..+..+++.| ++|++.|+++.||+...++   +       .++
T Consensus        65 yvsrg~~Kl~~~l~~~---~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~-------~rv  131 (291)
T 3hp7_A           65 YVSRGGLKLEKALAVF---NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D-------DRV  131 (291)
T ss_dssp             SSSTTHHHHHHHHHHT---TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C-------TTE
T ss_pred             cccchHHHHHHHHHhc---CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C-------ccc
Confidence            5567888888887665   245689999999999999999998886 5999999999998764322   1       122


Q ss_pred             EEEe-ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          176 HVRD-LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       176 ~v~~-ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .... .+.....                   ...+ ....||+|++ |+.+.  ....++..+.++|+|+|..+
T Consensus       132 ~~~~~~ni~~l~-------------------~~~l-~~~~fD~v~~-d~sf~--sl~~vL~e~~rvLkpGG~lv  182 (291)
T 3hp7_A          132 RSMEQYNFRYAE-------------------PVDF-TEGLPSFASI-DVSFI--SLNLILPALAKILVDGGQVV  182 (291)
T ss_dssp             EEECSCCGGGCC-------------------GGGC-TTCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTCEEE
T ss_pred             ceecccCceecc-------------------hhhC-CCCCCCEEEE-EeeHh--hHHHHHHHHHHHcCcCCEEE
Confidence            2111 1110000                   0000 1124999986 55554  34778999999999998654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.76  E-value=4.9e-08  Score=89.78  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=77.9

Q ss_pred             CCeEEEEcCcc---CHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          121 GIISLELGAGT---GLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       121 g~~VLELG~Gt---GL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..+|||||||+   |.....+++.  +.+|++.|+++.|++.+++++..       ..++.+...|..+....       
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~-------  143 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYI-------  143 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHH-------
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhh-------
Confidence            47999999999   9877666665  57999999999999999998743       24678888876653100       


Q ss_pred             CccccccccCcc---hhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcc
Q 019839          196 SASQERYSWNSS---ELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       196 ~~~~~~~~w~~~---~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~  247 (335)
                              +...   ..-...+||+|++..++++.+.  ...+++.+.++|++||..
T Consensus       144 --------~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l  192 (274)
T 2qe6_A          144 --------LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYL  192 (274)
T ss_dssp             --------HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEE
T ss_pred             --------hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEE
Confidence                    0000   0001247999999999998654  889999999999998854

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.75  E-value=3.7e-08  Score=94.59  Aligned_cols=106  Identities=14%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~--~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      .++..|....    ..++.+|||+|||+|..++.+|..+.  +|+++|+++.+++.++.|+..++.    ..++.+...|
T Consensus       205 ~la~~l~~~~----~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i~~~~~D  276 (373)
T 3tm4_A          205 SIANAMIELA----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV----LDKIKFIQGD  276 (373)
T ss_dssp             HHHHHHHHHH----TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC----GGGCEEEECC
T ss_pred             HHHHHHHHhh----cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECC
Confidence            4555554431    34678999999999999999999986  999999999999999999998874    2567888777


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhc
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLM  241 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL  241 (335)
                      ..+..                       ...+.||+|++.-. |..         .....+++.+++++
T Consensus       277 ~~~~~-----------------------~~~~~fD~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          277 ATQLS-----------------------QYVDSVDFAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             GGGGG-----------------------GTCSCEEEEEEECC-CC------CCHHHHHHHHHHHHHHHE
T ss_pred             hhhCC-----------------------cccCCcCEEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc
Confidence            65531                       11258999998544 332         12466788888888

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.72  E-value=3.1e-08  Score=95.46  Aligned_cols=106  Identities=18%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCC----------CCCeeEEEeccCCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFS----------HQGSVHVRDLNWMNPWP  187 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~----------~~~~v~v~~ldW~~~~~  187 (335)
                      ++.+|||+|||+|..|+.+|+. + .+|++.|+++.+++.+++|++.|.....          ...++.+...|..+.. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~-  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH-
Confidence            6889999999999999999987 3 6899999999999999999999921000          0123666555533210 


Q ss_pred             CCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          188 PIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       188 ~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                           ......||+|+ .|..+.   ...+++...++++++|  +     +|+.+
T Consensus       126 ---------------------~~~~~~fD~I~-lDP~~~---~~~~l~~a~~~lk~gG--~-----l~vt~  164 (378)
T 2dul_A          126 ---------------------AERHRYFHFID-LDPFGS---PMEFLDTALRSAKRRG--I-----LGVTA  164 (378)
T ss_dssp             ---------------------HHSTTCEEEEE-ECCSSC---CHHHHHHHHHHEEEEE--E-----EEEEE
T ss_pred             ---------------------HhccCCCCEEE-eCCCCC---HHHHHHHHHHhcCCCC--E-----EEEEe
Confidence                                 00124799999 576433   3577888888898876  4     66766

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.70  E-value=1.5e-08  Score=90.57  Aligned_cols=100  Identities=11%  Similarity=0.026  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCc-hHHHHHH---HHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHG-NYILDNC---AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~-~~~l~~~---~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      .++.+|||||||+|..++.+|+.  +.+|+++|++ +.|++.+   ++|+..++     ..++.+...|..+. +.    
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-----~~~v~~~~~d~~~l-~~----   92 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-----LSNVVFVIAAAESL-PF----   92 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-----CSSEEEECCBTTBC-CG----
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEcCHHHh-hh----
Confidence            36789999999999999999854  6789999999 6777766   66665554     34677777765543 10    


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHhccCCCcce
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~lL~~~~~~~  248 (335)
                                          ..+|+|.+.-+.|...        ....+++.+.++|+|||..+
T Consensus        93 --------------------~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~  136 (225)
T 3p2e_A           93 --------------------ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE  136 (225)
T ss_dssp             --------------------GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEE
T ss_pred             --------------------hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEE
Confidence                                1234444433333211        22467899999999988644

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.69  E-value=9.9e-08  Score=93.85  Aligned_cols=104  Identities=14%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ..+|.+|||+|||+|..++.++..  + .+|+++|+++.+++.++.|+..++.     .++.+...|..+....      
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~------  325 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-----KIVKPLVKDARKAPEI------  325 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCTTCCSSS------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEEEcChhhcchh------
Confidence            357889999999999999998876  3 6999999999999999999998863     4677777776543110      


Q ss_pred             CCccccccccCcchhhccCCccEEEE------eccccCcccH----------------HHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLA------ADVIYSDDLT----------------DALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIla------sDviY~~~~~----------------~~L~~tl~~lL~~~~~~  247 (335)
                                     -..+.||+|++      ..++...+..                ..+++.+.++|++||..
T Consensus       326 ---------------~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l  385 (450)
T 2yxl_A          326 ---------------IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRL  385 (450)
T ss_dssp             ---------------SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ---------------hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence                           01247999995      3344332221                57888999999998743

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.68  E-value=3.7e-08  Score=93.39  Aligned_cols=97  Identities=13%  Similarity=0.140  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -.+.+|||+|||+|..++.+++.  +.++++.|++ .++.  +.++.....    ..++.+...|+.+..          
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~----~~~v~~~~~d~~~~~----------  245 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDV----AGRWKVVEGDFLREV----------  245 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGG----TTSEEEEECCTTTCC----------
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCC----CCCeEEEecCCCCCC----------
Confidence            35789999999999999999886  3578999994 4544  222221111    357888888876331          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~~  248 (335)
                                     . .||+|+++.++|+.+..  ..+++.+.++|+|||..+
T Consensus       246 ---------------p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~  283 (348)
T 3lst_A          246 ---------------P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVL  283 (348)
T ss_dssp             ---------------C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEE
T ss_pred             ---------------C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                           1 79999999999987766  689999999999988654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.67  E-value=2.9e-08  Score=91.38  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++++|||||||+|.+++.+++. + .+|++.|+++.+++.+++|+........ ..++++...|..+..+          
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~-~~rv~v~~~D~~~~l~----------  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD-DPRVDVQVDDGFMHIA----------  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT-STTEEEEESCSHHHHH----------
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC-CCceEEEECcHHHHHh----------
Confidence            5789999999999999999987 3 7999999999999999999854211111 3567777766332100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~  245 (335)
                                  ...++||+|++ |..+...     ....+++.+.++|+++|
T Consensus       144 ------------~~~~~fD~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pgG  183 (275)
T 1iy9_A          144 ------------KSENQYDVIMV-DSTEPVGPAVNLFTKGFYAGIAKALKEDG  183 (275)
T ss_dssp             ------------TCCSCEEEEEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEEE
T ss_pred             ------------hCCCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCc
Confidence                        01358999998 6654321     13678999999999987

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.67  E-value=1.9e-08  Score=95.40  Aligned_cols=105  Identities=12%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++++|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+........ ..++.+...|+.+..+.        
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~-~~rv~~~~~D~~~~l~~--------  189 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE-DPRVNLVIGDGVAFLKN--------  189 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-STTEEEEESCHHHHHHT--------
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-CCcEEEEECCHHHHHHh--------
Confidence            35689999999999999999987  47999999999999999999865310000 24678877775432100        


Q ss_pred             ccccccccCcchhhccCCccEEEEe--ccccCccc--HHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAA--DVIYSDDL--TDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlas--DviY~~~~--~~~L~~tl~~lL~~~~  245 (335)
                                   ...++||+|++.  +.......  ...+++.+.++|+++|
T Consensus       190 -------------~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG  229 (334)
T 1xj5_A          190 -------------AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGG  229 (334)
T ss_dssp             -------------SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred             -------------ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCc
Confidence                         012479999972  22221121  4789999999999987

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.66  E-value=1.5e-07  Score=82.32  Aligned_cols=82  Identities=11%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+   +.+|+++|+++.           |         +.+...|..+..            
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-----------~---------~~~~~~d~~~~~------------  110 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL-----------D---------PRVTVCDMAQVP------------  110 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-----------S---------TTEEESCTTSCS------------
T ss_pred             CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-----------C---------ceEEEeccccCC------------
Confidence            46789999999999988776   479999999975           1         223444443321            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ...++||+|+++.++++ .....+++.+.++|+++|..
T Consensus       111 -----------~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l  147 (215)
T 2zfu_A          111 -----------LEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLL  147 (215)
T ss_dssp             -----------CCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------CCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEE
Confidence                       01347999999999975 77888999999999998743

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.66  E-value=1.7e-07  Score=89.15  Aligned_cols=101  Identities=10%  Similarity=0.122  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -..++|||+|||+|..++.+++.  ..+++..|. |.+++.+++++....     ..++++...|+.+..          
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~~~----------  241 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFKDP----------  241 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSC----------
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCccccCC----------
Confidence            35679999999999999999988  457888888 689999988875433     468999999987642          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcceee
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~~~  250 (335)
                                     ...+|+|+.+.++|+.+.  ...+++.+++.|+|+|+.+|.
T Consensus       242 ---------------~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          242 ---------------LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             ---------------CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ---------------CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence                           125799999999998654  457899999999999865533

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.65  E-value=2.8e-08  Score=92.76  Aligned_cols=105  Identities=11%  Similarity=0.054  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH-ccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      -++++|||||||+|..+..+++.  ..+|+++|+++.+++.+++++.. +... . ..++.+...|..+....       
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~-~-~~~v~~~~~D~~~~~~~-------  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL-A-DPRATVRVGDGLAFVRQ-------  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-G-CTTEEEEESCHHHHHHS-------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc-C-CCcEEEEECcHHHHHHh-------
Confidence            35689999999999999999987  46999999999999999998743 2111 1 35677777765432100       


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCccc----HHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL----TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~----~~~L~~tl~~lL~~~~~  246 (335)
                                    ...++||+|++.-..+....    ...+++.+.++|+++|.
T Consensus       165 --------------~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~  205 (304)
T 3bwc_A          165 --------------TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGI  205 (304)
T ss_dssp             --------------SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEE
T ss_pred             --------------ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence                          01358999998432222111    16789999999999873

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.65  E-value=4e-08  Score=95.39  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhhcCCCCCCC-CCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc--cCCCCCCCeeEEE
Q 019839          102 ELVLADFVMHKMCTSSDFN-GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN--SGVFSHQGSVHVR  178 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~-g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N--~~~~~~~~~v~v~  178 (335)
                      +..+|.|....      ++ |.+|||||||+|..++.+|+.+.+|+++|+++.+++.++.|++.|  +     ..++.+.
T Consensus        80 ~e~vA~~~a~~------l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i  148 (410)
T 3ll7_A           80 GAVTSSYKSRF------IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNE-----GKDVNIL  148 (410)
T ss_dssp             CHHHHHHGGGG------SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEE
T ss_pred             HHHHHHHHHHh------cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEE
Confidence            45566775433      33 899999999999999999999999999999999999999999987  5     2468888


Q ss_pred             eccCCC
Q 019839          179 DLNWMN  184 (335)
Q Consensus       179 ~ldW~~  184 (335)
                      ..|..+
T Consensus       149 ~~Da~~  154 (410)
T 3ll7_A          149 TGDFKE  154 (410)
T ss_dssp             ESCGGG
T ss_pred             ECcHHH
Confidence            877655

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.64  E-value=8.7e-08  Score=83.38  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      +++.-|.+.+....   ...+|.+|||||||+|..++.+++.+.+|++.|+++..           .     ..++.+..
T Consensus         8 Ra~~KL~ei~~~~~---~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~-----~~~v~~~~   68 (191)
T 3dou_A            8 RAAFKLEFLLDRYR---VVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------E-----IAGVRFIR   68 (191)
T ss_dssp             HHHHHHHHHHHHHC---CSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------C-----CTTCEEEE
T ss_pred             cHHHHHHHHHHHcC---CCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------c-----CCCeEEEE
Confidence            46777777766541   33468999999999999999999998999999999631           1     24577777


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhh--ccCCccEEEEecccc---C--------cccHHHHHHHHHHhccCCCc
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELK--EVQRASVLLAADVIY---S--------DDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~fDlIlasDviY---~--------~~~~~~L~~tl~~lL~~~~~  246 (335)
                      .|..+.....          ...    ....  ..++||+|++.-...   .        ......+++...++|+|||.
T Consensus        69 ~D~~~~~~~~----------~~~----~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~  134 (191)
T 3dou_A           69 CDIFKETIFD----------DID----RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGN  134 (191)
T ss_dssp             CCTTSSSHHH----------HHH----HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccCHHHHH----------HHH----HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence            7766531000          000    0000  013899999832111   1        12245678888999999885


Q ss_pred             c
Q 019839          247 K  247 (335)
Q Consensus       247 ~  247 (335)
                      .
T Consensus       135 l  135 (191)
T 3dou_A          135 V  135 (191)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.63  E-value=5e-08  Score=87.68  Aligned_cols=97  Identities=11%  Similarity=0.022  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh------CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV------AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~------~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ++.+|||||||+|..++.+|+.      +.+|+++|+++.+++.++     +.     ..++.+...|+.+...      
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~-----~~~v~~~~gD~~~~~~------  144 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SD-----MENITLHQGDCSDLTT------  144 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GG-----CTTEEEEECCSSCSGG------
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----cc-----CCceEEEECcchhHHH------
Confidence            5679999999999999999986      679999999999887765     11     2467888877665300      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH-hccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR-LMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~-lL~~~~~~~  248 (335)
                              +     ......+||+|+.... +  .....++..+.+ +|++||..+
T Consensus       145 --------l-----~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv  184 (236)
T 2bm8_A          145 --------F-----EHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFI  184 (236)
T ss_dssp             --------G-----GGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEE
T ss_pred             --------H-----HhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEE
Confidence                    0     0001236999887443 3  356778888886 999998543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.63  E-value=4.3e-08  Score=90.61  Aligned_cols=104  Identities=11%  Similarity=0.046  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++++|||||||+|..+..+++.  +.+|+++|+++.+++.+++|+..++.... ..++.+...|..+..           
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~-~~~v~~~~~D~~~~l-----------  145 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE-DKRVNVFIEDASKFL-----------  145 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG-STTEEEEESCHHHHH-----------
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccC-CCcEEEEECChHHHH-----------
Confidence            5689999999999999999887  47999999999999999998765321111 246777666533210           


Q ss_pred             cccccccCcchhhccCCccEEEE--eccccCccc--HHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLA--ADVIYSDDL--TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~~--~~~L~~tl~~lL~~~~~  246 (335)
                                 ....++||+|++  .+.+.....  ...+++.+.++|+++|.
T Consensus       146 -----------~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~  187 (283)
T 2i7c_A          146 -----------ENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGY  187 (283)
T ss_dssp             -----------HHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred             -----------HhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence                       011358999998  222211111  26899999999999873

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.62  E-value=1.9e-07  Score=92.55  Aligned_cols=101  Identities=10%  Similarity=0.032  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .|.+|||+|||+|..++.+|..   +.+|++.|+++.+++.+++|++.++.     .++.+...|..+..          
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv~~~~~D~~~~~----------  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-----SNVALTHFDGRVFG----------  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCCSTTHH----------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHhh----------
Confidence            7889999999999999998876   36999999999999999999998873     45777766544320          


Q ss_pred             ccccccccCcchhhccCCccEEEEe------ccccCcc----------------cHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAA------DVIYSDD----------------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlas------DviY~~~----------------~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ....+.||+|++-      .++...+                ....+++.+.++|++||..
T Consensus       182 ------------~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~L  242 (479)
T 2frx_A          182 ------------AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL  242 (479)
T ss_dssp             ------------HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ------------hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence                        0023479999971      1222111                1346788889999998753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.62  E-value=4.7e-08  Score=96.46  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      ++.+++..+       ...+|.+|||+|||+|..++.+|..   ..+|++.|+++.+++.++.|++.++.     . +.+
T Consensus        89 ss~l~a~~L-------~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----~-v~~  155 (464)
T 3m6w_A           89 SAQAVGVLL-------DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----P-LAV  155 (464)
T ss_dssp             TTHHHHHHH-------CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----C-CEE
T ss_pred             HHHHHHHhc-------CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----e-EEE
Confidence            355555554       2357899999999999999998876   25899999999999999999999873     3 566


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccccCcc----------------cHHHHHH
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVIYSDD----------------LTDALFH  235 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDviY~~~----------------~~~~L~~  235 (335)
                      ...|..+..                      ....+.||+|++      ..++...+                ....+++
T Consensus       156 ~~~Da~~l~----------------------~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~  213 (464)
T 3m6w_A          156 TQAPPRALA----------------------EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLA  213 (464)
T ss_dssp             ECSCHHHHH----------------------HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHH
T ss_pred             EECCHHHhh----------------------hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHH
Confidence            554432210                      002358999995      12221111                1266888


Q ss_pred             HHHHhccCCCcc
Q 019839          236 TLKRLMPLGSKK  247 (335)
Q Consensus       236 tl~~lL~~~~~~  247 (335)
                      .+.++|++||..
T Consensus       214 ~a~~~LkpGG~L  225 (464)
T 3m6w_A          214 QASRLLGPGGVL  225 (464)
T ss_dssp             HHHTTEEEEEEE
T ss_pred             HHHHhcCCCcEE
Confidence            888999998743

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.62  E-value=9.1e-08  Score=90.71  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||+|||+|..+..+++.  +.+|+++|+ +.+++.++.           ..++.+...|..+..           
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-----------  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----------SNNLTYVGGDMFTSI-----------  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------BTTEEEEECCTTTCC-----------
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----------CCCcEEEeccccCCC-----------
Confidence            4579999999999999999877  568999999 888876543           123778887765431           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccC---CCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPL---GSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~---~~~~~  248 (335)
                                     ..||+|+++.++++....+  .+++.+.++|+|   +|..+
T Consensus       245 ---------------p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~  285 (352)
T 1fp2_A          245 ---------------PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT  285 (352)
T ss_dssp             ---------------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred             ---------------CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence                           1499999999999877666  899999999999   87544

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.62  E-value=3.4e-08  Score=91.89  Aligned_cols=101  Identities=12%  Similarity=0.056  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH--ccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL--NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~--N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ++++|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..  +...   ..++.+...|..+..+        
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~l~--------  158 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD---DPRAEIVIANGAEYVR--------  158 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHGG--------
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC---CCceEEEECcHHHHHh--------
Confidence            4689999999999999999987  47999999999999999999854  2210   2467777766432100        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccC-cc-----cHHHHHHHHHHhccCCCc
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYS-DD-----LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-~~-----~~~~L~~tl~~lL~~~~~  246 (335)
                                    ...++||+|++ |.... ..     ....+++.+.++|+++|.
T Consensus       159 --------------~~~~~fD~Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~  200 (296)
T 1inl_A          159 --------------KFKNEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDGV  200 (296)
T ss_dssp             --------------GCSSCEEEEEE-EC----------CCSHHHHHHHHHHEEEEEE
T ss_pred             --------------hCCCCceEEEE-cCCCcccCchhhhhHHHHHHHHHHhcCCCcE
Confidence                          01347999996 44321 11     236789999999999873

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.62  E-value=7.4e-08  Score=90.37  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH-ccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ++++|||||||+|..+..+++.  +.+|+++|+++.+++.+++|+.. |..... ..++++...|..+..          
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~-~~~v~~~~~D~~~~l----------  145 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD-DPRAVLVIDDARAYL----------  145 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG-CTTEEEEESCHHHHH----------
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc-CCceEEEEchHHHHH----------
Confidence            5689999999999999999987  57999999999999999999864 321010 246777666533210          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc---c-----cHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD---D-----LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~---~-----~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ....++||+|++. .....   .     ....+++.+.++|+++|..
T Consensus       146 ------------~~~~~~fD~Ii~d-~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l  191 (314)
T 1uir_A          146 ------------ERTEERYDVVIID-LTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVM  191 (314)
T ss_dssp             ------------HHCCCCEEEEEEE-CCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEE
T ss_pred             ------------HhcCCCccEEEEC-CCCcccccCcchhccHHHHHHHHHHhcCCCcEE
Confidence                        0123589999984 43322   1     1478899999999998843

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.61  E-value=6.4e-08  Score=89.30  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCC------CCCCeeEEEeccCCCCCCCCccC
Q 019839          120 NGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVF------SHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~------~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ++++|||||||+|..++.+++.+ .+|++.|+++.+++.+++|+ ......      ....++.+...|..+.       
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~-------  146 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF-------  146 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH-------
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH-------
Confidence            56899999999999999999884 59999999999999999998 321000      0034666666542211       


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCc----cc-HHHHHHHHHHhccCCCc
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DL-TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~-~~~L~~tl~~lL~~~~~  246 (335)
                                      +...++||+|++ |..+..    .. ...+++.+.++|+++|.
T Consensus       147 ----------------l~~~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~  188 (281)
T 1mjf_A          147 ----------------IKNNRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGI  188 (281)
T ss_dssp             ----------------HHHCCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEE
T ss_pred             ----------------hcccCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence                            001357999997 554321    11 46789999999999873

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.60  E-value=5.6e-08  Score=93.98  Aligned_cols=105  Identities=10%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCe-eEEEeccCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~-v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .|.+|||++||+|..||.+|+.  | .+|++.|+++.+++.+++|+++|+.    ..+ +.+...|-.+...        
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl----~~~~v~v~~~Da~~~l~--------  119 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI----PEDRYEIHGMEANFFLR--------  119 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHHH--------
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCceEEEEeCCHHHHHH--------
Confidence            5789999999999999999985  4 6899999999999999999999984    233 6666554222100        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK  260 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~  260 (335)
                              +     ...++||+|+. |. |.  ....++..+.++++++|  +     +|++++.
T Consensus       120 --------~-----~~~~~fD~V~l-DP-~g--~~~~~l~~a~~~Lk~gG--l-----l~~t~t~  160 (392)
T 3axs_A          120 --------K-----EWGFGFDYVDL-DP-FG--TPVPFIESVALSMKRGG--I-----LSLTATD  160 (392)
T ss_dssp             --------S-----CCSSCEEEEEE-CC-SS--CCHHHHHHHHHHEEEEE--E-----EEEEECC
T ss_pred             --------H-----hhCCCCcEEEE-CC-Cc--CHHHHHHHHHHHhCCCC--E-----EEEEecc
Confidence                    0     01247999996 44 32  23568888888898876  5     7777743

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.59  E-value=3e-07  Score=85.61  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.|.+..   ...++.+|||+|||+|..+..+++.+++|++.|+++.+++.++.|+..       ..++.+...|..+
T Consensus        38 i~~~Iv~~l---~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~gD~l~  107 (295)
T 3gru_A           38 FVNKAVESA---NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIWGDALK  107 (295)
T ss_dssp             HHHHHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEESCTTT
T ss_pred             HHHHHHHhc---CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEECchhh
Confidence            344455443   445788999999999999999999999999999999999999999872       3568888888776


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus       108 ~  108 (295)
T 3gru_A          108 V  108 (295)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.58  E-value=3.2e-08  Score=92.99  Aligned_cols=99  Identities=13%  Similarity=0.069  Sum_probs=72.2

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+||+||||+|.++..+++.  +.+|++.|+++.+++.+++++..+.     ..++++...|..+....          
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-----~~rv~v~~~Da~~~l~~----------  154 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-----APRVKIRVDDARMVAES----------  154 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-----TTTEEEEESCHHHHHHT----------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-----CCceEEEECcHHHHHhh----------
Confidence            349999999999999999984  6799999999999999999986543     35677776653321000          


Q ss_pred             ccccccCcchhhccCCccEEEEeccccC---cc--cHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYS---DD--LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~---~~--~~~~L~~tl~~lL~~~~~  246 (335)
                                 ...++||+|++ |+...   ..  ....+++.++++|+++|.
T Consensus       155 -----------~~~~~fDvIi~-D~~~~~~~~~~L~t~efl~~~~r~LkpgGv  195 (317)
T 3gjy_A          155 -----------FTPASRDVIIR-DVFAGAITPQNFTTVEFFEHCHRGLAPGGL  195 (317)
T ss_dssp             -----------CCTTCEEEEEE-CCSTTSCCCGGGSBHHHHHHHHHHEEEEEE
T ss_pred             -----------ccCCCCCEEEE-CCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence                       01358999997 33222   11  237899999999999883

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.58  E-value=5.6e-08  Score=95.74  Aligned_cols=119  Identities=8%  Similarity=0.009  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      ++.+++..+       ...+|.+|||+|||+|..++.+|..   +.+|++.|+++.+++.+++|++.++.     .++.+
T Consensus        93 ss~l~~~~L-------~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-----~nv~v  160 (456)
T 3m4x_A           93 SAMIVGTAA-------AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-----SNAIV  160 (456)
T ss_dssp             TTHHHHHHH-------CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-----SSEEE
T ss_pred             HHHHHHHHc-------CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEE
Confidence            455566655       2357889999999999999988876   36999999999999999999999873     45666


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEec------cccCc----------------ccHHHHHH
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD------VIYSD----------------DLTDALFH  235 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD------viY~~----------------~~~~~L~~  235 (335)
                      ...|..+..                      ....+.||+|++--      ++-..                .....+++
T Consensus       161 ~~~Da~~l~----------------------~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~  218 (456)
T 3m4x_A          161 TNHAPAELV----------------------PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILS  218 (456)
T ss_dssp             ECCCHHHHH----------------------HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHH
T ss_pred             EeCCHHHhh----------------------hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHH
Confidence            655432210                      01235899999721      11111                12236788


Q ss_pred             HHHHhccCCCcceeeceEEEEEEe
Q 019839          236 TLKRLMPLGSKKVLVNMVLYLALE  259 (335)
Q Consensus       236 tl~~lL~~~~~~~~~~p~i~ia~~  259 (335)
                      .+.++|++||..      +|..|.
T Consensus       219 ~a~~~LkpGG~L------vYsTCs  236 (456)
T 3m4x_A          219 SAIKMLKNKGQL------IYSTCT  236 (456)
T ss_dssp             HHHHTEEEEEEE------EEEESC
T ss_pred             HHHHhcCCCcEE------EEEEee
Confidence            889999998743      565554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.58  E-value=4.9e-08  Score=91.98  Aligned_cols=103  Identities=11%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ++++|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+........ ..++++...|+.+..           
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~-~~~v~~~~~D~~~~l-----------  183 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE-DKRVNVFIEDASKFL-----------  183 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG-STTEEEEESCHHHHH-----------
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-CCcEEEEEccHHHHH-----------
Confidence            5689999999999999999987  47999999999999999999865210010 246777777654320           


Q ss_pred             cccccccCcchhhccCCccEEEEecccc--C-c-cc-HHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIY--S-D-DL-TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY--~-~-~~-~~~L~~tl~~lL~~~~~  246 (335)
                                 ....++||+|++ |...  . . .. ...+++.+.++|+++|.
T Consensus       184 -----------~~~~~~fDvIi~-d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~  225 (321)
T 2pt6_A          184 -----------ENVTNTYDVIIV-DSSDPIGPAETLFNQNFYEKIYNALKPNGY  225 (321)
T ss_dssp             -----------HHCCSCEEEEEE-ECCCSSSGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred             -----------hhcCCCceEEEE-CCcCCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence                       001357999997 3321  1 1 11 27899999999999873

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.57  E-value=1.6e-07  Score=89.69  Aligned_cols=92  Identities=9%  Similarity=0.057  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -.+.+|||+|||+|..+..+++..  .++++.|+ +.+++.++.           ..++.+...|+.+..          
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~----------  265 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFASV----------  265 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCC----------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCcccCC----------
Confidence            356899999999999999998874  57888899 788765542           134788888776531          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~~~~~~  248 (335)
                                      ..||+|+++.++++....+  .+++.+.++|+|+|..+
T Consensus       266 ----------------~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~  303 (372)
T 1fp1_D          266 ----------------PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI  303 (372)
T ss_dssp             ----------------CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----------------CCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                            1389999999999877766  89999999999988654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.57  E-value=3.2e-07  Score=79.19  Aligned_cols=126  Identities=13%  Similarity=0.053  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      +++.-|.+.+....   ...++.+|||||||+|..++.+++.    +.+|+++|+++..           .     ..++
T Consensus         5 r~~~kl~~~~~~~~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-----~~~v   65 (201)
T 2plw_A            5 RAAYKLIELDNKYL---FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-----IPNV   65 (201)
T ss_dssp             TTHHHHHHHHHHHC---CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-----CTTC
T ss_pred             HHHHHHHHHHHHcC---CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-----CCCc
Confidence            45666777554431   2346789999999999999999876    3689999999721           1     2346


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcc--hh---hccCCccEEEEeccccCc-----cc------HHHHHHHHHH
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSS--EL---KEVQRASVLLAADVIYSD-----DL------TDALFHTLKR  239 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~--~~---~~~~~fDlIlasDviY~~-----~~------~~~L~~tl~~  239 (335)
                      .+...|+.+......  .+... .....+...  ..   -....||+|++.-.++..     +.      ...+++.+.+
T Consensus        66 ~~~~~d~~~~~~~~~--~~~~~-i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~  142 (201)
T 2plw_A           66 YFIQGEIGKDNMNNI--KNINY-IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQ  142 (201)
T ss_dssp             EEEECCTTTTSSCCC--------------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEccccchhhhhh--ccccc-cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            677777665420000  00000 000000000  00   123589999986555442     11      1247888999


Q ss_pred             hccCCCcc
Q 019839          240 LMPLGSKK  247 (335)
Q Consensus       240 lL~~~~~~  247 (335)
                      +|+|||..
T Consensus       143 ~LkpgG~l  150 (201)
T 2plw_A          143 YINIGGTY  150 (201)
T ss_dssp             HEEEEEEE
T ss_pred             HccCCCEE
Confidence            99998843

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.57  E-value=4.3e-08  Score=91.64  Aligned_cols=102  Identities=10%  Similarity=0.026  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHH--ccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL--NSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~--N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      .++++|||||||+|..++.+++..  .+|+++|+++.+++.+++|+..  ++..   ..++++...|..+..        
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~---~~rv~v~~~Da~~~l--------  162 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS---SSKLTLHVGDGFEFM--------  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHH--------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHH--------
Confidence            366899999999999999999874  7999999999999999999865  2210   246776665532210        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCCc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~~  246 (335)
                                    ....++||+|++ |......     ....+++.+.++|+++|.
T Consensus       163 --------------~~~~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~  204 (304)
T 2o07_A          163 --------------KQNQDAFDVIIT-DSSDPMGPAESLFKESYYQLMKTALKEDGV  204 (304)
T ss_dssp             --------------HTCSSCEEEEEE-ECC-----------CHHHHHHHHHEEEEEE
T ss_pred             --------------hhCCCCceEEEE-CCCCCCCcchhhhHHHHHHHHHhccCCCeE
Confidence                          001358999998 4433211     235689999999999873

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.54  E-value=7e-08  Score=90.67  Aligned_cols=103  Identities=14%  Similarity=0.076  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+++|||||||+|..++.+++.  +.+|+++|+++.+++.+++|+..+..... ..++.+...|..+..           
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~-~~rv~~~~~D~~~~l-----------  175 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS-HPKLDLFCGDGFEFL-----------  175 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG-CTTEEEECSCHHHHH-----------
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC-CCCEEEEEChHHHHH-----------
Confidence            4689999999999999999987  47999999999999999999854310000 246777665543210           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---c-cc-HHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---D-DL-TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---~-~~-~~~L~~tl~~lL~~~~~  246 (335)
                                 ....++||+|++ |....   . .. ...+++.+.++|+++|.
T Consensus       176 -----------~~~~~~fD~Ii~-d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~  217 (314)
T 2b2c_A          176 -----------KNHKNEFDVIIT-DSSDPVGPAESLFGQSYYELLRDALKEDGI  217 (314)
T ss_dssp             -----------HHCTTCEEEEEE-CCC-------------HHHHHHHHEEEEEE
T ss_pred             -----------HhcCCCceEEEE-cCCCCCCcchhhhHHHHHHHHHhhcCCCeE
Confidence                       012358999997 44321   1 11 26889999999999873

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.53  E-value=3.8e-07  Score=89.05  Aligned_cols=114  Identities=17%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      .++.+++..+       ...+|.+|||+|||+|..++.++..+  .+|++.|+++.+++.++.|+..++.      ++.+
T Consensus       233 ~~s~~~~~~l-------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~  299 (429)
T 1sqg_A          233 ASAQGCMTWL-------APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATV  299 (429)
T ss_dssp             HHHHTHHHHH-------CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEE
T ss_pred             HHHHHHHHHc-------CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC------CeEE
Confidence            3455555554       23578899999999999999999875  6999999999999999999998763      3566


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE------eccccCccc----------------HHHHHH
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA------ADVIYSDDL----------------TDALFH  235 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla------sDviY~~~~----------------~~~L~~  235 (335)
                      ...|..+...                     ....++||+|++      ..++...+.                ...+++
T Consensus       300 ~~~D~~~~~~---------------------~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~  358 (429)
T 1sqg_A          300 KQGDGRYPSQ---------------------WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILD  358 (429)
T ss_dssp             EECCTTCTHH---------------------HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHH
T ss_pred             EeCchhhchh---------------------hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHH
Confidence            6666554310                     001247999996      233333222                147788


Q ss_pred             HHHHhccCCCcc
Q 019839          236 TLKRLMPLGSKK  247 (335)
Q Consensus       236 tl~~lL~~~~~~  247 (335)
                      .+.++|++||..
T Consensus       359 ~a~~~LkpGG~l  370 (429)
T 1sqg_A          359 AIWPHLKTGGTL  370 (429)
T ss_dssp             HHGGGEEEEEEE
T ss_pred             HHHHhcCCCCEE
Confidence            888999998743

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.51  E-value=3.1e-07  Score=88.65  Aligned_cols=109  Identities=11%  Similarity=0.057  Sum_probs=81.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC----------------------------------------C
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA----------------------------------------W  143 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~----------------------------------------~  143 (335)
                      .||..|+...   ....+.+|||+|||+|.+.+.+|..+                                        .
T Consensus       182 ~lAa~ll~~~---~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          182 TLAAGLIYLT---PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             HHHHHHHHTS---CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             HHHHHHHHhh---CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            4666666552   44567899999999999999998874                                        3


Q ss_pred             EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecc
Q 019839          144 TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADV  223 (335)
Q Consensus       144 ~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDv  223 (335)
                      +|++.|+++.+++.++.|+..|+.    ...+++...|+.+...                        ..+||+||+.-.
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~gl----~~~i~~~~~D~~~l~~------------------------~~~~D~Iv~NPP  310 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIAGV----DEYIEFNVGDATQFKS------------------------EDEFGFIITNPP  310 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEECCGGGCCC------------------------SCBSCEEEECCC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhcCc------------------------CCCCcEEEECCC
Confidence            699999999999999999999874    2468888887765421                        237999998655


Q ss_pred             ccC----cccHHHHHHHHHHhccC
Q 019839          224 IYS----DDLTDALFHTLKRLMPL  243 (335)
Q Consensus       224 iY~----~~~~~~L~~tl~~lL~~  243 (335)
                      ...    ......+.+.+.+.+++
T Consensus       311 yg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          311 YGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcCccCCHHHHHHHHHHHHHHHhh
Confidence            322    23455677777777775

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.49  E-value=4.3e-07  Score=87.88  Aligned_cols=109  Identities=11%  Similarity=0.036  Sum_probs=79.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC----------------------------------------
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW----------------------------------------  143 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~----------------------------------------  143 (335)
                      .||..|+...   ....+..|||.+||+|.+.|.+|..+.                                        
T Consensus       188 ~lAa~ll~l~---~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          188 TMAAALVLLT---SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             HHHHHHHHHS---CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             HHHHHHHHHh---CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            4555555542   344678999999999999999988753                                        


Q ss_pred             EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecc
Q 019839          144 TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADV  223 (335)
Q Consensus       144 ~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDv  223 (335)
                      +|++.|+++.+++.++.|+..|+.    ...+.+...|+.+...                        ...||+|++.-.
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~~~~------------------------~~~fD~Iv~NPP  316 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGL----GDLITFRQLQVADFQT------------------------EDEYGVVVANPP  316 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTC----TTCSEEEECCGGGCCC------------------------CCCSCEEEECCC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChHhCCC------------------------CCCCCEEEECCC
Confidence            499999999999999999999874    2457888877665421                        237999998644


Q ss_pred             ccCc----ccHHHHHHHHHHhccC
Q 019839          224 IYSD----DLTDALFHTLKRLMPL  243 (335)
Q Consensus       224 iY~~----~~~~~L~~tl~~lL~~  243 (335)
                      ....    .....|.+.+.+.+++
T Consensus       317 Yg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          317 YGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccccCCchhHHHHHHHHHHHHhc
Confidence            3221    2345567777777765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.49  E-value=7.7e-07  Score=76.36  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C----------CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A----------WTVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~----------~~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      ++.-|.+.....   ...-++.+|||||||+|..++.+++. +          .+|+++|+++..           .   
T Consensus         6 ~~~kl~~l~~~~---~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~---   68 (196)
T 2nyu_A            6 SAFKLLEVNERH---QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P---   68 (196)
T ss_dssp             HHHHHHHHHHHH---CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C---
T ss_pred             HHHHHHHHHHhc---CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c---
Confidence            455566655444   13346889999999999999999987 4          789999999721           0   


Q ss_pred             CCCCeeEEE-eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----cc-------HHHHHHHH
Q 019839          170 SHQGSVHVR-DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DL-------TDALFHTL  237 (335)
Q Consensus       170 ~~~~~v~v~-~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~-------~~~L~~tl  237 (335)
                        ..++.+. ..|+.+....           ...    .......+||+|++.-.++..    ..       ...+++.+
T Consensus        69 --~~~~~~~~~~d~~~~~~~-----------~~~----~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (196)
T 2nyu_A           69 --LEGATFLCPADVTDPRTS-----------QRI----LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT  131 (196)
T ss_dssp             --CTTCEEECSCCTTSHHHH-----------HHH----HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCeEEEeccCCCHHHH-----------HHH----HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence              1234555 4443321000           000    000012479999985433321    11       14788999


Q ss_pred             HHhccCCCcc
Q 019839          238 KRLMPLGSKK  247 (335)
Q Consensus       238 ~~lL~~~~~~  247 (335)
                      .++|+++|..
T Consensus       132 ~~~LkpgG~l  141 (196)
T 2nyu_A          132 PDILQPGGTF  141 (196)
T ss_dssp             HHHEEEEEEE
T ss_pred             HHHhcCCCEE
Confidence            9999998843

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.48  E-value=4.8e-07  Score=86.50  Aligned_cols=92  Identities=11%  Similarity=0.092  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -.+.+|||+|||+|..++.+++.  +.++++.|+ +.+++.++.           ..++.+...|+.+..+         
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~p---------  260 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGVP---------  260 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC---------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCCC---------
Confidence            34689999999999999999886  468999999 777765432           2468888888765311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      .. |+|+++.++|+..  ....+++.+.++|+|+|..+
T Consensus       261 ----------------~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~  297 (368)
T 3reo_A          261 ----------------KG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVI  297 (368)
T ss_dssp             ----------------CC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ----------------CC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence                            13 9999999999654  44578999999999998654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.48  E-value=6.5e-07  Score=84.70  Aligned_cols=98  Identities=9%  Similarity=-0.016  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC-------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          120 NGIISLELGAGTGLAGILLSRVA-------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~-------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      .+.+|||+|||+|...+.+++..       .+|++.|+++.+++.++.|+..++.      ++.+...|+....      
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~------~~~i~~~D~l~~~------  197 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLANL------  197 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSCC------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC------CceEEECCCCCcc------
Confidence            56799999999999999888763       6899999999999999999988762      4566666655431      


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcc------------------cHHHHHHHHHHhccCCCcc
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD------------------LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~------------------~~~~L~~tl~~lL~~~~~~  247 (335)
                                        ...+||+|++...+....                  ....++..+.++|+++|..
T Consensus       198 ------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~  252 (344)
T 2f8l_A          198 ------------------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYL  252 (344)
T ss_dssp             ------------------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEE
T ss_pred             ------------------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEE
Confidence                              124799999987742111                  1125788888999987743

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.47  E-value=7.7e-07  Score=85.81  Aligned_cols=110  Identities=13%  Similarity=0.098  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC---------------------------------------
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---------------------------------------  143 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~---------------------------------------  143 (335)
                      ..||..|+...   ....+..|||.+||+|.+.|.+|..+.                                       
T Consensus       180 e~LAaall~l~---~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          180 ENMAAAIILLS---NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             HHHHHHHHHHT---TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHh---CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            35666665542   344678999999999999999987753                                       


Q ss_pred             -EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEec
Q 019839          144 -TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAAD  222 (335)
Q Consensus       144 -~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasD  222 (335)
                       +|++.|+++.+++.++.|+..++.    ...+.+...|..+...                        ...||+|++.-
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~l~~------------------------~~~fD~Iv~NP  308 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGL----EDVVKLKQMRLQDFKT------------------------NKINGVLISNP  308 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCGGGCCC------------------------CCCSCEEEECC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChHHCCc------------------------cCCcCEEEECC
Confidence             499999999999999999999874    3458888877665421                        23799999754


Q ss_pred             cccC----cccHHHHHHHHHHhccC
Q 019839          223 VIYS----DDLTDALFHTLKRLMPL  243 (335)
Q Consensus       223 viY~----~~~~~~L~~tl~~lL~~  243 (335)
                      ....    ......|.+.+.+.+++
T Consensus       309 PYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          309 PYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             CCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             chhhccCCHHHHHHHHHHHHHHHhh
Confidence            4322    23456677778888875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.46  E-value=4.8e-07  Score=82.47  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.|.+..   ....+.+|||+|||+|..+..+++.+++|++.|+++.+++.+++|+..       ..++.+...|..+
T Consensus        17 i~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~~~   86 (255)
T 3tqs_A           17 VLQKIVSAI---HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDALQ   86 (255)
T ss_dssp             HHHHHHHHH---CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCTTT
T ss_pred             HHHHHHHhc---CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcchHh
Confidence            334444443   445788999999999999999999999999999999999999999864       2468888888766


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        87 ~   87 (255)
T 3tqs_A           87 F   87 (255)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.45  E-value=5.8e-07  Score=81.14  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .+++.+....   ....+.+|||+|||+|..+..++..+.+|+++|+++.+++.+++|+..       ..++.+...|..
T Consensus        17 ~~~~~i~~~~---~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~   86 (244)
T 1qam_A           17 HNIDKIMTNI---RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDIL   86 (244)
T ss_dssp             HHHHHHHTTC---CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGG
T ss_pred             HHHHHHHHhC---CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHH
Confidence            3455565543   345788999999999999999999999999999999999999988753       145777777765


Q ss_pred             CC
Q 019839          184 NP  185 (335)
Q Consensus       184 ~~  185 (335)
                      +.
T Consensus        87 ~~   88 (244)
T 1qam_A           87 QF   88 (244)
T ss_dssp             GC
T ss_pred             hC
Confidence            43

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.44  E-value=4.5e-07  Score=86.07  Aligned_cols=91  Identities=13%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|||+|||+|..+..+++.  +.++++.|+ +.+++.++.           ..++.+...|+.+..           
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-----------  249 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFKSI-----------  249 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTTCC-----------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCCCC-----------
Confidence            4579999999999999999887  458999999 677754432           134788888776521           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHH--HHHHHHHHhccC---CCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTD--ALFHTLKRLMPL---GSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~--~L~~tl~~lL~~---~~~~~  248 (335)
                                     ..||+|+++.++|+....+  .+++.+.++|+|   +|..+
T Consensus       250 ---------------~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~  290 (358)
T 1zg3_A          250 ---------------PSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVI  290 (358)
T ss_dssp             ---------------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred             ---------------CCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence                           1599999999999877755  999999999999   87554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.43  E-value=8.7e-08  Score=87.53  Aligned_cols=62  Identities=13%  Similarity=0.048  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCch-------HHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGN-------YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~-------~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      .++.+|||+|||+|..++.+|+.+.+|+++|+++       .+++.++.|++.|+.    ..++.+...|..+
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~  150 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAE  150 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHH
Confidence            3578999999999999999999999999999999       999999999988863    1347777766543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.43  E-value=8.5e-07  Score=84.67  Aligned_cols=92  Identities=12%  Similarity=0.071  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -.+.+|||+|||+|..++.+++.  +.++++.|+ +.+++.++.           ..++.+...|+.+..+         
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p---------  258 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKEVP---------  258 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCC---------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCCCC---------
Confidence            35689999999999999998886  468999999 777765432           2468888888776311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      .. |+|+++.++|+.  +....+++.+++.|+|+|..+
T Consensus       259 ----------------~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~  295 (364)
T 3p9c_A          259 ----------------SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVV  295 (364)
T ss_dssp             ----------------CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ----------------CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence                            13 999999999965  455688999999999988654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.42  E-value=8.8e-08  Score=88.36  Aligned_cols=116  Identities=13%  Similarity=0.013  Sum_probs=69.7

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCe
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS  174 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~  174 (335)
                      |..+-+++.-|.+.+...    ...+|.+|||||||+|..+..+++. .+|++.|+++ ++..++.+...+.   ....+
T Consensus        61 ~~~~sR~a~KL~~i~~~~----~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~---~~~~~  131 (276)
T 2wa2_A           61 GHAVSRGTAKLAWIDERG----GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVE---TFGWN  131 (276)
T ss_dssp             ----CHHHHHHHHHHHTT----SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCC---CTTGG
T ss_pred             CCcCchHHHHHHHHHHcC----CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhh---hcCCC
Confidence            445667787777766542    3457899999999999999999988 7899999997 4322111100000   00114


Q ss_pred             eEEE--eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc-----H--HHHHHHHHHhccCCC
Q 019839          175 VHVR--DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL-----T--DALFHTLKRLMPLGS  245 (335)
Q Consensus       175 v~v~--~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~-----~--~~L~~tl~~lL~~~~  245 (335)
                      +.+.  ..|..+.                         ..++||+|++.-. +....     .  -.+++.+.++|+|+|
T Consensus       132 v~~~~~~~D~~~l-------------------------~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG  185 (276)
T 2wa2_A          132 LITFKSKVDVTKM-------------------------EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQ  185 (276)
T ss_dssp             GEEEECSCCGGGC-------------------------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             eEEEeccCcHhhC-------------------------CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence            4544  3332221                         1348999998544 32211     1  126788999999988

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.38  E-value=1.4e-07  Score=86.41  Aligned_cols=116  Identities=14%  Similarity=-0.005  Sum_probs=72.6

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCC-CCCC
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF-SHQG  173 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~-~~~~  173 (335)
                      +..+=+++.-|.+.+...    ...+|.+|||||||+|..+..+++. .+|++.|+++ ++..++.    +.... ....
T Consensus        53 ~~~~sR~a~KL~~i~~~~----~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~----~~~~~~~~~~  122 (265)
T 2oxt_A           53 GLSVSRGTAKLAWMEERG----YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHE----VPRITESYGW  122 (265)
T ss_dssp             CBCSSTHHHHHHHHHHHT----SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCC----CCCCCCBTTG
T ss_pred             CCccchHHHHHHHHHHcC----CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhh----hhhhhhccCC
Confidence            445567788887776553    3457889999999999999999988 7899999997 4221111    10000 0011


Q ss_pred             eeEEE--eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccH----H---HHHHHHHHhccCC
Q 019839          174 SVHVR--DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT----D---ALFHTLKRLMPLG  244 (335)
Q Consensus       174 ~v~v~--~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~----~---~L~~tl~~lL~~~  244 (335)
                      ++.+.  ..|..+.                         ...+||+|++.-. +.....    .   .+++.+.++|+|+
T Consensus       123 ~v~~~~~~~D~~~l-------------------------~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG  176 (265)
T 2oxt_A          123 NIVKFKSRVDIHTL-------------------------PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKN  176 (265)
T ss_dssp             GGEEEECSCCTTTS-------------------------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CeEEEecccCHhHC-------------------------CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccC
Confidence            45554  4443321                         1247999998544 222111    1   2678889999999


Q ss_pred             Cc
Q 019839          245 SK  246 (335)
Q Consensus       245 ~~  246 (335)
                      |.
T Consensus       177 G~  178 (265)
T 2oxt_A          177 PS  178 (265)
T ss_dssp             TT
T ss_pred             CC
Confidence            83

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.38  E-value=1e-06  Score=81.07  Aligned_cols=60  Identities=15%  Similarity=0.060  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ...++ +|||+|||+|..+..+++.+++|++.|+++.+++.+++|+..        .++.+...|..+.
T Consensus        44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l~~  103 (271)
T 3fut_A           44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDALLY  103 (271)
T ss_dssp             CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGGGS
T ss_pred             CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChhhC
Confidence            34567 999999999999999999999999999999999999988751        3577777776553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.35  E-value=1.7e-07  Score=85.79  Aligned_cols=92  Identities=9%  Similarity=-0.076  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH--ccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL--NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~--N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+++|||||||+|.++..+++.+.+|+++|+++.+++.+++++..  +...   ..++.+...|-.+.            
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~---~~rv~~~~~D~~~~------------  136 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN---NKNFTHAKQLLDLD------------  136 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT---CTTEEEESSGGGSC------------
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCeEEEEechHHHH------------
Confidence            568999999999998887776678999999999999999877532  1100   24566654442221            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                   . ++||+|++. .    .....+++.+.++|+++|
T Consensus       137 -------------~-~~fD~Ii~d-~----~dp~~~~~~~~~~L~pgG  165 (262)
T 2cmg_A          137 -------------I-KKYDLIFCL-Q----EPDIHRIDGLKRMLKEDG  165 (262)
T ss_dssp             -------------C-CCEEEEEES-S----CCCHHHHHHHHTTEEEEE
T ss_pred             -------------H-hhCCEEEEC-C----CChHHHHHHHHHhcCCCc
Confidence                         1 479999974 2    223348999999999988

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.32  E-value=1.8e-06  Score=84.64  Aligned_cols=114  Identities=11%  Similarity=0.033  Sum_probs=79.6

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---------------CCEEEEecCchHHHHHHHHHHHHccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---------------AWTVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---------------~~~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      ++++|....   ....+.+|||.|||+|...+.+++.               ..++++.|+++.++..++.|+..++...
T Consensus       159 v~~~mv~~l---~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          159 LIQAMVDCI---NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             HHHHHHHHH---CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHh---CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            455555543   2346789999999999988888764               3679999999999999999998876310


Q ss_pred             CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc-----------------HHH
Q 019839          170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL-----------------TDA  232 (335)
Q Consensus       170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~-----------------~~~  232 (335)
                         ..+.+...|.....                        ...+||+|++...+.....                 .-.
T Consensus       236 ---~~~~i~~gD~l~~~------------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~  288 (445)
T 2okc_A          236 ---DRSPIVCEDSLEKE------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN  288 (445)
T ss_dssp             ---SCCSEEECCTTTSC------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHH
T ss_pred             ---CCCCEeeCCCCCCc------------------------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHH
Confidence               13445555543321                        1137999999766543211                 137


Q ss_pred             HHHHHHHhccCCCcce
Q 019839          233 LFHTLKRLMPLGSKKV  248 (335)
Q Consensus       233 L~~tl~~lL~~~~~~~  248 (335)
                      ++..+.++|+++|..+
T Consensus       289 fl~~~~~~Lk~gG~~a  304 (445)
T 2okc_A          289 FLQHMMLMLKTGGRAA  304 (445)
T ss_dssp             HHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHhccCCEEE
Confidence            8888889999987654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.30  E-value=1.5e-06  Score=83.95  Aligned_cols=105  Identities=15%  Similarity=0.015  Sum_probs=73.2

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      ..+++++.+..   ...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+              .++.+..
T Consensus        25 ~~l~~~~~~~~---~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~~~   87 (421)
T 2ih2_A           25 PEVVDFMVSLA---EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGIL   87 (421)
T ss_dssp             HHHHHHHHHHC---CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEE
T ss_pred             HHHHHHHHHhh---ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcEEe
Confidence            45677777764   2245679999999999999999875   47999999998877555              1355666


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-----------------------------cH
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----------------------------LT  230 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----------------------------~~  230 (335)
                      .|+.+..                        ..++||+|++........                             ..
T Consensus        88 ~D~~~~~------------------------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (421)
T 2ih2_A           88 ADFLLWE------------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLY  143 (421)
T ss_dssp             SCGGGCC------------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHH
T ss_pred             CChhhcC------------------------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHH
Confidence            6554321                        124899999964443211                             23


Q ss_pred             HHHHHHHHHhccCCCcce
Q 019839          231 DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       231 ~~L~~tl~~lL~~~~~~~  248 (335)
                      ..+++.+.++|+++|..+
T Consensus       144 ~~fl~~~~~~Lk~~G~~~  161 (421)
T 2ih2_A          144 GAFLEKAVRLLKPGGVLV  161 (421)
T ss_dssp             HHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEE
Confidence            367888999999987543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.28  E-value=4.8e-06  Score=76.58  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             CeEEEEcCcc---CHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          122 IISLELGAGT---GLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       122 ~~VLELG~Gt---GL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+|||||||+   |.+.-++.+.  +++|+..|.++.||+.++.++..+.     ..++.+...|..+....        
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~~~~--------  146 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDPASI--------  146 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCHHHH--------
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccChhhh--------
Confidence            5899999996   4555444443  5799999999999999998876432     35788888887663100        


Q ss_pred             ccccccccCcchhhccCCcc-----EEEEeccccCccc---HHHHHHHHHHhccCCCc
Q 019839          197 ASQERYSWNSSELKEVQRAS-----VLLAADVIYSDDL---TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fD-----lIlasDviY~~~~---~~~L~~tl~~lL~~~~~  246 (335)
                             |...  .....||     .|++.-++++...   ...+++.+.+.|+|||.
T Consensus       147 -------l~~~--~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~  195 (277)
T 3giw_A          147 -------LDAP--ELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSY  195 (277)
T ss_dssp             -------HTCH--HHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCE
T ss_pred             -------hccc--ccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcE
Confidence                   0000  0011233     5788889988665   46899999999999883

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.23  E-value=1.8e-06  Score=83.38  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCc------cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCC
Q 019839          119 FNGIISLELGAG------TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPI  189 (335)
Q Consensus       119 ~~g~~VLELG~G------tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~  189 (335)
                      .++.+|||||||      +|..++.+++.   +++|+++|+++.+.        .+      ..++++...|-.+..-  
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~------~~rI~fv~GDa~dlpf--  278 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD------ELRIRTIQGDQNDAEF--  278 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC------BTTEEEEECCTTCHHH--
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc------CCCcEEEEecccccch--
Confidence            467899999999      77777777654   57999999998762        11      3568888877554200  


Q ss_pred             ccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          190 FSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       190 ~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                     ........++||+|++ |..++.......++.+.++|+|||.
T Consensus       279 ---------------~~~l~~~d~sFDlVis-dgsH~~~d~~~aL~el~rvLKPGGv  319 (419)
T 3sso_A          279 ---------------LDRIARRYGPFDIVID-DGSHINAHVRTSFAALFPHVRPGGL  319 (419)
T ss_dssp             ---------------HHHHHHHHCCEEEEEE-CSCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             ---------------hhhhhcccCCccEEEE-CCcccchhHHHHHHHHHHhcCCCeE
Confidence                           0000011368999997 4556666778889999999999883

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.22  E-value=3.7e-06  Score=85.73  Aligned_cols=130  Identities=15%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             cceeehhHHH--HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC----C--EEEEecCchHHHHHHHHHHHHcc
Q 019839           95 GLQVWKAELV--LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA----W--TVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus        95 G~~vW~aa~~--La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~----~--~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      -....+.|+.  |.+++.++   ....+++.||++|||+|.++..+++.|    .  +|++.+-++ +...+++++..|+
T Consensus       333 Ky~~Ye~AI~~Al~d~~~~~---~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~  408 (637)
T 4gqb_A          333 KYSQYQQAIYKCLLDRVPEE---EKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE  408 (637)
T ss_dssp             HHHHHHHHHHHHHHHHSCGG---GTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhhhc---cccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc
Confidence            3344455554  33443333   245677899999999999966655553    2  689999996 5667788888887


Q ss_pred             CCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE----eccccCcccHHHHHHHHHHhcc
Q 019839          167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA----ADVIYSDDLTDALFHTLKRLMP  242 (335)
Q Consensus       167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla----sDviY~~~~~~~L~~tl~~lL~  242 (335)
                      .    ..+|++...+-.+-.                        ..+++|+||+    +-.+| +... ..+....++|+
T Consensus       409 ~----~dkVtVI~gd~eev~------------------------LPEKVDIIVSEwMG~fLl~-E~ml-evL~Ardr~LK  458 (637)
T 4gqb_A          409 W----GSQVTVVSSDMREWV------------------------APEKADIIVSELLGSFADN-ELSP-ECLDGAQHFLK  458 (637)
T ss_dssp             T----GGGEEEEESCTTTCC------------------------CSSCEEEEECCCCBTTBGG-GCHH-HHHHHHGGGEE
T ss_pred             C----CCeEEEEeCcceecc------------------------CCcccCEEEEEcCcccccc-cCCH-HHHHHHHHhcC
Confidence            5    578999988765542                        3458999996    33333 3444 56788899999


Q ss_pred             CCCcceeeceEEEEEE
Q 019839          243 LGSKKVLVNMVLYLAL  258 (335)
Q Consensus       243 ~~~~~~~~~p~i~ia~  258 (335)
                      |+|..+....++|++-
T Consensus       459 PgGimiPs~atlyiap  474 (637)
T 4gqb_A          459 DDGVSIPGEYTSFLAP  474 (637)
T ss_dssp             EEEEEESCEEEEEEEE
T ss_pred             CCcEEccccceEEEEE
Confidence            9886655555577765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.21  E-value=2e-07  Score=83.91  Aligned_cols=70  Identities=11%  Similarity=0.187  Sum_probs=54.5

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++.+.+..   ...++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++|+..       ..++.+...|+.+.
T Consensus        18 ~~~i~~~~---~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~   87 (245)
T 1yub_A           18 LNQIIKQL---NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQF   87 (245)
T ss_dssp             HHHHHHHC---CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTTT
T ss_pred             HHHHHHhc---CCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChhhc
Confidence            34444443   345778999999999999999999999999999999999888877651       35677777776653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.21  E-value=6.4e-06  Score=77.06  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .+|.+|||+|||+|..++.+|..   ..+|++.|+++.+++.+++|++.++.     .++.+...|+.+.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----~~v~~~~~D~~~~  165 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAV  165 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGS
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCChHhc
Confidence            57889999999999999988875   36999999999999999999999873     4678887776553

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.20  E-value=9.8e-07  Score=73.27  Aligned_cols=61  Identities=21%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             ccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccC-HHHHHHHH-hCCEEEEecCchHHHH
Q 019839           88 TSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSR-VAWTVFLTDHGNYILD  156 (335)
Q Consensus        88 ~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~la~-~~~~V~~TD~~~~~l~  156 (335)
                      ++++-..|.++|+   .|++||..+.     ..+.+|||+|||.| -+++.++. .|..|++||+++..++
T Consensus        11 ~~~~~~~~~~m~e---~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           11 SSGLVPRGSHMWN---DLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCCCCCCCHHHH---HHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             cCCcccchhhHHH---HHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            4555567778866   4999998873     34579999999999 49999997 8999999999975544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.17  E-value=1.3e-05  Score=72.59  Aligned_cols=69  Identities=13%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      +++.|.+..   ...++.+|||+|||+|..+..+++.+ ++|++.|+++.+++.++.|   .      ..++.+...|..
T Consensus        19 i~~~iv~~~---~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~------~~~v~~i~~D~~   86 (249)
T 3ftd_A           19 VLKKIAEEL---NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G------DERLEVINEDAS   86 (249)
T ss_dssp             HHHHHHHHT---TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C------CTTEEEECSCTT
T ss_pred             HHHHHHHhc---CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c------CCCeEEEEcchh
Confidence            345555543   44578899999999999999999995 8999999999999999876   1      246777777765


Q ss_pred             CC
Q 019839          184 NP  185 (335)
Q Consensus       184 ~~  185 (335)
                      +.
T Consensus        87 ~~   88 (249)
T 3ftd_A           87 KF   88 (249)
T ss_dssp             TC
T ss_pred             hC
Confidence            54

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.14  E-value=4.1e-06  Score=78.12  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      -+|.+|||+|||+|..++.+++.  +.+|++.|.++.+++.++.|+..++      .++.+...|+.+
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~d~~~   86 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYRE   86 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGG
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCHHH
Confidence            46889999999999999999987  5799999999999999999998764      357777777654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.13  E-value=1.8e-06  Score=73.04  Aligned_cols=88  Identities=10%  Similarity=-0.026  Sum_probs=64.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .-.|.+||+||||.             | .+|.++.|++.++++...         ++.+...|..+....         
T Consensus        10 ~~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~---------   57 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQS---------   57 (176)
T ss_dssp             CCTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGG---------
T ss_pred             CCCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhccc---------CcEEEEechhcCccc---------
Confidence            35789999999996             2 399999999999877532         245555554332100         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc-ccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD-DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~-~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                 ....++||+|+++.++++. .....+++.+.++|+|||..+
T Consensus        58 -----------~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~   98 (176)
T 2ld4_A           58 -----------AHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLF   98 (176)
T ss_dssp             -----------CCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEE
T ss_pred             -----------cCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEE
Confidence                       0023589999999999987 788999999999999988654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.12  E-value=2.4e-06  Score=79.80  Aligned_cols=50  Identities=18%  Similarity=0.026  Sum_probs=39.1

Q ss_pred             ceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecC
Q 019839           96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDH  150 (335)
Q Consensus        96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~  150 (335)
                      ..+=+++.-|.+.+...    ...+|++|||||||+|..+..+++. ++|++.|+
T Consensus        62 ~~~sR~a~KL~~i~~~~----~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           62 HAVSRGSAKLRWFVERN----LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             CCSSTHHHHHHHHHHTT----SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             CccccHHHHHHHHHHcC----CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            34445777777765542    3346889999999999999999988 58999999

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.11  E-value=6.2e-06  Score=84.38  Aligned_cols=116  Identities=8%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCccCHHHHHH---HHh-C-----------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          120 NGIISLELGAGTGLAGILL---SRV-A-----------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~l---a~~-~-----------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.||++|||+|.++..+   ++. +           .+|++.|.++.+...++.... |+.    ..+|++...+-.+
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~VtVI~gd~ee  483 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRVTIIESDMRS  483 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCSEEEESCGGG
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeEEEEeCchhh
Confidence            3578999999999997543   321 2           299999999876655555444 654    4668887766443


Q ss_pred             CCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc--CcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          185 PWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY--SDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY--~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                      -..+.                  .....+++|+||+==.=|  +.++....+..+.++|+++|..+....++|++-
T Consensus       484 v~lp~------------------~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~~t~ylaP  541 (745)
T 3ua3_A          484 LPGIA------------------KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKP  541 (745)
T ss_dssp             HHHHH------------------HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCEEEEEEEE
T ss_pred             ccccc------------------ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCccEEEEEE
Confidence            21000                  000146899999732222  345666788888999999886654455566664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.04  E-value=1.8e-05  Score=81.99  Aligned_cols=117  Identities=16%  Similarity=0.088  Sum_probs=81.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-----------------------------------------
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-----------------------------------------  142 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~-----------------------------------------  142 (335)
                      .||..|+...   ....+..|||.+||+|.+.|.+|..+                                         
T Consensus       177 ~LAa~ll~~~---~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          177 TLAAAIVMRS---GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             HHHHHHHHHT---TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh---CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            5666666552   33467899999999999999988763                                         


Q ss_pred             ---CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEE
Q 019839          143 ---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLL  219 (335)
Q Consensus       143 ---~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIl  219 (335)
                         .+|+++|+++.+++.++.|+..++.    ...+.+...|..+...+.                     ..+.||+||
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv----~~~i~~~~~D~~~~~~~~---------------------~~~~~d~Iv  308 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGI----GELITFEVKDVAQLTNPL---------------------PKGPYGTVL  308 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEECCGGGCCCSC---------------------TTCCCCEEE
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhCcccc---------------------ccCCCCEEE
Confidence               4799999999999999999999875    245888888776542110                     122799999


Q ss_pred             EeccccC----cccHHHHHHHHHHhcc---CCCcce
Q 019839          220 AADVIYS----DDLTDALFHTLKRLMP---LGSKKV  248 (335)
Q Consensus       220 asDviY~----~~~~~~L~~tl~~lL~---~~~~~~  248 (335)
                      +.-..-.    ......|.+.+.+.++   +|+...
T Consensus       309 ~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~  344 (703)
T 3v97_A          309 SNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS  344 (703)
T ss_dssp             ECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             eCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence            8654322    2244556666665554   455443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.02  E-value=8.2e-06  Score=75.22  Aligned_cols=68  Identities=10%  Similarity=0.080  Sum_probs=53.6

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCE----EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWT----VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~----V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ++.|....   ....+.+|||+|||+|..+..+++.+.+    |++.|+++.+++.++.|.   .      .++.+...|
T Consensus        31 ~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~------~~v~~i~~D   98 (279)
T 3uzu_A           31 IDAIVAAI---RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G------ELLELHAGD   98 (279)
T ss_dssp             HHHHHHHH---CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G------GGEEEEESC
T ss_pred             HHHHHHhc---CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C------CCcEEEECC
Confidence            34444443   3457889999999999999999998777    999999999999999883   1      357777777


Q ss_pred             CCCC
Q 019839          182 WMNP  185 (335)
Q Consensus       182 W~~~  185 (335)
                      ..+.
T Consensus        99 ~~~~  102 (279)
T 3uzu_A           99 ALTF  102 (279)
T ss_dssp             GGGC
T ss_pred             hhcC
Confidence            6654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.92  E-value=0.00015  Score=63.52  Aligned_cols=58  Identities=12%  Similarity=0.054  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      +.++|||+||  |..++.+|+. +.+|+.+|.+++..+.++.|++.++..-  ..++.+...+
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~--~~~I~~~~gd   88 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAE--GTEVNIVWTD   88 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCT--TCEEEEEECC
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--CCceEEEEeC
Confidence            4579999998  5788888887 6899999999999999999999876310  1467777655

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.90  E-value=8.5e-06  Score=73.98  Aligned_cols=68  Identities=10%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCE--EEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWT--VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~--V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      +++.|.+..   ....+.+|||+|||+|..+. +++ +.+  |++.|+++.+++.+++|+..+       .++.+...|.
T Consensus         9 i~~~iv~~~---~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~-------~~v~~i~~D~   76 (252)
T 1qyr_A            9 VIDSIVSAI---NPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG-------PKLTIYQQDA   76 (252)
T ss_dssp             HHHHHHHHH---CCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG-------GGEEEECSCG
T ss_pred             HHHHHHHhc---CCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC-------CceEEEECch
Confidence            444555543   34577899999999998888 665 567  999999999999998876432       3577777776


Q ss_pred             CC
Q 019839          183 MN  184 (335)
Q Consensus       183 ~~  184 (335)
                      .+
T Consensus        77 ~~   78 (252)
T 1qyr_A           77 MT   78 (252)
T ss_dssp             GG
T ss_pred             hh
Confidence            54

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.85  E-value=3.7e-05  Score=77.27  Aligned_cols=119  Identities=12%  Similarity=0.001  Sum_probs=76.2

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--------------------CCEEEEecCchHHHHHHHHHHHH
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--------------------AWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--------------------~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      ++++|....   ....+.+|||.+||+|-..+.+++.                    ..++++.|+++.++..++.|+.+
T Consensus       157 iv~~mv~~l---~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          157 LIKTIIHLL---KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             HHHHHHHHH---CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh---ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            445544443   2346789999999999888887764                    13799999999999999999988


Q ss_pred             ccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--------------cH
Q 019839          165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--------------LT  230 (335)
Q Consensus       165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------------~~  230 (335)
                      ++........+.+...|....                      ......+||+||+.-.+-...              ..
T Consensus       234 ~gi~~~~~~~~~I~~gDtL~~----------------------~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~  291 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLGNTLGS----------------------DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ  291 (541)
T ss_dssp             TTCCCBGGGTBSEEESCTTSH----------------------HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH
T ss_pred             hCCCccccccCCeEeCCCccc----------------------ccccccCCeEEEECCCcccccchhhHhhcCCCCCchH
Confidence            763210000133333332211                      001235899999976543221              12


Q ss_pred             HHHHHHHHHhccCCCcce
Q 019839          231 DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       231 ~~L~~tl~~lL~~~~~~~  248 (335)
                      -.++..+.++|+++|..+
T Consensus       292 ~~Fl~~~l~~Lk~gGr~a  309 (541)
T 2ar0_A          292 LCFMQHIIETLHPGGRAA  309 (541)
T ss_dssp             HHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEE
Confidence            368888889999987654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.84  E-value=2e-05  Score=71.87  Aligned_cols=45  Identities=13%  Similarity=0.139  Sum_probs=40.7

Q ss_pred             CC--CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839          120 NG--IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       120 ~g--~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      .|  .+|||+|||+|..++.+|..|++|++.|.++.+...++.|++.
T Consensus        86 ~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~  132 (258)
T 2oyr_A           86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR  132 (258)
T ss_dssp             TTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence            55  8999999999999999999998999999999988888888754

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.73  E-value=0.00014  Score=75.50  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-----CEEEEecCchHHHHHH--HHHHHHccCCCCCCCeeEEEeccCCCCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNC--AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFS  191 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-----~~V~~TD~~~~~l~~~--~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~  191 (335)
                      ..+.+|||.|||+|...+.+++..     .++++.|+++.+++.+  +.|+..|..... .....+..-++....     
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG-i~~~~I~~dD~L~~~-----  393 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS-NNAPTITGEDVCSLN-----  393 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT-TBCCEEECCCGGGCC-----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC-CCcceEEecchhccc-----
Confidence            467899999999999999988763     3799999999999999  777766543221 111233322222210     


Q ss_pred             CCCCCccccccccCcchhhccCCccEEEEeccccCc-----------------------------ccHHHHHHHHHHhcc
Q 019839          192 LGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-----------------------------DLTDALFHTLKRLMP  242 (335)
Q Consensus       192 ~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-----------------------------~~~~~L~~tl~~lL~  242 (335)
                                       .....+||+||+.-.....                             .....++....++|+
T Consensus       394 -----------------~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLK  456 (878)
T 3s1s_A          394 -----------------PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQ  456 (878)
T ss_dssp             -----------------GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSC
T ss_pred             -----------------ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcC
Confidence                             1124589999997665220                             124557788888999


Q ss_pred             CCCcce
Q 019839          243 LGSKKV  248 (335)
Q Consensus       243 ~~~~~~  248 (335)
                      ++|..+
T Consensus       457 pGGrLA  462 (878)
T 3s1s_A          457 DGTVIS  462 (878)
T ss_dssp             TTCEEE
T ss_pred             CCcEEE
Confidence            988654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.67  E-value=6.7e-05  Score=69.46  Aligned_cols=58  Identities=19%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      .|.+.+....    ..+|..|||++||+|.+++++++.|.+++++|+++.+++.+++|+...
T Consensus       223 ~l~~~~i~~~----~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMF----SFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHH----CCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4555555442    257889999999999999999999999999999999999999998764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.64  E-value=0.00011  Score=68.07  Aligned_cols=99  Identities=11%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCcc------CHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGT------GLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~Gt------GL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +++|+....  ...-+|.+|||||||+      |. .+++.+.+  .+|+++|+++. +                 .++.
T Consensus        50 l~~~l~~~~--l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v-----------------~~v~  108 (290)
T 2xyq_A           50 LCQYLNTLT--LAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V-----------------SDAD  108 (290)
T ss_dssp             HHHHHTTSC--CCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B-----------------CSSS
T ss_pred             HHHHHHHhh--cCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C-----------------CCCE
Confidence            566663111  1345788999999944      65 33333333  69999999976 1                 1244


Q ss_pred             E-EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc--------C---cccHHHHHHHHHHhccCC
Q 019839          177 V-RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY--------S---DDLTDALFHTLKRLMPLG  244 (335)
Q Consensus       177 v-~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY--------~---~~~~~~L~~tl~~lL~~~  244 (335)
                      + ...|+.+..                        ..++||+|++.-...        +   ....+.+++.+.++|++|
T Consensus       109 ~~i~gD~~~~~------------------------~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG  164 (290)
T 2xyq_A          109 STLIGDCATVH------------------------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG  164 (290)
T ss_dssp             EEEESCGGGCC------------------------CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred             EEEECccccCC------------------------ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence            5 666665431                        124799999742110        0   123567899999999998


Q ss_pred             Ccce
Q 019839          245 SKKV  248 (335)
Q Consensus       245 ~~~~  248 (335)
                      |..+
T Consensus       165 G~~v  168 (290)
T 2xyq_A          165 GSIA  168 (290)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.52  E-value=0.001  Score=66.71  Aligned_cols=106  Identities=11%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC-CCCCccC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP-WPPIFSL  192 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~-~~~~~~~  192 (335)
                      ..+.+|+|.+||+|...+.+++.     ..++++.|+++.++..++.|+.+++..   ..++.+...|.... ++.    
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~---~~~~~I~~gDtL~~d~p~----  292 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP---IENQFLHNADTLDEDWPT----  292 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCTTTSCSCC----
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC---cCccceEecceecccccc----
Confidence            46789999999999877777766     468999999999999999999888742   13566666664432 111    


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCc-----------------------ccHHHHHHHHHHhcc-CCCcce
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-----------------------DLTDALFHTLKRLMP-LGSKKV  248 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-----------------------~~~~~L~~tl~~lL~-~~~~~~  248 (335)
                                       ....+||+||+.-.+-..                       ...-+++..+.++|+ ++|..+
T Consensus       293 -----------------~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          293 -----------------QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             -----------------SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             -----------------cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence                             013478999885333110                       011247888889999 888655

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.44  E-value=0.00027  Score=70.98  Aligned_cols=45  Identities=11%  Similarity=0.048  Sum_probs=38.3

Q ss_pred             eEEEEcCccCHHHHHHHHh-----------------CCEEEEecCchHHHHHHHHHHHHccC
Q 019839          123 ISLELGAGTGLAGILLSRV-----------------AWTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus       123 ~VLELG~GtGL~gl~la~~-----------------~~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      +|||.+||+|..-+.+++.                 ..++++.|+++.++..++.|+.+++.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            9999999999777666542                 34899999999999999999998764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.42  E-value=0.0017  Score=60.13  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHH-HccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQ-LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~-~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      +.++||=||-|.|.+.-.+++.  ..+|++.|+++.+++.+++-+. .|..... ..++++...|-......        
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~-dpRv~v~~~Dg~~~l~~--------  153 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYD-DPRFKLVIDDGVNFVNQ--------  153 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG-CTTEEEEESCTTTTTSC--------
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccC-CCcEEEEechHHHHHhh--------
Confidence            4589999999999888888876  4799999999999999987753 3432222 46788887775544211        


Q ss_pred             ccccccccCcchhhccCCccEEEE--eccccCcc--cHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLA--ADVIYSDD--LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~--~~~~L~~tl~~lL~~~~  245 (335)
                                    ..++||+||.  .|......  ....+++.+++.|+++|
T Consensus       154 --------------~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~G  192 (294)
T 3o4f_A          154 --------------TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGG  192 (294)
T ss_dssp             --------------SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEE
T ss_pred             --------------ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCC
Confidence                          2358999996  22222111  34678999999999988

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.32  E-value=0.00016  Score=65.77  Aligned_cols=33  Identities=21%  Similarity=0.129  Sum_probs=26.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-------C-------CEEEEecCch
Q 019839          120 NGIISLELGAGTGLAGILLSRV-------A-------WTVFLTDHGN  152 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-------~-------~~V~~TD~~~  152 (335)
                      ++.+|||+|+|+|+..+++++.       +       .+|+..+..|
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            4569999999999998887653       1       3799999876

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.31  E-value=0.0004  Score=62.87  Aligned_cols=60  Identities=10%  Similarity=0.075  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      ..|.+.+....    ..+|..|||..||+|.+++++++.|.+++++|+++..++.++.|+..|.
T Consensus       199 ~~l~~~~i~~~----~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            34555555542    2578899999999999999999999999999999999999999998765

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.82  E-value=0.0068  Score=55.32  Aligned_cols=57  Identities=18%  Similarity=-0.003  Sum_probs=46.4

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCch
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGN  152 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~  152 (335)
                      ..+|.-+=+||.-|.+.....    ..-.+.+|||||||+|-.+-+++..  ...|++.|++.
T Consensus        50 ~~~~~YrSRaA~KL~ei~ek~----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           50 VDTGVAVSRGTAKLRWFHERG----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             CSSCBCSSTHHHHHHHHHHTT----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             ccCCCccccHHHHHHHHHHhC----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            456888889999999998874    3456779999999999999988865  35788888873

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.79  E-value=0.0015  Score=62.16  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=67.2

Q ss_pred             eehhHHHHHHHHHhhcC----CCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCC
Q 019839           98 VWKAELVLADFVMHKMC----TSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG  173 (335)
Q Consensus        98 vW~aa~~La~~l~~~~~----~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~  173 (335)
                      .=++++-|.+-+.....    ....-+|++||||||++|--+-.+++.|.+|++.|..+ |-.    .+..       .+
T Consensus       185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~~-------~~  252 (375)
T 4auk_A          185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLMD-------TG  252 (375)
T ss_dssp             SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHHT-------TT
T ss_pred             CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhcc-------CC
Confidence            34567777775543210    01235799999999999999999999999999999874 212    2211       24


Q ss_pred             eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCC
Q 019839          174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG  244 (335)
Q Consensus       174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~  244 (335)
                      ++.+...|-....+                       ...++|+|++ |+.-++   ......+.+.+..+
T Consensus       253 ~V~~~~~d~~~~~~-----------------------~~~~~D~vvs-Dm~~~p---~~~~~l~~~wl~~~  296 (375)
T 4auk_A          253 QVTWLREDGFKFRP-----------------------TRSNISWMVC-DMVEKP---AKVAALMAQWLVNG  296 (375)
T ss_dssp             CEEEECSCTTTCCC-----------------------CSSCEEEEEE-CCSSCH---HHHHHHHHHHHHTT
T ss_pred             CeEEEeCccccccC-----------------------CCCCcCEEEE-cCCCCh---HHhHHHHHHHHhcc
Confidence            66766655333211                       1247999987 554443   34455555555543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.71  E-value=0.0064  Score=57.79  Aligned_cols=128  Identities=16%  Similarity=0.015  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCC-CCCeeE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSVH  176 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-~~~~v~  176 (335)
                      .++.+.+..|       ..-+|.+|||+.||.|-=++.+|..+  ..|++.|+++.=++.+++|+...+.... ...++.
T Consensus       135 ~aS~l~~~~L-------~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~  207 (359)
T 4fzv_A          135 AASLLPVLAL-------GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVR  207 (359)
T ss_dssp             GGGHHHHHHH-------CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEE
T ss_pred             HHHHHHHHHh-------CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceE
Confidence            5666666555       33578999999999998777777775  4799999999999999999988754211 124566


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE----ec---cccCc-----------------ccHHH
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA----AD---VIYSD-----------------DLTDA  232 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla----sD---viY~~-----------------~~~~~  232 (335)
                      +...|-....                      ....+.||.||.    |.   .+...                 .....
T Consensus       208 v~~~D~~~~~----------------------~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~  265 (359)
T 4fzv_A          208 VTSWDGRKWG----------------------ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQ  265 (359)
T ss_dssp             EECCCGGGHH----------------------HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHH
T ss_pred             EEeCchhhcc----------------------hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHH
Confidence            6555432210                      012357999986    21   11111                 12345


Q ss_pred             HHHHHHHhccCCCcceeeceEEEEEEeeec
Q 019839          233 LFHTLKRLMPLGSKKVLVNMVLYLALEKRY  262 (335)
Q Consensus       233 L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~  262 (335)
                      ++....+++++||. +     +|..|..-.
T Consensus       266 iL~~a~~~lkpGG~-L-----VYsTCSl~~  289 (359)
T 4fzv_A          266 LLAAGLLATKPGGH-V-----VYSTCSLSH  289 (359)
T ss_dssp             HHHHHHHTEEEEEE-E-----EEEESCCCT
T ss_pred             HHHHHHhcCCCCcE-E-----EEEeCCCch
Confidence            67777788899774 4     788876543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.38  E-value=0.00021  Score=65.66  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=84.2

Q ss_pred             CCcc-ceeehh----HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839           92 PSVG-LQVWKA----ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus        92 ~~~G-~~vW~a----a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      ...| .++|.+    .-.|..|+..-    ..+.+..+||+=+|+|.+|+-+.+.+.++++.|.++..++.+++|++.  
T Consensus        62 ~~~GI~rl~~~~~~~p~~l~~yf~~l----~~~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--  135 (283)
T 2oo3_A           62 YKEGINPVWLDRENLPSLFLEYISVI----KQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--  135 (283)
T ss_dssp             GGGTHHHHHHTGGGSCGGGHHHHHHH----HHHSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHH----HHhcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--
Confidence            3344 477772    23355665443    125778899999999999999999888999999999999999999864  


Q ss_pred             CCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccC-cccHHHHHHHHHHhccCCC
Q 019839          167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~-~~~~~~L~~tl~~lL~~~~  245 (335)
                           ..++++...|-.....                   .......+||+|+. |-=|. ....+.+++.|.+..+..+
T Consensus       136 -----~~~~~V~~~D~~~~L~-------------------~l~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~  190 (283)
T 2oo3_A          136 -----NKKVYVNHTDGVSKLN-------------------ALLPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFS  190 (283)
T ss_dssp             -----TSCEEEECSCHHHHHH-------------------HHCSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCT
T ss_pred             -----CCcEEEEeCcHHHHHH-------------------HhcCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCC
Confidence                 2457777665221100                   00011236999987 66666 4678888888887655433


Q ss_pred             c
Q 019839          246 K  246 (335)
Q Consensus       246 ~  246 (335)
                      .
T Consensus       191 ~  191 (283)
T 2oo3_A          191 T  191 (283)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.24  E-value=0.02  Score=52.60  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-------CCEEEEecCch--------------------------HHHHHHHHHHHHcc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-------AWTVFLTDHGN--------------------------YILDNCAKNVQLNS  166 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-------~~~V~~TD~~~--------------------------~~l~~~~~Nv~~N~  166 (335)
                      ..++|||+|+..|..++.+|..       +.+|++.|..+                          ..++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4569999999999999888754       46899988531                          14677889998766


Q ss_pred             CCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE-eccccCcccHHHHHHHHHHhccCCC
Q 019839          167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA-ADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla-sDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                      ..   ..++.+...+..+..+..                     ..++||+|.. +| .|  ..+...++.+..+|++||
T Consensus       186 l~---~~~I~li~Gda~etL~~~---------------------~~~~~d~vfIDaD-~y--~~~~~~Le~~~p~L~pGG  238 (282)
T 2wk1_A          186 LL---DEQVRFLPGWFKDTLPTA---------------------PIDTLAVLRMDGD-LY--ESTWDTLTNLYPKVSVGG  238 (282)
T ss_dssp             CC---STTEEEEESCHHHHSTTC---------------------CCCCEEEEEECCC-SH--HHHHHHHHHHGGGEEEEE
T ss_pred             CC---cCceEEEEeCHHHHHhhC---------------------CCCCEEEEEEcCC-cc--ccHHHHHHHHHhhcCCCE
Confidence            31   257888887765432211                     1247898876 22 12  223456777888888876

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.75  E-value=0.12  Score=51.59  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---------------CCEEEEecCchHHHHHHHHHHHHccC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---------------AWTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---------------~~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      -++++|.+..   ....|.+|+|-.||+|-.-+.+...               ...+++.|+++.+...++.|+.+++.
T Consensus       204 ~Vv~lmv~l~---~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          204 PVVRFMVEVM---DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             HHHHHHHHHH---CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhh---ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            3455555543   3346789999999999776665543               23699999999999999999988764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.27  E-value=0.045  Score=52.74  Aligned_cols=46  Identities=13%  Similarity=0.060  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHH-Hh-C--CEEEEecCchHHHHHHHHHHHH
Q 019839          119 FNGIISLELGAGTGLAGILLS-RV-A--WTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la-~~-~--~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      -++..|+|+||+.|..++.++ +. +  ++|++.+-+|...+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            367899999999999999887 44 3  6999999999999999999998

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.17  E-value=0.017  Score=55.10  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHH-ccCCCCC--CCeeEEEeccCCCCCCCCccCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQL-NSGVFSH--QGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~--~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      +.++||=||.|.|.+.-.+.+. ..+|++.|+++.+++.+++-+.. +......  ..++++..-|....          
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f----------  274 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----------  274 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----------
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH----------
Confidence            4689999999999888777776 46899999999999999876421 1111110  12344444332111          


Q ss_pred             CccccccccCcchhhccCCccEEEEecccc---C--------cccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIY---S--------DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY---~--------~~~~~~L~~tl~~lL~~~~  245 (335)
                               -....+...+||+||. |+.-   .        .-....+++.+++.|+++|
T Consensus       275 ---------l~~~~~~~~~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~G  325 (381)
T 3c6k_A          275 ---------LKRYAKEGREFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDG  325 (381)
T ss_dssp             ---------HHHHHHHTCCEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEE
T ss_pred             ---------HHhhhhccCceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCC
Confidence                     0000123458999996 3321   1        1124667899999999987

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.16  E-value=0.058  Score=51.41  Aligned_cols=37  Identities=5%  Similarity=-0.080  Sum_probs=29.5

Q ss_pred             cCCccEEEEeccccCcc--------------------------------------cHHHHHHHHHHhccCCCcce
Q 019839          212 VQRASVLLAADVIYSDD--------------------------------------LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       212 ~~~fDlIlasDviY~~~--------------------------------------~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ...+|+|+++-++++-.                                      +...+++...+.|+|||..+
T Consensus       148 ~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mv  222 (374)
T 3b5i_A          148 ARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMF  222 (374)
T ss_dssp             TTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            46899999999999854                                      34457889999999988543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.12  E-value=0.043  Score=51.93  Aligned_cols=55  Identities=9%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+..|||+|.|.|.++..++..  +++|++.+.++.+++.++... .       ..++.+...|.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-------~~~l~ii~~D~  114 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-------GSPLQILKRDP  114 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-------TSSCEEECSCT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-------CCCEEEEECCc
Confidence            4689999999999999888876  679999999999999998765 2       24566666554

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=94.88  E-value=0.038  Score=50.60  Aligned_cols=43  Identities=9%  Similarity=-0.088  Sum_probs=38.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHH
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~  160 (335)
                      .-+|..+||.+||.|--+..+++.+.+|++.|.++.+++.++.
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            3467899999999999999999888899999999999998887

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.48  E-value=0.016  Score=67.78  Aligned_cols=99  Identities=13%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCccCHH-HHHHHHhC------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccC
Q 019839          120 NGIISLELGAGTGLA-GILLSRVA------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       120 ~g~~VLELG~GtGL~-gl~la~~~------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      ...+|||+|+|+|-. .-++...+      .++++||+++...+.++..+..-        .+..  -.|....+..   
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~--~~~d~~~~~~--- 1306 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------HVTQ--GQWDPANPAP--- 1306 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--------TEEE--ECCCSSCCCC---
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--------cccc--cccccccccc---
Confidence            456999999999843 22222222      37899999976665555444320        1111  1222111000   


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       .....||+||++++++-.......++.++++|+|+|..+
T Consensus      1307 -----------------~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~ 1345 (2512)
T 2vz8_A         1307 -----------------GSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLL 1345 (2512)
T ss_dssp             ----------------------CCEEEEECC--------------------CCEEE
T ss_pred             -----------------CCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEE
Confidence                             012369999999999987777788899999999998544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.67  E-value=1.3  Score=41.86  Aligned_cols=108  Identities=19%  Similarity=0.113  Sum_probs=68.0

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCC
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG  173 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~  173 (335)
                      ..+|-|++|-   +||+.+..  ....+.+||-||.+-|.+++.++..+. +..+| +--....++.|++.|+..   ..
T Consensus        17 ~~l~a~da~d---~~ll~~~~--~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~d-s~~~~~~~~~n~~~~~~~---~~   86 (375)
T 4dcm_A           17 NPLQAWEAAD---EYLLQQLD--DTEIRGPVLILNDAFGALSCALAEHKP-YSIGD-SYISELATRENLRLNGID---ES   86 (375)
T ss_dssp             CSCCSCCHHH---HHHHHTTT--TCCCCSCEEEECCSSSHHHHHTGGGCC-EEEES-CHHHHHHHHHHHHHTTCC---GG
T ss_pred             CCCCccchHH---HHHHHhhh--hccCCCCEEEECCCCCHHHHhhccCCc-eEEEh-HHHHHHHHHHHHHHcCCC---cc
Confidence            5789999974   55665531  112557899999999998888875433 33466 334446778999999742   11


Q ss_pred             eeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhcc
Q 019839          174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMP  242 (335)
Q Consensus       174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~  242 (335)
                      .+.  .++..+.                         ....||+|+.    |-+.....+...|.+++.
T Consensus        87 ~~~--~~~~~~~-------------------------~~~~~~~v~~----~lpk~~~~l~~~L~~l~~  124 (375)
T 4dcm_A           87 SVK--FLDSTAD-------------------------YPQQPGVVLI----KVPKTLALLEQQLRALRK  124 (375)
T ss_dssp             GSE--EEETTSC-------------------------CCSSCSEEEE----ECCSCHHHHHHHHHHHHT
T ss_pred             ceE--ecccccc-------------------------cccCCCEEEE----EcCCCHHHHHHHHHHHHh
Confidence            233  2332222                         2347899875    566666666666666654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=93.38  E-value=0.069  Score=49.12  Aligned_cols=61  Identities=16%  Similarity=-0.020  Sum_probs=49.3

Q ss_pred             ccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCch
Q 019839           88 TSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGN  152 (335)
Q Consensus        88 ~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~  152 (335)
                      ......+|..+=+++.-|.+.....    ....+.+||||||++|-.+-+++.. | ..|++.|+..
T Consensus        66 ~~g~~~~g~y~SR~~~KL~ei~~~~----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           66 KEGNVTGGHPVSRGTAKLRWLVERR----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             HHTCCSSCCCSSTHHHHHHHHHHTT----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             hcCcCcCCCccchHHHHHHHHHHhc----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence            3444567889999999999988774    4457789999999999999977766 4 5799999983

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=92.76  E-value=0.24  Score=46.11  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=39.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHH
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv  162 (335)
                      ...+.+||||.||+|-.++.+.+.|. .|++.|+++.+++..+.|.
T Consensus         8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~   53 (327)
T 2c7p_A            8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             ccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc
Confidence            35678999999999999999999886 5788999999999999886

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.74  E-value=0.13  Score=47.78  Aligned_cols=57  Identities=11%  Similarity=0.110  Sum_probs=47.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      .|.+.+....    ..+|..|||-=||+|.+++++.++|.+.+++|+++...+.++.++..
T Consensus       240 ~l~~~~i~~~----~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          240 KLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            4555555442    25788999999999999999999999999999999999988887654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=92.68  E-value=0.14  Score=46.73  Aligned_cols=54  Identities=19%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCch
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGN  152 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~  152 (335)
                      |.-+=+||.-|.+.....    ....+.+|||||||.|--+-+++.. + ..|++.|+..
T Consensus        69 g~YrSRAAfKL~ei~eK~----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~  124 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV  124 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCEecHHHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence            778889999999988764    3457789999999999999988864 3 4789999974

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=92.22  E-value=0.54  Score=44.86  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=24.5

Q ss_pred             CCeEEEEcCccCHHHHHHHHh-------------------CCEEEEecCc
Q 019839          121 GIISLELGAGTGLAGILLSRV-------------------AWTVFLTDHG  151 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~-------------------~~~V~~TD~~  151 (335)
                      ..+|+||||++|-.++.+...                   ..+|++.|+.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            578999999999888776554                   1368899987

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=91.88  E-value=0.24  Score=44.26  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=44.5

Q ss_pred             cceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCch
Q 019839           95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGN  152 (335)
Q Consensus        95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~  152 (335)
                      |.-+=+++.-|.+.....    ....+.+||||||++|--+-+++.. + .+|++.|+..
T Consensus        57 g~yrSRa~~KL~ei~ek~----~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN----MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT----SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             CCccchHHHHHHHHHHhc----CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            777888999998887665    3457889999999999999977766 4 5799999984

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=91.88  E-value=0.2  Score=46.94  Aligned_cols=42  Identities=21%  Similarity=0.094  Sum_probs=37.4

Q ss_pred             CeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHHH
Q 019839          122 IISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      .+||||-||+|-.++.+.+.|   ..|++.|+++.+++..+.|..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            589999999999999999988   369999999999999998863

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=91.51  E-value=0.7  Score=42.58  Aligned_cols=102  Identities=12%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCc----cCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAG----TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~G----tGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      .|+.||-..  +-..-.|.+||+||||    +.=-|.++.+.   |..|++.|+.+-.           .     ... .
T Consensus        95 qlcqyl~~~--~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~-----------s-----da~-~  155 (344)
T 3r24_A           95 QLCQYLNTL--TLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV-----------S-----DAD-S  155 (344)
T ss_dssp             HHHHHHTTS--CCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB-----------C-----SSS-E
T ss_pred             HHHHHhccc--cEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc-----------c-----CCC-e
Confidence            577777332  1234579999999984    22223445544   3589999998511           0     111 2


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEE---------ecccc--CcccHHHHHHHHHHhccCCC
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA---------ADVIY--SDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIla---------sDviY--~~~~~~~L~~tl~~lL~~~~  245 (335)
                      +...|...                        .....+||+||+         .|.--  ...+.+..+....+.|++||
T Consensus       156 ~IqGD~~~------------------------~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGG  211 (344)
T 3r24_A          156 TLIGDCAT------------------------VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGG  211 (344)
T ss_dssp             EEESCGGG------------------------EEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEE
T ss_pred             EEEccccc------------------------cccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCC
Confidence            24444221                        112368999997         11111  23368888999999999988


Q ss_pred             cce
Q 019839          246 KKV  248 (335)
Q Consensus       246 ~~~  248 (335)
                      ..+
T Consensus       212 sFv  214 (344)
T 3r24_A          212 SIA  214 (344)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.46  E-value=0.28  Score=45.52  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCch---HHHHHHHHHHHHc
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGN---YILDNCAKNVQLN  165 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~---~~l~~~~~Nv~~N  165 (335)
                      ...|.+++....    ..+|..|||-=||+|.+++++.++|.+.++.|+++   ...+.++.++...
T Consensus       228 p~~l~~~~i~~~----~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          228 PAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHh----CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            345666666542    25788999999999999999999999999999999   8999888887643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.54  E-value=0.7  Score=42.62  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||=.||| .|+..+.+|+. |++|+++|.+++-++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            45688999999998 48888888876 8899999999877776653

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=89.93  E-value=0.43  Score=43.82  Aligned_cols=57  Identities=18%  Similarity=0.026  Sum_probs=46.8

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCch
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGN  152 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~  152 (335)
                      ..+|.-.=+||+-|.+.....    ...+|++||||||++|-.+-++++. + ..|++.|+..
T Consensus        57 ~~~g~yrSRaa~KL~ei~ek~----l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           57 TDVGISVSRGAAKIRWLHERG----YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             SSSCCCSSTTHHHHHHHHHHT----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             ccCCCccchHHHHHHHHHHhC----CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            356778889999999998773    3458899999999999999999975 3 4788999873

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.58  E-value=0.88  Score=41.71  Aligned_cols=44  Identities=11%  Similarity=-0.003  Sum_probs=37.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCE---EEEecCchHHHHHHHHHH
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWT---VFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~---V~~TD~~~~~l~~~~~Nv  162 (335)
                      -.+.+||||=||.|-.++.+.+.|.+   |.+.|+++.+.+..+.|.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence            45669999999999999999988864   589999998888877764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.57  E-value=1.2  Score=41.63  Aligned_cols=41  Identities=22%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             CCCeEEEEc-Cc-cCHHHHHHHHh--CCEEEEecCchHHHHHHHH
Q 019839          120 NGIISLELG-AG-TGLAGILLSRV--AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       120 ~g~~VLELG-~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~  160 (335)
                      +|.+||=.| +| .|+..+.+|+.  |++|+++|.+++-++.+++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            688999999 56 68888888885  7899999999877776653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=88.87  E-value=0.65  Score=44.08  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             CeEEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHH
Q 019839          122 IISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv  162 (335)
                      .+||||-||+|-.++.+.+.|.+ |.+.|+++.+++..+.|.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~   44 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF   44 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC
Confidence            58999999999999999999875 669999999988888774

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=88.69  E-value=0.28  Score=46.39  Aligned_cols=43  Identities=14%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh------------C------CEEEEecCchHHHHHHHHHH
Q 019839          120 NGIISLELGAGTGLAGILLSRV------------A------WTVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~------------~------~~V~~TD~~~~~l~~~~~Nv  162 (335)
                      +..+|+||||++|-.++.+...            +      .+|++.|+.......+-+++
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L  111 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL  111 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhc
Confidence            3468999999999776654433            1      36888888765555555444

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.57  E-value=0.98  Score=42.71  Aligned_cols=43  Identities=21%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~Gt-GL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-.|.+||-+|||. |+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            446789999999984 8888777775 77 9999999987776654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.22  E-value=0.85  Score=42.20  Aligned_cols=44  Identities=11%  Similarity=0.003  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||=+||| .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            45689999999987 47777777765 7899999999877776653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.85  E-value=1.3  Score=41.42  Aligned_cols=44  Identities=18%  Similarity=0.104  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||-+|+| .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34578999999998 47777777765 7899999999877777653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.73  E-value=1.6  Score=41.16  Aligned_cols=43  Identities=26%  Similarity=0.225  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-.|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK  227 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence            44578999999987 48888888876 66 7999999987777765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.61  E-value=1.5  Score=40.70  Aligned_cols=43  Identities=26%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ...+|.+||-+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  213 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK  213 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            44678999999987 47777777775 76 9999999987776665

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=86.38  E-value=1.2  Score=41.31  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||-+|+| .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            44678999999996 47766667664 8899999998877776654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=86.27  E-value=1.7  Score=40.43  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-.|.+||=+|+| .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH
Confidence            45689999999988 47777777765 8899999999877776643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=86.09  E-value=1.2  Score=41.37  Aligned_cols=42  Identities=17%  Similarity=0.065  Sum_probs=36.7

Q ss_pred             CCeEEEEcCccCHHHHHHHHhC---CEE-EEecCchHHHHHHHHHH
Q 019839          121 GIISLELGAGTGLAGILLSRVA---WTV-FLTDHGNYILDNCAKNV  162 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~~---~~V-~~TD~~~~~l~~~~~Nv  162 (335)
                      ..+|+||-||+|-.++.+.+.|   ..| .+.|+++.+.+..+.|.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~   55 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF   55 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC
Confidence            4589999999999999999887   356 79999999998888886

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=85.88  E-value=2  Score=40.10  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~Gt-GL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ..-.|.+||-+|||. |+..+.+|+. |+ +|+++|.+++-++.++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            446789999999884 7777777775 66 79999999877777653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.52  E-value=2.2  Score=39.20  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      ....|.+||-+|+| .|+..+.+|+. |++|+++|.+++-++.++
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~  205 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK  205 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            34578999999997 56666666654 789999999987777664

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=85.48  E-value=1.8  Score=39.95  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      ...+|.+||-+||| .|+..+.+|+. |++|+++|.+++-++.++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~  209 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK  209 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            34578999999987 46767777764 788999999987777665

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.23  E-value=1.6  Score=40.30  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            45678999999987 47777777776 66 89999999877776654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.09  E-value=3  Score=37.20  Aligned_cols=62  Identities=11%  Similarity=0.070  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||.+|==|++.|+   ++..+|+.|++|+++|.+++-++.+.+.+...+      .++.+...|-.+.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~   68 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSKK   68 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCH
Confidence            4799999999998885   334445559999999999988888877776543      5677777776654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=84.73  E-value=1.3  Score=40.23  Aligned_cols=55  Identities=18%  Similarity=0.010  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      +..-|.+.+..   ...-+|.+||=+||| .|+..+.+|+. |++|++|| +++-++.+++
T Consensus       127 ~~~ta~~al~~---~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          127 PLLTAWQAFEK---IPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             HHHHHHHHHTT---SCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             HHHHHHHHHhh---cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            34444444433   245689999999997 57777777776 88999999 8776666653

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=84.69  E-value=3.4  Score=38.37  Aligned_cols=103  Identities=11%  Similarity=0.117  Sum_probs=63.3

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCC--------CC--------CCCeeEEEeccC
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGV--------FS--------HQGSVHVRDLNW  182 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~--------~~--------~~~~v~v~~ldW  182 (335)
                      .+.|+.||||..-...-+...  +.+++=.|+ |++++.=++-+..+...        ..        ...+.+....|.
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            468999999999777776654  345666666 67776655555544110        00        024566666665


Q ss_pred             CCCCCCCccCCCCCccccccccCcch---hhccCCccEEEEeccccC--cccHHHHHHHHHHhc
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSE---LKEVQRASVLLAADVIYS--DDLTDALFHTLKRLM  241 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~fDlIlasDviY~--~~~~~~L~~tl~~lL  241 (335)
                      .+.                 .|.+..   ........++|+--|+++  ++....|++.+...+
T Consensus       177 ~d~-----------------~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~  223 (334)
T 1rjd_A          177 NDI-----------------TETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF  223 (334)
T ss_dssp             TCH-----------------HHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred             CCc-----------------HHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence            552                 121110   112246788888888866  467888999998887

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=84.51  E-value=2.1  Score=39.89  Aligned_cols=43  Identities=12%  Similarity=0.128  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  233 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence            44678999999987 47777777765 76 8999999987777665

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.15  E-value=9.2  Score=32.54  Aligned_cols=41  Identities=17%  Similarity=0.077  Sum_probs=26.8

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHH
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNC  158 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~  158 (335)
                      ..++|++||=.|+ +|.+|..+++.    |.+|++++.++.-++.+
T Consensus        17 ~~l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~   61 (236)
T 3e8x_A           17 LYFQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPEL   61 (236)
T ss_dssp             ----CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             cCcCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence            4578999999996 45555554443    88999999997655443

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=84.11  E-value=1.8  Score=40.11  Aligned_cols=45  Identities=24%  Similarity=0.176  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCE-EEEecCchHHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWT-VFLTDHGNYILDNCAKN  161 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~-V~~TD~~~~~l~~~~~N  161 (335)
                      ..-+|.+||=+||| .|+..+.+|+. |++ |+++|.+++-++.+++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            45678999999997 47777777776 665 99999998888877753

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=84.08  E-value=1.2  Score=40.04  Aligned_cols=56  Identities=18%  Similarity=0.023  Sum_probs=41.0

Q ss_pred             CCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCc
Q 019839           92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHG  151 (335)
Q Consensus        92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~  151 (335)
                      ..+|.-.=+|+.-|.+.-...    ..-+|.+||||||+.|--+.+++..  ...|.+.++.
T Consensus        49 ~~~g~yRSRAayKL~EIdeK~----likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig  106 (269)
T 2px2_A           49 KVGGHPVSRGTAKLRWLVERR----FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG  106 (269)
T ss_dssp             -CCSCCSSTHHHHHHHHHHTT----SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCC
T ss_pred             CcCCCcccHHHHHHHHHHHcC----CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEc
Confidence            456777788999998876553    3346899999999999999999987  3344444443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.03  E-value=2.3  Score=39.74  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ....|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  237 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK  237 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            44578999999987 57777777765 66 8999999987776664

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=83.42  E-value=2.5  Score=39.39  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-.|.+||-+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  234 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            44578999999987 47777777765 66 8999999987777665

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.31  E-value=1.8  Score=40.54  Aligned_cols=43  Identities=16%  Similarity=0.060  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~  235 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK  235 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            45678999999997 57777777766 66 8999999987777664

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=83.17  E-value=2.6  Score=39.22  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-.|.+||=+|+| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~  232 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK  232 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            44578999999987 46766677765 76 8999999987777765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=82.92  E-value=2.2  Score=35.68  Aligned_cols=43  Identities=16%  Similarity=0.196  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEcC--ccCHHHHHHHH-hCCEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGA--GTGLAGILLSR-VAWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~--GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|++||-.|+  |.|...+.+++ .|++|+++|.+++.++.++
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3457899999995  35655554444 3889999999987665553

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=82.86  E-value=2.8  Score=39.17  Aligned_cols=44  Identities=25%  Similarity=0.241  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ..-.|.+||=+|+| .|+..+.+|+. |+ +|+++|.+++-++.++.
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            45678999999987 47777777765 66 99999999877776654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=82.53  E-value=2.7  Score=39.38  Aligned_cols=42  Identities=26%  Similarity=0.379  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHH
Q 019839          118 DFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCA  159 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~  159 (335)
                      ..+|.+||=+|+| .|+..+.+|+. | ++|+++|.+++-++.++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  237 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE  237 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence            4578999999977 57777777775 7 59999999987777665

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.27  E-value=2.9  Score=38.89  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|.+||-+||| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  233 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK  233 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            44578999999987 47777777765 66 8999999987777664

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=82.22  E-value=3.4  Score=36.44  Aligned_cols=63  Identities=10%  Similarity=0.139  Sum_probs=44.4

Q ss_pred             CCCCCeEEEEcCcc--CH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGT--GL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~Gt--GL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||++|=-|++.  |+   ++..+++.|++|+++|.+++.++.+.+-++.-.     ..++.+...|-.+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-----QPEAHLYQIDVQSD   70 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-----CSSCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcEEEEEccCCCH
Confidence            47999999999632  43   345566679999999999877777766554432     34567777776554

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=82.12  E-value=2.6  Score=38.81  Aligned_cols=43  Identities=19%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcC--ccCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGA--GTGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~--GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      ...+|++||-.|+  |.|+..+.+++. |++|+++|.+++-++.++
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~  211 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR  211 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH
Confidence            4467899999998  467666666654 889999999877666554

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=81.56  E-value=3.1  Score=38.56  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          120 NGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       120 ~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      +|.+||=+|+| .|+..+.+|+. |++|+++|.+++-++.++
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            78999999987 56666666665 789999999876555544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=81.50  E-value=2.5  Score=38.93  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~  159 (335)
                      .. +|.+||-+|+| .|+..+.+|+. |+ +|+++|.+++-++.++
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~  209 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK  209 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            45 89999999996 46666666664 77 8999999987777665

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=81.36  E-value=2  Score=39.91  Aligned_cols=41  Identities=20%  Similarity=0.012  Sum_probs=35.4

Q ss_pred             CeEEEEcCccCHHHHHHHHhC---CEEEEecCchHHHHHHHHHH
Q 019839          122 IISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~---~~V~~TD~~~~~l~~~~~Nv  162 (335)
                      .+|+||-||+|-.++.+.+.|   ..|.+.|+++.+.+..+.|.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~   47 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF   47 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC
Confidence            379999999999999998887   35889999998888888775

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=81.08  E-value=1.8  Score=40.92  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||=+||| .|+..+.+|+. |+ +|+++|.+++-++.+++
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            35678999999987 47777777765 66 99999999877777653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=81.03  E-value=3  Score=37.16  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||++|==|++.|+   ++..+++.|++|+++|.+++.++.+...+...+      .++.....|-.+.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~~   70 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTDE   70 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCH
Confidence            5799999999998874   334455559999999999887777766665543      4566666665543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.48  E-value=7.7  Score=34.39  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             CCCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          116 SSDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      +..++||++|==|++.|+   +...+++.|++|+++|.+..  +....-+...      ..++.....|-.+.
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~------g~~~~~~~~Dv~d~   68 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD------GGNASALLIDFADP   68 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT------TCCEEEEECCTTST
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh------CCcEEEEEccCCCH
Confidence            346899999999999885   33445555999999999842  1222223332      35677777887665

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=80.30  E-value=2.1  Score=39.42  Aligned_cols=43  Identities=26%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHHH
Q 019839          118 DFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~  160 (335)
                      .-.|.+||=+||| .|+..+.+|+.  +.+|+++|.+++-++.+++
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            4578999999997 47777777765  6799999999877777653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=80.24  E-value=2.3  Score=39.03  Aligned_cols=44  Identities=14%  Similarity=0.097  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcCc--cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG--TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G--tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||-.|||  .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            45679999999987  56777666664 8899999999877777654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=80.11  E-value=3.5  Score=37.56  Aligned_cols=44  Identities=16%  Similarity=0.003  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcC-c-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~-G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|++||=.|+ | .|+..+.+|+. |++|+++|.+++-++.++.
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3457899999993 4 67777777765 8899999999877776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.57
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.55
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.49
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.48
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.47
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.42
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.4
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.39
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.39
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.37
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.36
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.35
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.31
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.3
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.3
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.29
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.29
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.27
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.26
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.26
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.22
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.21
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.2
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.2
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.19
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.19
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.17
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.16
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.14
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.13
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.13
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.12
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.1
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.09
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.08
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.07
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.06
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.03
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.02
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.01
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.0
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.0
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.99
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.99
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.96
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.95
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.95
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.95
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.95
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.94
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.93
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.89
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.87
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.87
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.86
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.86
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.82
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.66
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.61
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.6
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.56
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.54
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.44
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.42
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.32
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.27
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.08
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.04
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.97
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.89
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.79
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.78
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.76
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.69
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.68
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.67
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.61
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.58
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.52
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.4
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.35
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.33
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.29
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.23
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.17
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.95
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.92
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.52
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.48
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.09
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.04
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	95.66
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.27
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.72
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.83
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	93.7
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.34
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.1
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.07
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.49
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	91.78
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.44
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.35
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.34
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.19
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.14
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.13
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.12
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.12
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.9
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	90.37
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.05
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.19
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.88
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.66
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.46
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.43
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.03
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.84
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	87.6
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.3
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	87.29
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.28
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	87.14
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.06
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	86.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.72
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.62
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	85.57
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.42
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.27
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.24
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.88
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.83
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.67
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.18
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.95
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.55
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.43
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.27
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	83.24
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	83.12
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	82.78
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.68
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	81.18
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	80.94

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.59  E-value=6e-15  Score=129.42  Aligned_cols=104  Identities=12%  Similarity=-0.004  Sum_probs=90.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..-++.+|||||||+|..++.+++.+++|+++|+++.+++.++.++..++     ..++.+...++.+..-         
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~~l~~---------   77 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQMPF---------   77 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-CCCS---------
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccc-----cccccccccccccccc---------
Confidence            45678999999999999999999999999999999999999999998877     4678888888876421         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|++..++++.+....+++.+.++|+|||..+
T Consensus        78 --------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          78 --------------TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             --------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence                          23589999999999999999999999999999988544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=1.3e-14  Score=125.11  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=94.9

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      .++.++.+|++.+       ...++++|||+|||+|..++.+|+.+.+|+++|+++.+++.+++|++.|+..   ..++.
T Consensus        36 ~~d~~t~lLi~~l-------~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~---~~~i~  105 (194)
T d1dusa_          36 KVDKGTKILVENV-------VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLD---NYDIR  105 (194)
T ss_dssp             SCCHHHHHHHHHC-------CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCT---TSCEE
T ss_pred             CcCHHHHHHHHhC-------CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCc---cceEE
Confidence            3556777776654       4567899999999999999999999999999999999999999999998753   34678


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc-cHHHHHHHHHHhccCCCc
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-~~~~L~~tl~~lL~~~~~  246 (335)
                      +...|+.+..+                        .+.||+|++..++|... ..+.+++.+.++|+++|.
T Consensus       106 ~~~~d~~~~~~------------------------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~  152 (194)
T d1dusa_         106 VVHSDLYENVK------------------------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGE  152 (194)
T ss_dssp             EEECSTTTTCT------------------------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEcchhhhhc------------------------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcE
Confidence            88888765421                        34899999988887754 468899999999999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=5.7e-15  Score=133.00  Aligned_cols=128  Identities=15%  Similarity=0.174  Sum_probs=95.7

Q ss_pred             CceeEEEecccccCCCCccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHH
Q 019839           77 RCFNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILD  156 (335)
Q Consensus        77 ~~~~i~i~~~~~~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~  156 (335)
                      ....|.|.++|+     .|.-.-+.+.++.++|....     .+|++|||+|||+|..++.+++.|.+|+++|+++.+++
T Consensus        87 ~~~~i~i~pg~a-----FGTG~H~TT~l~l~~l~~~~-----~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~  156 (254)
T d2nxca1          87 AEIPLVIEPGMA-----FGTGHHETTRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLP  156 (254)
T ss_dssp             SSEEEECCCC----------CCSHHHHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             cceEEEEccccc-----cCccccchhhHHHHHHHhhc-----CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHH
Confidence            456777777776     33333456778888887653     68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHH
Q 019839          157 NCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHT  236 (335)
Q Consensus       157 ~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~t  236 (335)
                      .+++|++.|+.      ++.+...++.+.                        ...++||+|++.   +.......++..
T Consensus       157 ~A~~na~~n~~------~~~~~~~d~~~~------------------------~~~~~fD~V~an---i~~~~l~~l~~~  203 (254)
T d2nxca1         157 QAEANAKRNGV------RPRFLEGSLEAA------------------------LPFGPFDLLVAN---LYAELHAALAPR  203 (254)
T ss_dssp             HHHHHHHHTTC------CCEEEESCHHHH------------------------GGGCCEEEEEEE---CCHHHHHHHHHH
T ss_pred             HHHHHHHHcCC------ceeEEecccccc------------------------ccccccchhhhc---cccccHHHHHHH
Confidence            99999999974      344555443321                        124589999985   223456778999


Q ss_pred             HHHhccCCCcc
Q 019839          237 LKRLMPLGSKK  247 (335)
Q Consensus       237 l~~lL~~~~~~  247 (335)
                      +.++|+|||..
T Consensus       204 ~~~~LkpGG~l  214 (254)
T d2nxca1         204 YREALVPGGRA  214 (254)
T ss_dssp             HHHHEEEEEEE
T ss_pred             HHHhcCCCcEE
Confidence            99999998853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.5e-14  Score=127.75  Aligned_cols=103  Identities=10%  Similarity=0.004  Sum_probs=89.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..-+|.+|||||||+|..+..+++.+++|+++|+++.+++.+++++..++     ..++.+...|..+..-         
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~-----~~~~~~~~~d~~~~~~---------   78 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-----VENVRFQQGTAESLPF---------   78 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT-----CCSEEEEECBTTBCCS---------
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc-----cccccccccccccccc---------
Confidence            56789999999999999999999999999999999999999999998886     3568888887655311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                    ..++||+|+++.++++.+....+++.+.++|+|+|..
T Consensus        79 --------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~  115 (234)
T d1xxla_          79 --------------PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF  115 (234)
T ss_dssp             --------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEE
T ss_pred             --------------cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEE
Confidence                          2358999999999999999999999999999998843

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6.8e-14  Score=124.42  Aligned_cols=119  Identities=12%  Similarity=-0.020  Sum_probs=98.4

Q ss_pred             ehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 019839           99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV  177 (335)
Q Consensus        99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v  177 (335)
                      ++..--..+.|....   ...+|++|||+|||+|..++.+++. +.+|+++|.++.+++.+++|+..++.    ..++.+
T Consensus        15 ~p~~~~~~~~l~~~~---~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v~~   87 (245)
T d1nkva_          15 NPFTEEKYATLGRVL---RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV----SERVHF   87 (245)
T ss_dssp             SSCCHHHHHHHHHHT---CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEE
T ss_pred             CCCCHHHHHHHHHHc---CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc----cccchh
Confidence            344444555566553   5678999999999999888888875 78999999999999999999988874    356899


Q ss_pred             EeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ...|+.+..+                        .++||+|++..++++....+.+++.+.++|+|||..+
T Consensus        88 ~~~d~~~~~~------------------------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          88 IHNDAAGYVA------------------------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             EESCCTTCCC------------------------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred             hhhHHhhccc------------------------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence            9888876521                        3489999999999999999999999999999998654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=1.7e-13  Score=118.91  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -++.+|||||||+|..++.+|+.+.+|+++|+++.+++.++.++....      ..+.....|..+...           
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~l~~-----------   98 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLSF-----------   98 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCCS-----------
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc------ccccccccccccccc-----------
Confidence            356799999999999999999999999999999999999998876554      234555555544311           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ...+||+|++.+++++.+  ....+++.+.++|+|||..+
T Consensus        99 ------------~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1          99 ------------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             ------------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ------------cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEE
Confidence                        235899999999999854  56779999999999998654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.47  E-value=2.6e-13  Score=123.10  Aligned_cols=105  Identities=13%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..-+|.+|||+|||+|..++.+|+. +.+|+++|+++.+++.++.+....+.    ..++.+...|+.+..-        
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v~~~~~d~~~l~~--------  131 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSFLEIPC--------  131 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCTTSCSS--------
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc----cccccccccccccccc--------
Confidence            4568999999999999999998876 88999999999999999999877654    3578999998876521        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ..++||+|++.+++++.+....+++.+.++|+|||..+
T Consensus       132 ---------------~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~  169 (282)
T d2o57a1         132 ---------------EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  169 (282)
T ss_dssp             ---------------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence                           23589999999999999999999999999999988644

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.42  E-value=1.7e-13  Score=120.38  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=84.4

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .+|+....  ...+++++|||||||+|..+..+++.|.+|+++|.++++++.++.+..         .++.+...++.+.
T Consensus         8 ~~~~~~~~--~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~   76 (225)
T d2p7ia1           8 HPFMVRAF--TPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK---------DGITYIHSRFEDA   76 (225)
T ss_dssp             HHHHHHHH--GGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGC
T ss_pred             HHHHHHHh--hhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc---------ccccccccccccc
Confidence            35555443  244788999999999999999999999999999999999999987632         3466666665543


Q ss_pred             CCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH-HhccCCCc
Q 019839          186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK-RLMPLGSK  246 (335)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~-~lL~~~~~  246 (335)
                      .                        ..++||+|++.++++|.+....++..+. ++|++||.
T Consensus        77 ~------------------------~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~  114 (225)
T d2p7ia1          77 Q------------------------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGR  114 (225)
T ss_dssp             C------------------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEE
T ss_pred             c------------------------cccccccccccceeEecCCHHHHHHHHHHHhcCCCce
Confidence            1                        2358999999999999999999998887 78999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.40  E-value=1.7e-12  Score=111.50  Aligned_cols=102  Identities=14%  Similarity=0.112  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++.+|||||||+|..++.+++.|.+|+++|+++.+++.++.++...+     ..++.+...|+.....          
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~d~~~~~~----------   92 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEG-----LDNLQTDLVDLNTLTF----------   92 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEECCTTTCCC----------
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc-----ccchhhhheecccccc----------
Confidence            3566799999999999999999999999999999999999999988765     3457777777665422          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    .++||+|++..++++.  +....+++.+.++|+++|..+
T Consensus        93 --------------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 --------------DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             --------------CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             --------------cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                          2489999999999985  456789999999999987543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.8e-13  Score=116.15  Aligned_cols=103  Identities=16%  Similarity=0.014  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...+.+|||||||+|..+..++ +.+.+|+++|+++.|++.++.++..++     ..++.+...|..+...         
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~~~~---------  123 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTP---------  123 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCC---------
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc-----cccccccccccccccc---------
Confidence            3567899999999998887765 456799999999999999999987665     3567777777655321         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|++.+++++.+..  ..+++.++++|+++|..+
T Consensus       124 --------------~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~  163 (222)
T d2ex4a1         124 --------------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV  163 (222)
T ss_dssp             --------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEE
Confidence                          23589999999999987554  479999999999988544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=1.2e-12  Score=115.72  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .-++++|||+|||+|..++.+++.|.+|+++|.++.|++.+++|+..++      .++.+...|+.+..           
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~l~-----------  101 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIA-----------  101 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCC-----------
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc------ccchheehhhhhcc-----------
Confidence            3467899999999999999999999999999999999999999988764      35777777765541           


Q ss_pred             cccccccCcchhhccCCccEEEEe-ccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          198 SQERYSWNSSELKEVQRASVLLAA-DVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlas-DviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                   ..++||+|+++ .++++.  +....+++.+.++|+|||..+
T Consensus       102 -------------~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         102 -------------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             -------------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence                         12489999986 566554  456688999999999988554

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.6e-13  Score=119.36  Aligned_cols=94  Identities=22%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||+|||+|..+..+++.|++|+++|+++.+++.++.|...+           +...+..+..            
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~~~~l~------------   97 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKN-----------VVEAKAEDLP------------   97 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSC-----------EEECCTTSCC------------
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccc-----------cccccccccc------------
Confidence            46789999999999999999999999999999999999998763211           1222222210            


Q ss_pred             ccccccCcchhhccCCccEEEE-eccccCcccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLA-ADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIla-sDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                 -..++||+|++ .+++++.+..+.+++.+.++|++||.
T Consensus        98 -----------~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~  135 (246)
T d2avna1          98 -----------FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGL  135 (246)
T ss_dssp             -----------SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEE
T ss_pred             -----------cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcE
Confidence                       02358999998 57898888899999999999999873

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=1.4e-12  Score=111.43  Aligned_cols=101  Identities=13%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...+|.+|||+|||+|..++.+|+.+++|+++|.++.+++.+++|++.|+.    ..++++...|..+.           
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl----~~~v~~~~gda~~~-----------   94 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLMEGDAPEA-----------   94 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEEESCHHHH-----------
T ss_pred             CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCC----CcceEEEECchhhc-----------
Confidence            456899999999999999999999999999999999999999999999875    35788877765432           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ......||+|++.....   ....+++.+.++|+++|..
T Consensus        95 ------------~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          95 ------------LCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             ------------HTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEE
T ss_pred             ------------ccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEE
Confidence                        11235899999876554   3567899999999998854

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.35  E-value=2.8e-12  Score=116.55  Aligned_cols=111  Identities=11%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW  182 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW  182 (335)
                      .+|+....  ....++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.+++|+..+.      .++.+...|.
T Consensus        15 l~~l~~~~--~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~   86 (281)
T d2gh1a1          15 VSFLVNTV--WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDA   86 (281)
T ss_dssp             HHHHHHTT--SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCT
T ss_pred             HHHHHHHH--hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------cccccccccc
Confidence            45565543  23457789999999999999999886   5789999999999999999987654      3677777776


Q ss_pred             CCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .+..                        ..++||+|++..++++.+....+++.+.++|+|||..+
T Consensus        87 ~~~~------------------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~li  128 (281)
T d2gh1a1          87 TEIE------------------------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII  128 (281)
T ss_dssp             TTCC------------------------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEE
T ss_pred             cccc------------------------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEE
Confidence            5431                        12479999999999999999999999999999988544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=5.3e-12  Score=117.10  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=88.8

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .++|++|||||||+|++++.+|+.| ++|++.|.++ ++..+++++..|+.    ..++.+...+..+...         
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~----~~~i~~i~~~~~~l~~---------  101 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF----SDKITLLRGKLEDVHL---------  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCC---------
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc----cccceEEEeehhhccC---------
Confidence            4789999999999999999999997 5899999985 77888999888875    4678888777655421         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccc---cCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVI---YSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDvi---Y~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                    ...+||+|++.-+.   .+....+.++..+.++|+|+|..+....++|++.
T Consensus       102 --------------~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~  152 (328)
T d1g6q1_         102 --------------PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAG  152 (328)
T ss_dssp             --------------SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred             --------------cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeec
Confidence                          23589999995544   4567788899999999999886654455566654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.5e-12  Score=117.06  Aligned_cols=114  Identities=14%  Similarity=0.230  Sum_probs=88.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|++|||||||+|++++.+|+.| ++|++.|.++. ...+++++..|+.    ..++.+...+..+...        
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~----~~~v~~~~~~~~~~~~--------   96 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKL----DHVVTIIKGKVEEVEL--------   96 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTC----TTTEEEEESCTTTCCC--------
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCC----ccccceEeccHHHccc--------
Confidence            35789999999999999999999997 58999999964 5677888888875    4668888777655421        


Q ss_pred             CccccccccCcchhhccCCccEEEEecc---ccCcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADV---IYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDv---iY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                     ...+||+|++.-+   +++....+.++..+.++|+|+|..+....++|++.
T Consensus        97 ---------------~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~  147 (316)
T d1oria_          97 ---------------PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTA  147 (316)
T ss_dssp             ---------------SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred             ---------------ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEE
Confidence                           2358999987433   44567889999999999999987655555566654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.30  E-value=1.2e-11  Score=108.26  Aligned_cols=100  Identities=13%  Similarity=0.116  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      -++.+|||||||+|..++.+++.    +.+|++.|.++.|++.+++++..+..    ..++.+...|..+.         
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~----~~~~~~~~~d~~~~---------  104 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHV---------  104 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC----SSCEEEECSCTTTC---------
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc----cchhhhccchhhcc---------
Confidence            46789999999999999999874    57999999999999999999876553    34555555544332         


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~  247 (335)
                                      ....+|+|+++.++++.  +....+++.+.+.|+|||..
T Consensus       105 ----------------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~l  143 (225)
T d1im8a_         105 ----------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL  143 (225)
T ss_dssp             ----------------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred             ----------------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCcee
Confidence                            13478999999999885  56778999999999998843

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.30  E-value=2.9e-12  Score=106.05  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|++|||||||+|..|+.++..| ++|++.|.++.+++.+++|++.|+.    ..++++...|+....         
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~~ii~~D~~~~l---------   77 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAERAI---------   77 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHHHHH---------
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc----ccchhhhcccccccc---------
Confidence            45799999999999999999888886 5999999999999999999999875    356888777754421         


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH--hccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~--lL~~~~  245 (335)
                                   .....+||+|++ |.-|........+..|..  +|++++
T Consensus        78 -------------~~~~~~fDiIf~-DPPy~~~~~~~~l~~i~~~~~L~~~g  115 (152)
T d2esra1          78 -------------DCLTGRFDLVFL-DPPYAKETIVATIEALAAKNLLSEQV  115 (152)
T ss_dssp             -------------HHBCSCEEEEEE-CCSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -------------cccccccceeEe-chhhccchHHHHHHHHHHCCCcCCCe
Confidence                         112458999988 666776666777776654  355543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.29  E-value=2.6e-12  Score=113.87  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++++|||+|||+|..++.+++.|.+|+++|.++.|++.+++++..++      .++.+...|+.+..            
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~~~~~------------   97 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISNLN------------   97 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGGCC------------
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC------ccceeeccchhhhc------------
Confidence            567899999999999999999999999999999999999999887764      35677776665431            


Q ss_pred             ccccccCcchhhccCCccEEEEe-ccccC---cccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAA-DVIYS---DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlas-DviY~---~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                  ..++||+|++. +++++   .+....+++.+.++|+|||..+
T Consensus        98 ------------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          98 ------------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             ------------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ------------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence                        23489999985 55544   4566778999999999988543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-11  Score=114.03  Aligned_cols=114  Identities=14%  Similarity=0.242  Sum_probs=83.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++|++|||||||+|++++.+|+.| ++|+++|.++.++. +++++..|+.    ..++.+...+-.+...        
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~----~~~i~~~~~~~~~l~~--------   98 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKL----EDTITLIKGKIEEVHL--------   98 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTC----TTTEEEEESCTTTSCC--------
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCC----CccceEEEeeHHHhcC--------
Confidence            56899999999999999999999997 58999999987654 5556656553    4678887776554311        


Q ss_pred             CccccccccCcchhhccCCccEEEEecccc---CcccHHHHHHHHHHhccCCCcceeeceEEEEEE
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIY---SDDLTDALFHTLKRLMPLGSKKVLVNMVLYLAL  258 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY---~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~  258 (335)
                                     ...+||+|++.-+.+   .....+.++....++|+|+|..+....++|++.
T Consensus        99 ---------------~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~  149 (311)
T d2fyta1          99 ---------------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVA  149 (311)
T ss_dssp             ---------------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred             ---------------ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEE
Confidence                           235899999843333   345678889999999999886654444555543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2.5e-11  Score=113.58  Aligned_cols=155  Identities=12%  Similarity=0.099  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      ++..|.+++.+..   ...++.+||||-||+|..|+.+|+.+++|++.|.++.+++.+++|++.|+     ..++.+...
T Consensus       196 ~~e~l~~~v~~~~---~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~  267 (358)
T d1uwva2         196 VNQKMVARALEWL---DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHE  267 (358)
T ss_dssp             HHHHHHHHHHHHH---TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEEC
T ss_pred             hhhHHHHHHHHhh---ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcc-----cccceeeec
Confidence            4666777776654   34567899999999999999999999999999999999999999999999     467777776


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcceeeceEEEEEEee
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEK  260 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~  260 (335)
                      +-.+.....                   .....++|+||.     |++-.. +-+.+..+++.+.+.+     +||||  
T Consensus       268 ~~~~~~~~~-------------------~~~~~~~d~vil-----DPPR~G-~~~~~~~l~~~~~~~i-----vYVSC--  315 (358)
T d1uwva2         268 NLEEDVTKQ-------------------PWAKNGFDKVLL-----DPARAG-AAGVMQQIIKLEPIRI-----VYVSC--  315 (358)
T ss_dssp             CTTSCCSSS-------------------GGGTTCCSEEEE-----CCCTTC-CHHHHHHHHHHCCSEE-----EEEES--
T ss_pred             chhhhhhhh-------------------hhhhccCceEEe-----CCCCcc-HHHHHHHHHHcCCCEE-----EEEeC--
Confidence            544432211                   123457999887     665433 2244555555456777     99998  


Q ss_pred             eccccccchhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCC-CCccccccCC
Q 019839          261 RYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNE-FPQYVREYDR  319 (335)
Q Consensus       261 R~~ft~~~~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~-~pq~~~~yer  319 (335)
                             ++...+.....+..                .||+++++.+.| |||.. |.|-
T Consensus       316 -------np~TlaRDl~~l~~----------------~gy~l~~i~~~D~FP~T~-HvE~  351 (358)
T d1uwva2         316 -------NPATLARDSEALLK----------------AGYTIARLAMLDMFPHTG-HLES  351 (358)
T ss_dssp             -------CHHHHHHHHHHHHH----------------TTCEEEEEEEECCSTTSS-CCEE
T ss_pred             -------CHHHHHHHHHHHHH----------------CCCeEeEEEEEecCCCCc-cEEE
Confidence                   33344333332221                478888885544 99987 5543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.26  E-value=2.3e-11  Score=108.88  Aligned_cols=101  Identities=10%  Similarity=-0.025  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCccCHHHHHHH-HhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la-~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...+.+|||+|||+|..+..++ +.+.+|+++|.++.+++.++++...       ...+++...+..+...         
T Consensus        91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~---------  154 (254)
T d1xtpa_          91 GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATL---------  154 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCC---------
T ss_pred             CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-------cccceeEEcccccccc---------
Confidence            3467899999999998888765 4567999999999999999877542       2456666665544311         


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccH--HHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLT--DALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~--~~L~~tl~~lL~~~~~~~  248 (335)
                                    ..++||+|++..+++|....  ..+++.++++|+++|..+
T Consensus       155 --------------~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~ii  194 (254)
T d1xtpa_         155 --------------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF  194 (254)
T ss_dssp             --------------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             --------------CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEE
Confidence                          23589999999999997554  578999999999988544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=3.8e-11  Score=109.06  Aligned_cols=115  Identities=15%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      |-.-.-+.+++..   ..-+|.+|||+|||.|-+++.+++. |.+|++.|+++..++.+++.+...+.    ...+.+..
T Consensus        36 AQ~~k~~~~~~~l---~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l----~~~~~~~~  108 (280)
T d2fk8a1          36 AQYAKVDLNLDKL---DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLL  108 (280)
T ss_dssp             HHHHHHHHHHTTS---CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEE
T ss_pred             HHHHHHHHHHHHc---CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc----ccchhhhh
Confidence            3344556676664   5668999999999999999888876 89999999999999999998877654    34566665


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .|+.+.                          .++||.|++.+++.+.  ...+.+++.+.++|+|+|..+
T Consensus       109 ~d~~~~--------------------------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~  153 (280)
T d2fk8a1         109 QGWEDF--------------------------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT  153 (280)
T ss_dssp             SCGGGC--------------------------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhhh--------------------------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence            554432                          3489999999999987  456899999999999998654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.24  E-value=1.8e-11  Score=108.97  Aligned_cols=103  Identities=14%  Similarity=0.061  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -+|++|||||||+|.....+++.+ ++|+++|+++.+++.++.+...+..    ..++.+...|......          
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~----------   88 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHM----------   88 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCC----------
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC----CcceEEEEcchhhhcc----------
Confidence            478999999999998888888876 5899999999999999988776543    3578888887654321          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~~  247 (335)
                                  ...+.||+|++..++++.    +....+++.+.++|+|||..
T Consensus        89 ------------~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~  130 (252)
T d1ri5a_          89 ------------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF  130 (252)
T ss_dssp             ------------CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred             ------------cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEE
Confidence                        123589999999999874    45678999999999998843

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.22  E-value=1.9e-10  Score=101.48  Aligned_cols=124  Identities=13%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             ccceeehhHH-HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCC
Q 019839           94 VGLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFS  170 (335)
Q Consensus        94 ~G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~  170 (335)
                      ...++|+.-. -||..|......-..-+|.+|||||||+|.+...+|..+  ..|++.|+++.+++.++.++..+     
T Consensus        47 ~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----  121 (230)
T d1g8sa_          47 EEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----  121 (230)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----
T ss_pred             ceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----
Confidence            4688998743 455555544322245679999999999999999999874  68999999999999998876543     


Q ss_pred             CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                        .++.....+......                      .....+|++++...+++.+....++..++++|+++|.
T Consensus       122 --~ni~~i~~d~~~~~~----------------------~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~  173 (230)
T d1g8sa_         122 --ENIIPILGDANKPQE----------------------YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGY  173 (230)
T ss_dssp             --TTEEEEECCTTCGGG----------------------GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             --cccceEEEeeccCcc----------------------cccccceeEEeeccccchHHHHHHHHHHHHhcccCce
Confidence              344555555443311                      1123567777767788888899999999999999884

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.21  E-value=1.2e-11  Score=104.40  Aligned_cols=109  Identities=10%  Similarity=0.094  Sum_probs=79.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCC-------CCCeeEEEeccCCCCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFS-------HQGSVHVRDLNWMNPWPPI  189 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~-------~~~~v~v~~ldW~~~~~~~  189 (335)
                      ...+|.+|||+|||+|-.++.+|+.|.+|++.|+++.+++.++.++........       ....+.+...++.+..   
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~---   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT---   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST---
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc---
Confidence            456899999999999999999999999999999999999999888743221000       0112233333333321   


Q ss_pred             ccCCCCCccccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcc
Q 019839          190 FSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       190 ~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~  247 (335)
                                         ......||+|+++.++++..  ....+++.+.++|+++|..
T Consensus        94 -------------------~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l  134 (201)
T d1pjza_          94 -------------------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSG  134 (201)
T ss_dssp             -------------------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEE
T ss_pred             -------------------cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEE
Confidence                               12235899999999998753  5678999999999998753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.20  E-value=3e-11  Score=107.75  Aligned_cols=100  Identities=13%  Similarity=0.153  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      -..++|||+|||+|..++.+++.  +.++++.|+ +++++.+++++...+.    ..++.+...|+.+..          
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv~~~~~D~~~~~----------  143 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEPL----------  143 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSCC----------
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc----ccchhhccccchhhc----------
Confidence            34589999999999999999988  468999998 5899999999887654    467888888876542          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcce
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~  248 (335)
                                     ..+||+|+++.++|+.+.  ...+++.+.+.|+|||..+
T Consensus       144 ---------------~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~  182 (253)
T d1tw3a2         144 ---------------PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL  182 (253)
T ss_dssp             ---------------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ---------------ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEE
Confidence                           237999999999988544  4578999999999988654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.2e-10  Score=100.57  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      ..++|++|||||||+|..|+.++..| .+|++.|+++.+++.++.|+..++      .+..+...|
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~------~~~~~~~~d  102 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK------GKFKVFIGD  102 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT------TSEEEEESC
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC------CCceEEECc
Confidence            67899999999999999999999887 489999999999999999988775      345555444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=2.8e-11  Score=102.08  Aligned_cols=111  Identities=19%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM  183 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~  183 (335)
                      .|-.+|.+.     ..+|.+|||+|||+|..|+.++..|++|++.|.++.+++.+++|++.|+..    .++  ...+..
T Consensus        30 ~lf~~l~~~-----~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~----~~v--~~~~~d   98 (171)
T d1ws6a1          30 ALFDYLRLR-----YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG----ARV--VALPVE   98 (171)
T ss_dssp             HHHHHHHHH-----CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC----CEE--ECSCHH
T ss_pred             HHHHHhhcc-----ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc----cce--eeeehh
Confidence            455666554     257899999999999999999999999999999999999999999998742    233  222211


Q ss_pred             CCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHH-HhccCCC
Q 019839          184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK-RLMPLGS  245 (335)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~-~lL~~~~  245 (335)
                      ..                 .+  .......+||+|++ |.=|..+..+.+...+. .+++++|
T Consensus        99 ~~-----------------~~--~~~~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~~~g  141 (171)
T d1ws6a1          99 VF-----------------LP--EAKAQGERFTVAFM-APPYAMDLAALFGELLASGLVEAGG  141 (171)
T ss_dssp             HH-----------------HH--HHHHTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEEEEE
T ss_pred             cc-----------------cc--cccccCCccceeEE-ccccccCHHHHHHHHHHcCCcCCCe
Confidence            10                 00  00113358999987 66677666666555554 3566654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=1.9e-10  Score=104.56  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .|..-+.+++.+..   ..-+|.+|||||||.|-+++.+|+. |.+|++.++++.-++.+++.++..+.    ..++.+.
T Consensus        45 eAQ~~k~~~~~~~l---~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~----~~~v~~~  117 (285)
T d1kpga_          45 EAQIAKIDLALGKL---GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN----LRSKRVL  117 (285)
T ss_dssp             HHHHHHHHHHHTTT---TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEE
T ss_pred             HHHHHHHHHHHHHc---CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh----hhhhHHH
Confidence            45667778888875   6679999999999999999977665 89999999999999999998877654    4678888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..||.+.                          .++||-|++-.++.+.  .....+++.+.++|+|+|..+
T Consensus       118 ~~d~~~~--------------------------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~  163 (285)
T d1kpga_         118 LAGWEQF--------------------------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML  163 (285)
T ss_dssp             ESCGGGC--------------------------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             Hhhhhcc--------------------------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEE
Confidence            8887553                          2489999999999886  456899999999999999765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.4e-11  Score=112.11  Aligned_cols=107  Identities=12%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      ..+++|||||||+|..++.+|+.|.+|++.|+++.||+.++++...+..... .....+...+|.....           
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------  122 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLDK-----------  122 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHHH-----------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc-cceeeeeecccccccc-----------
Confidence            3568999999999999999999999999999999999999999877653211 1234455666643210           


Q ss_pred             ccccccCcchhhccCCccEEEEe-ccccCc-------ccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAA-DVIYSD-------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlas-DviY~~-------~~~~~L~~tl~~lL~~~~~  246 (335)
                               ......+||+|++. +++.+-       +....+++.+.++|+|||.
T Consensus       123 ---------~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  169 (292)
T d1xvaa_         123 ---------DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL  169 (292)
T ss_dssp             ---------HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEE
T ss_pred             ---------ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcE
Confidence                     11123589999875 466542       2466799999999999884

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=3.1e-10  Score=103.45  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHH-hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~-~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      .|-....+++++..   ..-+|.+|||||||.|-+++.+|+ .|.+|++.++++..++.++..+...+.    ..++.+.
T Consensus        44 ~Aq~~k~~~~~~~l---~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l----~~~v~~~  116 (291)
T d1kpia_          44 EAQYAKRKLALDKL---NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVR  116 (291)
T ss_dssp             HHHHHHHHHHHHTT---CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC----SSCEEEE
T ss_pred             HHHHHHHHHHHHhc---CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc----chhhhhh
Confidence            34556677777775   667899999999999999987775 599999999999999999988877654    3567776


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcc---------cHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------LTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~---------~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|+...                          .++||.|++-.++.|..         ..+.+++.+.++|+|||..+
T Consensus       117 ~~d~~~~--------------------------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~  169 (291)
T d1kpia_         117 IQGWEEF--------------------------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML  169 (291)
T ss_dssp             ECCGGGC--------------------------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred             hhccccc--------------------------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence            6664321                          34899999999998753         46899999999999999755

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.14  E-value=9.8e-11  Score=104.54  Aligned_cols=99  Identities=16%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...+|.+|||+|||+|..++.+|+.   ..+|++.|.++++++.+++|++.+..    ..++.+...|..+..+      
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~----~~nv~~~~~Di~~~~~------  151 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFIS------  151 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCCC------
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC----CCceEEEEeeeecccc------
Confidence            5678999999999999999999986   35999999999999999999988653    4678888887765422      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                        ...||.|+.     +......++..+.++|+|||..+
T Consensus       152 ------------------~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv  183 (250)
T d1yb2a1         152 ------------------DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVAT  183 (250)
T ss_dssp             ------------------SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEE
T ss_pred             ------------------cceeeeeee-----cCCchHHHHHHHHHhcCCCceEE
Confidence                              247999985     44555667899999999998655

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.13  E-value=1e-09  Score=95.24  Aligned_cols=123  Identities=14%  Similarity=0.159  Sum_probs=85.3

Q ss_pred             cceeehhHH-HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCCC
Q 019839           95 GLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSH  171 (335)
Q Consensus        95 G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~  171 (335)
                      |.+.|+.-. -||..++... .-..-+|.+|||||||+|.....+|.. + .+|++.|+++.+++.++++++..      
T Consensus        31 ~~r~w~p~rsklaa~i~~g~-~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~------  103 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGH-RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------  103 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSC-CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------
T ss_pred             ceeeeCCcchHHHHHHhccc-cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc------
Confidence            568888532 4455555431 124567999999999999999888876 2 58999999999999999988764      


Q ss_pred             CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                       +++.+...+-......                    ......+|+|+. | +++......+++.+.+.|+++|..
T Consensus       104 -~ni~~i~~d~~~~~~~--------------------~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~LkpgG~l  156 (209)
T d1nt2a_         104 -NNIIPLLFDASKPWKY--------------------SGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEKGEV  156 (209)
T ss_dssp             -SSEEEECSCTTCGGGT--------------------TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEE
T ss_pred             -CCceEEEeeccCcccc--------------------ccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccCCeE
Confidence             3566665554432110                    011235565543 3 666777888999999999998843

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6e-11  Score=104.10  Aligned_cols=121  Identities=7%  Similarity=0.015  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCC-----CC------
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGV-----FS------  170 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~-----~~------  170 (335)
                      ...|.+++.+..   ...+|.+|||+|||+|..++.+|+.|.+|++.|+++.+++.++.+.......     ..      
T Consensus        30 ~~~l~~~~~~~l---~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d2bzga1          30 HQLLKKHLDTFL---KGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK  106 (229)
T ss_dssp             CHHHHHHHHHHH---TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CHHHHHHHHHhc---CCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence            455677776553   3458889999999999999999999999999999999999888765432110     00      


Q ss_pred             -CCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcc
Q 019839          171 -HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       171 -~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~  247 (335)
                       ...++.+...|+.+..                      ......||+|+.+-++++.  +.....++.+.++|+|+|..
T Consensus       107 ~~~~~v~~~~~d~~~l~----------------------~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1         107 SSSGNISLYCCSIFDLP----------------------RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             ETTSSEEEEESCGGGGG----------------------GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             ecCCcEEEEEcchhhcc----------------------ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence             0223444444433321                      1134589999999998875  67788999999999998853

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.4e-10  Score=103.22  Aligned_cols=92  Identities=15%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      -+..|.++.+...    .-++.+|||||||+|..++.+|+.  ..+|+++|+++.+++.+++|++.|+     ..++.+.
T Consensus        93 eTE~lv~~~l~~~----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~-----~~~v~~~  163 (274)
T d2b3ta1          93 DTECLVEQALARL----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHIL  163 (274)
T ss_dssp             THHHHHHHHHHHS----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-----CCSEEEE
T ss_pred             chhhhhhhHhhhh----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC-----cccceee
Confidence            3556777766653    245678999999999999999887  4699999999999999999999987     3468999


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEecccc
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY  225 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY  225 (335)
                      ..||.+..+                        ..+||+|++.-..+
T Consensus       164 ~~d~~~~~~------------------------~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         164 QSDWFSALA------------------------GQQFAMIVSNPPYI  186 (274)
T ss_dssp             CCSTTGGGT------------------------TCCEEEEEECCCCB
T ss_pred             ecccccccC------------------------CCceeEEEecchhh
Confidence            999877522                        24899999975543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6e-11  Score=104.97  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=76.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCC----------C------------
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ----------G------------  173 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~----------~------------  173 (335)
                      ...+|++|||||||+|..++.++..+ .+|+++|+++.+++.+++++..+.......          +            
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            45788999999999998887777664 589999999999999999987665322100          0            


Q ss_pred             eeEEE-eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCcce
Q 019839          174 SVHVR-DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       174 ~v~v~-~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ...+. ...........                 ......+.||+|++..++++.    +....+++.+.++|+|||..+
T Consensus       128 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li  190 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNP-----------------LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV  190 (257)
T ss_dssp             HHHEEEEEECCTTSSST-----------------TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhhhhcccccccccccc-----------------cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEE
Confidence            00000 00000000000                 001134689999999999775    466788999999999988543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.3e-11  Score=106.98  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++|||+|||+|..+..+++. +++|+++|+++.+++.++++.....      .++.+...++......         
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~---------  116 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPT---------  116 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGG---------
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc------cccccccccccccccc---------
Confidence            47889999999999999999987 4789999999999999999876543      4555555554432100         


Q ss_pred             cccccccCcchhhccCCccEEE-----EeccccCcccHHHHHHHHHHhccCCCc
Q 019839          198 SQERYSWNSSELKEVQRASVLL-----AADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIl-----asDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                                  ...++||.|+     +...+++....+.+++.+.++|+|||.
T Consensus       117 ------------~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~  158 (229)
T d1zx0a1         117 ------------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV  158 (229)
T ss_dssp             ------------SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             ------------cccccccceeecccccccccccccCHHHHHHHHHHHcCCCcE
Confidence                        1234788876     466666677788899999999999884

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=6.8e-11  Score=109.25  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .+|++||||+||+|..++.+|+.+++|+++|.++.+++.+++|+++|+.     .++.+...|..+..            
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-----~~~~~i~~d~~~~~------------  206 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLL------------  206 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHH------------
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-----CCcceeeccHHHHh------------
Confidence            5899999999999999999998889999999999999999999999984     45777766644321            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~~  246 (335)
                             .......++||+|+.--..+..         .....|+....++|+|||.
T Consensus       207 -------~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~  256 (318)
T d1wxxa2         207 -------RRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGI  256 (318)
T ss_dssp             -------HHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             -------hhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence                   0011234589999984333221         2244678888899999873

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.07  E-value=7.2e-10  Score=102.16  Aligned_cols=163  Identities=9%  Similarity=0.025  Sum_probs=101.5

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|++||||.||+|..|+.+++.|+ +|+++|.++.+++.+++|+++|+..   ..++.+...|-.+.            
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~---~~~~~~i~~d~~~~------------  207 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDY------------  207 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHH------------
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc---CcceEEEEccHHHH------------
Confidence            5799999999999999999988765 8999999999999999999999853   24566666553221            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---------cccHHHHHHHHHHhccCCCcceeeceEEEEEEeeeccccccc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGSKKVLVNMVLYLALEKRYNFSLND  268 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---------~~~~~~L~~tl~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~  268 (335)
                             -+.......+||+||.--.-+.         ...+..|+....++|+|||. +     ++.++.  ..++   
T Consensus       208 -------l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~-l-----~~~scs--~~~~---  269 (317)
T d2b78a2         208 -------FKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGL-I-----IASTNA--ANMT---  269 (317)
T ss_dssp             -------HHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEE-E-----EEEECC--TTSC---
T ss_pred             -------HHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCE-E-----EEEeCC--ccCC---
Confidence                   0011123458999998322221         11356688889999999772 2     333332  2222   


Q ss_pred             hhhhhhhhhHHHHHHhhhhcccccccccCCCeeeEEecCCCCCccccccCCCCceEEEEE
Q 019839          269 LDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQI  328 (335)
Q Consensus       269 ~d~v~~~~~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~~pq~~~~yer~~~lelw~i  328 (335)
                             .+.|...+...-     ......-..+...+. |||... ++..+.+|...=+
T Consensus       270 -------~~~f~~~v~~a~-----~~~~~~~~~~~~~~~-DfP~~~-~~pe~~YLK~~~~  315 (317)
T d2b78a2         270 -------VSQFKKQIEKGF-----GKQKHTYLDLQQLPS-DFAVNV-QDESSNYLKVFTI  315 (317)
T ss_dssp             -------HHHHHHHHHHHH-----TTCCCEEEEEECCCT-TSCCCT-TCGGGCCCEEEEE
T ss_pred             -------HHHHHHHHHHHH-----HHcCCeEEEeccCCC-CCCCCC-CCCCCCCcEEEEE
Confidence                   334544443221     111011122233344 599887 6777777765543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=6.9e-10  Score=96.53  Aligned_cols=109  Identities=19%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      ..++|..+ +..   ..-+|.+|||+|||+|..+..+|+. +  .+|+++|+++.+++.++.|++.+.     ..++.+.
T Consensus        61 P~~~a~~l-~~l---~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-----~~n~~~~  131 (213)
T d1dl5a1          61 PSLMALFM-EWV---GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFV  131 (213)
T ss_dssp             HHHHHHHH-HHT---TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEE
T ss_pred             chhhHHHH-Hhh---hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-----ccccccc
Confidence            34455544 332   5678999999999999999999986 3  589999999999999999998876     3456555


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      ..|-.+.                       .....+||+|++.-.+++..      +.+.+.|+|||..+
T Consensus       132 ~~d~~~~-----------------------~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv  172 (213)
T d1dl5a1         132 CGDGYYG-----------------------VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVI  172 (213)
T ss_dssp             ESCGGGC-----------------------CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEE
T ss_pred             cCchHHc-----------------------cccccchhhhhhhccHHHhH------HHHHHhcCCCcEEE
Confidence            4432222                       11245799999998887653      24567799988654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.4e-10  Score=101.41  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHH-HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC------------------------
Q 019839          117 SDFNGIISLELGAGTGLAGIL-LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH------------------------  171 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~-la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~------------------------  171 (335)
                      ...+|++|||+|||+|+.++. +++.+.+|+++|+++.+++.+++++.........                        
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            567999999999999977754 4455789999999999999999887543221100                        


Q ss_pred             -CCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc----ccHHHHHHHHHHhccCCCc
Q 019839          172 -QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD----DLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       172 -~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----~~~~~L~~tl~~lL~~~~~  246 (335)
                       .....+...|-....+..                 ......+.||+|+++-|+.+.    +....+++.+.++|+|||.
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~-----------------~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~  193 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLG-----------------AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  193 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTC-----------------SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhhccccccccCCCccc-----------------cCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence             000011111111111100                 001123579999999998664    3567889999999999885


Q ss_pred             ce
Q 019839          247 KV  248 (335)
Q Consensus       247 ~~  248 (335)
                      .+
T Consensus       194 li  195 (263)
T d2g72a1         194 LL  195 (263)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.02  E-value=4.6e-10  Score=102.87  Aligned_cols=108  Identities=13%  Similarity=0.056  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      -+|++||||+||||..|+.+|+.|++|+++|.++.+++.+++|+++|+..   ..++.+...|..+..            
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~~~~l------------  195 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFI------------  195 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHH------------
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCHHHhH------------
Confidence            57899999999999999999999999999999999999999999999853   235666665533220            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccC----------cccHHHHHHHHHHhccCCCcce
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~----------~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                             ........+||+||.----|-          ......|+..+..+++++|..+
T Consensus       196 -------~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l  248 (309)
T d2igta1         196 -------QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL  248 (309)
T ss_dssp             -------HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred             -------HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence                   111223468999997322221          1345778889999999988543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=7.8e-10  Score=99.49  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=76.7

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ...+|.+|||+|||+|..++.+|+.   +.+|++.|.++++++.+++|++.++.    ..++.+..-|-....       
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~----~~~v~~~~~d~~~~~-------  168 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIKVRDISEGF-------  168 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEECCCGGGCC-------
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc----ccCcEEEeccccccc-------
Confidence            5679999999999999999999987   36999999999999999999988763    244555443321110       


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ....||.|+.     +......+++.+.++|+|||..+
T Consensus       169 -----------------~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv  201 (266)
T d1o54a_         169 -----------------DEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFA  201 (266)
T ss_dssp             -----------------SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEE
T ss_pred             -----------------cccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEE
Confidence                             1236787764     66777788999999999998766

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.00  E-value=3.5e-10  Score=97.35  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHH
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      ..+.|++|||||||+|.+|+.+++.| .+|+++|+++.+++.+++|+.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~   92 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG   92 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc
Confidence            56899999999999999999999986 579999999999999998853

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=1e-08  Score=89.88  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             ccceeehhH-HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCC
Q 019839           94 VGLQVWKAE-LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVF  169 (335)
Q Consensus        94 ~G~~vW~aa-~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~  169 (335)
                      ...++|+.- --||..|+.....-..-+|.+|||||||+|.....+|+. |  .+|+++|+++.+++.++.+++..    
T Consensus        46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~----  121 (227)
T d1g8aa_          46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----  121 (227)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----
T ss_pred             eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc----
Confidence            468888761 134444544432224568999999999999999999987 3  69999999999999999887543    


Q ss_pred             CCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCc
Q 019839          170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~  246 (335)
                         .++.....+-....              .+      ......+|+|+. | +++.+..+.+++.+.+.|+++|.
T Consensus       122 ---~~~~~i~~d~~~~~--------------~~------~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~  173 (227)
T d1g8aa_         122 ---RNIVPILGDATKPE--------------EY------RALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGY  173 (227)
T ss_dssp             ---TTEEEEECCTTCGG--------------GG------TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ---CCceEEEEECCCcc--------------cc------cccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCe
Confidence               23333333322210              00      012347888775 4 55667788899999999999883

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=2.9e-10  Score=97.51  Aligned_cols=90  Identities=17%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++.+|||||||+|.....+    ++++++|.++.+++.++++            ++.+...+-.+..            
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~------------   86 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR------------GVFVLKGTAENLP------------   86 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT------------TCEEEECBTTBCC------------
T ss_pred             CCCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc------------ccccccccccccc------------
Confidence            34568999999999766555    3579999999999988753            1344444433221            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 ....+||+|+++.++++.+....+++.+.++|+|||..
T Consensus        87 -----------~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l  124 (208)
T d1vlma_          87 -----------LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL  124 (208)
T ss_dssp             -----------SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred             -----------cccccccccccccccccccccccchhhhhhcCCCCceE
Confidence                       02358999999999999999999999999999998854

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.1e-10  Score=100.12  Aligned_cols=107  Identities=14%  Similarity=0.074  Sum_probs=73.9

Q ss_pred             CeEEEEcCccCHHHHHHHHh--------CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          122 IISLELGAGTGLAGILLSRV--------AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~--------~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      .+|||+|||+|..+..+++.        +.+++++|.++.+++.+++++.......  ...+.+...++.+...      
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~------  113 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE--NVKFAWHKETSSEYQS------  113 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT--TEEEEEECSCHHHHHH------
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc--cccccchhhhhhhhcc------
Confidence            37999999999888776653        2368999999999999999886533110  1122223322211000      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcc
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 .........+||+|+++.++|+.+....+++.+.++|+|+|..
T Consensus       114 -----------~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l  156 (280)
T d1jqea_         114 -----------RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM  156 (280)
T ss_dssp             -----------HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEE
T ss_pred             -----------hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEE
Confidence                       0000113468999999999999999999999999999998843

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=1.1e-09  Score=98.28  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -+|.+|||+|||+|..|+.+|+.| ++|+++|+++.+++.+++|+++|+.    ..++.+...|..+..           
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~-----------  170 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFP-----------  170 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCC-----------
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhc-----------
Confidence            478999999999999999999887 5999999999999999999999986    356888888765542           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                   ....||.|+....-+..    .++....+++++||
T Consensus       171 -------------~~~~~D~Ii~~~p~~~~----~~l~~a~~~l~~gG  201 (260)
T d2frna1         171 -------------GENIADRILMGYVVRTH----EFIPKALSIAKDGA  201 (260)
T ss_dssp             -------------CCSCEEEEEECCCSSGG----GGHHHHHHHEEEEE
T ss_pred             -------------cCCCCCEEEECCCCchH----HHHHHHHhhcCCCC
Confidence                         12479999876544433    35555667788876

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=9e-10  Score=101.78  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhC-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      -+|++|||+|||+|..|+.+|+.| ++|+++|.++.+++.+++|++.|+.    ..++++...|..+.            
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~------------  207 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEE------------  207 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHH------------
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC----Cccceeeechhhhh------------
Confidence            368999999999999999999986 4899999999999999999999985    24666666553221            


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc---------ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD---------DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~---------~~~~~L~~tl~~lL~~~~  245 (335)
                             .........+||+|+.--..+..         .....|+....++|+|||
T Consensus       208 -------~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG  257 (324)
T d2as0a2         208 -------MEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGG  257 (324)
T ss_dssp             -------HHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             -------hHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                   00011234589999973222211         124457777788899987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.3e-09  Score=92.47  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +.+++||||+||+|..|+.++..|+ +|++.|.++.+++.+++|++.+.     ..++.+...|..+...          
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~-----~~~~~ii~~d~~~~l~----------  106 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFLA----------  106 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHHS----------
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc-----ccceeeeeeccccccc----------
Confidence            6889999999999999998888865 89999999999999999998876     3455665544322110          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH--hccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~--lL~~~~  245 (335)
                                  ....+||+|++ |.=|.....+.++..|..  +|++++
T Consensus       107 ------------~~~~~fDlIf~-DPPY~~~~~~~~l~~l~~~~~L~~~~  143 (183)
T d2fpoa1         107 ------------QKGTPHNIVFV-DPPFRRGLLEETINLLEDNGWLADEA  143 (183)
T ss_dssp             ------------SCCCCEEEEEE-CCSSSTTTHHHHHHHHHHTTCEEEEE
T ss_pred             ------------ccccccCEEEE-cCccccchHHHHHHHHHHCCCCCCCe
Confidence                        12358999987 445777777777777766  355543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.8e-09  Score=96.89  Aligned_cols=102  Identities=17%  Similarity=0.102  Sum_probs=78.3

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ..-+|.+|||+|||+|..++.+|+. |  .+|+..|.++++++.+++|++.-....  ..++.+...|-.+...      
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~--~~nv~~~~~d~~~~~~------  164 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP--PDNWRLVVSDLADSEL------  164 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC--CTTEEEECSCGGGCCC------
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC--CceEEEEecccccccc------
Confidence            5578999999999999999999987 3  599999999999999999997642111  3566666665443211      


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                       ....||.|+.     |.+.....+..+.++|+|+|..+
T Consensus       165 -----------------~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv  197 (264)
T d1i9ga_         165 -----------------PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLM  197 (264)
T ss_dssp             -----------------CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEE
T ss_pred             -----------------cCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEE
Confidence                             2358999886     44566678899999999998666

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=2.6e-09  Score=96.17  Aligned_cols=115  Identities=17%  Similarity=0.311  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEec
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL  180 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~l  180 (335)
                      +..|.+++....   ......+|+|+|||+|..++++++. .++|+++|+++.+++.+++|++.|+.    ..++.+...
T Consensus        95 TE~lv~~~~~~~---~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~~i~~~  167 (271)
T d1nv8a_          95 TEELVELALELI---RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKG  167 (271)
T ss_dssp             HHHHHHHHHHHH---HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEES
T ss_pred             hhhhhhhhhhhh---ccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC----CceeEEeec
Confidence            456666666542   1123468999999999999999877 47999999999999999999999875    356788888


Q ss_pred             cCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEe------------ccccCccc--------HHHHHHHHHHh
Q 019839          181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA------------DVIYSDDL--------TDALFHTLKRL  240 (335)
Q Consensus       181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlas------------DviY~~~~--------~~~L~~tl~~l  240 (335)
                      +|.+...                      ...++||+|++.            ++.|.+..        .+.+.+.+.++
T Consensus       168 ~~~~~~~----------------------~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~  225 (271)
T d1nv8a_         168 EFLEPFK----------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY  225 (271)
T ss_dssp             STTGGGG----------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC
T ss_pred             ccccccc----------------------cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHh
Confidence            8876522                      123589999995            33333321        24444557788


Q ss_pred             ccCCC
Q 019839          241 MPLGS  245 (335)
Q Consensus       241 L~~~~  245 (335)
                      |+++|
T Consensus       226 L~~~G  230 (271)
T d1nv8a_         226 DTSGK  230 (271)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            88876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.94  E-value=2.3e-09  Score=93.99  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=76.1

Q ss_pred             HHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCC
Q 019839          108 FVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWP  187 (335)
Q Consensus       108 ~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~  187 (335)
                      ++++.+   ..-+|.+|||+|||+|..+..+|+.+.+|+++|.++.+++.+++|...+       .++.+...|-...++
T Consensus        61 ~ml~~L---~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~-------~nv~~~~~d~~~g~~  130 (224)
T d1vbfa_          61 FMLDEL---DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTLGYE  130 (224)
T ss_dssp             HHHHHT---TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGGCCG
T ss_pred             HHHHHh---hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc-------cccccccCchhhcch
Confidence            344443   5678999999999999999999999999999999999999999886532       467777665333221


Q ss_pred             CCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          188 PIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       188 ~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                             ..++||.|+..-.+.+.  .    ..+.+.|++||+.+
T Consensus       131 -----------------------~~~pfD~Iiv~~a~~~i--p----~~l~~qLk~GGrLV  162 (224)
T d1vbfa_         131 -----------------------EEKPYDRVVVWATAPTL--L----CKPYEQLKEGGIMI  162 (224)
T ss_dssp             -----------------------GGCCEEEEEESSBBSSC--C----HHHHHTEEEEEEEE
T ss_pred             -----------------------hhhhHHHHHhhcchhhh--h----HHHHHhcCCCCEEE
Confidence                                   23589999987766543  2    34557899988654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-09  Score=93.51  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG  193 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~  193 (335)
                      ..-+|.+|||+|||+|..+..+|+.   ..+|++.|+++++++.+++|++.+........++.+...|-...+       
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-------  145 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-------  145 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-------
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-------
Confidence            3457899999999999998888876   359999999999999999999865432110245666655432221       


Q ss_pred             CCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       194 ~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      .....||+|+..-.+.+..      ..+.+.|++||..+
T Consensus       146 ----------------~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV  178 (224)
T d1i1na_         146 ----------------AEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLI  178 (224)
T ss_dssp             ----------------GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEE
T ss_pred             ----------------chhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEE
Confidence                            1345899999988877643      34667899988654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.89  E-value=4.3e-09  Score=93.82  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++|||+|||+|..++.+++.  ..++++.|+ +++++.+++++...+.    ..++.+...|..+..           
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri~~~~~d~~~~~-----------  144 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPL-----------  144 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCC-----------
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC----cceeeeeeeeccccc-----------
Confidence            3478999999999999999988  579999998 6899999999987654    457888887765532           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc--cHHHHHHHHHHhccCCCcceee
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~--~~~~L~~tl~~lL~~~~~~~~~  250 (335)
                                    ...||+|+.+.++|+.+  ....+++.+.+.|+|+|+.+|.
T Consensus       145 --------------p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         145 --------------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             --------------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------------cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence                          23699999999998764  4457899999999999866533

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.87  E-value=8.4e-09  Score=89.71  Aligned_cols=110  Identities=18%  Similarity=0.216  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEe
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD  179 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~  179 (335)
                      +..+.|..+...    ..-+|.+|||+|||+|..+.++|+. +.+|++.|.++++++.+++|+...+     ..++.+..
T Consensus        63 ~P~~~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~  133 (215)
T d1jg1a_          63 APHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG-----VKNVHVIL  133 (215)
T ss_dssp             CHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEE
T ss_pred             hhhhHHHHHHhh----ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC-----CceeEEEE
Confidence            344455544433    5678999999999999999898877 6789999999999999999999876     46788888


Q ss_pred             ccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .|....++                       ...+||.|+..-.+...+  +.    +...|++||+.+
T Consensus       134 gd~~~g~~-----------------------~~~pfD~Iiv~~a~~~ip--~~----l~~qL~~gGrLv  173 (215)
T d1jg1a_         134 GDGSKGFP-----------------------PKAPYDVIIVTAGAPKIP--EP----LIEQLKIGGKLI  173 (215)
T ss_dssp             SCGGGCCG-----------------------GGCCEEEEEECSBBSSCC--HH----HHHTEEEEEEEE
T ss_pred             CccccCCc-----------------------ccCcceeEEeecccccCC--HH----HHHhcCCCCEEE
Confidence            77655432                       346899999987776543  33    445689988654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.87  E-value=1.3e-09  Score=92.59  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..+.|++||||+||+|..|+.++..|+ +|++.|.++.+++.+++|++.++.    ..++.+...|..+...        
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~~i~~~D~~~~l~--------  105 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE----PEKFEVRKMDANRALE--------  105 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHHH--------
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc----ccccccccccchhhhh--------
Confidence            457899999999999999999888865 799999999999999999988764    3467777766433210        


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH--hccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~--lL~~~~  245 (335)
                                 .......+||+|++ |.=|.......++..|..  +|++++
T Consensus       106 -----------~~~~~~~~fDlIfl-DPPY~~~~~~~~l~~i~~~~~L~~~g  145 (182)
T d2fhpa1         106 -----------QFYEEKLQFDLVLL-DPPYAKQEIVSQLEKMLERQLLTNEA  145 (182)
T ss_dssp             -----------HHHHTTCCEEEEEE-CCCGGGCCHHHHHHHHHHTTCEEEEE
T ss_pred             -----------hhcccCCCcceEEe-chhhhhhHHHHHHHHHHHCCCCCCCE
Confidence                       00112348999886 555666666666666644  466544

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=6e-09  Score=93.40  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      ..++.+|||+|||+|..+..+++.  +.+|++.|+++.+++.++++.          .++.+...|..+..         
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~l~---------  142 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLP---------  142 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCS---------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----------ccccceeeehhhcc---------
Confidence            357789999999999999988887  469999999999998887642          34566666554431         


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                    -..+.||+|++..+..+       ++.+.++|+|||..+
T Consensus       143 --------------~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~  174 (268)
T d1p91a_         143 --------------FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVI  174 (268)
T ss_dssp             --------------BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEE
T ss_pred             --------------CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEE
Confidence                          02358999999776654       466899999988543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.8e-09  Score=91.95  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +..+|||||||+|..++.+|+.  +.+|+++|+++++++.+++|++.|+.    ..++.+...+|........       
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l----~~~~~~~~~~~~~~~~~~~-------  129 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDAL-------  129 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTS-------
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC----CcceeeeeeccHHhhhhhh-------
Confidence            4569999999999999998887  68999999999999999999999985    4678888877765422110       


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD  227 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~  227 (335)
                                .....++||+|++.-..|..
T Consensus       130 ----------~~~~~~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         130 ----------KEESEIIYDFCMCNPPFFAN  149 (250)
T ss_dssp             ----------TTCCSCCBSEEEECCCCC--
T ss_pred             ----------hhcccCceeEEEecCccccc
Confidence                      00123589999998888754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.8e-09  Score=95.31  Aligned_cols=106  Identities=14%  Similarity=0.031  Sum_probs=75.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C--CEEEEecCchHHHHHHHHHHHHccCC------CCCCCeeEEEeccCCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGV------FSHQGSVHVRDLNWMNPWP  187 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~--~~V~~TD~~~~~l~~~~~Nv~~N~~~------~~~~~~v~v~~ldW~~~~~  187 (335)
                      ...+|.+|||+|||+|..++.+|+. |  .+|++.|+++++++.+++|++.....      .....++.+...|..+...
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            5678999999999999999999987 3  58999999999999999999753210      0013567777666544311


Q ss_pred             CCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          188 PIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       188 ~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                      .                     .....||.|+. |+    ......+..+.++|+|||..+
T Consensus       175 ~---------------------~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpGG~lv  209 (324)
T d2b25a1         175 D---------------------IKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHGGVCA  209 (324)
T ss_dssp             ---------------------------EEEEEE-CS----SSTTTTHHHHGGGEEEEEEEE
T ss_pred             c---------------------cCCCCcceEee-cC----cCHHHHHHHHHHhccCCCEEE
Confidence            1                     02347998875 43    444457888999999998766

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=1.2e-07  Score=81.45  Aligned_cols=100  Identities=10%  Similarity=0.043  Sum_probs=75.0

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +..|||||||+|-..+.+|+.  ...+++.|+++.++..+..++..++     ..++.+...|-....            
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-----l~Nv~~~~~Da~~l~------------   92 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLT------------   92 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHH------------
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-----ccCchhcccchhhhh------------
Confidence            457999999999999998888  4799999999999999999998877     357888776633210            


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCccc--------HHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--------TDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--------~~~L~~tl~~lL~~~~~  246 (335)
                               +.-....+|.|+..-...++..        ...+++.+.++|+|||.
T Consensus        93 ---------~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~  139 (204)
T d2fcaa1          93 ---------DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGS  139 (204)
T ss_dssp             ---------HHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred             ---------cccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcE
Confidence                     0112357888776544443322        36899999999999883

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=3.6e-08  Score=86.04  Aligned_cols=103  Identities=12%  Similarity=0.160  Sum_probs=73.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhC--------CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVA--------WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPP  188 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~--------~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~  188 (335)
                      ...+|.+|||+|||+|..+.++|+..        .+|++.|.++++++.+++|+..+........++.+...|-.+.++ 
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~-  155 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-  155 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc-
Confidence            34578999999999999988888772        389999999999999999976542110002467777766443321 


Q ss_pred             CccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          189 IFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       189 ~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                            ..++||.|+..-.+.+.+      ..+.+.|++||..+
T Consensus       156 ----------------------~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV  187 (223)
T d1r18a_         156 ----------------------PNAPYNAIHVGAAAPDTP------TELINQLASGGRLI  187 (223)
T ss_dssp             ----------------------GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEE
T ss_pred             ----------------------cccceeeEEEEeechhch------HHHHHhcCCCcEEE
Confidence                                  345899999987776543      24567889988654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=6.9e-08  Score=81.53  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHhCC-EEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc---CCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN---WMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~~~-~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld---W~~~~~~~~~~~~  194 (335)
                      +.|.+||||-||||.+|+.++..|+ +|++.|.+..+++.+++|++..+..   .....+...+   |....        
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~---~~~~~~~~~d~~~~l~~~--------  110 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLKQP--------  110 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTTSC--------
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc---cccccccccccccccccc--------
Confidence            6888999999999999999999975 8999999999999999999876432   1234444433   22211        


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHH--hccCCC
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGS  245 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~--lL~~~~  245 (335)
                                     ....+||+|++ |.=|.......++..|..  +|++++
T Consensus       111 ---------------~~~~~fDlIFl-DPPY~~~~~~~~l~~l~~~~~L~~~~  147 (183)
T d2ifta1         111 ---------------QNQPHFDVVFL-DPPFHFNLAEQAISLLCENNWLKPNA  147 (183)
T ss_dssp             ---------------CSSCCEEEEEE-CCCSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             ---------------ccCCcccEEEe-chhHhhhhHHHHHHHHHHhCCcCCCc
Confidence                           12347999865 677777777777777765  455543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.4e-07  Score=86.89  Aligned_cols=110  Identities=9%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCC----CCCCCeeEEEeccCCCCCCCCc
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGV----FSHQGSVHVRDLNWMNPWPPIF  190 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~----~~~~~~v~v~~ldW~~~~~~~~  190 (335)
                      ..-++.+|||||||+|-+.+.+|+.  +.+|++.|+++.+++.++.++......    .....++.+...|..+..-   
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~---  224 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW---  224 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH---
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc---
Confidence            4567889999999999999988876  358999999999999998876543210    0004578888888665310   


Q ss_pred             cCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          191 SLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       191 ~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                        .......|+|++....|. +.....+..+.+.|+|||+.+
T Consensus       225 ------------------~~~~~~advi~~~~~~f~-~~~~~~l~e~~r~LKpGg~iv  263 (328)
T d1nw3a_         225 ------------------RERIANTSVIFVNNFAFG-PEVDHQLKERFANMKEGGRIV  263 (328)
T ss_dssp             ------------------HHHHHHCSEEEECCTTTC-HHHHHHHHHHHTTCCTTCEEE
T ss_pred             ------------------ccccCcceEEEEcceecc-hHHHHHHHHHHHhCCCCcEEE
Confidence                              001124688888766655 444556778888999988543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.54  E-value=7.1e-07  Score=76.52  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      +..|||||||+|-..+.+|+.  ...+++.|+++.++..+..++..++     ..++.+...|..+...           
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-----l~Ni~~~~~da~~l~~-----------   95 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-----VPNIKLLWVDGSDLTD-----------   95 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----CSSEEEEECCSSCGGG-----------
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-----cccceeeecCHHHHhh-----------
Confidence            347999999999888888887  5789999999999999988888776     4678888887654311           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCcc--------cHHHHHHHHHHhccCCCc
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRLMPLGSK  246 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~~--------~~~~L~~tl~~lL~~~~~  246 (335)
                                .-....+|.|...-.-.++.        ....+++.+.++|++||.
T Consensus        96 ----------~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~  141 (204)
T d1yzha1          96 ----------YFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE  141 (204)
T ss_dssp             ----------TSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred             ----------hccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcE
Confidence                      01234788887532222211        247899999999999883

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=7.2e-07  Score=84.15  Aligned_cols=111  Identities=12%  Similarity=0.116  Sum_probs=72.6

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCC----CCCCeeEE-EeccCCCCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVF----SHQGSVHV-RDLNWMNPWPPI  189 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~----~~~~~v~v-~~ldW~~~~~~~  189 (335)
                      ..-+|.+|||||||+|-+.+.+|+. + ++|++.|+++.+++.++.+++......    ........ ...+..+.    
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~----  288 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN----  288 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC----
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhc----
Confidence            5678899999999999988888876 4 689999999999999999887543100    00111111 11111111    


Q ss_pred             ccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCCcce
Q 019839          190 FSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       190 ~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~~~~  248 (335)
                                      +........+|+|+....+| .+.....+..+.+.|+|||+.+
T Consensus       289 ----------------~~~d~~~~~adVV~inn~~f-~~~l~~~L~ei~r~LKPGGrIV  330 (406)
T d1u2za_         289 ----------------NRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKII  330 (406)
T ss_dssp             ----------------HHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ----------------cccccccccceEEEEecccC-chHHHHHHHHHHHhcCCCcEEE
Confidence                            00011234688999765554 4556667788889999988543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=2.3e-07  Score=80.20  Aligned_cols=113  Identities=14%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR  178 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~  178 (335)
                      +.+|...+..       .+.++|||+|||+|..++.+|+.   +.+|+++|.+++.++.++.|++..+.    ..++++.
T Consensus        45 G~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i~l~  113 (214)
T d2cl5a1          45 GQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKVTIL  113 (214)
T ss_dssp             HHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEE
T ss_pred             HHHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccceee
Confidence            4455555543       36689999999999999999975   57999999999999999999988764    3568888


Q ss_pred             eccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHH--HHHHHHHhccCCC
Q 019839          179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDA--LFHTLKRLMPLGS  245 (335)
Q Consensus       179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~--L~~tl~~lL~~~~  245 (335)
                      ..+..+..+...                 .......||+|+. |  ++.+....  .+....++|++||
T Consensus       114 ~Gd~~e~l~~l~-----------------~~~~~~~~D~ifi-D--~~~~~~~~~~~l~~~~~lLkpGG  162 (214)
T d2cl5a1         114 NGASQDLIPQLK-----------------KKYDVDTLDMVFL-D--HWKDRYLPDTLLLEKCGLLRKGT  162 (214)
T ss_dssp             ESCHHHHGGGHH-----------------HHSCCCCEEEEEE-C--SCGGGHHHHHHHHHHTTCEEEEE
T ss_pred             eccccccccchh-----------------hcccccccceeee-c--ccccccccHHHHHHHhCccCCCc
Confidence            776554321100                 0012357999986 3  22333333  3344456788876

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.3e-07  Score=76.95  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+.++|||+|||+|..++.+|..   +.+|+..|.+++..+.++.|++..+.    ..++.+...+..+..+...     
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~----~~~i~~~~Gda~e~l~~~~-----  128 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLKPALETLDELL-----  128 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHHH-----
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc----cceEEEEEeehhhcchhhh-----
Confidence            57789999999999999999986   46999999999999999999998775    3567777665433211000     


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                  ......+||+|+.-   .+.......++.+.++|++||
T Consensus       129 ------------~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GG  163 (219)
T d2avda1         129 ------------AAGEAGTFDVAVVD---ADKENCSAYYERCLQLLRPGG  163 (219)
T ss_dssp             ------------HTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEEEEE
T ss_pred             ------------hhcccCCccEEEEe---CCHHHHHHHHHHHHHHhcCCc
Confidence                        00123589999982   244566777888889999987

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.27  E-value=3e-06  Score=73.75  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS  195 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~  195 (335)
                      .+.++|||+|+++|..++.+|..   +.+|+.+|.+++..+.+++|++..+.    ..++.+...+..+..+...     
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i~~~~g~a~~~L~~l~-----  128 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGPALPVLDEMI-----  128 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHH-----
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccceeeeehHHHHHHHHHH-----
Confidence            46789999999999999999975   57999999999999999999998765    3568877766543311000     


Q ss_pred             CccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       196 ~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                 .+....++||+|+. |.  +.......++.+..+|++||
T Consensus       129 -----------~~~~~~~~fD~iFi-Da--~k~~y~~~~e~~~~ll~~gG  164 (227)
T d1susa1         129 -----------KDEKNHGSYDFIFV-DA--DKDNYLNYHKRLIDLVKVGG  164 (227)
T ss_dssp             -----------HCGGGTTCBSEEEE-CS--CSTTHHHHHHHHHHHBCTTC
T ss_pred             -----------hccccCCceeEEEe-cc--chhhhHHHHHHHHhhcCCCc
Confidence                       00012358999998 43  44667778888899999987

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=1.1e-05  Score=68.94  Aligned_cols=94  Identities=14%  Similarity=0.010  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      +++++|+|+|+|.|++|+.+|..  ..+|++.|-...=+..++.-+...+     ..++++..-+..+..          
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~~----------  128 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSRVEEFP----------  128 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECCTTTSC----------
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC-----Ccceeeeccchhhhc----------
Confidence            46789999999999999999987  4699999999877777766555544     246777766655431          


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                    ...+||+|++--    ....+.+++....+++++|
T Consensus       129 --------------~~~~fD~V~sRA----~~~~~~ll~~~~~~l~~~g  159 (207)
T d1jsxa_         129 --------------SEPPFDGVISRA----FASLNDMVSWCHHLPGEQG  159 (207)
T ss_dssp             --------------CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEE
T ss_pred             --------------cccccceehhhh----hcCHHHHHHHHHHhcCCCc
Confidence                          124799998742    3457788888899998876

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.04  E-value=1.7e-05  Score=69.48  Aligned_cols=105  Identities=10%  Similarity=0.084  Sum_probs=76.0

Q ss_pred             HHHHHHhhcCCCCCCC-CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEecc
Q 019839          105 LADFVMHKMCTSSDFN-GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN  181 (335)
Q Consensus       105 La~~l~~~~~~~~~~~-g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ld  181 (335)
                      .++-+.+..   ..+. ..+|||+|||+|..++.+++.  ..+++..|+. ++++       ....    ..++.+...|
T Consensus        68 ~~~~l~~~~---~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~~~----~~ri~~~~gd  132 (244)
T d1fp1d2          68 EMKRMLEIY---TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE-------NAPP----LSGIEHVGGD  132 (244)
T ss_dssp             HHHHHHHHC---CTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TCCC----CTTEEEEECC
T ss_pred             HHHHHHHhc---ccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh-------ccCC----CCCeEEecCC
Confidence            344444443   3344 478999999999999999887  5689999985 4432       1111    4678999988


Q ss_pred             CCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCCcceee
Q 019839          182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKVLV  250 (335)
Q Consensus       182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~~~~~~  250 (335)
                      +.+..+                          ..|+|+.+-|+|+.+.  ...+++.+++.|+|+|+.+|.
T Consensus       133 ~~~~~p--------------------------~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         133 MFASVP--------------------------QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             TTTCCC--------------------------CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc--------------------------cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            875422                          4599999999988654  557899999999998865533

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.97  E-value=9.3e-05  Score=66.96  Aligned_cols=135  Identities=8%  Similarity=0.028  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-------CCEEEEecCchHHHHHHHHHHHHccCCCCCCCee
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-------AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV  175 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~-------~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v  175 (335)
                      .+|++.+....   ..-.+.+|||.|||+|...+.+...       ..++++.|+++.++..++.|...+..      ..
T Consensus       103 ~~m~~l~~~~~---~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~------~~  173 (328)
T d2f8la1         103 FIVAYLLEKVI---QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ------KM  173 (328)
T ss_dssp             HHHHHHHHHHH---TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC------CC
T ss_pred             HHHHHHHHHHh---CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh------hh
Confidence            34555544332   2346679999999999887777643       13799999999999999999988763      34


Q ss_pred             EEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc------------------ccHHHHHHHH
Q 019839          176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD------------------DLTDALFHTL  237 (335)
Q Consensus       176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------------------~~~~~L~~tl  237 (335)
                      .....++....                        ...+||+||+.-.+-..                  ...-.++...
T Consensus       174 ~~~~~d~~~~~------------------------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~  229 (328)
T d2f8la1         174 TLLHQDGLANL------------------------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQG  229 (328)
T ss_dssp             EEEESCTTSCC------------------------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHH
T ss_pred             hhhcccccccc------------------------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHH
Confidence            44454543321                        13489999997664211                  1244578888


Q ss_pred             HHhccCCCcceeeceEEEEEEeeeccccccchhhhhhhhhHHHHHHhh
Q 019839          238 KRLMPLGSKKVLVNMVLYLALEKRYNFSLNDLDVVANGYSHFRSYIME  285 (335)
Q Consensus       238 ~~lL~~~~~~~~~~p~i~ia~~~R~~ft~~~~d~v~~~~~~f~~~l~~  285 (335)
                      .++|+++|..+     +++..  . -       .....+..+|+++.+
T Consensus       230 ~~~Lk~~G~~~-----~I~p~--~-~-------l~~~~~~~lR~~L~~  262 (328)
T d2f8la1         230 MRYTKPGGYLF-----FLVPD--A-M-------FGTSDFAKVDKFIKK  262 (328)
T ss_dssp             HHTEEEEEEEE-----EEEEG--G-G-------GGSTTHHHHHHHHHH
T ss_pred             HHhcCCCCceE-----EEecC--c-c-------ccCchhHHHHHHHHh
Confidence            89999988654     33331  1 1       112456778888864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.89  E-value=2.1e-05  Score=68.54  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=54.7

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++.|....   ..-++.+|||+|||+|.+...+++.+++|++.|+++.+++.++.+...       ..++.+...|..+.
T Consensus        10 ~~~iv~~~---~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l~~   79 (235)
T d1qama_          10 IDKIMTNI---RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHTTC---CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGC
T ss_pred             HHHHHHhc---CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhhhc
Confidence            34444442   446899999999999999999999999999999999999998876532       35677777765543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.79  E-value=3.8e-05  Score=67.19  Aligned_cols=86  Identities=13%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             CeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccc
Q 019839          122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ  199 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~  199 (335)
                      ++|||+|+|+|..++.+++.  ..+++..|.. ++++.+       ..    ..++++...|+.+..             
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~----~~rv~~~~gD~f~~~-------------  136 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-------SG----SNNLTYVGGDMFTSI-------------  136 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-------CC----BTTEEEEECCTTTCC-------------
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-------cc----cCceEEEecCcccCC-------------
Confidence            68999999999999998887  5799999995 454321       11    467999999877642             


Q ss_pred             cccccCcchhhccCCccEEEEeccccCccc--HHHHHHHHHHhccCCC
Q 019839          200 ERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGS  245 (335)
Q Consensus       200 ~~~~w~~~~~~~~~~fDlIlasDviY~~~~--~~~L~~tl~~lL~~~~  245 (335)
                                   ..+|+++.+.|+|+.+.  ...+++.+++.|++++
T Consensus       137 -------------p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg  171 (244)
T d1fp2a2         137 -------------PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDG  171 (244)
T ss_dssp             -------------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGG
T ss_pred             -------------CCCcEEEEEeecccCChHHHHHHHHHHHHHcCccc
Confidence                         25799999999988654  4578999999999974

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.2e-05  Score=67.57  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             HHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      +++.|.+..   ..-++..|||+|+|+|.+...+++.+++|++.++++.+++.++.++..+..    ..++.+...|+.+
T Consensus         9 i~~kIv~~~---~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~----~~~~~~i~~D~l~   81 (278)
T d1zq9a1           9 IINSIIDKA---ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV----ASKLQVLVGDVLK   81 (278)
T ss_dssp             HHHHHHHHT---CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEESCTTT
T ss_pred             HHHHHHHHh---CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhcc----ccchhhhHHHHhh
Confidence            344455542   445788999999999999999999999999999999999999988765432    3678888888876


Q ss_pred             C
Q 019839          185 P  185 (335)
Q Consensus       185 ~  185 (335)
                      .
T Consensus        82 ~   82 (278)
T d1zq9a1          82 T   82 (278)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=2e-05  Score=71.52  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHH-ccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ..++||.||.|.|.+...+.+.  ..+|++.|+++.+++.+++.+.. |..... ..++++...|+.+..          
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~-d~rv~i~~~Da~~~l----------  145 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD-DPRAVLVIDDARAYL----------  145 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG-CTTEEEEESCHHHHH----------
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccC-CCceEEEEchHHHHh----------
Confidence            4689999999999888777766  36999999999999999988743 322221 467777776655431          


Q ss_pred             ccccccccCcchhhccCCccEEEE--eccccCcc-----cHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLA--ADVIYSDD-----LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIla--sDviY~~~-----~~~~L~~tl~~lL~~~~  245 (335)
                                  .....+||+||.  .|......     .+..+++.+++.|+++|
T Consensus       146 ------------~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~G  189 (312)
T d1uira_         146 ------------ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGG  189 (312)
T ss_dssp             ------------HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEE
T ss_pred             ------------hhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCc
Confidence                        112358999993  33333221     24678999999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.69  E-value=0.00016  Score=62.88  Aligned_cols=93  Identities=11%  Similarity=0.062  Sum_probs=69.2

Q ss_pred             CCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCcc
Q 019839          121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS  198 (335)
Q Consensus       121 g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~  198 (335)
                      .++|||+|||+|..++.+++.  ..+++..|+.+ +++       ....    ..++.....|+.+..|           
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~----~~r~~~~~~d~~~~~P-----------  138 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPS----YPGVEHVGGDMFVSIP-----------  138 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCC----CTTEEEEECCTTTCCC-----------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hccc----CCceEEecccccccCC-----------
Confidence            468999999999999999988  57999999963 321       1111    4678888888876532           


Q ss_pred             ccccccCcchhhccCCccEEEEeccccCc--ccHHHHHHHHHHhccCCCcceeec
Q 019839          199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLVN  251 (335)
Q Consensus       199 ~~~~~w~~~~~~~~~~fDlIlasDviY~~--~~~~~L~~tl~~lL~~~~~~~~~~  251 (335)
                                     ..|+++.+-++++.  +....+++.+.+.|+++++.++.+
T Consensus       139 ---------------~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         139 ---------------KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             ---------------CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             ---------------CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence                           34666777788775  456778999999999998766433

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=5.1e-05  Score=70.49  Aligned_cols=101  Identities=17%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCCC----------CCeeEEEeccCCCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSH----------QGSVHVRDLNWMNPW  186 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~----------~~~v~v~~ldW~~~~  186 (335)
                      +++++|||..||+|+-||-.|+. + .+|++.|+++.+++.+++|+++|+.....          ...+.+...|+... 
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~-  122 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL-  122 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH-
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh-
Confidence            57889999999999999987774 3 58999999999999999999999743210          11223333332111 


Q ss_pred             CCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          187 PPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       187 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                           .......||+|.. |.   .....++++..-+.++.+|
T Consensus       123 ---------------------~~~~~~~fDvIDi-DP---fGs~~pfldsAi~a~~~~G  156 (375)
T d2dula1         123 ---------------------MAERHRYFHFIDL-DP---FGSPMEFLDTALRSAKRRG  156 (375)
T ss_dssp             ---------------------HHHSTTCEEEEEE-CC---SSCCHHHHHHHHHHEEEEE
T ss_pred             ---------------------hHhhcCcCCcccC-CC---CCCcHHHHHHHHHHhccCC
Confidence                                 0112347998876 22   2345678888888888765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.67  E-value=2.5e-05  Score=65.83  Aligned_cols=34  Identities=6%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             cCCccEEEEeccccC--cccHHHHHHHHHHhccCCC
Q 019839          212 VQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       212 ~~~fDlIlasDviY~--~~~~~~L~~tl~~lL~~~~  245 (335)
                      .++||+|+|..|+.+  ++....+++.+.+.|+|||
T Consensus       130 ~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG  165 (193)
T d1af7a2         130 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG  165 (193)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCc
Confidence            468999999999854  4566889999999999987

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.61  E-value=6.4e-05  Score=66.90  Aligned_cols=103  Identities=10%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCC-----CCCCeeEEEeccCCCCCCCCccC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVF-----SHQGSVHVRDLNWMNPWPPIFSL  192 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~-----~~~~~v~v~~ldW~~~~~~~~~~  192 (335)
                      -+.++||-||.|.|.+...+.+. ..+|++.|+++.+++.++.-...+....     ....++++...|....       
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-------  143 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-------  143 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-------
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-------
Confidence            35689999999999888777766 3589999999999999987554332110     0135666665543221       


Q ss_pred             CCCCccccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCC
Q 019839          193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       193 ~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~  245 (335)
                                      +...++||+||. |+.....     ....+++.+++.|+++|
T Consensus       144 ----------------l~~~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~G  184 (276)
T d1mjfa_         144 ----------------IKNNRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPG  184 (276)
T ss_dssp             ----------------HHHCCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEE
T ss_pred             ----------------HhccCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCc
Confidence                            123468999995 5543221     13678999999999988

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.58  E-value=8.2e-05  Score=64.77  Aligned_cols=97  Identities=11%  Similarity=-0.027  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+.+|+|+|+|.|++||.+|..  ..+|++.|-...=...++.-+..-+     ..++.+..-...+....         
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~-----L~n~~i~~~R~E~~~~~---------  135 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-----LENTTFCHDRAETFGQR---------  135 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-----CSSEEEEESCHHHHTTC---------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC-----CCCcEEEeehhhhcccc---------
Confidence            5679999999999999999986  5799999999765555554443333     23445443322111000         


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                                 ....++||+|+|-    -......++.....+++++|
T Consensus       136 -----------~~~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g  168 (239)
T d1xdza_         136 -----------KDVRESYDIVTAR----AVARLSVLSELCLPLVKKNG  168 (239)
T ss_dssp             -----------TTTTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEE
T ss_pred             -----------ccccccceEEEEh----hhhCHHHHHHHHhhhcccCC
Confidence                       0123589999995    34567788999999999876

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.52  E-value=8.4e-06  Score=71.60  Aligned_cols=62  Identities=13%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..-.+.+|||+|||+|.++..+++.+++|++.|+++.+++.++.+...       ..++.+...|..+.
T Consensus        26 ~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D~l~~   87 (245)
T d1yuba_          26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQF   87 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTTT
T ss_pred             CCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh-------ccchhhhhhhhhcc
Confidence            345778999999999988889999999999999998877766544321       35777777776654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00011  Score=65.94  Aligned_cols=102  Identities=14%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++||-||.|.|.+.-.+.+.  ..+|++.|+++.+++.+++-...|..... ..++++...|......          
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~-d~rv~v~~~Da~~~l~----------  157 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD-DPRAEIVIANGAEYVR----------  157 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG-CTTEEEEESCHHHHGG----------
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhccccc-CCCcEEEhhhHHHHHh----------
Confidence            4589999999999887777776  36899999999999999987766542222 4567776665433210          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccC---c---ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYS---D---DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~---~---~~~~~L~~tl~~lL~~~~  245 (335)
                                  ...++||+||. |+.-.   +   =....+++.+++.|+++|
T Consensus       158 ------------~~~~~yDvIi~-D~~dp~~~~~~~L~t~efy~~~~~~L~~~G  198 (295)
T d1inla_         158 ------------KFKNEFDVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDG  198 (295)
T ss_dssp             ------------GCSSCEEEEEE-EC----------CCSHHHHHHHHHHEEEEE
T ss_pred             ------------cCCCCCCEEEE-cCCCCCcCchhhhccHHHHHHHHhhcCCCc
Confidence                        12358999995 33221   1   125789999999999987

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.35  E-value=0.0002  Score=60.40  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHH
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYIL  155 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l  155 (335)
                      -++++|....   ..-+|.+|||.|||+|-..+.+...   ...+++.|+++..+
T Consensus         6 ~i~~~m~~l~---~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           6 EVVDFMVSLA---EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHHHHC---CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHHHHhc---CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            3567777664   3457889999999999765555543   46899999997543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=9e-05  Score=65.06  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             HHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      ++.|....   ....+..|||+|||+|.+.-.+++.+++|++.|+++.+++.++.....       ..++.+...|..+
T Consensus        10 ~~~Iv~~~---~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAI---NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHH---CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGGG
T ss_pred             HHHHHHhc---CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh-------ccchhHHhhhhhh
Confidence            34444443   345688999999999999999999999999999999999998764322       2467777766554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.29  E-value=0.00035  Score=61.91  Aligned_cols=103  Identities=14%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++||-||-|.|.+.-.+.+.  ..+|++.|+++.+++.+++....|..... ..++.+...|.....           
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~-d~r~~i~~~D~~~~l-----------  142 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD-DPRVDVQVDDGFMHI-----------  142 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT-STTEEEEESCSHHHH-----------
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccccc-CCCeEEEechHHHHH-----------
Confidence            4579999999999988888876  46999999999999999988766553332 466777665533220           


Q ss_pred             cccccccCcchhhccCCccEEEEe--ccccCcc--cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAA--DVIYSDD--LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlas--DviY~~~--~~~~L~~tl~~lL~~~~  245 (335)
                                 .....+||+||.-  |-.....  ....+++.+++.|+++|
T Consensus       143 -----------~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~G  183 (274)
T d1iy9a_         143 -----------AKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDG  183 (274)
T ss_dssp             -----------HTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEE
T ss_pred             -----------hhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCc
Confidence                       0123589999862  1111111  26778999999999987

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00039  Score=61.91  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++||-||-|.|.+.-.+.+.  ..+|++.|+++.+++.+++-...|..... ..++++...|.....           
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~-d~rv~i~~~Da~~~l-----------  145 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS-SSKLTLHVGDGFEFM-----------  145 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-CTTEEEEESCHHHHH-----------
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccC-CCCceEEEccHHHHH-----------
Confidence            5589999999999888888876  46999999999999999887655432222 466777665532210           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcc-----cHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~-----~~~~L~~tl~~lL~~~~  245 (335)
                                 ....++||+||. |+.-...     .+..+++.+++.|+++|
T Consensus       146 -----------~~~~~~yDvIi~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~G  186 (285)
T d2o07a1         146 -----------KQNQDAFDVIIT-DSSDPMGPAESLFKESYYQLMKTALKEDG  186 (285)
T ss_dssp             -----------HTCSSCEEEEEE-ECC-----------CHHHHHHHHHEEEEE
T ss_pred             -----------hcCCCCCCEEEE-cCCCCCCcccccccHHHHHHHHHhcCCCC
Confidence                       012358999997 5432211     24457899999999987

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.00036  Score=62.33  Aligned_cols=103  Identities=12%  Similarity=0.049  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh-C-CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      +-++||-||-|.|.+.-.+.+. . .+|++.|+++.+++.+++-...|..... ..++++...|-.....          
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~-~~r~~i~~~Da~~~l~----------  148 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE-DPRVNLVIGDGVAFLK----------  148 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-STTEEEEESCHHHHHH----------
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcccc-CCCcEEEEccHHHHHh----------
Confidence            4579999999999888888876 3 6899999999999999987654432211 4566666555322100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc-----ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~-----~~~~~L~~tl~~lL~~~~  245 (335)
                                 ....++||+||. |+.-..     =....+++.+++.|+++|
T Consensus       149 -----------~~~~~~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~G  189 (290)
T d1xj5a_         149 -----------NAAEGSYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPGG  189 (290)
T ss_dssp             -----------TSCTTCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred             -----------hccccCccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCc
Confidence                       001248999996 443211     125678999999999987

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.95  E-value=0.00049  Score=61.98  Aligned_cols=102  Identities=13%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      ..++||-||.|.|.+.-.+.+..  .+|++.|+++.+++.+++-...|..... ..++++..-|-....           
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~-dprv~i~i~Da~~~l-----------  173 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS-HPKLDLFCGDGFEFL-----------  173 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG-CTTEEEECSCHHHHH-----------
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccC-CCCeEEEEchHHHHH-----------
Confidence            45799999999998888888763  6999999999999999987655432221 355655544422110           


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCc-----ccHHHHHHHHHHhccCCC
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~-----~~~~~L~~tl~~lL~~~~  245 (335)
                                 .....+||+||. |+.-..     =....+++.+++.|+++|
T Consensus       174 -----------~~~~~~yDvII~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~G  214 (312)
T d2b2ca1         174 -----------KNHKNEFDVIIT-DSSDPVGPAESLFGQSYYELLRDALKEDG  214 (312)
T ss_dssp             -----------HHCTTCEEEEEE-CCC-------------HHHHHHHHEEEEE
T ss_pred             -----------HhCCCCCCEEEE-cCCCCCCcchhhhhHHHHHHHHhhcCCCc
Confidence                       112458999996 432111     135668899999999987

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00072  Score=56.60  Aligned_cols=106  Identities=12%  Similarity=0.089  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      ...+|..+||.+||+|-.+..++..  ..+|++.|.++++++.++.+.....      .++.+...++.+....      
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f~~~~~~------   87 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREADFL------   87 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGHHHH------
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc------ccccchhHHHhhHHHH------
Confidence            3468889999999999877776665  5799999999999999999886643      4567766665432000      


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccC----------cccHHHHHHHHHHhccCCCcc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~----------~~~~~~L~~tl~~lL~~~~~~  247 (335)
                          ..        .....+||-|+. |+=+.          .......+....++|+++|..
T Consensus        88 ----~~--------~~~~~~vdgIl~-DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l  137 (192)
T d1m6ya2          88 ----LK--------TLGIEKVDGILM-DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRI  137 (192)
T ss_dssp             ----HH--------HTTCSCEEEEEE-ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEE
T ss_pred             ----HH--------HcCCCCcceeee-ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCee
Confidence                00        001357888875 22111          123445667777788887744

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.006  Score=54.07  Aligned_cols=61  Identities=13%  Similarity=0.107  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      ..|.+|||+.||.|-=++.+|.+   ...|++.|.++.=++.++.|++..+     ..++.+...|...
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-----~~~~~~~~~d~~~  156 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLA  156 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGG
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-----ccceeeeehhhhh
Confidence            57899999999999877766654   4689999999999999999999887     3567776666544

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0035  Score=55.37  Aligned_cols=49  Identities=24%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCchHHHHHHHHHHHHcc
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      ..+|.+|||+.||.|-=++.+|..+  ..|++.|.++.=+..++.|+++.+
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g  150 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG  150 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc
Confidence            3578999999999997777777664  589999999999999999998876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.48  E-value=0.0063  Score=56.61  Aligned_cols=115  Identities=10%  Similarity=0.029  Sum_probs=77.0

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---------------CEEEEecCchHHHHHHHHHHHHccCC
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---------------WTVFLTDHGNYILDNCAKNVQLNSGV  168 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~---------------~~V~~TD~~~~~l~~~~~Nv~~N~~~  168 (335)
                      -++++|....   ....+.+|+|-.||+|-.-+.+.+.-               ..+++.|+++.+...++.|...++..
T Consensus       149 ~Iv~~mv~ll---~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         149 PLIQAMVDCI---NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHH---CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhHhhheec---cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            3556666554   23467899999999998777776641               25999999999999999999887643


Q ss_pred             CCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc-----------------ccHH
Q 019839          169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD-----------------DLTD  231 (335)
Q Consensus       169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~-----------------~~~~  231 (335)
                      .   .......-|+....                        ...+||+||+.-.+-..                 ...-
T Consensus       226 ~---~~~~i~~~d~l~~~------------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~  278 (425)
T d2okca1         226 T---DRSPIVCEDSLEKE------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL  278 (425)
T ss_dssp             S---SCCSEEECCTTTSC------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred             c---ccceeecCchhhhh------------------------cccccceEEecCCCCCCccccchhhhhhcccccccHHH
Confidence            2   12223333333221                        23479999986655110                 1234


Q ss_pred             HHHHHHHHhccCCCcce
Q 019839          232 ALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       232 ~L~~tl~~lL~~~~~~~  248 (335)
                      .++..+..+|+++|+.+
T Consensus       279 ~Fi~~~~~~Lk~~G~~~  295 (425)
T d2okca1         279 NFLQHMMLMLKTGGRAA  295 (425)
T ss_dssp             HHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEE
Confidence            68888899999988765

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.09  E-value=0.0026  Score=55.26  Aligned_cols=98  Identities=12%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             CeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCC----CCeeEEEeccCCCCCCCCccCCCCCc
Q 019839          122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH----QGSVHVRDLNWMNPWPPIFSLGNSSA  197 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~----~~~v~v~~ldW~~~~~~~~~~~~~~~  197 (335)
                      .+|||+-||.|.-++++|..|.+|++.+.++.+..+++.|+++.......    ..++++...|-.+...          
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~----------  159 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT----------  159 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST----------
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh----------
Confidence            48999999999999999999999999999998888888877654321100    1356666544111100          


Q ss_pred             cccccccCcchhhccCCccEEEEeccccCcccHHH----HHHHHHHhcc
Q 019839          198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDA----LFHTLKRLMP  242 (335)
Q Consensus       198 ~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~----L~~tl~~lL~  242 (335)
                                  .....||+|.. |.+|....-.+    -++.++.+..
T Consensus       160 ------------~~~~~~DvIYl-DPMFp~~~Ksa~~kk~m~~l~~l~~  195 (250)
T d2oyra1         160 ------------DITPRPQVVYL-DPMFPHKQKSALVKKEMRVFQSLVG  195 (250)
T ss_dssp             ------------TCSSCCSEEEE-CCCCCCCCC-----HHHHHHHHHSC
T ss_pred             ------------ccCCCCCEEEE-CCCCccccccccchhHHHHHHhhcc
Confidence                        01246999986 88886543333    3445555553

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.04  E-value=0.013  Score=52.38  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=48.5

Q ss_pred             eeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHcc
Q 019839           97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus        97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      .+=+.|-.|+-+++.      ...|.+|||+.||.|-=++.++..   ...|++.|.++.=+..++.|+...+
T Consensus        99 ~vQD~aS~l~~~~l~------~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~  165 (313)
T d1ixka_          99 YIQEASSMYPPVALD------PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG  165 (313)
T ss_dssp             EECCHHHHHHHHHHC------CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred             EEecccccchhhccc------CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH
Confidence            333455555555543      358899999999999877777655   3589999999999999999998866

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.66  E-value=0.013  Score=50.14  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             ccceeehhHHHHHHH--HHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh------CCEEEEecCchHHHHHHHHHHHHc
Q 019839           94 VGLQVWKAELVLADF--VMHKMCTSSDFNGIISLELGAGTGLAGILLSRV------AWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus        94 ~G~~vW~aa~~La~~--l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~------~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      -|..+|.....++-|  |...      .+.++|||+|++.|...+.+|..      ..+|++.|+++.....     ..+
T Consensus        58 ~G~p~~k~p~d~~~~~eli~~------~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~  126 (232)
T d2bm8a1          58 RGLRMLKDPDTQAVYHDMLWE------LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PAS  126 (232)
T ss_dssp             TTEECCSCHHHHHHHHHHHHH------HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGG
T ss_pred             cceecccCHHHHHHHHHHHHH------hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhc
Confidence            366777665555544  3333      57889999999999777666543      3689999997532111     011


Q ss_pred             cCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                      .     ..++++...|-.+...           ...       + ....+|+|+- |--|.....-.-+. +..+|++||
T Consensus       127 ~-----~~~I~~i~gDs~~~~~-----------~~~-------l-~~~~~dlIfI-D~~H~~~~v~~~~~-~~~lLk~GG  180 (232)
T d2bm8a1         127 D-----MENITLHQGDCSDLTT-----------FEH-------L-REMAHPLIFI-DNAHANTFNIMKWA-VDHLLEEGD  180 (232)
T ss_dssp             G-----CTTEEEEECCSSCSGG-----------GGG-------G-SSSCSSEEEE-ESSCSSHHHHHHHH-HHHTCCTTC
T ss_pred             c-----ccceeeeecccccHHH-----------HHH-------H-HhcCCCEEEE-cCCcchHHHHHHHH-HhcccCcCC
Confidence            1     3567777766443210           000       1 1225677665 33344333222232 457899877

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.27  E-value=0.016  Score=46.90  Aligned_cols=95  Identities=18%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      .+..+|+=||+| +|+-++..|+. |+.|++.|.+++.++.++.-...+         +.....+   .           
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---------~~~~~~~---~-----------   86 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---------VELLYSN---S-----------   86 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---------SEEEECC---H-----------
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---------ceeehhh---h-----------
Confidence            467899999999 68888887765 999999999998888876554322         1111110   0           


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                               +...+.....|+||++=.+--......+-+.+-+.|++|+
T Consensus        87 ---------~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GS  126 (168)
T d1pjca1          87 ---------AEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGS  126 (168)
T ss_dssp             ---------HHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTC
T ss_pred             ---------hhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCc
Confidence                     0011234589999998776665555555667777888876

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.025  Score=53.89  Aligned_cols=120  Identities=13%  Similarity=0.019  Sum_probs=74.6

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--------------------CCEEEEecCchHHHHHHHHHHH
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--------------------AWTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~--------------------~~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      -++++|....   ....+.+|+|-.||+|-.-+.+.+.                    ...+++.|+++.+...++.|+.
T Consensus       151 ~Iv~~mv~ll---~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         151 PLIKTIIHLL---KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             HHHHHHHHHH---CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             chhHhhhhcc---cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            4567766654   3356789999999999777766553                    1258999999999999999998


Q ss_pred             HccCCCCCCCeeEEEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc--------------cc
Q 019839          164 LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------DL  229 (335)
Q Consensus       164 ~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~--------------~~  229 (335)
                      +++........-...   +.+..                   ..+.....+||+||+.-.+-..              ..
T Consensus       228 l~~~~~~i~~~~~~~---~~~~l-------------------~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~  285 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIR---LGNTL-------------------GSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK  285 (524)
T ss_dssp             TTTCCCBGGGTBSEE---ESCTT-------------------SHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH
T ss_pred             hhcccccccccchhh---hhhhh-------------------hhcccccccceeEEecCCccccccccchhhhccccccc
Confidence            765321000000000   00000                   0011234589999996655221              12


Q ss_pred             HHHHHHHHHHhccCCCcce
Q 019839          230 TDALFHTLKRLMPLGSKKV  248 (335)
Q Consensus       230 ~~~L~~tl~~lL~~~~~~~  248 (335)
                      .-.|+..+-++|+++|+.+
T Consensus       286 ~~~Fi~~~l~~Lk~gGr~a  304 (524)
T d2ar0a1         286 QLCFMQHIIETLHPGGRAA  304 (524)
T ss_dssp             HHHHHHHHHHHEEEEEEEE
T ss_pred             cHHHHHHHHHhccccCcEE
Confidence            3357888889999988765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.029  Score=44.86  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||-+||| .|+..+.+|+. |.+|+++|.+++-++.+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence            45689999999999 78888887766 8899999999887777764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.058  Score=43.44  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| +|+..+.+|+. |+ +|+++|.+++-++.+++
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            34579999999998 57777777776 64 89999999988877754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.83  E-value=0.081  Score=41.74  Aligned_cols=44  Identities=20%  Similarity=0.171  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ...+|.+||=+||| .|+..+.+++. |.+|+++|.+++-++.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence            34678899999998 67777777776 7899999999877777653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.043  Score=48.95  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=37.1

Q ss_pred             CCCCeEEEEcCccCHHHHHHHHh--CCEEEEecCchHHHHHHHHHH
Q 019839          119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~la~~--~~~V~~TD~~~~~l~~~~~Nv  162 (335)
                      .++.+|||+|.|.|.++..+...  .++|++.+.++...+.++...
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence            46779999999999998888765  358999999999999887653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.34  E-value=0.08  Score=45.00  Aligned_cols=59  Identities=14%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHH
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL  164 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~  164 (335)
                      .+.|.+++....    ..+|..|||-=||+|-+++++.++|.+.++.|++++..+.+++++..
T Consensus       193 P~~L~~~~I~~~----s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         193 PAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhh----cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            456777776652    36889999999999999999999999999999999999999988865

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.10  E-value=0.11  Score=43.57  Aligned_cols=57  Identities=11%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHH
Q 019839          103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ  163 (335)
Q Consensus       103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~  163 (335)
                      +.|.+++....    ..+|..|||-=||+|.+++++.+.|.+.++.|++++.++.++++++
T Consensus       199 ~~L~~~lI~~~----s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHh----CCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45677776653    3688999999999999999999999999999999999999988864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.07  E-value=0.059  Score=42.72  Aligned_cols=44  Identities=25%  Similarity=0.284  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ....|.+||=+||| .|+..+.+++. |++|+++|.+++-++.+++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            44678899999998 67777777766 7899999999887777764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.49  E-value=0.16  Score=41.53  Aligned_cols=44  Identities=25%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcCcc-CHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAGT-GLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~Gt-GL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||-+|||. |+..+.+|+. | .+|+++|.++.-++.+++
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            456899999999995 7888887765 4 589999999888877764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=91.78  E-value=0.077  Score=45.90  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839          104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      .|.++|....    ..+|..|||-=||+|-++++|..+|.+.+++|++++..+.+++.+..+
T Consensus       238 ~L~~rlI~~~----s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhc----ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            5666666552    358889999999999999999999999999999999999998776543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.44  E-value=0.23  Score=39.68  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=37.1

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAKN  161 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~N  161 (335)
                      ..-+|.+|+=.||| .|+.++.+++. | ++|+++|.+++-++.+++-
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            45679999999999 67888888877 4 6999999999888877643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.35  E-value=0.32  Score=37.88  Aligned_cols=44  Identities=18%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=.||| .|+..+.+++. |++|+++|.+++=++.++.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            34678999999998 57777777766 7899999999877777654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.33  Score=41.29  Aligned_cols=63  Identities=16%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN  184 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~  184 (335)
                      ..++||+||=-|++.|+   ++..+++.|++|++++.+++-++.+...+....     ...+.....|..+
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-----~~~~~~~~~d~~~   75 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-----AASAHYIAGTMED   75 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CSEEEEEECCTTC
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-----cccchhhhhhhhh
Confidence            45899999999999884   233344458999999999988888776655443     3456666555443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.19  E-value=0.42  Score=38.48  Aligned_cols=51  Identities=16%  Similarity=0.096  Sum_probs=39.9

Q ss_pred             CCCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHcc
Q 019839          116 SSDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS  166 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~  166 (335)
                      ...++||+||=.|++.|+   ++..+++.|++|++++.+++-++.+...+..+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~   71 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF   71 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc
Confidence            467999999999987663   334455568999999999988888877776654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.14  E-value=0.33  Score=41.21  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||++|=-|++.|+   ++..+++.|++|+++|.+++-++.+...+...+      .++.....|..+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~   66 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTSE   66 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCH
Confidence            799999999998775   344455569999999999988888877776543      5677778887664

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.26  Score=38.85  Aligned_cols=44  Identities=18%  Similarity=0.104  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+..+.+|+. |++++++|.+++-++.+++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence            45689999999998 57777777775 7888899998776666653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.27  Score=38.87  Aligned_cols=57  Identities=19%  Similarity=0.083  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcC-c-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~-G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      .+..-|.+.+...  ...-+|.+||=.|| | +|+..+.+|+. |.+|++++.+++-++.++
T Consensus        11 ~~~~TA~~al~~~--~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~   70 (174)
T d1yb5a2          11 IPYFTAYRALIHS--ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL   70 (174)
T ss_dssp             HHHHHHHHHHHTT--SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc
Confidence            3444444443322  24458999999997 3 77888888876 789999998876666665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.12  E-value=0.26  Score=39.32  Aligned_cols=44  Identities=11%  Similarity=0.137  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+.++.+++. | .+|+++|.+++-++.+++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            56789999999999 67888887776 5 589999999888877764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.95  E-value=0.27  Score=39.29  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+.++.+|+. | ..|+++|.+++=++.+++
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            45688999999999 59999999988 5 489999999876666654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.90  E-value=0.26  Score=39.33  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|.+||=+||| .|+..+.+|+. | .+|+++|.++.-++.++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            45678899999999 48888888887 5 47999999987777765

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.37  E-value=0.22  Score=40.39  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEcCccCHHHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ...+|..++|..+|.|--+..+.....+|++.|.++++++.++..   .      ..++.+....+.+.....       
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~---~------~~~~~~~~~~f~~~~~~l-------   78 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL---H------LPGLTVVQGNFRHLKRHL-------   78 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C------CTTEEEEESCGGGHHHHH-------
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc---c------ccceeEeehHHHHHHHHH-------
Confidence            346889999999999977777777777999999999998877642   1      245666665544421000       


Q ss_pred             ccccccccCcchhhccCCccEEEEeccccCc----------ccHHHHHHHHHHhccCCCcc
Q 019839          197 ASQERYSWNSSELKEVQRASVLLAADVIYSD----------DLTDALFHTLKRLMPLGSKK  247 (335)
Q Consensus       197 ~~~~~~~w~~~~~~~~~~fDlIlasDviY~~----------~~~~~L~~tl~~lL~~~~~~  247 (335)
                                 .....+++|.||+ |+=+..          ......+.....+++++|..
T Consensus        79 -----------~~~~~~~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~  127 (182)
T d1wg8a2          79 -----------AALGVERVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRL  127 (182)
T ss_dssp             -----------HHTTCSCEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             -----------HHcCCCccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeE
Confidence                       0011357888876 332221          12334566777778887643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.33  Score=39.12  Aligned_cols=114  Identities=12%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeE
Q 019839          100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH  176 (335)
Q Consensus       100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~  176 (335)
                      +|+.-|.+-....   .-.-++.+||||||+.|--+-+++..   ...|++.|+.+.           +.     ...+.
T Consensus         5 RaafKL~EI~~k~---~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~-----i~~~~   65 (180)
T d1ej0a_           5 RAWFKLDEIQQSD---KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP-----IVGVD   65 (180)
T ss_dssp             HHHHHHHHHHHHH---CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC-----CTTEE
T ss_pred             HHHHHHHHHHHHh---CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc-----cCCce
Confidence            5777777755443   23347889999999999999888865   257999998641           11     24456


Q ss_pred             EEeccCCCCCCCCccCCCCCccccccccCcchhhccCCccEEEEeccccCc------------ccHHHHHHHHHHhccCC
Q 019839          177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD------------DLTDALFHTLKRLMPLG  244 (335)
Q Consensus       177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~------------~~~~~L~~tl~~lL~~~  244 (335)
                      +...+..+.....           ..    .......++|+|++=.. -+.            .+....+....++|++|
T Consensus        66 ~~~~d~~~~~~~~-----------~~----~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g  129 (180)
T d1ej0a_          66 FLQGDFRDELVMK-----------AL----LERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             EEESCTTSHHHHH-----------HH----HHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             Eeecccccchhhh-----------hh----hhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCC
Confidence            6666655431000           00    00112357999987322 221            23455677788889998


Q ss_pred             Ccce
Q 019839          245 SKKV  248 (335)
Q Consensus       245 ~~~~  248 (335)
                      |..+
T Consensus       130 G~fV  133 (180)
T d1ej0a_         130 GSFV  133 (180)
T ss_dssp             EEEE
T ss_pred             CcEE
Confidence            8543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.52  Score=39.85  Aligned_cols=64  Identities=14%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEcCccCHHH---HHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~g---l~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .|+||.||=-|++.|+-.   ..+++.|++|+++|.+++-++.+..-+.....    ..++.+...|-.+.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dls~~   73 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY----PGTLIPYRCDLSNE   73 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEEccCCCH
Confidence            489999999999988522   23344489999999998888777766655432    35777788887764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.2  Score=39.65  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-CC-EEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-AW-TVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~~-~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+..+.+++. |+ +|+++|.++.-++.+++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            34578899999998 57777777766 65 89999999887777653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.84  E-value=0.36  Score=41.32  Aligned_cols=64  Identities=13%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||++|=-|++.|+   +...+++.|++|+++|.+++-++.+...+..++..   ..++.+...|..+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~---~~~~~~~~~Dv~~~   68 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP---AEKINAVVADVTEA   68 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEEeeCCCH
Confidence            689999999998875   33444555899999999998888888888765421   24678888887665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.57  E-value=0.6  Score=39.53  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||++|=-|++.|+   ++..+++.|++|+++|.+++-++.+...+.....    ..++.+...|..+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~----~~~~~~~~~Dvt~~   67 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP----DAEVLTTVADVSDE   67 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT----TCCEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC----CCeEEEEeccCCCH
Confidence            789999999998875   3455666699999999999888777666654432    35677788887764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.19  E-value=0.21  Score=40.62  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCc-cCHHHHHHHHh-CCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCCCC
Q 019839          119 FNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS  196 (335)
Q Consensus       119 ~~g~~VLELG~G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~  196 (335)
                      ++..+|+=||+| .|+.++..|+. |+.|++.|.++..++.++.....+         +.+....+......   .+-+.
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~---------i~~~~~~~~~~~~~---~gyA~   94 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF---------ITVDDEAMKTAETA---GGYAK   94 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE---------CCC-------------------
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce---------EEEecccccccccc---ccchh
Confidence            456799999999 57888777764 999999999998888877532211         11111111110000   00000


Q ss_pred             ccccccccCc--chhhccCCccEEEEeccccCcccHHHHHHHHHHhccCCC
Q 019839          197 ASQERYSWNS--SELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS  245 (335)
Q Consensus       197 ~~~~~~~w~~--~~~~~~~~fDlIlasDviY~~~~~~~L~~tl~~lL~~~~  245 (335)
                      ..+..+.-..  ...+.....|+||++=.+--...+..+-+.+-+.|++|+
T Consensus        95 ~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GS  145 (183)
T d1l7da1          95 EMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGS  145 (183)
T ss_dssp             -------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTC
T ss_pred             hcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCc
Confidence            0000000000  011235689999998777766554445566777888876

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.88  E-value=0.47  Score=40.42  Aligned_cols=65  Identities=14%  Similarity=0.169  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+++-++.+...+...+..   ..++.+...|..+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvs~~   69 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS---EKQVNSVVADVTTE   69 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC---GGGEEEEECCTTSH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---CCceEEEEccCCCH
Confidence            4899999999998774   23444555899999999998888888777655321   34678888887664

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.59  Score=39.34  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCccCHHHHHH----HHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCCCCCCccCCC
Q 019839          119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN  194 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~gl~l----a~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~  194 (335)
                      +.||++|=-|++.|+ |.++    ++.|++|+++|.+++-++.+...+.....    ..++.+...|-.+....      
T Consensus         1 i~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dv~~~~~v------   69 (254)
T d2gdza1           1 VNGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE----PQKTLFIQCDVADQQQL------   69 (254)
T ss_dssp             CTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC----GGGEEEEECCTTSHHHH------
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CCcEEEEEeecCCHHHH------
Confidence            368999999998775 4444    44589999999998877776655533211    35677778887664110      


Q ss_pred             CCccccccccCcchhhccCCccEEEEeccccCccc
Q 019839          195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDL  229 (335)
Q Consensus       195 ~~~~~~~~~w~~~~~~~~~~fDlIlasDviY~~~~  229 (335)
                          ...+   +.-....++.|+++.+=-+.....
T Consensus        70 ----~~~~---~~~~~~~G~iDilVnnAg~~~~~~   97 (254)
T d2gdza1          70 ----RDTF---RKVVDHFGRLDILVNNAGVNNEKN   97 (254)
T ss_dssp             ----HHHH---HHHHHHHSCCCEEEECCCCCCSSS
T ss_pred             ----HHHH---HHHHHHcCCcCeeccccccccccc
Confidence                0000   001123468999888665555543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.66  E-value=0.53  Score=36.86  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=.||| .|+.++.+++. | +.|+++|.+++-++.+++
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            45689999999998 45666666665 5 689999999877777764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=1.1  Score=38.79  Aligned_cols=69  Identities=20%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             CCCCCCCeEEEEcCccCHH---HHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          116 SSDFNGIISLELGAGTGLA---GILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       116 ~~~~~g~~VLELG~GtGL~---gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      +..++||++|=-|++.|+-   ...+++.|++|+++|.+++-++.+...+..+..... ..++.+...|-.+.
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~-~~~~~~~~~Dvs~~   78 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK-QARVIPIQCNIRNE   78 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTC-CCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcccc-CceEEEEeccCCCH
Confidence            4568999999999988752   233444589999999998888777666655432211 45677777876664

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.43  E-value=0.92  Score=38.28  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||+||=.|+..|+   ++..+++.|++|+++|.++.-++.+.+.+..+.      ..+.+..+|..+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~~   67 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSR   67 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCCH
Confidence            4689999999998774   334455568999999999888887777776554      4567777877654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=0.8  Score=38.51  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||++|=-|++.|+   +...+++.|++|+++|.+++-++.+...+....     ..++.....|-.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~   67 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNY   67 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCH
Confidence            4789999999998775   334455569999999999877766665554332     24567777777654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=1.1  Score=37.60  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..+.||.||=-|++.|+   ++..+++.|++|+++|.+++-++.+..++...      ..++.....|-.+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dvs~~   68 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNR   68 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCH
Confidence            45899999999999885   33445555999999999998888888887653      35677788877665

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=87.60  E-value=1.3  Score=37.58  Aligned_cols=41  Identities=12%  Similarity=0.188  Sum_probs=34.4

Q ss_pred             CeEEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHH
Q 019839          122 IISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       122 ~~VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv  162 (335)
                      ++||||=||.|-.++.+-+.|.+ |.+.|+++.+.+..+.|.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~   42 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH   42 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            47999999999999888888865 559999998888877773

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.30  E-value=0.9  Score=35.73  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=+||| .|+..+.+|+. | ..|+++|.++.-++.+++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            34678999999998 56777777765 4 478899999877777764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=87.29  E-value=0.36  Score=41.17  Aligned_cols=54  Identities=19%  Similarity=0.035  Sum_probs=41.9

Q ss_pred             ccceeehhHHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CEEEEecCc
Q 019839           94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHG  151 (335)
Q Consensus        94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~~--~~V~~TD~~  151 (335)
                      .|..+=+++.-|.+.....    ....+.+|+|||||.|--+-.++...  ..|.++|+.
T Consensus        44 ~~~~~SR~~~Kl~~~~~~~----~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          44 DHHAVSRGSAKLRWFVERN----LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SSCCSSTHHHHHHHHHHTT----SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             cCCCcchHHHHHHHHHHhc----CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            3557779999997765543    34566789999999999999998773  578888886

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.28  E-value=0.85  Score=38.51  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=47.0

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..++||+||=-|++.|+   ++..+++.|++|+++|.+++-++.+...+..+.      .++.....|-.+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dv~~~   69 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASLR   69 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEeccCCCH
Confidence            34699999999998875   344455559999999999888887777776543      4677777776553

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=87.14  E-value=1.3  Score=37.24  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..++||++|=-|++.|+   +...+++.|++|+++|.+++-++.+...+...+      .++.+...|-.+.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~   69 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSR   69 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCCH
Confidence            35789999999998775   334445558999999999888877776665543      5667777776554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.06  E-value=0.71  Score=39.04  Aligned_cols=64  Identities=14%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||.+|=-|++.|+   +...+++.|++|+++|.+++-++.+...+......   ..++.+...|..+.
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvt~~   69 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS---EQNVNSVVADVTTD   69 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---cCceEEEEccCCCH
Confidence            789999999998774   23344455999999999998888888777665421   34678888887664

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=86.91  E-value=1  Score=38.31  Aligned_cols=63  Identities=24%  Similarity=0.393  Sum_probs=43.9

Q ss_pred             CCCCCCeEEEEcCccCHHHHH----HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGLAGIL----LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL~gl~----la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..++||++|=-|+..|+ |.+    +++.|++|+++|.+..-++.+...+....     ..++.+...|-.+.
T Consensus        21 ~~l~gK~alITGas~GI-G~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~   87 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGL-GKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDP   87 (294)
T ss_dssp             TTTTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCH
T ss_pred             CCCCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccCh
Confidence            36899999999998763 444    44458999999999877766665553322     24566677776553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.72  E-value=0.73  Score=36.17  Aligned_cols=44  Identities=14%  Similarity=-0.082  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCc--cCHHHHHHHHh-CCEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGAG--TGLAGILLSRV-AWTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~G--tGL~gl~la~~-~~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=.|+|  .|+..+.+|+. |++|++||.+++-++.+++
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~   71 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK   71 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence            34578999999666  56777777776 8999999999887777763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.62  E-value=1.2  Score=37.31  Aligned_cols=61  Identities=13%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHH----hCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~----~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||.+|=-|++.|+ |..+|+    .|++|+++|.+++-++.+...+...+      .++.....|-.+.
T Consensus         7 ~lenKvalITGas~GI-G~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~   71 (251)
T d2c07a1           7 CGENKVALVTGAGRGI-GREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKK   71 (251)
T ss_dssp             CCSSCEEEEESTTSHH-HHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCH
Confidence            4689999999998774 444444    48899999999988888877776543      4677777777654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=85.57  E-value=0.73  Score=39.76  Aligned_cols=45  Identities=20%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             CCCCCeEEEEcCccCHHHHHHHHhCCE-EEEecCchHHHHHHHHHH
Q 019839          118 DFNGIISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNV  162 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~la~~~~~-V~~TD~~~~~l~~~~~Nv  162 (335)
                      ...+.+||||=||.|-.++.+-+.|.+ |.+.|+++.+++..+.|.
T Consensus         8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            457899999999999999998888865 566899999999988886

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.42  E-value=0.85  Score=38.39  Aligned_cols=62  Identities=11%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCc-hHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHG-NYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~-~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||++|=-|++.|+   ++..+++.|++|+++|.+ .+.++.+...+....     ..++.+...|-.+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~   67 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSKG   67 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTSH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-----CCcEEEEECCCCCH
Confidence            689999988998875   334455568999999997 466777776665443     35677777777664

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.27  E-value=0.52  Score=37.17  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHhhcCCCCCCCCCeEEEEcC-c-cCHHHHHHHHh-CCEEEEecCchHHHHHHH
Q 019839          101 AELVLADFVMHKMCTSSDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       101 aa~~La~~l~~~~~~~~~~~g~~VLELG~-G-tGL~gl~la~~-~~~V~~TD~~~~~l~~~~  159 (335)
                      .+..-|.+.++..   ..-+|.+||=.|+ | .|+..+.+|+. |++|++++.+++-++.++
T Consensus        11 ~~~~TA~~al~~~---~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~   69 (171)
T d1iz0a2          11 VSFLTAYLALKRA---QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL   69 (171)
T ss_dssp             HHHHHHHHHHHHT---TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred             HHHHHHHHHHHHh---CCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence            3444455555542   4568999999986 4 57777777876 889999999876666555

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.96  Score=38.06  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             CCCCeEEEEcCccCHH---HHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          119 FNGIISLELGAGTGLA---GILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       119 ~~g~~VLELG~GtGL~---gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ++||++|=-|++.|+-   +..+++.|++|+++|.+++-++.+...+...+      .++.+...|-.+.
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~   72 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSE   72 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCH
Confidence            7999999999887752   23344458999999999888888777776543      4667777776654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.88  E-value=1  Score=38.05  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCc-hHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHG-NYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~-~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..++||+||=-|++.|+   ++..+++.|++|+++|.+ ++.++.+...+..+.      .++.+...|..+.
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~   80 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVV   80 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCCH
Confidence            34899999999998875   444455569999999987 466777766666654      5677777777654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.83  E-value=0.71  Score=38.94  Aligned_cols=63  Identities=10%  Similarity=-0.005  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .|+||+||=-|++.|+   ++..+++.|++|+++|.+++-++.+...+....     ..++.....|-.+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~   71 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNT   71 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCH
Confidence            4899999999988775   334445558999999999766655554443322     24577777776654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.67  E-value=1.3  Score=40.01  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCccCHHHHHHHHh----CCEEEEecCchHHHHHHHHHHHHccC
Q 019839          120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSG  167 (335)
Q Consensus       120 ~g~~VLELG~GtGL~gl~la~~----~~~V~~TD~~~~~l~~~~~Nv~~N~~  167 (335)
                      ++..++|+||=.|..++.+++.    ..+|++.+-++...+.+++|+..|..
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            5678999999999888776654    35899999999999999999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.18  E-value=0.69  Score=36.31  Aligned_cols=43  Identities=23%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCc-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          118 DFNGIISLELGAG-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..+|.+||=.||| .|+..+.+++. | ..|+.+|.+++-++.+++
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            3578899999998 57777777765 4 689999999877777663

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.95  E-value=1.2  Score=34.80  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEcCc-cCHHHHHHHHh--CCEEEEecCchHHHHHHHHH
Q 019839          117 SDFNGIISLELGAG-TGLAGILLSRV--AWTVFLTDHGNYILDNCAKN  161 (335)
Q Consensus       117 ~~~~g~~VLELG~G-tGL~gl~la~~--~~~V~~TD~~~~~l~~~~~N  161 (335)
                      ..-+|.+||=+||| .|+..+.+++.  +++|+++|.+++-++.+++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            45689999999997 44555555554  36999999998777777643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.55  E-value=1.2  Score=37.48  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             CCCCCeEEEEcCccCHHHHH----HHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGLAGIL----LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL~gl~----la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||+||=-|++.|+ |..    +++.|++|+++|.+++-++.+...+..       ...+.+...|..+.
T Consensus         3 rL~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~   66 (268)
T d2bgka1           3 RLQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKD   66 (268)
T ss_dssp             TTTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCH
Confidence            4799999999998875 444    444589999999998877776665532       24566677776654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.43  E-value=1.5  Score=34.10  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEcCcc-CHHHHHHHHh--CCEEEEecCchHHHHHHH
Q 019839          117 SDFNGIISLELGAGT-GLAGILLSRV--AWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       117 ~~~~g~~VLELG~Gt-GL~gl~la~~--~~~V~~TD~~~~~l~~~~  159 (335)
                      ..-+|.+||=+|||. |+..+.+++.  +..|+++|.+++-++.++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            456889999999996 5555555554  468999999987776665

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.27  E-value=1.1  Score=37.57  Aligned_cols=61  Identities=13%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          118 DFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       118 ~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+++.++.+...+.  .     ..++.+...|-.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~Dv~~~   66 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG--T-----PDQIQFFQHDSSDE   66 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--C-----TTTEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--C-----CCcEEEEEccCCCH
Confidence            3899999999988774   233445559999999999888877776653  2     35677777776654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=0.87  Score=36.76  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             CeEEEEcCcc-C-HHHHHHHHhCCEEEEecCchHHHHHHHHHHHHc
Q 019839          122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN  165 (335)
Q Consensus       122 ~~VLELG~Gt-G-L~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N  165 (335)
                      ++|-=||||+ | -.+..+++.|..|++.|.+++.++.++.+++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~   50 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES   50 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence            5788899984 3 234455666999999999999998888777654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=83.12  E-value=0.37  Score=34.16  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEcCc-cCHHH-HHHHHhCCEEEEecCch
Q 019839          118 DFNGIISLELGAG-TGLAG-ILLSRVAWTVFLTDHGN  152 (335)
Q Consensus       118 ~~~g~~VLELG~G-tGL~g-l~la~~~~~V~~TD~~~  152 (335)
                      .++||+|+=+|.| +|+.. -.+++.|++|++.|..+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            5899999999886 45322 22334489999999863

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.78  E-value=0.84  Score=40.67  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---------CCEEEEecCchHHHHHHHHH
Q 019839          102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---------AWTVFLTDHGNYILDNCAKN  161 (335)
Q Consensus       102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~la~~---------~~~V~~TD~~~~~l~~~~~N  161 (335)
                      +.++|.|+..........+..+|+|+|+|.|.+..-+.+.         ..+++..+.++.+.+.-+.+
T Consensus        61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~  129 (365)
T d1zkda1          61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  129 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence            3455666654321002223458999999999665433332         23689999997654444443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.68  E-value=1.9  Score=35.95  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=42.4

Q ss_pred             CCCCCCeEEEEcCccCH---HHHHHHHhCCEEEEecCchHHHHHHHHHHHHccCCCCCCCeeEEEeccCCCC
Q 019839          117 SDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP  185 (335)
Q Consensus       117 ~~~~g~~VLELG~GtGL---~gl~la~~~~~V~~TD~~~~~l~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~  185 (335)
                      ..++||++|=-|++.|+   ++..+++.|++|+++|.+++-++.+...+.         .++.+...|-.+.
T Consensus         2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~   64 (244)
T d1nffa_           2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQP   64 (244)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCH
Confidence            35899999999998875   333445558999999999877766655432         3456666766554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.18  E-value=0.81  Score=35.28  Aligned_cols=39  Identities=15%  Similarity=0.005  Sum_probs=26.7

Q ss_pred             CCeEEEEcCc-cCH-HHHHHHHhCCEEEEecCchHHHHHHH
Q 019839          121 GIISLELGAG-TGL-AGILLSRVAWTVFLTDHGNYILDNCA  159 (335)
Q Consensus       121 g~~VLELG~G-tGL-~gl~la~~~~~V~~TD~~~~~l~~~~  159 (335)
                      +|+||=+||| .|. +.-.+++.|.+|++.|.+.+-.+.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~   42 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLS   42 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHH
Confidence            6889999986 342 22233444889999999987665554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.94  E-value=2.3  Score=32.79  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcC-c-cCHHHHHHHHh-C-CEEEEecCchHHHHHHHH
Q 019839          117 SDFNGIISLELGA-G-TGLAGILLSRV-A-WTVFLTDHGNYILDNCAK  160 (335)
Q Consensus       117 ~~~~g~~VLELG~-G-tGL~gl~la~~-~-~~V~~TD~~~~~l~~~~~  160 (335)
                      ..-+|.+||=.|| | .|+..+.+++. | .+|+++|.+++-++.+++
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            4568899999997 3 56666665554 5 699999999877777764