Citrus Sinensis ID: 019879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS
Secondary Structure (PSIPRED)
cEEEEcEEccccEEEEEEccEEccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEccEEEEEEccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHcccccEEEEEEccccccccHHHHHHcccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccEEEEEEcEEEccccEEEEEccccccHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHccccccccccccccccccEEcccHHcccccccccccccccccHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccHHHHHHHHccccEEEEEEEccccccccccEEEEcccEEEEcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MVTVSWIIFADGRYMIEVDRvlrpggywvlsgppinwktnykawqrpKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKvndescrarrddsranfckssdaddvwykkmegcitpypevaggelkafperlyaipprissgsipgvsaesyqeDSNKWKKHVNAYKKINRLLDsgryrnimdmnagfGGFAAAIQSSKLWVMNvvptladkntlgviYERGLIGIYHDWceafstyprtydLIHAHGlfslykdkcnIEDILLEMDRilrpegaiiIRDEVDEIIKVKKIvggmrwdtkmvdhedgplvpEKILVAVKQYWVASGNSTSS
Flexible Loop (DISEMBL)
mvtvswiifadgryMIEVDRVLRpggywvlsgppinwktnykAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAvwqkkvndescrarrddsranfckssdaddvwyKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRilrpegaiiirdevdeiIKVKkivggmrwdtkmvdhedgpLVPEKILVAVKQYWVASGNSTSS
Low Complexity Region (SEG)
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPkeelqeeqrkieeiANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS
Disordered region (IsUnstruct)
**TVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQ************IEEIANLLCWEKKSEKGEIAVWQKKV***************FCK*SDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPP*********************WKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWVA*******
Disordered Region (DISOPRED)
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAW*****E*QEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVND**********************VWYKKMEGCI****************RLYAIP**I******GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDH****LVPEKILVAVKQ***********
Disordered Region (DISEMBL)
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQ*********QRKIEEIANLLCWEKKSEKGEIAVWQKKV*************ANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIP*************WKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWV********
Disordered Region (DISPRO)
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWVAS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
B9DFI7	616	Probable methyltransferas	yes	no	0.964	0.522	0.783	1e-160
Q94EJ6	621	Probable methyltransferas	no	no	0.937	0.504	0.684	1e-130
Q9SZX8	633	Probable methyltransferas	no	no	0.952	0.502	0.569	1e-111
Q9C884	639	Probable methyltransferas	no	no	0.958	0.500	0.548	1e-108
Q9ZPH9	633	Probable methyltransferas	no	no	0.970	0.511	0.547	1e-107
O80844	631	Probable methyltransferas	no	no	0.970	0.513	0.516	1e-101
Q9ZW75	611	Probable methyltransferas	no	no	0.943	0.515	0.504	2e-89
Q9C6S7	603	Probable methyltransferas	no	no	0.967	0.535	0.412	5e-71
Q94II3	600	Probable methyltransferas	no	no	0.976	0.543	0.402	4e-70
Q93W95	600	Probable methyltransferas	no	no	0.913	0.508	0.405	4e-65

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 257/328 (78%), Positives = 296/328 (90%), Gaps = 6/328 (1%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRPKE+LQEEQRKIEE A LLCWEKK
Sbjct: 288 DGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKK 347

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPE------VA 124
            E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYPE      VA
Sbjct: 348 YEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVA 407

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYRNI
Sbjct: 408 GGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYRNI 467

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPRTY
Sbjct: 468 MDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTY 527

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           DLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD K+
Sbjct: 528 DLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKL 587

Query: 305 VDHEDGPLVPEKILVAVKQYWVASGNST 332
           VDHEDGPLVPEK+L+AVKQYWV +  ST
Sbjct: 588 VDHEDGPLVPEKVLIAVKQYWVTNSTST 615

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/323 (68%), Positives = 258/323 (79%), Gaps = 10/323 (3%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           +G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R K EL  EQ++IE IA  LCWEKK
Sbjct: 287 EGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKK 346

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------EVA 124
            EKG+IA+++KK+ND SC      +  + CK  D DDVWYK++E C+TP+P      EVA
Sbjct: 347 YEKGDIAIFRKKINDRSCDR---STPVDTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVA 403

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GG+LK FPERL+A+PP IS G I GV  ESYQED N WKK V  YK+INRL+ S RYRN+
Sbjct: 404 GGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNV 463

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYPRTY
Sbjct: 464 MDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYPRTY 522

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           D IHA G+FSLY+  C +EDILLE DRILRPEG +I RDEVD +  V+KIV GMRWDTK+
Sbjct: 523 DFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKL 582

Query: 305 VDHEDGPLVPEKILVAVKQYWVA 327
           +DHEDGPLVPEKILVA KQYWVA
Sbjct: 583 MDHEDGPLVPEKILVATKQYWVA 605

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/325 (56%), Positives = 244/325 (75%), Gaps = 7/325 (2%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYW+LSGPPINWK  ++ W+R +E+L++EQ  IE++A  LCW+K 
Sbjct: 295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRAN-FCKSSDADDVWYKKMEGCITPYPEV------ 123
           +EKG++++WQK +N   C+  + ++++   C S +AD  WYK +E CITP PE       
Sbjct: 355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414

Query: 124 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 183
           AGG L+ +P+R +A+PPRI  G+IP ++AE ++ED+  WK+ +  YKKI   L  GR+RN
Sbjct: 415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474

Query: 184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 243
           IMDMNA  GGFAA++     WVMNVVP  A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct: 475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534

Query: 244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303
           YD+IHA GLFSLY+ +C++  ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct: 535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594

Query: 304 MVDHEDGPLVPEKILVAVKQYWVAS 328
           +VDHE GP  PEKILVAVK YW   
Sbjct: 595 IVDHEKGPFNPEKILVAVKTYWTGQ 619

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/328 (54%), Positives = 236/328 (71%), Gaps = 8/328 (2%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y+ EVDRVLRPGGYW+LSGPPINWK  +K W+R +E+L++EQ  IE+ A  LCW+K 
Sbjct: 312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371

Query: 71  SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 123
           +EKG++++WQK +N   C + +R       C  SD  D  WYK +E C+TP PE      
Sbjct: 372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431

Query: 124 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 182
            AGG L+ +P R +A+PPRI  G+IP ++AE ++ED+  WK+ ++ YK+I   L  GR+R
Sbjct: 432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491

Query: 183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 242
           NIMDMNA  GGFAAA+     WVMNVVP  A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct: 492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551

Query: 243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 302
           TYDLIHA GLFS+Y+++C++  ILLEMDRILRPEG ++ RD V+ + K++ I  GMRW +
Sbjct: 552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611

Query: 303 KMVDHEDGPLVPEKILVAVKQYWVASGN 330
           +++DHE GP  PEKIL+AVK YW    +
Sbjct: 612 RILDHERGPFNPEKILLAVKSYWTGPSS 639

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/334 (54%), Positives = 241/334 (72%), Gaps = 10/334 (2%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           +G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R +++L  EQ +IE +A  LCW K 
Sbjct: 298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357

Query: 71  SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYPEV------ 123
            ++ ++AVWQK  N   C R R    R  FC  +  +  WY K+E C+TP PEV      
Sbjct: 358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417

Query: 124 --AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGR 180
             AGG+L  +PERL A+PPRI SGS+ G++ + +  ++ KW++ V+ YKK ++ L ++GR
Sbjct: 418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477

Query: 181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY 240
           YRN +DMNA  GGFA+A+    +WVMNVVP  A  NTLGVIYERGLIG Y +WCEA STY
Sbjct: 478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537

Query: 241 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW 300
           PRTYD IHA  +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI   M+W
Sbjct: 538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQW 597

Query: 301 DTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
           + ++ DHE+GPL  EKIL  VK+YW A     SS
Sbjct: 598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/341 (51%), Positives = 241/341 (70%), Gaps = 17/341 (4%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYW+LSGPPINW+  +K W+R  ++L  EQ +IE++A  LCW+K 
Sbjct: 289 DGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKV 348

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPEV----- 123
            ++ ++A+WQK  N   C+  R+  +   FC+   D D  WY KM+ C+TP PEV     
Sbjct: 349 VQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAED 408

Query: 124 ----AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLLDS 178
               AGG+++ +P RL AIPPR++ G++  ++ E++ E++  WK+ V+ YKK++ +L ++
Sbjct: 409 LKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGET 468

Query: 179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 238
           GRYRN++DMNA  GGFAAA+    +WVMNVVP  A  NTLGVIYERGLIG Y +WCEA S
Sbjct: 469 GRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMS 528

Query: 239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 298
           TYPRTYD IHA  +F+LY+ +C  E+ILLEMDRILRP G +IIRD+VD +IKVK++  G+
Sbjct: 529 TYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGL 588

Query: 299 RWDTKMVDHEDGPLVPEKILVAVKQYWVASG-----NSTSS 334
            W+ ++ DHE GP   EKI  AVKQYW         N+TS+
Sbjct: 589 EWEGRIADHEKGPHEREKIYYAVKQYWTVPAPDEDKNNTSA 629

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/321 (50%), Positives = 212/321 (66%), Gaps = 6/321 (1%)

Query: 4   VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIAN 63
           V+W  + DG Y++EVDRVLRP GYWVLSGPP+  +  +K  +R  +ELQ +  K+ ++  
Sbjct: 288 VNWTSY-DGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFR 346

Query: 64  LLCWEKKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPE 122
            LCWEK +E   + +W+K  N   CR R    +    C SSD D  WYK+ME CITP P+
Sbjct: 347 RLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPD 406

Query: 123 VAGGE---LKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSG 179
           V       LK +PERL  +P R+ +GSI G +   ++ D+N W++ V  Y    + L +G
Sbjct: 407 VNDTNKTVLKNWPERLNHVP-RMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNG 465

Query: 180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST 239
           +YRN++DMNAG GGFAAA+    +WVMNVVP     NTLGV+Y+RGLIG Y +WCEA ST
Sbjct: 466 KYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALST 525

Query: 240 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMR 299
           YPRTYDLIHA+G+FSLY DKC+I DILLEM RILRPEGA+IIRD  D ++KVK I   MR
Sbjct: 526 YPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMR 585

Query: 300 WDTKMVDHEDGPLVPEKILVA 320
           W+  M   ++       IL+ 
Sbjct: 586 WNGTMYPEDNSVFDHGTILIV 606

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score =  268 bits (685), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 139/337 (41%), Positives = 209/337 (62%), Gaps = 14/337 (4%)

Query: 4   VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIAN 63
           + W  F  G Y++E+ R++RPGG+WVLSGPP+N+   ++ W    E+ + +  K++ +  
Sbjct: 273 IPWTEFG-GIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLT 331

Query: 64  LLCWEKKSEKGEIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCI-T 118
            +C++K ++K +IAVWQK ++D+SC    A+  ++    C  S + D  WY  +  C+  
Sbjct: 332 SMCFKKYAQKDDIAVWQK-LSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVA 390

Query: 119 PYPEVAG---GELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRL 175
           P P+V     G +  +PERL+  P RI  G + G SA S + D  KWK  V  YKK+   
Sbjct: 391 PTPKVKKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPA 448

Query: 176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE 235
           L + + RN+MDMN  +GGF+AA+    +WVMNVV + +  N+L V+++RGLIG YHDWCE
Sbjct: 449 LGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCE 507

Query: 236 AFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIV 295
           AFSTYPRTYDL+H   LF+L   +C ++ ILLEMDRILRP G +IIR+    +  +  + 
Sbjct: 508 AFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLA 567

Query: 296 GGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNST 332
            G+RW  +  + E   +  EKILV  K+ W +S  ++
Sbjct: 568 KGIRWSCRREETEYA-VKSEKILVCQKKLWFSSNQTS 603

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 136/338 (40%), Positives = 204/338 (60%), Gaps = 12/338 (3%)

Query: 4   VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIAN 63
           + W  F  G Y++EV R+LRPGG+WVLSGPP+N++  +K W    EE +    K++E+ +
Sbjct: 267 IPWTEFG-GVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLS 325

Query: 64  LLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDA---DDVWYKKMEGCIT-P 119
            +C++  ++K +IAVWQK  ++       +D  A   K  D+   D  WY  +  C+  P
Sbjct: 326 SMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVP 385

Query: 120 YPEVAGGELKA---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLL 176
            P++   +L++   +PERL+  P RIS   +PG +   ++ D +KWK     YKK+   +
Sbjct: 386 SPKLKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPAI 443

Query: 177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA 236
            S + RN+MDMN  +GG AAA+ +  LWVMNVV + A  NTL V+++RGLIG YHDWCEA
Sbjct: 444 GSDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEA 502

Query: 237 FSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG 296
           FSTYPRTYDL+H  GLF+    +C+++ ++LEMDRILRP G  IIR+       +  +  
Sbjct: 503 FSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAK 562

Query: 297 GMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
            +RW  +    E      EK+L+  K+ W +S  S+ +
Sbjct: 563 ELRWSCRKEQTESAS-ANEKLLICQKKLWYSSNASSET 599

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/333 (40%), Positives = 189/333 (56%), Gaps = 28/333 (8%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           +  Y IEVDR+LRPGGY V+SGPP+ W    K W             ++ +A  LC+E  
Sbjct: 283 NATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-----------DLQAVARALCYELI 331

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFC-KSSDADDVWYKKMEGCITPYPEVAG---- 125
           +  G   +W+K V D SC   +++     C +S    D WY K++ C+T    V G    
Sbjct: 332 AVDGNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHAL 390

Query: 126 GELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNI 184
           G +  +PERL  +P R     +     + ++ D+ +W + V  Y+  +N  L S   RN+
Sbjct: 391 GTISKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNV 447

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNA FGGFAA + S  +WVMNV+P      TL VIY+RGLIG+YHDWCE FSTYPRTY
Sbjct: 448 MDMNAFFGGFAATLASDPVWVMNVIPA-RKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTY 506

Query: 245 DLIHAHGLFSLY------KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 298
           D IH  G+ SL       K +C++ D+++EMDRILRPEG ++IRD  + + KV ++   +
Sbjct: 507 DFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAV 566

Query: 299 RWDTKMVDHEDGPLVPEKILVAVKQYWVASGNS 331
           RW + + + E      EKIL+A K  W    NS
Sbjct: 567 RWSSSIHEKEPESHGREKILIATKSLWKLPSNS 599

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255562840	612	ATP binding protein, putative [Ricinus c	0.970	0.529	0.830	1e-165
6752888	608	unknown [Malus x domestica]	0.964	0.529	0.817	1e-161
224099725	615	predicted protein [Populus trichocarpa]	0.964	0.523	0.812	1e-161
356567513	608	PREDICTED: probable methyltransferase PM	0.964	0.529	0.826	1e-161
217074996	610	unknown [Medicago truncatula]	0.970	0.531	0.805	1e-160
357516137	610	hypothetical protein MTR_8g055840 [Medic	0.970	0.531	0.805	1e-160
224111282	617	predicted protein [Populus trichocarpa]	0.970	0.525	0.790	1e-159
357516141	402	hypothetical protein MTR_8g055840 [Medic	0.970	0.805	0.805	1e-159
449495984	452	PREDICTED: probable methyltransferase PM	0.970	0.716	0.781	1e-159
357516139	507	hypothetical protein MTR_8g055840 [Medic	0.970	0.639	0.805	1e-159

>gi|255562840|ref|XP_002522425.1| ATP binding protein, putative [Ricinus communis] gi|223538310|gb|EEF39917.1| ATP binding protein, putative [Ricinus communis]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/330 (83%), Positives = 304/330 (92%), Gaps = 6/330 (1%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           +G YM+EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEE A LLCWEKK
Sbjct: 282 EGMYMMEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEFAKLLCWEKK 341

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEV------A 124
            E+GE+AVWQK+VN ESC +R+D+S+A FCKS+D+DDVWYKKME CITPYPEV      A
Sbjct: 342 YEQGEMAVWQKRVNAESCASRQDNSQATFCKSADSDDVWYKKMEACITPYPEVGSQDEVA 401

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GG LKAFP+RLYA+PPR+SSGSIPGVS E+YQED+  WKKHV+AYKKINRL+DSGRYRNI
Sbjct: 402 GGGLKAFPDRLYAVPPRVSSGSIPGVSVETYQEDNKNWKKHVSAYKKINRLIDSGRYRNI 461

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAG GGFAAA+QS KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPRTY
Sbjct: 462 MDMNAGLGGFAAALQSPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPRTY 521

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           DLIHA+G+FSLYK+KC+ EDILLEMDRILRPEGA+I RDEVD +IKV+KIV GMRWDTKM
Sbjct: 522 DLIHANGVFSLYKEKCDFEDILLEMDRILRPEGAVIFRDEVDVLIKVRKIVAGMRWDTKM 581

Query: 305 VDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
           VDHEDGPLVPEKILVAVKQYWV  GNSTS+
Sbjct: 582 VDHEDGPLVPEKILVAVKQYWVTGGNSTSA 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6752888|gb|AAF27920.1|AF220204_1 unknown [Malus x domestica]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/324 (81%), Positives = 300/324 (92%), Gaps = 2/324 (0%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG+Y+ EVDRVLRPGGYWVLSGPPINWK NY+AWQRPKE+LQEEQR+IEE A LLCWEKK
Sbjct: 286 DGKYLKEVDRVLRPGGYWVLSGPPINWKNNYQAWQRPKEDLQEEQRQIEEAAKLLCWEKK 345

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEKGE A+WQK+V+ +SC  R+DDSRANFCK+ +AD VWYKKMEGCITPYP+V+ GELK 
Sbjct: 346 SEKGETAIWQKRVDSDSCGDRQDDSRANFCKADEADSVWYKKMEGCITPYPKVSSGELKP 405

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP+RLYA+PPRISSGS+PGVS E Y+ED+NKWKKHVNAYK+IN+L+D+GRYRNIMDMNAG
Sbjct: 406 FPKRLYAVPPRISSGSVPGVSVEDYEEDNNKWKKHVNAYKRINKLIDTGRYRNIMDMNAG 465

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            GGFAAAI+S KLWVMNV+PT+A+KNTLGV+YERGLIGIYHDWCE FSTYPRTYDLIHAH
Sbjct: 466 LGGFAAAIESPKLWVMNVMPTIAEKNTLGVVYERGLIGIYHDWCEGFSTYPRTYDLIHAH 525

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           G+FS+Y  KCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTK+VDHEDG
Sbjct: 526 GVFSMYNGKCNWEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKLVDHEDG 585

Query: 311 PLVPEKILVAVKQYWVASGNSTSS 334
           PLVPEK+LVAVKQYWV  GNSTS+
Sbjct: 586 PLVPEKVLVAVKQYWV--GNSTSA 607

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099725|ref|XP_002311593.1| predicted protein [Populus trichocarpa] gi|222851413|gb|EEE88960.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/330 (81%), Positives = 303/330 (91%), Gaps = 8/330 (2%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYWVLSGPPINWK NYK+WQRPKEELQEEQRKIEE A LLCW+KK
Sbjct: 287 DGMYLMEVDRVLRPGGYWVLSGPPINWKNNYKSWQRPKEELQEEQRKIEETAKLLCWDKK 346

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------EVA 124
            EKGE+A+WQK+VN +SCRAR+DDSRA FCKS+D DDVWYKKME CITPY       EVA
Sbjct: 347 YEKGEMAIWQKRVNADSCRARQDDSRATFCKSADVDDVWYKKMEACITPYSDSGSSDEVA 406

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GG LK FPERLYAIPPR++SGSIPGVS E+YQ+ +N+WKKHVNAYKKIN+L+DSGRYRNI
Sbjct: 407 GGALKVFPERLYAIPPRVASGSIPGVSVETYQDYNNEWKKHVNAYKKINKLIDSGRYRNI 466

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE+FSTYPRTY
Sbjct: 467 MDMNAGLGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCESFSTYPRTY 526

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           DLIHA G+FSLY+DKC++EDILLEMDRILRPEGA+I RDEVD ++KV+K+VGGM+WDTKM
Sbjct: 527 DLIHASGVFSLYRDKCDMEDILLEMDRILRPEGAVIFRDEVDVLVKVRKMVGGMKWDTKM 586

Query: 305 VDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
           VDHEDGPLVPEKILVAVKQYWV  GNSTS+
Sbjct: 587 VDHEDGPLVPEKILVAVKQYWV--GNSTSA 614

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567513|ref|XP_003551963.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max]

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/322 (82%), Positives = 291/322 (90%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           +G YM+EVDRVLRPGGYWVLSGPPINWK NYK+W RPKEEL+EEQRKIEEIA  LCWEK+
Sbjct: 286 NGIYMMEVDRVLRPGGYWVLSGPPINWKANYKSWLRPKEELEEEQRKIEEIAKQLCWEKR 345

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEK E+A+WQK V+ ESCR R+DDS   FC+SSDADDVWYKKME CITP P+V GG LK 
Sbjct: 346 SEKAEMAIWQKVVDSESCRRRQDDSSVEFCQSSDADDVWYKKMETCITPTPKVTGGNLKP 405

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP RLYAIPPRI+SGS+PGVS+E+YQ+D+ KWKKHVNAYKK NRLLDSGRYRNIMDMN+G
Sbjct: 406 FPSRLYAIPPRIASGSVPGVSSETYQDDNKKWKKHVNAYKKTNRLLDSGRYRNIMDMNSG 465

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            G FAAAI SS LWVMNVVPT+A+ NTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH
Sbjct: 466 LGSFAAAIHSSNLWVMNVVPTIAEMNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 525

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           G+FSLYKDKCN EDILLEMDRILRPEGA+I RDEVD +IKVKKIVGGMRWDTKMVDHEDG
Sbjct: 526 GVFSLYKDKCNAEDILLEMDRILRPEGAVIFRDEVDVLIKVKKIVGGMRWDTKMVDHEDG 585

Query: 311 PLVPEKILVAVKQYWVASGNST 332
           PLVPEK+LVAVKQYWV +  ST
Sbjct: 586 PLVPEKVLVAVKQYWVTNSTST 607

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074996|gb|ACJ85858.1| unknown [Medicago truncatula]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/324 (80%), Positives = 294/324 (90%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A  LCWEKK
Sbjct: 286 DGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWEKK 345

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEK EIA+WQK  + ESCR+R+DDS   FC+SSD DDVWYKK++ C+TP P+V+GG+LK 
Sbjct: 346 SEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDLKP 405

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP+RLYAIPPR+SSGSIPGVS+E+YQ D+  WKKHVNAYKKIN LLDSGRYRNIMDMNAG
Sbjct: 406 FPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMNAG 465

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIHA+
Sbjct: 466 LGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN 525

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHEDG
Sbjct: 526 GLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHEDG 585

Query: 311 PLVPEKILVAVKQYWVASGNSTSS 334
           PLVPEK+L+AVKQYWV  GNSTS+
Sbjct: 586 PLVPEKVLIAVKQYWVTDGNSTST 609

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516137|ref|XP_003628357.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522379|gb|AET02833.1| hypothetical protein MTR_8g055840 [Medicago truncatula]

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/324 (80%), Positives = 294/324 (90%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A  LCWEKK
Sbjct: 286 DGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWEKK 345

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEK EIA+WQK  + ESCR+R+DDS   FC+SSD DDVWYKK++ C+TP P+V+GG+LK 
Sbjct: 346 SEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDLKP 405

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP+RLYAIPPR+SSGSIPGVS+E+YQ D+  WKKHVNAYKKIN LLDSGRYRNIMDMNAG
Sbjct: 406 FPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMNAG 465

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIHA+
Sbjct: 466 LGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN 525

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHEDG
Sbjct: 526 GLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHEDG 585

Query: 311 PLVPEKILVAVKQYWVASGNSTSS 334
           PLVPEK+L+AVKQYWV  GNSTS+
Sbjct: 586 PLVPEKVLIAVKQYWVTDGNSTST 609

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111282|ref|XP_002315803.1| predicted protein [Populus trichocarpa] gi|222864843|gb|EEF01974.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/330 (79%), Positives = 299/330 (90%), Gaps = 6/330 (1%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYWVLSGPPINWK NY++WQRPKEELQEEQRKIEE A LLCW+KK
Sbjct: 287 DGMYLMEVDRVLRPGGYWVLSGPPINWKNNYRSWQRPKEELQEEQRKIEETAKLLCWDKK 346

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------EVA 124
            E GE+A+WQK++N +SCR R+DDSRA  CKS+D DD WYK+ME C+TPYP      EVA
Sbjct: 347 YENGEMAIWQKRLNADSCRGRQDDSRATLCKSTDTDDAWYKQMEACVTPYPDSGSSDEVA 406

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GG+LK FPERLYA+PPR++SGS+PGVSA++YQ  + +WKKHVNAYKKIN+LLDSGRYRNI
Sbjct: 407 GGQLKVFPERLYAVPPRVASGSVPGVSAKTYQVYNKEWKKHVNAYKKINKLLDSGRYRNI 466

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAG GGFAAA++S KLWVMNVVPT+A+K+TLGVIYERGLIGIYHDWCEAFSTYPRTY
Sbjct: 467 MDMNAGMGGFAAALESPKLWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEAFSTYPRTY 526

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           DLIHA G+FSLYKD+CN+EDILLEMDRILRPEGA+I RDEV+ +IKV+K+VG MRW TKM
Sbjct: 527 DLIHASGVFSLYKDRCNMEDILLEMDRILRPEGAVIFRDEVNVLIKVRKMVGQMRWHTKM 586

Query: 305 VDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
           VDHEDGPLVPEKILVAVKQYWVA GNSTS+
Sbjct: 587 VDHEDGPLVPEKILVAVKQYWVAGGNSTST 616

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516141|ref|XP_003628359.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522381|gb|AET02835.1| hypothetical protein MTR_8g055840 [Medicago truncatula]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/324 (80%), Positives = 294/324 (90%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A  LCWEKK
Sbjct: 78  DGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWEKK 137

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEK EIA+WQK  + ESCR+R+DDS   FC+SSD DDVWYKK++ C+TP P+V+GG+LK 
Sbjct: 138 SEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDLKP 197

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP+RLYAIPPR+SSGSIPGVS+E+YQ D+  WKKHVNAYKKIN LLDSGRYRNIMDMNAG
Sbjct: 198 FPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMNAG 257

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIHA+
Sbjct: 258 LGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN 317

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHEDG
Sbjct: 318 GLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHEDG 377

Query: 311 PLVPEKILVAVKQYWVASGNSTSS 334
           PLVPEK+L+AVKQYWV  GNSTS+
Sbjct: 378 PLVPEKVLIAVKQYWVTDGNSTST 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495984|ref|XP_004160003.1| PREDICTED: probable methyltransferase PMT2-like [Cucumis sativus]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 258/330 (78%), Positives = 299/330 (90%), Gaps = 6/330 (1%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG Y++EVDRVLRPGGYWVLSGPPINWKTNYK+WQRP++EL+EEQRKIE+IA LLCWEKK
Sbjct: 122 DGTYLMEVDRVLRPGGYWVLSGPPINWKTNYKSWQRPRDELEEEQRKIEDIAKLLCWEKK 181

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYP------EVA 124
            EKGEIA+WQK+VN +SC  R+DDSR  FCKS  +DDVWY+KME C+TPYP      EVA
Sbjct: 182 FEKGEIAIWQKRVNADSCPDRQDDSRDIFCKSPVSDDVWYEKMETCVTPYPSVESSDEVA 241

Query: 125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
           GG+LK FP RLY +PPRISSGS+PG+S E+Y ED+NKWK+HV AYKKIN+L+D+GRYRNI
Sbjct: 242 GGKLKTFPSRLYDVPPRISSGSVPGISVEAYHEDNNKWKRHVKAYKKINKLIDTGRYRNI 301

Query: 185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
           MDMNAG G FAAA++SSKLWVMNVVPT+A+KNTLG I+ERGLIGIYHDWCEAFSTYPRTY
Sbjct: 302 MDMNAGLGSFAAALESSKLWVMNVVPTIAEKNTLGAIFERGLIGIYHDWCEAFSTYPRTY 361

Query: 245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
           DLIHAHGLFSLYKDKCN+EDILLEMDRILRPEGA++ RDEVD ++KVKK++GGMRWD KM
Sbjct: 362 DLIHAHGLFSLYKDKCNMEDILLEMDRILRPEGAVVFRDEVDVLVKVKKMIGGMRWDAKM 421

Query: 305 VDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
           VDHEDGPLVPEK+L+AVKQYWV  GN+++S
Sbjct: 422 VDHEDGPLVPEKVLIAVKQYWVVGGNNSTS 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516139|ref|XP_003628358.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522380|gb|AET02834.1| hypothetical protein MTR_8g055840 [Medicago truncatula]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/324 (80%), Positives = 294/324 (90%)

Query: 11  DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKK 70
           DG YM+EVDRVLRPGGYWVLSGPPINWK NYK WQRPKEEL+EEQRKIEE+A  LCWEKK
Sbjct: 183 DGMYMMEVDRVLRPGGYWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWEKK 242

Query: 71  SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPEVAGGELKA 130
           SEK EIA+WQK  + ESCR+R+DDS   FC+SSD DDVWYKK++ C+TP P+V+GG+LK 
Sbjct: 243 SEKAEIAIWQKMTDTESCRSRQDDSSVEFCESSDPDDVWYKKLKACVTPTPKVSGGDLKP 302

Query: 131 FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG 190
           FP+RLYAIPPR+SSGSIPGVS+E+YQ D+  WKKHVNAYKKIN LLDSGRYRNIMDMNAG
Sbjct: 303 FPDRLYAIPPRVSSGSIPGVSSETYQNDNKMWKKHVNAYKKINSLLDSGRYRNIMDMNAG 362

Query: 191 FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH 250
            G FAAAI SSK WVMNVVPT+A+K+TLGVIYERGLIGIYHDWCE FSTYPRTYDLIHA+
Sbjct: 363 LGSFAAAIHSSKSWVMNVVPTIAEKSTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN 422

Query: 251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDG 310
           GLFSLY+DKCN EDILLEMDRILRPEGA+IIRDEVD +IKVKK++GGMRW+ K+VDHEDG
Sbjct: 423 GLFSLYQDKCNTEDILLEMDRILRPEGAVIIRDEVDVLIKVKKLIGGMRWNMKLVDHEDG 482

Query: 311 PLVPEKILVAVKQYWVASGNSTSS 334
           PLVPEK+L+AVKQYWV  GNSTS+
Sbjct: 483 PLVPEKVLIAVKQYWVTDGNSTST 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.964	0.522	0.746	1.3e-141
TAIR|locus:2141035	621	AT4G18030 [Arabidopsis thalian	0.955	0.513	0.654	2e-118
TAIR|locus:2127711	633	AT4G10440 [Arabidopsis thalian	0.943	0.497	0.555	1.5e-99
TAIR|locus:2196651	639	AT1G33170 [Arabidopsis thalian	0.943	0.492	0.538	1.2e-97
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.970	0.511	0.529	1.8e-96
TAIR|locus:2050679	631	AT2G45750 [Arabidopsis thalian	0.943	0.499	0.513	3.9e-92
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.940	0.513	0.493	1.2e-79
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.967	0.535	0.417	2.1e-68
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.973	0.541	0.395	5.8e-66
TAIR|locus:2117733	600	QUA3 "QUASIMODO 3" [Arabidopsi	0.904	0.503	0.409	4.8e-62

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
 Identities = 245/328 (74%), Positives = 283/328 (86%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             DG Y++EVDRVLRPGGYW+LSGPPINWK NYKAWQRP              A LLCWEKK
Sbjct:   288 DGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKK 347

Query:    71 SEKGEIAVWQKKVNDESCRARRDDSRANFCKSSDADDVWYKKMEGCITPYPE------VA 124
              E GEIA+WQK+VNDE+CR+R+DD RANFCK+ D DDVWYKKME CITPYPE      VA
Sbjct:   348 YEHGEIAIWQKRVNDEACRSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVA 407

Query:   125 GGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNI 184
             GGEL+AFP+RL A+PPRISSGSI GV+ ++Y++D+ +WKKHV AYK+IN LLD+GRYRNI
Sbjct:   408 GGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYRNI 467

Query:   185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTY 244
             MDMNAGFGGFAAA++S KLWVMNVVPT+A+KN LGV+YERGLIGIYHDWCEAFSTYPRTY
Sbjct:   468 MDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTY 527

Query:   245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM 304
             DLIHA+ LFSLYK+KCN +DILLEMDRILRPEGA+IIRD+VD +IKVK+I+ GMRWD K+
Sbjct:   528 DLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKL 587

Query:   305 VDHEDGPLVPEKILVAVKQYWVASGNST 332
             VDHEDGPLVPEK+L+AVKQYWV +  ST
Sbjct:   588 VDHEDGPLVPEKVLIAVKQYWVTNSTST 615

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 218/333 (65%), Positives = 255/333 (76%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             +G Y++EVDRVLRPGGYWVLSGPPINWKT +K W R               A  LCWEKK
Sbjct:   287 EGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKK 346

Query:    71 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADDVWYKKMEGCITPYP------EV 123
              EKG+IA+++KK+ND SC R+   D+    CK  D DDVWYK++E C+TP+P      EV
Sbjct:   347 YEKGDIAIFRKKINDRSCDRSTPVDT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEV 402

Query:   124 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 183
             AGG+LK FPERL+A+PP IS G I GV  ESYQED N WKK V  YK+INRL+ S RYRN
Sbjct:   403 AGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRN 462

Query:   184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 243
             +MDMNAG GGFAAA++S K WVMNV+PT+ +KNTL V+YERGLIGIYHDWCE FSTYPRT
Sbjct:   463 VMDMNAGLGGFAAALESPKSWVMNVIPTI-NKNTLSVVYERGLIGIYHDWCEGFSTYPRT 521

Query:   244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303
             YD IHA G+FSLY+  C +EDILLE DRILRPEG +I RDEVD +  V+KIV GMRWDTK
Sbjct:   522 YDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTK 581

Query:   304 MVDHEDGPLVPEKILVAVKQYWVAS--GNSTSS 334
             ++DHEDGPLVPEKILVA KQYWVA   GN++ S
Sbjct:   582 LMDHEDGPLVPEKILVATKQYWVAGDDGNNSPS 614

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 179/322 (55%), Positives = 232/322 (72%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             DG Y++EVDRVLRPGGYW+LSGPPINWK  ++ W+R               A  LCW+K 
Sbjct:   295 DGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKV 354

Query:    71 SEKGEIAVWQKKVNDESCRARRDDSRAN-FCKSSDADDVWYKKMEGCITPYPEV------ 123
             +EKG++++WQK +N   C+  + ++++   C S +AD  WYK +E CITP PE       
Sbjct:   355 TEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDS 414

Query:   124 AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRN 183
             AGG L+ +P+R +A+PPRI  G+IP ++AE ++ED+  WK+ +  YKKI   L  GR+RN
Sbjct:   415 AGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGRFRN 474

Query:   184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRT 243
             IMDMNA  GGFAA++     WVMNVVP  A+K TLGVIYERGLIG Y DWCE FSTYPRT
Sbjct:   475 IMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRT 534

Query:   244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK 303
             YD+IHA GLFSLY+ +C++  ILLEMDRILRPEG +++RD V+ + KV+KIV GM+W ++
Sbjct:   535 YDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQ 594

Query:   304 MVDHEDGPLVPEKILVAVKQYW 325
             +VDHE GP  PEKILVAVK YW
Sbjct:   595 IVDHEKGPFNPEKILVAVKTYW 616

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 174/323 (53%), Positives = 224/323 (69%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             DG Y+ EVDRVLRPGGYW+LSGPPINWK  +K W+R               A  LCW+K 
Sbjct:   312 DGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKV 371

Query:    71 SEKGEIAVWQKKVNDESC-RARRDDSRANFCKSSDADD-VWYKKMEGCITPYPEV----- 123
             +EKG++++WQK +N   C + +R       C  SD  D  WYK +E C+TP PE      
Sbjct:   372 TEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDE 431

Query:   124 -AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYR 182
              AGG L+ +P R +A+PPRI  G+IP ++AE ++ED+  WK+ ++ YK+I   L  GR+R
Sbjct:   432 FAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSRGRFR 491

Query:   183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPR 242
             NIMDMNA  GGFAAA+     WVMNVVP  A+K TLGVI+ERG IG Y DWCE FSTYPR
Sbjct:   492 NIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPR 551

Query:   243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT 302
             TYDLIHA GLFS+Y+++C++  ILLEMDRILRPEG ++ RD V+ + K++ I  GMRW +
Sbjct:   552 TYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKS 611

Query:   303 KMVDHEDGPLVPEKILVAVKQYW 325
             +++DHE GP  PEKIL+AVK YW
Sbjct:   612 RILDHERGPFNPEKILLAVKSYW 634

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 177/334 (52%), Positives = 231/334 (69%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             +G Y+IEVDRVLRPGGYW+LSGPPINW+ ++K W+R               A  LCW K 
Sbjct:   298 NGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKL 357

Query:    71 SEKGEIAVWQKKVNDESCRARRDD-SRANFCKSSDADDVWYKKMEGCITPYPEV------ 123
              ++ ++AVWQK  N   C+  R    R  FC  +  +  WY K+E C+TP PEV      
Sbjct:   358 VQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIK 417

Query:   124 --AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLDSGR 180
               AGG+L  +PERL A+PPRI SGS+ G++ + +  ++ KW++ V+ YKK ++ L ++GR
Sbjct:   418 EVAGGQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGR 477

Query:   181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTY 240
             YRN +DMNA  GGFA+A+    +WVMNVVP  A  NTLGVIYERGLIG Y +WCEA STY
Sbjct:   478 YRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTY 537

Query:   241 PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW 300
             PRTYD IHA  +FSLYKD+C++EDILLEMDRILRP+G++IIRD++D + KVKKI   M+W
Sbjct:   538 PRTYDFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQW 597

Query:   301 DTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
             + ++ DHE+GPL  EKIL  VK+YW A     SS
Sbjct:   598 EGRIGDHENGPLEREKILFLVKEYWTAPAPDQSS 631

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 168/327 (51%), Positives = 226/327 (69%)

Query:    11 DGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKK 70
             DG Y++EVDRVLRPGGYW+LSGPPINW+  +K W+R               A  LCW+K 
Sbjct:   289 DGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKV 348

Query:    71 SEKGEIAVWQKKVNDESCRARRDDSR-ANFCK-SSDADDVWYKKMEGCITPYPEV----- 123
              ++ ++A+WQK  N   C+  R+  +   FC+   D D  WY KM+ C+TP PEV     
Sbjct:   349 VQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAED 408

Query:   124 ----AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKIN-RLLDS 178
                 AGG+++ +P RL AIPPR++ G++  ++ E++ E++  WK+ V+ YKK++ +L ++
Sbjct:   409 LKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGET 468

Query:   179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS 238
             GRYRN++DMNA  GGFAAA+    +WVMNVVP  A  NTLGVIYERGLIG Y +WCEA S
Sbjct:   469 GRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMS 528

Query:   239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM 298
             TYPRTYD IHA  +F+LY+ +C  E+ILLEMDRILRP G +IIRD+VD +IKVK++  G+
Sbjct:   529 TYPRTYDFIHADSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGL 588

Query:   299 RWDTKMVDHEDGPLVPEKILVAVKQYW 325
              W+ ++ DHE GP   EKI  AVKQYW
Sbjct:   589 EWEGRIADHEKGPHEREKIYYAVKQYW 615

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 158/320 (49%), Positives = 203/320 (63%)

Query:     4 VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXAN 63
             V+W  + DG Y++EVDRVLRP GYWVLSGPP+  +  +K  +R                 
Sbjct:   288 VNWTSY-DGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFR 346

Query:    64 LLCWEKKSEKGEIAVWQKKVNDESCRARRDDSR-ANFCKSSDADDVWYKKMEGCITPYPE 122
              LCWEK +E   + +W+K  N   CR R    +    C SSD D  WYK+ME CITP P+
Sbjct:   347 RLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPD 406

Query:   123 VAGGE---LKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRLLDSG 179
             V       LK +PERL  +P R+ +GSI G +   ++ D+N W++ V  Y    + L +G
Sbjct:   407 VNDTNKTVLKNWPERLNHVP-RMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKFLSNG 465

Query:   180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST 239
             +YRN++DMNAG GGFAAA+    +WVMNVVP     NTLGV+Y+RGLIG Y +WCEA ST
Sbjct:   466 KYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALST 525

Query:   240 YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMR 299
             YPRTYDLIHA+G+FSLY DKC+I DILLEM RILRPEGA+IIRD  D ++KVK I   MR
Sbjct:   526 YPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITNQMR 585

Query:   300 WDTKMVDHEDGPLVPEKILV 319
             W+  M   ++       IL+
Sbjct:   586 WNGTMYPEDNSVFDHGTILI 605

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 141/338 (41%), Positives = 204/338 (60%)

Query:     4 VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXAN 63
             + W  F  G Y++E+ R++RPGG+WVLSGPP+N+   ++ W                   
Sbjct:   273 IPWTEFG-GIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLT 331

Query:    64 LLCWEKKSEKGEIAVWQKKVNDESCR---ARRDDSRANFCKSS-DADDVWYKKMEGCIT- 118
              +C++K ++K +IAVWQK ++D+SC    A+  ++    C  S + D  WY  +  C+  
Sbjct:   332 SMCFKKYAQKDDIAVWQK-LSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVA 390

Query:   119 PYPEV--AG-GELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRL 175
             P P+V  +G G +  +PERL+  P RI  G + G SA S + D  KWK  V  YKK+   
Sbjct:   391 PTPKVKKSGLGSIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPA 448

Query:   176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE 235
             L + + RN+MDMN  +GGF+AA+    +WVMNVV + +  N+L V+++RGLIG YHDWCE
Sbjct:   449 LGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYS-ANSLPVVFDRGLIGTYHDWCE 507

Query:   236 AFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIV 295
             AFSTYPRTYDL+H   LF+L   +C ++ ILLEMDRILRP G +IIR+    +  +  + 
Sbjct:   508 AFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLA 567

Query:   296 GGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTS 333
              G+RW  +  + E   +  EKILV  K+ W +S N TS
Sbjct:   568 KGIRWSCRREETEYA-VKSEKILVCQKKLWFSS-NQTS 603

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 134/339 (39%), Positives = 197/339 (58%)

Query:     4 VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXAN 63
             + W  F  G Y++EV R+LRPGG+WVLSGPP+N++  +K W                  +
Sbjct:   267 IPWTEFG-GVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLS 325

Query:    64 LLCWEKKSEKGEIAVWQKKVNDESC--RARRD-DSRANFCKSS-DADDVWYKKMEGCIT- 118
              +C++  ++K +IAVWQK   D  C  +   D D+    C  S + D  WY  +  C+  
Sbjct:   326 SMCFKMYAKKDDIAVWQKSP-DNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVV 384

Query:   119 PYPEVAGGELKA---FPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINRL 175
             P P++   +L++   +PERL+  P RIS   +PG +   ++ D +KWK     YKK+   
Sbjct:   385 PSPKLKKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDSKWKTRAKHYKKLLPA 442

Query:   176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE 235
             + S + RN+MDMN  +GG AAA+ +  LWVMNVV + A  NTL V+++RGLIG YHDWCE
Sbjct:   443 IGSDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCE 501

Query:   236 AFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIV 295
             AFSTYPRTYDL+H  GLF+    +C+++ ++LEMDRILRP G  IIR+       +  + 
Sbjct:   502 AFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVA 561

Query:   296 GGMRWDTKMVDHEDGPLVPEKILVAVKQYWVASGNSTSS 334
               +RW  +    E      EK+L+  K+ W +S  S+ +
Sbjct:   562 KELRWSCRKEQTESAS-ANEKLLICQKKLWYSSNASSET 599

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 135/330 (40%), Positives = 184/330 (55%)

Query:    14 YMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPXXXXXXXXXXXXXXANLLCWEKKSEK 73
             Y IEVDR+LRPGGY V+SGPP+ W    K W                 A  LC+E  +  
Sbjct:   286 YFIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIAVD 334

Query:    74 GEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPEVAG----GEL 128
             G   +W+K V D SC   +++     C  S    D WY K++ C+T    V G    G +
Sbjct:   335 GNTVIWKKPVGD-SCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTI 393

Query:   129 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDM 187
               +PERL  +P R     +     + ++ D+ +W + V  Y+  +N  L S   RN+MDM
Sbjct:   394 SKWPERLTKVPSR---AIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDM 450

Query:   188 NAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLI 247
             NA FGGFAA + S  +WVMNV+P      TL VIY+RGLIG+YHDWCE FSTYPRTYD I
Sbjct:   451 NAFFGGFAATLASDPVWVMNVIPARKPL-TLDVIYDRGLIGVYHDWCEPFSTYPRTYDFI 509

Query:   248 HAHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD 301
             H  G+ SL K       +C++ D+++EMDRILRPEG ++IRD  + + KV ++   +RW 
Sbjct:   510 HVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWS 569

Query:   302 TKMVDHEDGPLVPEKILVAVKQYWVASGNS 331
             + + + E      EKIL+A K  W    NS
Sbjct:   570 SSIHEKEPESHGREKILIATKSLWKLPSNS 599

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0052546 "cell wall pectin metabolic process" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DFI7	PMT2_ARATH	2, ., 1, ., 1, ., -	0.7835	0.9640	0.5227	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	1e-178

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  502 bits (1295), Expect = e-178
 Identities = 186/325 (57%), Positives = 233/325 (71%), Gaps = 16/325 (4%)

Query: 4   VSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIAN 63
           + W    DG  ++EVDRVLRPGGY+VLSGPP+          R +E+LQEE + +E +A 
Sbjct: 192 IPWHAN-DGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQEEWKAMEALAK 242

Query: 64  LLCWEKKSEKGEIAVWQKKVNDESCRARRDDSRANFCKSS-DADDVWYKKMEGCITPYPE 122
            LCW+  ++KG+IA+WQK VN+     R    +   CK S D D  WY  ME CITP PE
Sbjct: 243 SLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPE 302

Query: 123 V----AGGELKAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKKINR-LLD 177
           V     GG L+ +PERL A+PPR++SG I GVSAE+++ D+  WK+ V+ YK++ + L+D
Sbjct: 303 VSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLID 362

Query: 178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF 237
            GR RN+MDMNAGFGGFAAA+    +WVMNVVP     +TL VIY+RGLIGIYHDWCE F
Sbjct: 363 KGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDRGLIGIYHDWCEPF 421

Query: 238 STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG 297
           STYPRTYDL+HA  LFSLYK +CN+EDILLEMDRILRP GA+IIRD+VD + KVKKI   
Sbjct: 422 STYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKA 481

Query: 298 MRWDTKMVDHEDGPLVPEKILVAVK 322
           MRW+ ++ D EDGP  PEKIL+A K
Sbjct: 482 MRWEVRITDTEDGPHDPEKILIAQK 506

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.72
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.71
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.68
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.62
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.59
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.57
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.56
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.53
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.52
PLN02244	340	tocopherol O-methyltransferase	99.52
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.52
PRK05785	226	hypothetical protein; Provisional	99.51
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.5
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.49
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.48
PRK11207	197	tellurite resistance protein TehB; Provisional	99.48
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.47
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.46
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.46
PRK12335	287	tellurite resistance protein TehB; Provisional	99.46
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.45
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.43
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.43
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.42
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.42
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.41
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.39
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.39
PRK08317	241	hypothetical protein; Provisional	99.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.38
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.37
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.37
PRK06202	232	hypothetical protein; Provisional	99.36
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.36
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.34
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.33
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.31
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.31
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.3
PLN02336	475	phosphoethanolamine N-methyltransferase	99.29
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.29
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.28
PLN02490	340	MPBQ/MSBQ methyltransferase	99.27
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.27
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.27
PRK06922	677	hypothetical protein; Provisional	99.27
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.27
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.25
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.24
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.24
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.22
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.22
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.2
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.2
PRK14968	188	putative methyltransferase; Provisional	99.19
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.18
TIGR00438	188	rrmJ cell division protein FtsJ.	99.17
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.16
PRK04266	226	fibrillarin; Provisional	99.16
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.15
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.15
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.15
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.13
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.12
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.11
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.1
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.1
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.09
KOG4300	252	consensus Predicted methyltransferase [General fun	99.08
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.08
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.08
TIGR03438	301	probable methyltransferase. This model represents	99.07
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.04
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.01
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.01
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.01
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.0
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.0
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.99
KOG3010	261	consensus Methyltransferase [General function pred	98.99
PLN03075	296	nicotianamine synthase; Provisional	98.99
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.97
PRK14967	223	putative methyltransferase; Provisional	98.97
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.97
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.96
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.96
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.94
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.93
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.93
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.92
PRK07402	196	precorrin-6B methylase; Provisional	98.92
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.9
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.9
COG4123	248	Predicted O-methyltransferase [General function pr	98.89
KOG2361	264	consensus Predicted methyltransferase [General fun	98.88
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.87
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.85
PTZ00146	293	fibrillarin; Provisional	98.85
COG2890	280	HemK Methylase of polypeptide chain release factor	98.85
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.82
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.79
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.78
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.73
PRK04457	262	spermidine synthase; Provisional	98.72
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.7
PRK00811	283	spermidine synthase; Provisional	98.69
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.65
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.65
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.64
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.63
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.62
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.61
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.61
PRK01581	374	speE spermidine synthase; Validated	98.59
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.59
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.57
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.57
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.55
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.52
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.5
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.5
PLN02366	308	spermidine synthase	98.5
PHA03411	279	putative methyltransferase; Provisional	98.49
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.48
KOG1271	227	consensus Methyltransferases [General function pre	98.48
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.47
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.46
PRK03612	521	spermidine synthase; Provisional	98.46
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.46
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.45
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.43
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.42
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.41
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.39
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.36
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.34
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.33
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.28
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.27
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.25
PHA03412	241	putative methyltransferase; Provisional	98.25
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.24
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.22
KOG2940	325	consensus Predicted methyltransferase [General fun	98.18
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.18
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.14
PRK04148	134	hypothetical protein; Provisional	98.13
COG2521	287	Predicted archaeal methyltransferase [General func	98.12
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.12
PLN02672	1082	methionine S-methyltransferase	98.11
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.1
KOG1331	293	consensus Predicted methyltransferase [General fun	98.09
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.08
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.08
PLN02476	278	O-methyltransferase	98.07
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.05
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.01
COG4122	219	Predicted O-methyltransferase [General function pr	97.98
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.95
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.93
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.91
KOG2904	328	consensus Predicted methyltransferase [General fun	97.85
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.8
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.8
KOG2899	288	consensus Predicted methyltransferase [General fun	97.79
PLN02823	336	spermine synthase	97.76
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.73
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.65
PRK00536	262	speE spermidine synthase; Provisional	97.61
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.6
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.56
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.47
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.42
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.4
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.37
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.36
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.35
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.33
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.32
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.3
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.29
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.28
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.26
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.25
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.18
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.18
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.13
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.13
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.12
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.09
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.04
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.02
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.0
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.0
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.99
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.98
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.92
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.91
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.79
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.72
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.63
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.59
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.43
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.36
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.32
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.31
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.18
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.14
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.03
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.96
PF13679	141	Methyltransf_32: Methyltransferase domain	95.95
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.89
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.81
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	95.66
PRK13699	227	putative methylase; Provisional	95.59
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.08
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.07
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.98
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.91
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.83
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.75
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	94.65
COG0742	187	N6-adenine-specific methylase [DNA replication, re	94.64
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.62
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.47
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.24
COG3897	218	Predicted methyltransferase [General function pred	94.15
KOG3115	249	consensus Methyltransferase-like protein [General	94.12
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	94.03
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	93.82
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	93.74
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.68
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	93.62
COG4798	238	Predicted methyltransferase [General function pred	93.58
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	93.51
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	93.4
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.26
COG2520	341	Predicted methyltransferase [General function pred	93.24
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.22
PRK11524	284	putative methyltransferase; Provisional	93.19
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.6
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.03
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.18
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.17
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	91.07
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	90.66
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.65
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	89.68
COG4262	508	Predicted spermidine synthase with an N-terminal m	88.82
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	88.75
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	88.53
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	88.14
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	87.8
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	87.37
COG4076	252	Predicted RNA methylase [General function predicti	87.33
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	86.95
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	86.58
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	85.4
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	85.02
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.72
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.32
PHA01634	156	hypothetical protein	82.69
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	81.89
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	81.15
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	81.02
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	80.56
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	80.54

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=1.6e-102  Score=779.22  Aligned_cols=310  Identities=60%  Similarity=1.104  Sum_probs=297.9

Q ss_pred             eeeeceecCCceeeEeecccccCCceEEEecCCCCccccccccCCChHHHHHHHHHHHHHHHhhcccccceecceEEEEc
Q 019879            2 VTVSWIIFADGRYMIEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEIAVWQK   81 (334)
Q Consensus         2 ~~v~w~~~~~g~~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~~iw~K   81 (334)
                      ..|+|+ ++||+||+||||||||||||||||||||        +|++++++++|++|++||++|||++|++++|||||||
T Consensus       190 c~i~W~-~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqK  260 (506)
T PF03141_consen  190 CLIPWH-PNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQK  260 (506)
T ss_pred             ccccch-hcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEec
Confidence            469996 9999999999999999999999999995        5678899999999999999999999999999999999


Q ss_pred             cCCCccccc-ccCCCCCCCCC-CCCCCchhhhcCccccccCcc----CCCCccCCCcccccCCCCCccCCCCCCCCcccc
Q 019879           82 KVNDESCRA-RRDDSRANFCK-SSDADDVWYKKMEGCITPYPE----VAGGELKAFPERLYAIPPRISSGSIPGVSAESY  155 (334)
Q Consensus        82 p~~~~~c~~-~~~~~~p~~C~-~~~~d~~wy~~l~~Ci~~~p~----~~~~~~~~wP~Rl~~~p~~l~~~~~~g~~~e~f  155 (334)
                      |.|| +||. |+..+.||+|+ ++|||++||+||++||+|+|+    .+++.+++||+||+++|+||+++++.|.+++.|
T Consensus       261 p~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F  339 (506)
T PF03141_consen  261 PTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEF  339 (506)
T ss_pred             cCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHH
Confidence            9997 9999 56669999999 889999999999999999994    578889999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHh-hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc
Q 019879          156 QEDSNKWKKHVNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC  234 (334)
Q Consensus       156 ~~d~~~W~~~v~~y~~ll~-~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~  234 (334)
                      .+|++.|+++|++|+.++. .|+++++||||||++|+|||||+|.++++|||||+|++.. ++|.++++|||||+|||||
T Consensus       340 ~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~-ntL~vIydRGLIG~yhDWC  418 (506)
T PF03141_consen  340 KEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGP-NTLPVIYDRGLIGVYHDWC  418 (506)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCC-Ccchhhhhcccchhccchh
Confidence            9999999999999998887 7899999999999999999999999999999999999665 9999999999999999999


Q ss_pred             ccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCC
Q 019879          235 EAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVP  314 (334)
Q Consensus       235 e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~  314 (334)
                      |+|+|||+|||||||+++|+++.++|+++++|.||||||||||++||+|..+++.+|++++++|||+++++|+|+|++++
T Consensus       419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~  498 (506)
T PF03141_consen  419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGP  498 (506)
T ss_pred             hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEe
Q 019879          315 EKILVAVK  322 (334)
Q Consensus       315 e~~l~~~K  322 (334)
                      |++|||||
T Consensus       499 EkiL~~~K  506 (506)
T PF03141_consen  499 EKILICQK  506 (506)
T ss_pred             ceEEEEEC
Confidence            99999998

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.93  E-value=1.5e-26  Score=232.63  Aligned_cols=200  Identities=16%  Similarity=0.287  Sum_probs=153.8

Q ss_pred             cCccccccCccCCCCccCCCcccccCC------CCCccCCCCCCC------C--ccccchhhhhhHHHHHHHHHHHh-hc
Q 019879          112 KMEGCITPYPEVAGGELKAFPERLYAI------PPRISSGSIPGV------S--AESYQEDSNKWKKHVNAYKKINR-LL  176 (334)
Q Consensus       112 ~l~~Ci~~~p~~~~~~~~~wP~Rl~~~------p~~l~~~~~~g~------~--~e~f~~d~~~W~~~v~~y~~ll~-~l  176 (334)
                      ....|+.|.|.. ...+.+||+....+      .++|++  .++.      .  .-.|......|...+.+|.+.+. .|
T Consensus        33 ~~~~CLVp~P~g-Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~  109 (506)
T PF03141_consen   33 ERLRCLVPPPKG-YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMI  109 (506)
T ss_pred             CCCccccCCCcc-CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHh
Confidence            356799999953 55678999987533      444443  1211      1  22577778888888999976544 23


Q ss_pred             ----CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc-ccCCCCC-CccceEEec
Q 019879          177 ----DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-EAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       177 ----~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~-e~l~~yp-~sFDlVha~  250 (334)
                          ..+.+|.+||+|||+|+|+++|+++++.+|.+.+-|.++..+++|.+||+...+.... ..| ||| ++||+|||+
T Consensus       110 ~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rL-Pfp~~~fDmvHcs  188 (506)
T PF03141_consen  110 PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRL-PFPSNAFDMVHCS  188 (506)
T ss_pred             hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccc-cCCccchhhhhcc
Confidence                5578999999999999999999999999999999999999999999999866544332 344 666 999999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVA  320 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~  320 (334)
                      ..+......  -..+|.|++|||||||+|+++.++          +.+++|++++++|||+....        +..+.|+
T Consensus       189 rc~i~W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~--------~~~~aIw  258 (506)
T PF03141_consen  189 RCLIPWHPN--DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE--------KGDTAIW  258 (506)
T ss_pred             cccccchhc--ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee--------eCCEEEE
Confidence            777543211  246999999999999999998642          46788999999999998763        3459999


Q ss_pred             Eeccc
Q 019879          321 VKQYW  325 (334)
Q Consensus       321 ~K~~w  325 (334)
                      ||+.=
T Consensus       259 qKp~~  263 (506)
T PF03141_consen  259 QKPTN  263 (506)
T ss_pred             eccCC
Confidence            99763

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.72  E-value=2.3e-17  Score=154.45  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=85.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ++.+|||+|||||.+|..+++... ...|+++|+|++||..+.+|-.      +...+..++.+| || +|||+|.+++.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg  128 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG  128 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence            568999999999999999998632 4689999999999999998843      223455677775 77 99999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      |.++.   +++.+|+||+|||||||.+++.+..
T Consensus       129 lrnv~---d~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         129 LRNVT---DIDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             hhcCC---CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            98765   6899999999999999999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.71  E-value=2.1e-17  Score=128.23  Aligned_cols=91  Identities=23%  Similarity=0.374  Sum_probs=72.3

Q ss_pred             eeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc---hhhhhcccCCCCC-CccceEEechhhccccCcC
Q 019879          185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG---IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC  260 (334)
Q Consensus       185 LD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~---~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c  260 (334)
                      ||+|||+|.++..|++++.  .+|+++|.++++++.+.++....   ......+.+ +++ ++||+|++.++|+|+   .
T Consensus         1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~---~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL---E   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---S
T ss_pred             CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---c
Confidence            8999999999999999822  58999999999999988875322   333334455 566 999999999999997   4


Q ss_pred             CHHHHHHHHHHhhcCCeEEEE
Q 019879          261 NIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       261 ~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +...+++|+.|+|||||+++|
T Consensus        75 ~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCcCeEEeC
Confidence            689999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.68  E-value=8.7e-17  Score=149.89  Aligned_cols=117  Identities=20%  Similarity=0.294  Sum_probs=76.2

Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c--cchhhh
Q 019879          159 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L--IGIYHD  232 (334)
Q Consensus       159 ~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l--i~~~~d  232 (334)
                      .+.|++.+...      +...+..+|||+|||||.++..|+++-.....|+++|+|++||+.+.+|.    .  +.....
T Consensus        32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~  105 (233)
T PF01209_consen   32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG  105 (233)
T ss_dssp             -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred             HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence            35677655432      23334579999999999999999875222347999999999999988762    2  233444


Q ss_pred             hcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          233 WCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       233 ~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      .++.+ ||+ ++||+|.|++.|+++.   +...+|.||+|||||||.++|-|..
T Consensus       106 da~~l-p~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  106 DAEDL-PFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             BTTB---S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CHHHh-cCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeecc
Confidence            45666 566 9999999999888764   5889999999999999999998753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.62  E-value=1.9e-15  Score=142.53  Aligned_cols=100  Identities=18%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc---------cchhhhhcccCCCCC-CccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl---------i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      ...+|||+|||+|.++..|.++ +.. .+|+++|+|++|++.+.+|..         +......++.+ +|+ ++||+|+
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~  150 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT  150 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence            4579999999999999888774 211 379999999999999876521         12223334455 566 8999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++++++|+.   ++..+|.|+.|+|||||.+++.|.
T Consensus       151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             EecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence            999998875   578999999999999999999874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.60  E-value=1e-14  Score=135.40  Aligned_cols=105  Identities=16%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEec
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      +..+......+|||+|||+|.++..|.+.+   ..|+++|+|++|++.+.++.. ........+.+ +++ ++||+|+++
T Consensus        35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~  110 (251)
T PRK10258         35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSN  110 (251)
T ss_pred             HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEEC
Confidence            334554456799999999999999998875   369999999999999888753 12222223444 455 899999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .++++..   ++..+|.|+.|+|||||.++++..
T Consensus       111 ~~l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        111 LAVQWCG---NLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             chhhhcC---CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            8887643   578999999999999999999864

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.59  E-value=5.5e-15  Score=137.96  Aligned_cols=107  Identities=13%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879          171 KINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       171 ~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      .++..+......+|||+|||+|.++..|.++.. ...|+++|+|+.|++.+.++++. ......+.+ +.+++||+|+|+
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~-~~~~~fD~v~~~   96 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVD-ARTGDVRDW-KPKPDTDVVVSN   96 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCc-EEEcChhhC-CCCCCceEEEEe
Confidence            355555555568999999999999999988621 24699999999999999887642 222223333 223899999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+|+|++   +...++.++.|+|||||.+++..
T Consensus        97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         97 AALQWVP---EHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence            9999975   46899999999999999999974

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.57  E-value=7.6e-15  Score=143.01  Aligned_cols=100  Identities=13%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c---cchhhhhcccCCCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l---i~~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.+   .+|+++|.++.|++.++++.    +   +...+..++.++..+++||+|+|..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            34689999999999999998876   47999999999999887652    1   12222333455433389999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      |+|+.   +...+|.|+.|+|||||.+++.+..
T Consensus       208 LeHv~---d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        208 IEHVA---NPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             HHhcC---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99986   4789999999999999999998754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.56  E-value=3.5e-15  Score=126.89  Aligned_cols=97  Identities=22%  Similarity=0.400  Sum_probs=76.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ....+|||+|||+|.++..|.+.+.   .++++|+++.+++.   +.......+  ...+.++ ++||+|+|+.+|+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~   92 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP   92 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc
Confidence            3457999999999999999988875   79999999888877   221111110  1122334 9999999999999986


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                         ++..+|.++.|+|||||++++.+...
T Consensus        93 ---d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   93 ---DPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             ---HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             ---cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence               48999999999999999999998753

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.53  E-value=2.1e-14  Score=116.10  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             CceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccC---CCCCCccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAF---STYPRTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l---~~yp~sFDlVha~~  251 (334)
                      ..+|||+|||+|.++..|++  .+   ..|+++|.++.|++.+.++-    ......-.+.++   ......||+|++..
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            36899999999999999998  55   36999999999999887763    211111111222   33447899999998


Q ss_pred             -hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 -LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 -vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                       .++++.+..+...++.++.+.|||||++++++.
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence             445443334567899999999999999999863

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=5.2e-14  Score=131.56  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-Cc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RT  243 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~s  243 (334)
                      ++..+. ....+|||+|||+|.++..|++.+   .+|+++|+|++|++.+.++    |+.   ...+...+.+++++ ++
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence            344343 345799999999999999999986   4799999999999988765    321   12222223344444 89


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||+|+|+.+|+|+.   ++..+|.++.|+|||||.+++..
T Consensus       113 fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        113 VDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             CCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence            99999999999875   46799999999999999998864

>PLN02244 tocopherol O-methyltransferase

Probab=99.52  E-value=7.4e-14  Score=136.48  Aligned_cols=99  Identities=19%  Similarity=0.212  Sum_probs=77.3

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-CccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ....+|||+|||+|.++..|+++.  ..+|+++|+|+.|++.+.++    |+.   ......++.+ +|+ ++||+|++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence            345789999999999999998852  24799999999999876553    432   2222223333 466 999999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+++|+.   +...+|.|+.|+|||||.|+|.+
T Consensus       194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999875   46899999999999999999975

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.52  E-value=4.3e-13  Score=121.34  Aligned_cols=152  Identities=14%  Similarity=0.272  Sum_probs=103.7

Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhh
Q 019879          160 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDW  233 (334)
Q Consensus       160 ~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~  233 (334)
                      ..|++.+-.-..+...++.  ..+|||+|||+|.++..++... ....|+++|.++.|++.+.++    ++  +...+..
T Consensus        27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d  103 (187)
T PRK00107         27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR  103 (187)
T ss_pred             HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence            4677777443323333443  5789999999999888887531 124799999999999876543    33  2223333


Q ss_pred             cccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE-Eec-CCCCC
Q 019879          234 CEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK-MVD-HEDGP  311 (334)
Q Consensus       234 ~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~-~~~-~~~~~  311 (334)
                      ++.+.. +++||+|+|+.+       .+++.++.++.|+|||||.+++.+.......+..+...+.|.+. .+. +..|-
T Consensus       104 ~~~~~~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  175 (187)
T PRK00107        104 AEEFGQ-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGL  175 (187)
T ss_pred             HhhCCC-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCC
Confidence            344433 579999999742       34788999999999999999999888777888899898899854 222 23333


Q ss_pred             CCCceEEEEEe
Q 019879          312 LVPEKILVAVK  322 (334)
Q Consensus       312 ~~~e~~l~~~K  322 (334)
                      .+.-.+.|-||
T Consensus       176 ~~~~~~~~~~~  186 (187)
T PRK00107        176 DGERHLVIIRK  186 (187)
T ss_pred             CCcEEEEEEec
Confidence            23334455555

>PRK05785 hypothetical protein; Provisional

Probab=99.51  E-value=1.1e-13  Score=128.01  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=74.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ..+|||+|||||.++..|++..  ..+|+++|.|++|++.+.++.-  ..+..++.+ ||+ ++||+|+++.+++|+.  
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l-p~~d~sfD~v~~~~~l~~~~--  124 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFEAL-PFRDKSFDVVMSSFALHASD--  124 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechhhC-CCCCCCEEEEEecChhhccC--
Confidence            4799999999999999998863  1479999999999999887642  233344565 566 9999999999998754  


Q ss_pred             CCHHHHHHHHHHhhcCCe-EEEEE
Q 019879          260 CNIEDILLEMDRILRPEG-AIIIR  282 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG-~lii~  282 (334)
                       +++.+|+||+|||||.+ .+.++
T Consensus       125 -d~~~~l~e~~RvLkp~~~ile~~  147 (226)
T PRK05785        125 -NIEKVIAEFTRVSRKQVGFIAMG  147 (226)
T ss_pred             -CHHHHHHHHHHHhcCceEEEEeC
Confidence             58999999999999964 33343

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.50  E-value=9.8e-14  Score=125.30  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=73.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-ch-hhhhcccCCCCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GI-YHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~-~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|++++   ..|+++|+|+.|++.+.++    ++. .. ..+ ... .+++++||+|+++.+|
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d-~~~-~~~~~~fD~I~~~~~~  104 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYD-INA-AALNEDYDFIFSTVVF  104 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEecc-chh-ccccCCCCEEEEeccc
Confidence            35799999999999999999876   3699999999999876543    331 11 111 111 2345789999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +|+. ..+...++.+++|+|||||++++.
T Consensus       105 ~~~~-~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       105 MFLQ-AGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ccCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence            8864 345789999999999999986554

Part of a tellurite-reducing operon tehA and tehB

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.49  E-value=1.2e-13  Score=130.46  Aligned_cols=109  Identities=17%  Similarity=0.244  Sum_probs=81.3

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-Cccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDl  246 (334)
                      ++..+.-....+|||+|||+|.++..|+...  ...|+++|+|++|+..+.++..    +......+.. .+|+ ++||+
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~  120 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDM  120 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEE
Confidence            3444444455799999999999998887642  2479999999999998887632    1122211222 2566 89999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++..++.|.. ..+...+|+++.|+|||||.|++.|.
T Consensus       121 V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        121 IYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99998888864 23678999999999999999999875

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.48  E-value=2e-13  Score=128.43  Aligned_cols=122  Identities=19%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCC-----CcEEEEEeccCChhhHHHHHHcC----ccc-----hhhhhcccCCCCC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSK-----LWVMNVVPTLADKNTLGVIYERG----LIG-----IYHDWCEAFSTYP  241 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~-----v~v~nVv~vD~s~~~L~~a~~Rg----li~-----~~~d~~e~l~~yp  241 (334)
                      +.+....+||||+||||-.|-.+.+.-     -...+|+..|++++||.++.+|.    +-.     .....+|++| ||
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd  174 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD  174 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence            344566899999999999988887742     12268999999999999887774    311     1223456775 88


Q ss_pred             -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccce
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWD  301 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~  301 (334)
                       ++||+.+..+-+   .+..+++++|+|++|||||||.|.+-+...+- +-|+.+++.--.+
T Consensus       175 d~s~D~yTiafGI---RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~  233 (296)
T KOG1540|consen  175 DDSFDAYTIAFGI---RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD  233 (296)
T ss_pred             CCcceeEEEecce---ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence             999999887544   44557999999999999999999998865532 4555555544333

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=1.6e-13  Score=124.11  Aligned_cols=97  Identities=16%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|++++.   +|+++|.|+.|++.+.++    ++.. ....+.++.  +++++||+|+|+.+|
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~  105 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVL  105 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecch
Confidence            457999999999999999999863   799999999999876543    3311 111112222  345789999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +|+. ..+...++.++.|+|||||++++
T Consensus       106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        106 MFLE-AKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             hhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence            8764 34678999999999999999655

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.47  E-value=2.5e-13  Score=124.10  Aligned_cols=105  Identities=16%  Similarity=0.246  Sum_probs=78.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++.-....+|+++|.+++|++.+.++    ++  +...+..++.+ +++ ++||+|+
T Consensus        41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~  119 (231)
T TIGR02752        41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVT  119 (231)
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEE
Confidence            3333457999999999999999987411124799999999999877654    22  12222223333 456 8999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++.+++|+.   +...+|.|+.|+|||||.+++.+.
T Consensus       120 ~~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       120 IGFGLRNVP---DYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EecccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            998888764   467899999999999999999764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00452 methyltransferase, putative

Probab=99.46  E-value=4e-13  Score=130.61  Aligned_cols=121  Identities=15%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             cchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--c--Cc---c
Q 019879          155 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GL---I  227 (334)
Q Consensus       155 f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--R--gl---i  227 (334)
                      |.-++ .|+..+. |..++..+.....++|||+|||+|.++..++..+..  .|+++|.|+.|+..+..  +  +.   +
T Consensus        98 ~~~~~-e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v  173 (314)
T TIGR00452        98 IKIDS-EWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRA  173 (314)
T ss_pred             ccCCH-HHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence            43333 3544443 222444444455689999999999999998887642  58999999888864321  1  11   1


Q ss_pred             chhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          228 GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       228 ~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .....-.+.++ ...+||+|+|+.+++|..   ++..+|.|++|+|||||.|++.+
T Consensus       174 ~~~~~~ie~lp-~~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       174 ILEPLGIEQLH-ELYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEECCHHHCC-CCCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence            11111123343 346899999999999964   57899999999999999999864

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=2.9e-13  Score=131.70  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=77.5

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--c--Cc---cchhhhhcccCCCCCCccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--R--GL---IGIYHDWCEAFSTYPRTYD  245 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--R--gl---i~~~~d~~e~l~~yp~sFD  245 (334)
                      +..++....++|||+|||+|.++..|+..+..  .|+++|.|+.|+..+..  +  +.   +.......+.++. +++||
T Consensus       115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD  191 (322)
T PRK15068        115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFD  191 (322)
T ss_pred             HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcC
Confidence            33444445589999999999999999987642  49999999888764321  1  11   1122222344543 78999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+|..+++|..   ++..+|.+++|+|||||.+++.+
T Consensus       192 ~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        192 TVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             EEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            999999999864   57899999999999999999864

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.46  E-value=6.5e-13  Score=126.67  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=84.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|++++   .+|+++|.|+.+++.+.++    ++ . ....+.++.  .++++||+|+++.+|+
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~  195 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLM  195 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhh
Confidence            4689999999999999999887   3799999999998876543    43 1 111111221  2368999999999998


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEe---Ch--------h---hHHHHHHHHhcccceEEEe
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRD---EV--------D---EIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D---~~--------~---~~~~i~~~~~~l~W~~~~~  305 (334)
                      |+. ..++..++.+|.|+|||||++++..   ..        .   .-.++++.+..  |++..+
T Consensus       196 ~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        196 FLN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence            874 3567899999999999999966532   10        1   12456666665  887765

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=2.4e-14  Score=114.32  Aligned_cols=91  Identities=22%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             eeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhccc-CCCCC-CccceEEechhhccc
Q 019879          185 MDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEA-FSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       185 LD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~-l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ||+|||+|.++..|+++. ....++++|+|+.|++.+++|    +..  ........+ +...+ ++||+|+++.+|+|+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            799999999999998863 347899999999999655544    110  011100111 12223 699999999999998


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAI  279 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~l  279 (334)
                         .++..+++.+.++|||||.|
T Consensus        80 ---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---hhHHHHHHHHHHHcCCCCCC
Confidence               46899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=6.1e-13  Score=123.80  Aligned_cols=107  Identities=13%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEEec
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      ++..+......+|||+|||+|.++..|++.. -..+|+++|.|+.|+..+.++.- +.......+.+ ..+++||+|+|+
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~  100 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASW-QPPQALDLIFAN  100 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-CCCCCccEEEEc
Confidence            4444444456899999999999999998752 12479999999999998877631 11222112222 223799999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+|+|+.   +...+|.++.|+|||||.+++..
T Consensus       101 ~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        101 ASLQWLP---DHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             cChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence            9999875   46899999999999999999964

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.43  E-value=3.2e-13  Score=126.09  Aligned_cols=103  Identities=7%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|++. ..-...|+++|.|++|++.+.++    ++.....-.+.++..++ ..||+|+++.+++
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~  136 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ  136 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence            478999999999998888762 11124799999999999988775    22111111122232334 5699999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+.+ .+...++.+++|+|||||.|++.|.
T Consensus       137 ~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        137 FLEP-SERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             hCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            8753 4467899999999999999999974

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.42  E-value=4.4e-13  Score=125.19  Aligned_cols=100  Identities=14%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-----hhhhhcccCCCCC-CccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-----IYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-----~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ...+|||+|||-|.++..|++.|   .+|+++|+++.+++.|..+.+..     ....-.|++. .. ++||+|+|.-|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVl  134 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHH
Confidence            45799999999999999999998   47999999999999988654321     1111123332 33 799999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +|+++   ++.+++++.+.+||||.+++++..+
T Consensus       135 EHv~d---p~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         135 EHVPD---PESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             HccCC---HHHHHHHHHHHcCCCcEEEEecccc
Confidence            99874   7889999999999999999998654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.42  E-value=2.6e-12  Score=116.09  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCCCCCccceEEechhhccccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ..+|||+|||+|.++..|++.+.. ..++++|.++.++..+.++..  +.......+.++..+++||+|+++++++|.. 
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~-  112 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-  112 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence            468999999999999999886432 358999999999988877642  1122222334433348999999999999864 


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                        ++..+|.++.|+|||||.+++.+.
T Consensus       113 --~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       113 --DLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             --CHHHHHHHHHHHcCCCcEEEEEeC
Confidence              478999999999999999999864

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00740 methyltransferase, putative

Probab=99.41  E-value=4.5e-13  Score=123.82  Aligned_cols=104  Identities=8%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             CCceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|+++. ....+++++|.|++|+..+.++    +......-.+.++..++ ..||+|++++++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l  132 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  132 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence            34689999999999998887741 1124799999999999988765    11101111112222333 569999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+.+ .+...+|.+++|+|||||.|+++|.
T Consensus       133 ~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       133 QFLPP-EDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             hhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence            98752 3567999999999999999999985

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.41  E-value=1.4e-12  Score=123.57  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             ccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccH----HHHHHHhCC----CcEEEEEeccCChhhHHHHH
Q 019879          152 AESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGG----FAAAIQSSK----LWVMNVVPTLADKNTLGVIY  222 (334)
Q Consensus       152 ~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~----faa~L~~~~----v~v~nVv~vD~s~~~L~~a~  222 (334)
                      ...|-.|...|......... ++.........+|+|+|||+|.    +|..|.+..    .+...|+++|+|+.||+.|.
T Consensus        70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar  149 (264)
T smart00138       70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR  149 (264)
T ss_pred             CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence            34677777888776655322 2222222345799999999996    555565532    12457999999999999887


Q ss_pred             HcC--------cc-------------------------c-hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHH
Q 019879          223 ERG--------LI-------------------------G-IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILL  267 (334)
Q Consensus       223 ~Rg--------li-------------------------~-~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~  267 (334)
                      +.-        +.                         . ..+|..+  ++++ ++||+|+|.++|+|+. ..+...++.
T Consensus       150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~  226 (264)
T smart00138      150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLN  226 (264)
T ss_pred             cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHHH
Confidence            531        00                         0 0122222  2344 8999999999999885 345678999


Q ss_pred             HHHHhhcCCeEEEEEeCh
Q 019879          268 EMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       268 Em~RVLRPGG~lii~D~~  285 (334)
                      +++|+|+|||+|++....
T Consensus       227 ~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      227 RFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             HHHHHhCCCeEEEEECcc
Confidence            999999999999997653

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=9.5e-13  Score=133.16  Aligned_cols=100  Identities=20%  Similarity=0.327  Sum_probs=77.4

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c---cchhhhhcccCCCCC-CccceEEechh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L---IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l---i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ....+|||+|||+|.++..|++..  ..+|+++|+|+.++..+.++.  +   +......+.. .+++ ++||+|+|..+
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~s~~~  341 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK-KTYPDNSFDVIYSRDT  341 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc-CCCCCCCEEEEEECCc
Confidence            345799999999999998888753  247999999999999887652  2   1121111222 3466 89999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|+.   +.+.+|.|++|+|||||.+++.|.
T Consensus       342 l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        342 ILHIQ---DKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             ccccC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99975   478999999999999999999863

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.39  E-value=9.2e-13  Score=113.43  Aligned_cols=102  Identities=20%  Similarity=0.370  Sum_probs=76.8

Q ss_pred             CCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCC-CCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFST-YPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~-yp~sFDlVha~~  251 (334)
                      +..+|||+|||+|.++..|++ .+. ..+++++|.+++|++.+..+    ++.  ...+...+.++. +++.||+|+++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            347899999999999999994 221 24699999999999988774    432  222222222321 448999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +++|+.   +...+|+++.|.|+|||.+++.+..
T Consensus        82 ~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFP---DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            998764   4678999999999999999999876

...

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.39  E-value=1.8e-13  Score=110.17  Aligned_cols=93  Identities=18%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             EeeecccccHHHHHHHhCC--CcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEec-hhhcc
Q 019879          184 IMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAH-GLFSL  255 (334)
Q Consensus       184 VLD~GCG~G~faa~L~~~~--v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~-~vfs~  255 (334)
                      |||+|||+|..+..+.+..  .....++++|++++|+..++++.    . +..++..++.++...++||+|+|+ .+|+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999998752  11157999999999999988875    2 122332233333233899999995 55888


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCe
Q 019879          256 YKDKCNIEDILLEMDRILRPEG  277 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG  277 (334)
                      +. ..+++.+|.++.++|||||
T Consensus        81 ~~-~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LS-PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SS-HHHHHHHHHHHHHTEEEEE
T ss_pred             CC-HHHHHHHHHHHHHHhCCCC
Confidence            64 4678999999999999998

>PRK08317 hypothetical protein; Provisional

Probab=99.38  E-value=2.9e-12  Score=115.46  Aligned_cols=104  Identities=21%  Similarity=0.345  Sum_probs=78.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--Cc---cchhhhhcccCCCCC-CccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GL---IGIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--gl---i~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      +......+|||+|||+|.++..+++......+++++|.++.++..+.++  +.   +.......+.+ +++ ++||+|++
T Consensus        15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~   93 (241)
T PRK08317         15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRS   93 (241)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEE
Confidence            3444457999999999999999887521124799999999999988776  11   11111111222 355 89999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ..+|+|+.   +...++.++.++|||||.+++.+
T Consensus        94 ~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         94 DRVLQHLE---DPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             echhhccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence            99999875   47899999999999999999875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.38  E-value=1.6e-12  Score=124.03  Aligned_cols=108  Identities=18%  Similarity=0.313  Sum_probs=74.5

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHH----HcCccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIY----ERGLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~----~Rgli~~~~d~~e~l~~yp~sFDl  246 (334)
                      ++..+.-....+|||+|||.|+++.+++++ |   .+|+++.+|+++.+.+.    ++|+.....-.+.++..++.+||.
T Consensus        54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~  130 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDR  130 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SE
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCE
Confidence            444334345589999999999999999997 6   47899999999888665    446533222222333345579999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |++-.+|+|+. ..+...++.+++|+|||||.+++..
T Consensus       131 IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  131 IVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999999985 3568899999999999999999864

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.38  E-value=3.2e-12  Score=120.81  Aligned_cols=104  Identities=14%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCC--cEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKL--WVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v--~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      ...+|||+|||+|.++..|++...  ....|+++|+|+.|+..|.++.. +.......+.+ |++ ++||+|++..  . 
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~~--~-  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRIY--A-  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEec--C-
Confidence            346899999999999999876421  11368999999999999887642 22222222344 566 8999999852  2 


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHH
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKI  294 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~  294 (334)
                             ...+.|+.|+|||||+|++..+.. .+.+++..
T Consensus       161 -------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        161 -------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             -------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence                   124689999999999999987643 34444443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.37  E-value=2.5e-12  Score=127.99  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      ++..+.-....+|||+|||+|+++..+++. +   ..|+++|+|+++++.+.++.--....-.+.+....+++||+|++.
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~  235 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV  235 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence            333344344579999999999999999875 4   369999999999999887641000110111222235899999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+|+|+.. .+...++.++.|+|||||.+++.+
T Consensus       236 ~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        236 GMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            99998742 356789999999999999999975

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.37  E-value=1.7e-12  Score=118.02  Aligned_cols=98  Identities=20%  Similarity=0.349  Sum_probs=74.8

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhhc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ++|||+|||+|.++..+++... ..+|+++|+|++++..+.++    |+.   .......+.. +++++||+|++..+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHHH
Confidence            3799999999999999887531 14789999999998877664    332   1221111121 4568999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+.   +...+|.++.|+|||||++++.+.
T Consensus        79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       79 HIK---DKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence            975   468999999999999999999874

>PRK06202 hypothetical protein; Provisional

Probab=99.36  E-value=4.7e-12  Score=116.54  Aligned_cols=105  Identities=12%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             CCCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCCCccceEEe
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      ...+..+|||+|||+|.++..|++    .+. ..+|+++|.+++|++.+.++..   +......++.++.-+++||+|+|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence            334567999999999999888764    232 2479999999999999887632   11111123344432389999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +.+|+|+.+ .++..+|+||.|++|  |.+++.|..
T Consensus       136 ~~~lhh~~d-~~~~~~l~~~~r~~~--~~~~i~dl~  168 (232)
T PRK06202        136 NHFLHHLDD-AEVVRLLADSAALAR--RLVLHNDLI  168 (232)
T ss_pred             CCeeecCCh-HHHHHHHHHHHHhcC--eeEEEeccc
Confidence            999999864 246789999999999  667777654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.36  E-value=2.5e-12  Score=120.91  Aligned_cols=99  Identities=19%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|..+..++.. +. ...|+++|.++.|++.+.++    |+  +.......+.+ +++ ++||+|+++.+
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCV  155 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCc
Confidence            479999999999876655543 21 13699999999999988765    22  11112222333 455 89999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|..   +...++.|+.|+|||||.|++.+.
T Consensus       156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        156 INLSP---DKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             ccCCC---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            98764   467899999999999999999763

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.34  E-value=3.7e-12  Score=115.68  Aligned_cols=101  Identities=18%  Similarity=0.341  Sum_probs=84.5

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEec
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ...|+++  .+|||+|||.|.+.++|.+ +++   ...|++++++.+..+.+||+.....|.-+.+..|| ++||.|+.+
T Consensus         8 ~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen    8 AEWIEPG--SRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             HHHcCCC--CEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence            3356654  8999999999999999998 453   57999999999999999999777777778888899 999999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .++.++.   .++.+|.||-||   |...|++=+
T Consensus        83 qtLQ~~~---~P~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   83 QTLQAVR---RPDEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             hHHHhHh---HHHHHHHHHHHh---cCeEEEEec
Confidence            9999875   378999999777   667777743

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=1.8e-11  Score=111.67  Aligned_cols=143  Identities=17%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhc-ccCCC-CC-CccceEEech
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWC-EAFST-YP-RTYDLIHAHG  251 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~-e~l~~-yp-~sFDlVha~~  251 (334)
                      .|....++++|++|||.|.|...|+.+.   -.++.+|+|+..++.+++|---.....|. .++|. .| ++|||||++-
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            4788889999999999999999999873   57999999999999999883210111111 22333 45 9999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh----------hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV  321 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~  321 (334)
                      |+.++.+..++..++..+...|+|||.|++.+..+          -.+.|.++++..-=++....- +|....|.-|+++
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  193 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC-RGGSPNEDCLLAR  193 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE-E-SSTTSEEEEEE
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE-cCCCCCCceEeee
Confidence            99988765678899999999999999999976432          234555565555545543222 2333567777775

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.33  E-value=7.1e-12  Score=114.52  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=74.7

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      +..+|||+|||+|.++..|.+. +.  .+++++|+|++|++.+.++.. +...+..+  +.+++ ++||+|+++.+|+|+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~--~~~~~~~sfD~V~~~~vL~hl  118 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSL--FDPFKDNFFDLVLTKGVLIHI  118 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeec--cCCCCCCCEEEEEECChhhhC
Confidence            3468999999999999999875 22  479999999999999887521 12222111  22566 899999999999998


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      . ..++..++.|++|++  ++++++.+
T Consensus       119 ~-p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       119 N-PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            5 456889999999998  57888865

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.31  E-value=2.8e-11  Score=107.17  Aligned_cols=120  Identities=14%  Similarity=0.201  Sum_probs=86.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|.++..+...+.   .|+++|.+++|++.+.++    +. +..+..  +.+...+++||+|+++..+++
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMT--DLFKGVRGKFDVILFNPPYLP   94 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEc--ccccccCCcccEEEECCCCCC
Confidence            36899999999999999998764   699999999999877654    21 111111  111122479999999977765


Q ss_pred             ccCc------------------CCHHHHHHHHHHhhcCCeEEEEEeChhh-HHHHHHHHhcccceEEEe
Q 019879          256 YKDK------------------CNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       256 ~~~~------------------c~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~~~~~l~W~~~~~  305 (334)
                      ..+.                  ..++.++.++.|+|||||.+++.+.... ...+.+.++...+.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            4321                  0146789999999999999999876543 566677777778877654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.31  E-value=8.8e-12  Score=113.52  Aligned_cols=101  Identities=22%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCcc-ch-hhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLI-GI-YHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli-~~-~~d~~e~l~~yp~sFDlVha  249 (334)
                      ++..+..++||+|||.|..+.+|+++|.   +|+++|.|+..++.    |.++++. .. ..|. +.+ .+++.||+|++
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~~~-~~~~~yD~I~s  100 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-NDF-DFPEEYDFIVS  100 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-CCB-S-TTTEEEEEE
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-hhc-cccCCcCEEEE
Confidence            3333457999999999999999999994   69999999877763    3445652 11 2222 122 24589999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..||.|+. +..+..++..|..-++|||++++-
T Consensus       101 t~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  101 TVVFMFLQ-RELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             ESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence            98998875 567889999999999999998884

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.30  E-value=1.8e-11  Score=109.87  Aligned_cols=108  Identities=13%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc--cchhhhhcccCCCCCCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|+.... ...|+++|.+++|++.+.+    .|+  +.......+.+ ..+++||+|+|+. ++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRA-LA  119 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehh-hh
Confidence            57999999999998888765321 1469999999998876543    243  22222223333 2348999999975 32


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhc
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGG  297 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~  297 (334)
                            ++..++.++.|+|||||.+++........++..+.++
T Consensus       120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~  156 (181)
T TIGR00138       120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK  156 (181)
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence                  3567899999999999999999876655555555444

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.29  E-value=8.2e-12  Score=126.39  Aligned_cols=109  Identities=18%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c---cchhh-hhcccCCCCC-Cccc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L---IGIYH-DWCEAFSTYP-RTYD  245 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l---i~~~~-d~~e~l~~yp-~sFD  245 (334)
                      ++..+......+|||+|||+|.++..|++..   ..|+++|.++.|+..+.++. .   +.... +......+++ ++||
T Consensus        29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence            3344444445789999999999999999874   36899999999998765432 1   11111 1111112466 8999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+|+.+++|+.+ .++..+|.+++|+|||||++++.|.
T Consensus       106 ~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        106 LIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             EEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999999999864 3468999999999999999999863

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.29  E-value=2e-12  Score=120.27  Aligned_cols=142  Identities=21%  Similarity=0.339  Sum_probs=103.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCC-C-CCccceEEechh
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFST-Y-PRTYDLIHAHGL  252 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~-y-p~sFDlVha~~v  252 (334)
                      ++.+.++++||+|||||-++..|++.-   -.++++|+|.+||+.+.++|+-. .++.-...|.. . +..||+|.+..|
T Consensus       121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV  197 (287)
T COG4976         121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV  197 (287)
T ss_pred             ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence            345668999999999999999998853   35899999999999999999732 23332333442 3 389999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------h---hHHHHHHHHhcccceEE-Eec----CCCCC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------D---EIIKVKKIVGGMRWDTK-MVD----HEDGP  311 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------~---~~~~i~~~~~~l~W~~~-~~~----~~~~~  311 (334)
                      |.++-   +++.++.-..+.|.|||.|.||-..             +   --..+.....+...++. +.+    .+.|.
T Consensus       198 l~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~  274 (287)
T COG4976         198 LPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGE  274 (287)
T ss_pred             HHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCC
Confidence            99875   4789999999999999999998421             0   11345566666655543 211    24444


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                      -.+..+.|++|+
T Consensus       275 pv~G~L~iark~  286 (287)
T COG4976         275 PVPGILVIARKK  286 (287)
T ss_pred             CCCCceEEEecC
Confidence            466777788774

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.28  E-value=1.3e-11  Score=112.17  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhc-ccCC-CCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWC-EAFS-TYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~-e~l~-~yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++... ..+|+++|.+++|++.+.++    ++  +...+..+ +.++ .++ ++||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            457999999999999999877521 14799999999999877653    32  12222222 3333 255 899999987


Q ss_pred             hhhccc-----cCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcccceEEE
Q 019879          251 GLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       251 ~vfs~~-----~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l~W~~~~  304 (334)
                      ......     ........+|.++.|+|||||.|++... ......+...+..-.|.+.+
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~  178 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS  178 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence            433211     1111257899999999999999999754 45666777777777787764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.27  E-value=1.3e-11  Score=121.36  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ..+|||+|||+|.++..+++.- -..+|+++|.|++|++.+.++..   +...+...+.+ +++ ++||+|+++.+++|.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence            4689999999999988887641 11479999999999998877531   22222223344 455 899999999999886


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .   +.+.+|+|+.|+|||||.+++.+
T Consensus       192 ~---d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        192 P---DPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             C---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            5   46789999999999999998865

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.27  E-value=3.5e-11  Score=107.96  Aligned_cols=103  Identities=20%  Similarity=0.250  Sum_probs=77.5

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-CccceEEechh
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      .....+|||+|||+|.++..+++......+++++|+++.++..+.++..    +...+.....++ ++ ++||+|+++.+
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~  115 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFG  115 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeee
Confidence            3356799999999999999988764221379999999999888877642    112222122333 44 89999999988


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|..   ++..+++++.++|||||.+++.+.
T Consensus       116 ~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       116 LRNVT---DIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             eCCcc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence            88754   578999999999999999998764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.27  E-value=7.5e-12  Score=118.26  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cch----hhhhcccCCCCCCccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGI----YHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~----~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      .++|||+|||+|-+...|+..|   .+|+|+|++.+|+++|.+..-     .+.    ....|.+.--....||.|+|+.
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence            4789999999999999999988   479999999999999887621     110    1112222222235699999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      |++|+.   +++.++.-+.+.|||||.++|++..
T Consensus       167 vleHV~---dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  167 VLEHVK---DPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             HHHHHh---CHHHHHHHHHHHhCCCCceEeeehh
Confidence            999985   4789999999999999999999854

>PRK06922 hypothetical protein; Provisional

Probab=99.27  E-value=8.8e-12  Score=130.66  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=77.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhcccCC-CCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFS-TYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~l~-~yp-~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.. ...+|+++|.|+.|++.+.++..     +......+..++ .++ ++||+|+++.+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence            35799999999999988887642 22589999999999998876521     111222233344 255 99999999998


Q ss_pred             hcccc----------CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYK----------DKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~----------~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|++.          +..++..+|+++.|+|||||.+++.|.
T Consensus       497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            88642          123578999999999999999999984

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.27  E-value=3.5e-11  Score=115.14  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCC-CCccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTY-PRTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~y-p~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|.++.+++..+.  ..|+++|.++.+++.+.++.    +.............+ +++||+|+|+.+.++
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~  237 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV  237 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence            37999999999999988887664  37999999999999877652    211111111222233 389999999855432


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEE
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~  304 (334)
                            +..++.++.|+|||||+|+++.... ....+.+.+++. |+...
T Consensus       238 ------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~  280 (288)
T TIGR00406       238 ------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE  280 (288)
T ss_pred             ------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence                  4679999999999999999987543 445566666665 76543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=3.3e-11  Score=115.46  Aligned_cols=108  Identities=21%  Similarity=0.365  Sum_probs=82.6

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~~d~~e~l~~yp~sFDl  246 (334)
                      +...+.-....+|||+|||.|+++.+++++ +   .+|+++++|++++..+.+    +|+.....-.-++...++..||-
T Consensus        64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDr  140 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDR  140 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccce
Confidence            344343344589999999999999999986 5   479999999999886554    57653222212334455666999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|-.+|+|+. ......++.-++++|+|||.+++-+
T Consensus       141 IvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         141 IVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             eeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEE
Confidence            99999999986 3568899999999999999998864

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.24  E-value=4.7e-11  Score=108.82  Aligned_cols=101  Identities=9%  Similarity=0.128  Sum_probs=76.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc----chhhhhcccCCCCCCccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----GIYHDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli----~~~~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      ...+|||+|||+|.++..|++.+   ..|+++|++++|+..+.++...    ....-.+.++...+++||+|++..+++|
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~  131 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence            45799999999999999998875   3689999999999988776311    0111111222223489999999999988


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++ ..++..++.++.|++++|+++.+...
T Consensus       132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~  159 (219)
T TIGR02021       132 YP-ASDMAKALGHLASLTKERVIFTFAPK  159 (219)
T ss_pred             CC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            74 34578899999999999888887654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.24  E-value=3e-11  Score=108.40  Aligned_cols=90  Identities=23%  Similarity=0.331  Sum_probs=68.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCcC
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKC  260 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c  260 (334)
                      .+|||+|||+|.++..|++...  .+++++|.+++++..+.++++.-...+..+.+++++ ++||+|+|+++|+|+.   
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---   89 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---   89 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence            5899999999999999976532  357999999999998887764322222222344466 8999999999999975   


Q ss_pred             CHHHHHHHHHHhhcCC
Q 019879          261 NIEDILLEMDRILRPE  276 (334)
Q Consensus       261 ~~~~~L~Em~RVLRPG  276 (334)
                      ++..+|+||.|+++++
T Consensus        90 d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        90 NPEEILDEMLRVGRHA  105 (194)
T ss_pred             CHHHHHHHHHHhCCeE
Confidence            4788999999887753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.22  E-value=1.2e-10  Score=109.07  Aligned_cols=117  Identities=16%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~  259 (334)
                      ...+|||+|||+|.++.+++..+..  .|+++|+++.+++.+.++.-.....+.. .+..-..+||+|+|+...+     
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~-~~~~~~~~fD~Vvani~~~-----  190 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV-YLPQGDLKADVIVANILAN-----  190 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE-EEccCCCCcCEEEEcCcHH-----
Confidence            3479999999999998888776642  5999999999999877652110110000 1111112799999984322     


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEe
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~  305 (334)
                       .+..++.++.|+|||||.+++++... ....+...+....+.....
T Consensus       191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~  236 (250)
T PRK00517        191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV  236 (250)
T ss_pred             -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence             24678999999999999999997644 4556777777777876543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.22  E-value=1.4e-10  Score=103.48  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~  250 (334)
                      +......+|||+|||+|.++..++.... ...|+++|.++.+++.+.++    ++.. ..-.+.+. .+++++||+|+++
T Consensus        27 l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~  104 (187)
T PRK08287         27 LELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIG  104 (187)
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEEC
Confidence            3333557999999999999998887531 24799999999999877653    2211 11111122 2345789999987


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcccce
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l~W~  301 (334)
                      ....      .+..++.++.|+|+|||.+++... ......+.++++...+.
T Consensus       105 ~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        105 GSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS  150 (187)
T ss_pred             CCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence            5433      356789999999999999999763 33455666667666664

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.20  E-value=1e-10  Score=105.97  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=75.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c---cchhhhhcccCCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l---i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..++.......+++++|.++.+++.+.++.    +   +.........+ +++ ++||+|++++
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~I~~~~  129 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-PFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-CCCCCCccEEEEec
Confidence            4578999999999999988875421247999999999998877652    1   11222112222 244 8999999998


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++++..   ++..+|.++.++|+|||.+++.+.
T Consensus       130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        130 GLRNVP---DIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             ccccCC---CHHHHHHHHHHhccCCcEEEEEEe
Confidence            888754   578999999999999999998753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.20  E-value=1.5e-10  Score=94.47  Aligned_cols=96  Identities=20%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCC-CCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTY-PRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~y-p~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..++++... .+|+++|.++.+++.+.++    ++.  ...........++ +.+||+|++...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            3469999999999999999875211 5799999999998876543    221  1111111111222 379999998754


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .+      ....++.++.|+|+|||.|++.
T Consensus        98 ~~------~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        98 GG------LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ch------hHHHHHHHHHHHcCCCCEEEEE
Confidence            33      3468999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14968 putative methyltransferase; Provisional

Probab=99.19  E-value=2.6e-10  Score=100.06  Aligned_cols=119  Identities=15%  Similarity=0.221  Sum_probs=82.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc----c-chhhhhcccCCCCC-CccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL----I-GIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl----i-~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      +..+|||+|||+|.++..|+..+   .+|+++|.+++++..+.++    ++    + ....|+.   .+++ .+||+|++
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~d~vi~   96 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---EPFRGDKFDVILF   96 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---ccccccCceEEEE
Confidence            45689999999999999998874   5799999999998877543    22    1 1122222   2344 68999998


Q ss_pred             chhhcccc------------------CcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEE
Q 019879          250 HGLFSLYK------------------DKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       250 ~~vfs~~~------------------~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~  304 (334)
                      +..+.+..                  ....+..++.++.|+|||||.+++..... ..+.+...+....+++..
T Consensus        97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~  170 (188)
T PRK14968         97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV  170 (188)
T ss_pred             CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence            75443210                  01125678999999999999988765432 345677777777777653

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.18  E-value=8.9e-11  Score=107.58  Aligned_cols=134  Identities=10%  Similarity=0.054  Sum_probs=78.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCC-------CCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS-------TYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~-------~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..+++.......|+++|+++ |...   .++ ..++...+...       +++ .+||+|+|+..
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence            46899999999999998887632224699999984 4221   121 11221122211       244 89999999865


Q ss_pred             hccccCcC-C-------HHHHHHHHHHhhcCCeEEEEEeChh-----hHHHHHHHHhcccceEEEecCCCCCCCCceEEE
Q 019879          253 FSLYKDKC-N-------IEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV  319 (334)
Q Consensus       253 fs~~~~~c-~-------~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~  319 (334)
                      .+...+.. +       .+.+|.++.|+|||||.|++.....     .+..++..+.....   ..+.-.-....|.+++
T Consensus       127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~  203 (209)
T PRK11188        127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIV  203 (209)
T ss_pred             CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEE
Confidence            44322111 1       2579999999999999999965432     22332222222222   1111111225799999


Q ss_pred             EEe
Q 019879          320 AVK  322 (334)
Q Consensus       320 ~~K  322 (334)
                      |+.
T Consensus       204 ~~~  206 (209)
T PRK11188        204 ATG  206 (209)
T ss_pred             eec
Confidence            864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.17  E-value=1e-10  Score=104.48  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=79.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC------CCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF------STYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l------~~yp-~sFDlVha~~v  252 (334)
                      ...+|||+|||+|+++..+.++......|+++|.++.+    ...++.....+..+..      ..++ ++||+|+++..
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~  107 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA  107 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence            34789999999999998887653222368999999643    1112211111211110      0244 78999998643


Q ss_pred             h--------ccccCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHhcccceEEEe-cCCCCCCCCceEEEEEe
Q 019879          253 F--------SLYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTKMV-DHEDGPLVPEKILVAVK  322 (334)
Q Consensus       253 f--------s~~~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~~l~W~~~~~-~~~~~~~~~e~~l~~~K  322 (334)
                      .        .|....+.++.+|.++.|+|||||.+++.. ....+.++-..++..-+.+... +.-.-....|++++|..
T Consensus       108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (188)
T TIGR00438       108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR  187 (188)
T ss_pred             CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence            2        111111234689999999999999999953 2222222222222222444432 33222335799999863

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.16  E-value=8.9e-11  Score=105.86  Aligned_cols=116  Identities=12%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC--CCC-CccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS--TYP-RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~--~yp-~sFDlVha~~  251 (334)
                      ...|||+|||+|.++..|+.+.. ..+|+++|.+++++..+.++    ++  +...+..+..++  .++ ++||.|+++.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            46899999999999999987632 24899999999999876543    32  112222222222  255 7999998874


Q ss_pred             hhcc-----ccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhc
Q 019879          252 LFSL-----YKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGG  297 (334)
Q Consensus       252 vfs~-----~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~  297 (334)
                      -..+     ...+...+.++.++.|+|||||.|++..... ..+.+.+.+..
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~  147 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE  147 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            2221     1112223679999999999999999875544 55555444433

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK04266 fibrillarin; Provisional

Probab=99.16  E-value=4.4e-10  Score=104.57  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccchh-hhhcccC--CCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIY-HDWCEAF--STYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~-~d~~e~l--~~yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.-. ...|+++|.++.|++.+.+    +..+... .|..+..  ..++.+||+|++.  
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--  148 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--  148 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC--
Confidence            347999999999999999987521 2369999999988874432    2212222 2211110  1234679999764  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                         ..+......+|.|+.|+|||||.|++
T Consensus       149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        149 ---VAQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             ---CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence               11111234568999999999999999

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.15  E-value=3.3e-10  Score=102.94  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=72.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCCCccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      ...+|||+|||+|.++..|++.+.   .|+++|.|++|+..+.++-    +....+....+++..+++||+|++..+|+|
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            457999999999999999998763   4999999999999887652    111111111233333489999999999988


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.+ .++..++.++.|++++|+.+.+.
T Consensus       140 ~~~-~~~~~~l~~l~~~~~~~~~i~~~  165 (230)
T PRK07580        140 YPQ-EDAARMLAHLASLTRGSLIFTFA  165 (230)
T ss_pred             CCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence            653 45778999999988666555443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.15  E-value=9.9e-11  Score=107.87  Aligned_cols=98  Identities=10%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-cCccc--------------hhhhhcccCCCCC----
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLIG--------------IYHDWCEAFSTYP----  241 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-Rgli~--------------~~~d~~e~l~~yp----  241 (334)
                      ..+|||+|||.|..+.+|+++|   .+|+++|+|+.+++.+++ .|+..              .+.-.+.++..++    
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            3699999999999999999998   479999999999987533 34311              0111233332222    


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .+||+|+...+|+|++ ......++..|.|.|||||.+++.
T Consensus       112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence            5799999998898875 345678999999999999975443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.15  E-value=5.1e-10  Score=100.99  Aligned_cols=147  Identities=15%  Similarity=0.232  Sum_probs=91.7

Q ss_pred             CCCccccch--hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879          149 GVSAESYQE--DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--  224 (334)
Q Consensus       149 g~~~e~f~~--d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--  224 (334)
                      |+....|..  +.-.++..+..-  .+..+......+|||+|||+|.++..++..-....+|+++|.++.+++.+.++  
T Consensus         9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~   86 (198)
T PRK00377          9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE   86 (198)
T ss_pred             CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            555556665  334666656432  12234444557999999999999887765311124699999999999877554  


Q ss_pred             --Cccc---hhh-hhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhc
Q 019879          225 --GLIG---IYH-DWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGG  297 (334)
Q Consensus       225 --gli~---~~~-d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~  297 (334)
                        |+..   ... +..+.++..+..||+|++..      ...++..++.++.|+|||||.+++... .+.+.++...++.
T Consensus        87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (198)
T PRK00377         87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN  160 (198)
T ss_pred             HhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence              3211   111 11111222337899998852      123578899999999999999998432 3345566666666


Q ss_pred             ccceEE
Q 019879          298 MRWDTK  303 (334)
Q Consensus       298 l~W~~~  303 (334)
                      +.++..
T Consensus       161 ~g~~~~  166 (198)
T PRK00377        161 IGFNLE  166 (198)
T ss_pred             cCCCeE
Confidence            665544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.13  E-value=2.5e-10  Score=105.57  Aligned_cols=125  Identities=14%  Similarity=0.200  Sum_probs=92.3

Q ss_pred             HHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-----chhhhhcccCCCCCCcc
Q 019879          170 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYPRTY  244 (334)
Q Consensus       170 ~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-----~~~~d~~e~l~~yp~sF  244 (334)
                      .+++..|.....++|.|+|||+|...+.|.++= -...|+|+|.|++||+.|.+|...     +..+.|+-     +..+
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-----~~~~   93 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-----EQPT   93 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC-----CCcc
Confidence            456777888889999999999999999998861 124589999999999999888642     23333332     1789


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--eChh--hHHHHHHHHhcccceEE
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--DEVD--EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D~~~--~~~~i~~~~~~l~W~~~  303 (334)
                      |+++++.+|+.+++   -..+|..+.--|.|||.|.+.  |+.+  .-..|.+.++..-|...
T Consensus        94 dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~  153 (257)
T COG4106          94 DLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE  153 (257)
T ss_pred             chhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh
Confidence            99999999998765   367888888899999999997  3222  12345555555555433

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.12  E-value=2.4e-10  Score=103.68  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=75.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-CCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..+++.+.   .++++|.++.++..+.++    +.  +.......+.++.. +++||+|+++.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            357999999999999998887653   589999999998877654    22  11111212223322 389999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|..   ++..+|.++.++|+|||.+++++.
T Consensus       122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence            98864   578999999999999999999864

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.11  E-value=3.5e-10  Score=103.62  Aligned_cols=100  Identities=13%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      .+..+|||+|||+|.++..+.+.+   .+++++|.++.++..+.++    ++ +.......+.++..+ ++||+|+++.+
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            345789999999999999998875   4699999999998877664    22 111111112222223 89999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|..   +...+|.++.|+|+|||.+++.+.
T Consensus       124 l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        124 LEHVP---DPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence            98865   467899999999999999999864

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.10  E-value=7.7e-10  Score=108.78  Aligned_cols=115  Identities=16%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccceEEechhhccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      ..+|||+|||+|.++..+.++.. ...|+++|+++.++..+.+.    ++..... +...+...++.||+|+|+.-||..
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence            35799999999999999988632 13699999999999877542    3321111 111223335899999999888753


Q ss_pred             cC--cCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHhc
Q 019879          257 KD--KCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGG  297 (334)
Q Consensus       257 ~~--~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~~  297 (334)
                      ..  ....+.++.++.|.|||||.|+|..+.-  +-..+++.+..
T Consensus       275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~  319 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS  319 (342)
T ss_pred             ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC
Confidence            21  1235799999999999999998865432  33444544443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.10  E-value=7.8e-10  Score=110.20  Aligned_cols=119  Identities=16%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-----cchhhhhcccCCCCC-Cc
Q 019879          174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-----IGIYHDWCEAFSTYP-RT  243 (334)
Q Consensus       174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-----i~~~~d~~e~l~~yp-~s  243 (334)
                      ..+......+|||+|||+|.++..++++.. ...|+++|.|+.+++.+.+.    +.     +....+  ..+...+ .+
T Consensus       222 ~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~  298 (378)
T PRK15001        222 QHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFR  298 (378)
T ss_pred             HhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCC
Confidence            334433346899999999999999987632 14799999999999887653    11     111111  1223344 68


Q ss_pred             cceEEechhhcccc--CcCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHH
Q 019879          244 YDLIHAHGLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIV  295 (334)
Q Consensus       244 FDlVha~~vfs~~~--~~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~  295 (334)
                      ||+|+|+--||...  .......++.+..|+|||||.|++.-.  .++..++++++
T Consensus       299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f  354 (378)
T PRK15001        299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  354 (378)
T ss_pred             EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence            99999997776421  111246899999999999999998753  33555666644

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.09  E-value=3.5e-10  Score=102.94  Aligned_cols=100  Identities=18%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.+++.|++.-.-...|+++|.++++++.+.++    |+.   ...+.......+...+||+|+
T Consensus        68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii  147 (205)
T PRK13944         68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII  147 (205)
T ss_pred             cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence            3333457999999999999988876311013699999999998877653    321   122211112112237999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++..+.++         ..|+.|+|+|||.|++...
T Consensus       148 ~~~~~~~~---------~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        148 VTAAASTI---------PSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             EccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence            98776543         2488999999999998643

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.08  E-value=4.3e-10  Score=103.46  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-----c--cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L--IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-----l--i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      -..||.+|||||..-.++-..+.  ..|+.+|.+++|-+++..+-     +  .-.++...|.++..+ .|+|.|+|..+
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             ccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            35789999999986666654332  46999999999988654431     1  113445567787677 99999999988


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +-..   .+..+.|.|+.|+|||||.+++-++.
T Consensus       155 LCSv---e~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  155 LCSV---EDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             Eecc---CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            7643   46899999999999999999999875

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.08  E-value=4.5e-10  Score=107.71  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=73.9

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha  249 (334)
                      +.....++|||+|||+|.++..++++.-. .+++.+|. +.+++.+.++    |+...+...+.++.  ++| .+|+|++
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~  221 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF  221 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence            34445689999999999999999886321 46889998 4788876543    44221111122322  234 4799999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++++|+..+ .....+|++++|+|||||.+++.|.
T Consensus       222 ~~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       222 CRILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             EhhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            988887642 3356899999999999999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.08  E-value=4.8e-10  Score=103.64  Aligned_cols=97  Identities=10%  Similarity=0.038  Sum_probs=73.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH-HHcCccch--------------hhhhcccCCCC---C-
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI-YERGLIGI--------------YHDWCEAFSTY---P-  241 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a-~~Rgli~~--------------~~d~~e~l~~y---p-  241 (334)
                      ..+|||+|||.|..+.+|+++|.   +|+++|+|+..++.+ .++|+...              +.-++.++..+   + 
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            36999999999999999999984   699999999988865 34554211              11122333222   3 


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      .+||+|+...+|+|++ ...-..++..|.++|||||.+++
T Consensus       115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            6899999999999885 34567999999999999996444

>TIGR03438 probable methyltransferase

Probab=99.07  E-value=5.5e-10  Score=107.53  Aligned_cols=126  Identities=13%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             CccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---c
Q 019879          151 SAESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---L  226 (334)
Q Consensus       151 ~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---l  226 (334)
                      .+++|...++.  .....+.. +...++.  ..+|||+|||+|.++..|++......+++++|+|++||+.+.++-   .
T Consensus        37 ~peYy~tr~E~--~il~~~~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~  112 (301)
T TIGR03438        37 LPEYYPTRTEA--AILERHADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY  112 (301)
T ss_pred             CCccccHHHHH--HHHHHHHHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC
Confidence            34666655542  44444433 3334443  468999999999999999876321257999999999999887651   1


Q ss_pred             c-----chhhhhcccCCCCCC-----ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          227 I-----GIYHDWCEAFSTYPR-----TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       227 i-----~~~~d~~e~l~~yp~-----sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .     ....|..+.+ .++.     ...++++.+.|+++. ..+...+|++++++|+|||.|+|.
T Consensus       113 p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       113 PQLEVHGICADFTQPL-ALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             CCceEEEEEEcccchh-hhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            1     1112222222 2332     233555556787764 456779999999999999999985

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.04  E-value=8.8e-10  Score=106.53  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=76.8

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH-HHHHcCccc---hhh---hhcccCCCCCCcc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG-VIYERGLIG---IYH---DWCEAFSTYPRTY  244 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~-~a~~Rgli~---~~~---d~~e~l~~yp~sF  244 (334)
                      +.+.|.+.+.++|||+|||.|.++-.|+.+|+.  .|+|+|.+.-.+. +.+-+.+++   ..+   .-.|.++. .++|
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F  183 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF  183 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence            334455667799999999999999999988763  5899998754322 211121211   000   11245554 6899


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|+|-.||.|..   ++...|.++...|||||.+++-+
T Consensus       184 DtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  184 DTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             CEEEEeeehhccC---CHHHHHHHHHHhhCCCCEEEEEE
Confidence            9999999999964   58899999999999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.01  E-value=1.9e-09  Score=100.05  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=95.9

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch--hhhhcccCCCCCCccceEEechhh
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI--YHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      +.....+-|||||||+|--+..|.+.|   .-.+++|+|+.||++|.+|-+.+.  +.|--+.+|+-|+|||-|++-+.+
T Consensus        46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv  122 (270)
T KOG1541|consen   46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV  122 (270)
T ss_pred             CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence            455467889999999999999999887   347999999999999998755432  334456775555999999887655


Q ss_pred             ccc---cCcC-----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE----EEecCCCCCCCCceEEEE
Q 019879          254 SLY---KDKC-----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT----KMVDHEDGPLVPEKILVA  320 (334)
Q Consensus       254 s~~---~~~c-----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~----~~~~~~~~~~~~e~~l~~  320 (334)
                      ..+   ...+     .+..++.-++.+|++|+..++.=-++....++.+.+.-+|.-    .+.|..++...+-.+||-
T Consensus       123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL  201 (270)
T KOG1541|consen  123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL  201 (270)
T ss_pred             eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence            422   1111     234678889999999999999854443333444433333322    144554444455566665

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=4.7e-09  Score=101.49  Aligned_cols=143  Identities=15%  Similarity=0.193  Sum_probs=94.7

Q ss_pred             ccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccch
Q 019879          154 SYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGI  229 (334)
Q Consensus       154 ~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~  229 (334)
                      .|-.-++---..+-...+-  .+.  +.++|||+|||+|-++.+.+..|+  .-|+++|+.+.+++.+++.-    +...
T Consensus       140 AFGTG~HpTT~lcL~~Le~--~~~--~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~  213 (300)
T COG2264         140 AFGTGTHPTTSLCLEALEK--LLK--KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELL  213 (300)
T ss_pred             ccCCCCChhHHHHHHHHHH--hhc--CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchh
Confidence            4555555433444332221  122  468999999999999999988875  35899999999999887642    2111


Q ss_pred             hhhhcccCCCCC--CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEec
Q 019879          230 YHDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       230 ~~d~~e~l~~yp--~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~  306 (334)
                      .+.-.-..+..+  +.||+|+||= +..     -+..+..++.|.|||||++|+|--.+ ..+.+.+.+.+-.|++....
T Consensus       214 ~~~~~~~~~~~~~~~~~DvIVANI-LA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~  287 (300)
T COG2264         214 VQAKGFLLLEVPENGPFDVIVANI-LAE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL  287 (300)
T ss_pred             hhcccccchhhcccCcccEEEehh-hHH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence            111111122344  5999999983 322     24688899999999999999997543 45567777877788776544


Q ss_pred             CC
Q 019879          307 HE  308 (334)
Q Consensus       307 ~~  308 (334)
                      ..
T Consensus       288 ~~  289 (300)
T COG2264         288 ER  289 (300)
T ss_pred             ec
Confidence            33

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.01  E-value=4.7e-09  Score=98.18  Aligned_cols=139  Identities=17%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc---Cccchhhhhccc-CCCCC-CccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R---gli~~~~d~~e~-l~~yp-~sFDlVha~~vfs  254 (334)
                      +..+|||+|||+|.++..|+.... ...|+++|+++.++..+.+.   +......-.+.+ +.+++ ++||+|+++--+.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI  186 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence            446899999999999999987531 24799999999999887764   211111101111 22334 7999999862111


Q ss_pred             ------cccC-----------------cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccce-EEEecCCCC
Q 019879          255 ------LYKD-----------------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD-TKMVDHEDG  310 (334)
Q Consensus       255 ------~~~~-----------------~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~-~~~~~~~~~  310 (334)
                            .+..                 ......++.++.++|+|||++++......-+.+..++....+. +..+  .+ 
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~d-  263 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--KD-  263 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--cC-
Confidence                  0000                 0113578899999999999999976555445677777665554 3332  11 


Q ss_pred             CCCCceEEEEEe
Q 019879          311 PLVPEKILVAVK  322 (334)
Q Consensus       311 ~~~~e~~l~~~K  322 (334)
                      -.+.+++++++|
T Consensus       264 ~~~~~r~~~~~~  275 (275)
T PRK09328        264 LAGRDRVVLGRR  275 (275)
T ss_pred             CCCCceEEEEEC
Confidence            125788888764

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.00  E-value=8.4e-10  Score=107.49  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-------hhhh-hcccCCCCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-------IYHD-WCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-------~~~d-~~e~l~~yp~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..|++++   .+|+++|+|++|++.+.++.-..       .... .+.++..++++||+|+|..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence            34699999999999999999876   37999999999999887763110       0001 1123333468999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +++|+++ .....++..+.+ +.+||.++.
T Consensus       221 vL~H~p~-~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        221 VLIHYPQ-DKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EEEecCH-HHHHHHHHHHHh-hcCCEEEEE
Confidence            9999764 234556666765 456666543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.00  E-value=3e-09  Score=97.77  Aligned_cols=119  Identities=18%  Similarity=0.294  Sum_probs=81.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..+++... ..+++++|.++.++..+.++    ++.  ...+.  ..+.+++ ++||+|+|+--+
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~Vi~npPy  164 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQS--DWFEPLPGGKFDLIVSNPPY  164 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC--chhccCcCCceeEEEECCCC
Confidence            35899999999999999987521 14799999999999877653    331  11211  1123455 899999996332


Q ss_pred             cc------ccCc-----------------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE
Q 019879          254 SL------YKDK-----------------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       254 s~------~~~~-----------------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~  302 (334)
                      ..      +...                 .....++.++.|+|+|||.+++.......+.+.++++...+..
T Consensus       165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~  236 (251)
T TIGR03534       165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD  236 (251)
T ss_pred             CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence            21      1100                 0124688999999999999999876655567777777766653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.99  E-value=1.4e-09  Score=99.44  Aligned_cols=99  Identities=16%  Similarity=0.010  Sum_probs=66.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|.+++.|++.......|+++|.++++++.+.++    |+  +...+.......+-...||+|++
T Consensus        73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~  152 (215)
T TIGR00080        73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYV  152 (215)
T ss_pred             hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEE
Confidence            3334457999999999999999887532223589999999999877654    33  11122111111111278999998


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +....+         +..++.+.|+|||.+++.-
T Consensus       153 ~~~~~~---------~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       153 TAAGPK---------IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cCCccc---------ccHHHHHhcCcCcEEEEEE
Confidence            754433         4457889999999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.99  E-value=6.9e-10  Score=103.93  Aligned_cols=112  Identities=21%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             ceEeeecccccHHHHHHH-hCCCcEEEEEeccCChhhHHHHHHcCccchhh-------hhcccCCCCCCccceEEechhh
Q 019879          182 RNIMDMNAGFGGFAAAIQ-SSKLWVMNVVPTLADKNTLGVIYERGLIGIYH-------DWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~-~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-------d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      +.++|+|||+| .|+..+ +..   -+|+++|.|+.||+++...-.+...|       +-..+|.--++|.|+|+|...+
T Consensus        35 ~~a~DvG~G~G-qa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   35 RLAWDVGTGNG-QAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             ceEEEeccCCC-cchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            48999999999 555444 432   46999999999999887653322111       1111222225999999999888


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCe-EEEE---EeChhhHHHHHHHHhcccce
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEG-AIII---RDEVDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~~~~~l~W~  301 (334)
                      |    |++++.++++++|||||.| .+.+   +|..-...++..++.++.|.
T Consensus       111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~  158 (261)
T KOG3010|consen  111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS  158 (261)
T ss_pred             H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence            6    7899999999999999877 4433   22222233444445555553

>PLN03075 nicotianamine synthase; Provisional

Probab=98.99  E-value=8.7e-09  Score=99.61  Aligned_cols=137  Identities=12%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----Cc---cch-hhhhcccCCCCCCccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GL---IGI-YHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----gl---i~~-~~d~~e~l~~yp~sFDlVha  249 (334)
                      ..++|+|+|||.|++.+.++.. -.....++++|.++++++.|++.     |+   +.+ ..|..+ ..+..+.||+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence            6799999999999876655442 11123589999999998876542     22   111 112222 1112278999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH-------HhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI-------VGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~-------~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      . ++++. +..+.+.+|..+.|.|||||.++++-...    ++.+       ..--.|++-...|..++ .-+-++|++|
T Consensus       202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G----~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r~  274 (296)
T PLN03075        202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHG----ARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIARK  274 (296)
T ss_pred             e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccc----hHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEEe
Confidence            9 77654 23578999999999999999999997422    1111       11117888766676555 6688999999


Q ss_pred             cc
Q 019879          323 QY  324 (334)
Q Consensus       323 ~~  324 (334)
                      .-
T Consensus       275 ~~  276 (296)
T PLN03075        275 PG  276 (296)
T ss_pred             ec
Confidence            65

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=2.3e-09  Score=98.28  Aligned_cols=98  Identities=16%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      +......+|||+|||+|.+++.|++.......|+++|.++++++.+.++    |+  +...+..+.. ...+ +.||+|+
T Consensus        72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD~I~  150 (212)
T PRK13942         72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYDRIY  150 (212)
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcCEEE
Confidence            3334458999999999999988876421123699999999999887664    32  1112211111 1223 8899999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +...+++         +..++.+.|||||.+++--
T Consensus       151 ~~~~~~~---------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        151 VTAAGPD---------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ECCCccc---------chHHHHHhhCCCcEEEEEE
Confidence            9765543         3346778999999998854

>PRK14967 putative methyltransferase; Provisional

Probab=98.97  E-value=5.4e-09  Score=96.02  Aligned_cols=118  Identities=14%  Similarity=0.280  Sum_probs=75.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhh-hhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYH-DWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~-d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..++..+.  ..|+++|.++.++..+.++    ++ +..+. |+.+   .++ ++||+|+++.-+
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy  111 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY  111 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence            46899999999999998887653  3799999999999876553    32 11111 2111   234 799999998433


Q ss_pred             ccccC------------------cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEE
Q 019879          254 SLYKD------------------KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       254 s~~~~------------------~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~  303 (334)
                      .....                  ...++.++.++.|+|||||.+++..... ....+...+++..++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  180 (223)
T PRK14967        112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE  180 (223)
T ss_pred             CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence            21100                  0115678899999999999999853321 23334444444455444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.97  E-value=2.9e-09  Score=106.42  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhccc-CCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEA-FSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~-l~~yp-~sFDlVha~~  251 (334)
                      ....+||+|||+|.++..++.+.- ..+++|+|+++.++..+.++    |+.  ......+.. +..++ ++||.|+++.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            346899999999999999988632 24899999999888765443    441  122221222 23466 9999999863


Q ss_pred             hhccccC---cCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHH
Q 019879          252 LFSLYKD---KCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIV  295 (334)
Q Consensus       252 vfs~~~~---~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~  295 (334)
                      -..+...   +-....+|.|+.|+|+|||.+.+.+.. ++...+.+.+
T Consensus       201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~  248 (390)
T PRK14121        201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF  248 (390)
T ss_pred             CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence            2221110   112368999999999999999986544 4555544443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.96  E-value=2.3e-09  Score=81.73  Aligned_cols=96  Identities=19%  Similarity=0.310  Sum_probs=69.1

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH---cCc---cchhhhhcccCCC-CCCccceEEechhhcc
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL---IGIYHDWCEAFST-YPRTYDLIHAHGLFSL  255 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~---Rgl---i~~~~d~~e~l~~-yp~sFDlVha~~vfs~  255 (334)
                      +|||+|||+|.++..+....  ...++++|.++..+..+.+   .+.   +..++........ .+.+||+|+++.++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            58999999999999888732  2579999999888776652   111   1122211222222 2388999999988876


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .  ......++..+.+.|||||.+++.
T Consensus        79 ~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            3  235789999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.96  E-value=7.8e-09  Score=99.01  Aligned_cols=124  Identities=19%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCC-CccceEEech---
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHG---  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp-~sFDlVha~~---  251 (334)
                      ..+|||+|||+|.++..|+.... ...|+++|+|+.++..+.+.    |+...+.-.+.+ +.+++ ++||+|+++-   
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            46899999999999999987521 14799999999999987654    431111111112 12345 6899999961   


Q ss_pred             ---hhc-------cccC--------c-CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEec
Q 019879          252 ---LFS-------LYKD--------K-CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       252 ---vfs-------~~~~--------~-c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~  306 (334)
                         .+.       |.+.        . .....++.++.++|+|||.+++-..... +.+++++....|.-..++
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~  273 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE  273 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence               111       1110        0 0135789999999999999998766543 577777665554433333

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.94  E-value=2.5e-09  Score=94.50  Aligned_cols=116  Identities=19%  Similarity=0.271  Sum_probs=73.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ...+|||+|||+|.++..++.+... ..|+.+|+++.++..+.+.    ++.......+..+...+ ..||+|+|+-=|+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence            3478999999999999999987543 4599999999999877553    32211111122233344 9999999984443


Q ss_pred             cccC--cCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879          255 LYKD--KCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG  296 (334)
Q Consensus       255 ~~~~--~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~  296 (334)
                      .-.+  ......++.+..+.|+|||.+++--.  ...-..+++.+.
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~  155 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG  155 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence            2111  11257899999999999998855432  223333455444

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.93  E-value=1.1e-08  Score=97.64  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=90.5

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chh-hhhcccCCCCC-CccceEEec--
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIY-HDWCEAFSTYP-RTYDLIHAH--  250 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~-~d~~e~l~~yp-~sFDlVha~--  250 (334)
                      .+|||+|||+|.++..|+.... ...|+++|+|+.++..+.+.    ++.   ..+ .|+.+   +++ ..||+|+++  
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEECCC
Confidence            5899999999999999987531 14699999999999887764    321   111 23222   344 489999996  


Q ss_pred             -----------hhhccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHh-cccce-EEEecCC
Q 019879          251 -----------GLFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVG-GMRWD-TKMVDHE  308 (334)
Q Consensus       251 -----------~vfs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~-~l~W~-~~~~~~~  308 (334)
                                 .++.|.+..         ..+..++.+..+.|+|||++++-........+.+++. ...|. +.++  .
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~--~  269 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENG--R  269 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEe--c
Confidence                       122221100         1255889999999999999999877665566777665 45664 3332  2


Q ss_pred             CCCCCCceEEEEEec
Q 019879          309 DGPLVPEKILVAVKQ  323 (334)
Q Consensus       309 ~~~~~~e~~l~~~K~  323 (334)
                      | -.+.++++++++.
T Consensus       270 D-~~g~~R~~~~~~~  283 (284)
T TIGR00536       270 D-LNGKERVVLGFYH  283 (284)
T ss_pred             C-CCCCceEEEEEec
Confidence            2 2257889988753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.93  E-value=1.3e-09  Score=88.74  Aligned_cols=100  Identities=18%  Similarity=0.282  Sum_probs=68.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCC-CCC-CccceEEechh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYP-RTYDLIHAHGL  252 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~-~yp-~sFDlVha~~v  252 (334)
                      .+|||+|||+|.++.++++.+  ..+++++|+++..++.++.+    ++   +..++.....+. .++ ++||+|+++--
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            589999999999999998876  35899999999888877654    22   111211111222 355 99999999966


Q ss_pred             hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +....     .......++.++.|+|||||.+++.-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            65321     11234689999999999999998754

...

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.92  E-value=5.2e-09  Score=101.18  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=87.9

Q ss_pred             cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc
Q 019879          153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG  228 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~  228 (334)
                      ..|-.-+|---+.+..+.+..  ..  +..+|||+|||+|-++.+-+..|+  ..|+++|+++..+..+.+.    |+..
T Consensus       138 ~AFGTG~H~TT~lcl~~l~~~--~~--~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~  211 (295)
T PF06325_consen  138 MAFGTGHHPTTRLCLELLEKY--VK--PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVED  211 (295)
T ss_dssp             SSS-SSHCHHHHHHHHHHHHH--SS--TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred             CcccCCCCHHHHHHHHHHHHh--cc--CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence            356665565445565543222  23  246999999999998887777775  3699999999888877654    2211


Q ss_pred             hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEec
Q 019879          229 IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       229 ~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~  306 (334)
                      ... .. .....+ ..||+|+||-+..      -+..++.++.+.|+|||+||+|--.. ....|.+.++. .+......
T Consensus       212 ~~~-v~-~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~  282 (295)
T PF06325_consen  212 RIE-VS-LSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER  282 (295)
T ss_dssp             CEE-ES-CTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE
T ss_pred             eEE-EE-EecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE
Confidence            110 00 111233 8999999994332      24578889999999999999996433 44566666665 77665433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.92  E-value=1.3e-08  Score=91.56  Aligned_cols=115  Identities=15%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcc-cCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCE-AFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e-~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.++..++... ....|+++|.++.++..+.++    ++  +......+. .+......+|.++
T Consensus        36 l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~  114 (196)
T PRK07402         36 LRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC  114 (196)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence            343445799999999999998887531 114699999999999877653    32  112211111 1111224467765


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcc
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGM  298 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l  298 (334)
                      ...       ...++.++.++.|+|+|||.+++..... .+..+.+.++.+
T Consensus       115 ~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  158 (196)
T PRK07402        115 IEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL  158 (196)
T ss_pred             EEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence            431       2357899999999999999999987543 344455555444

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.90  E-value=2.1e-09  Score=94.29  Aligned_cols=73  Identities=16%  Similarity=0.091  Sum_probs=57.3

Q ss_pred             EeccCChhhHHHHHHcCc---------cchhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeE
Q 019879          209 VPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGA  278 (334)
Q Consensus       209 v~vD~s~~~L~~a~~Rgl---------i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~  278 (334)
                      +++|.|++||++|.+|.-         +......++++ +++ ++||+|++..+++++.   +...+|+|++|+|||||.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~   76 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSR   76 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeE
Confidence            478999999999865521         22333445566 466 8999999999998864   578999999999999999


Q ss_pred             EEEEeCh
Q 019879          279 IIIRDEV  285 (334)
Q Consensus       279 lii~D~~  285 (334)
                      |++.|..
T Consensus        77 l~i~d~~   83 (160)
T PLN02232         77 VSILDFN   83 (160)
T ss_pred             EEEEECC
Confidence            9998754

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.90  E-value=1.5e-08  Score=102.09  Aligned_cols=137  Identities=12%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchh-hhhcccCCCCCCccceEEechhhc-
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIY-HDWCEAFSTYPRTYDLIHAHGLFS-  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~-~d~~e~l~~yp~sFDlVha~~vfs-  254 (334)
                      .+|||+|||+|.++..|+.... ..+|+++|+|+.|++.+.++    +. +... .|+.+...+..++||+|+|+-=+. 
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence            5899999999999988876321 14799999999999987664    22 1111 222222111226899999973110 


Q ss_pred             ----ccc-------------CcC----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE--EecCCCCC
Q 019879          255 ----LYK-------------DKC----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK--MVDHEDGP  311 (334)
Q Consensus       255 ----~~~-------------~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~--~~~~~~~~  311 (334)
                          +..             ...    .+..++.+..+.|+|||.+++--..+.-+.+++++....|...  ..|.-   
T Consensus       332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~---  408 (423)
T PRK14966        332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA---  408 (423)
T ss_pred             cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC---
Confidence                000             000    1347788888999999999987666666778888877777543  22322   


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                       +.++++++++.
T Consensus       409 -G~dR~v~~~~~  419 (423)
T PRK14966        409 -GLDRVTLGKYM  419 (423)
T ss_pred             -CCcEEEEEEEh
Confidence             57899998753

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.89  E-value=2.1e-08  Score=94.77  Aligned_cols=123  Identities=15%  Similarity=0.272  Sum_probs=91.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCC-CCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~-~yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|..+.+|+++--. ..++++++.+.+.+.|.+-    ++   +.++++....+. ..+ .+||+|+||
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence            3689999999999999999887212 4689999998888776543    12   233333222222 234 679999998


Q ss_pred             hh---------------hccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879          251 GL---------------FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       251 ~v---------------fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      ==               ..|+.-.++++.+++-..++|||||.+.+--..+-+..|-..+++++|...
T Consensus       123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k  190 (248)
T COG4123         123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK  190 (248)
T ss_pred             CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence            21               112233467889999999999999999999999988888999999999875

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=5.7e-09  Score=97.87  Aligned_cols=105  Identities=12%  Similarity=0.194  Sum_probs=79.2

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccC---CCCCCccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAF---STYPRTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l---~~yp~sFDlVha~  250 (334)
                      ..+||.+|||.|+..--|++- +-...-|.+.|.|++.+.+..++-.      ...+.|.+.+-   ++.++++|+|++-
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            348999999999977666652 2112568999999999998776532      22344444432   2334999999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +||+.+. ...+..++..+.|+|||||.++++|--.
T Consensus       152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            9999764 4568999999999999999999998643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.87  E-value=8.4e-09  Score=100.37  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCCCCCCccceEEechh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ....+|||.|||+|+++..+...+   ..++++|+++.|+..+..+    |+..  .....+..++..+++||+|+++--
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            345689999999999987766554   4689999999998865543    3322  222222333322389999999733


Q ss_pred             hcc---cc-C--cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccc
Q 019879          253 FSL---YK-D--KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRW  300 (334)
Q Consensus       253 fs~---~~-~--~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W  300 (334)
                      +..   .. +  ......+|.++.|+|||||++++..+..  ..+++.+....|
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~  309 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR  309 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence            321   00 0  0124789999999999999998876654  133445566666

This family is found exclusively in the Archaea.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.85  E-value=1.6e-08  Score=95.29  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=85.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCC-CCCccceEEechhh--
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFST-YPRTYDLIHAHGLF--  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~-yp~sFDlVha~~vf--  253 (334)
                      ..+|||+|||+|.++..|+.... ...|+++|.++.+++.+.+.    |..-...|+.+.++. +.++||+|+++-=+  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            35899999999999998876411 14689999999999877653    211111122222211 23679999998311  


Q ss_pred             ----ccccC-------c------C----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCC
Q 019879          254 ----SLYKD-------K------C----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHED  309 (334)
Q Consensus       254 ----s~~~~-------~------c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~  309 (334)
                          ..+..       .      .    -+..++....++|+|||.+++.-..+....+..++....++..+..|++
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~  242 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE  242 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence                11100       0      0    1347888888999999999998777666778888888888888776664

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PTZ00146 fibrillarin; Provisional

Probab=98.85  E-value=3.9e-08  Score=94.97  Aligned_cols=98  Identities=14%  Similarity=0.048  Sum_probs=65.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChh----hHHHHHHcC-ccchhhhhcccC--CCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYERG-LIGIYHDWCEAF--STYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~----~L~~a~~Rg-li~~~~d~~e~l--~~yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.-...-.|+++|+++.    ++..+.+|. +..+..|.....  .....+||+|++...
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence            3479999999999999999885211125899999975    555665553 222333322111  111268999998853


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                           +..+...++.+++|+|||||.|+|.
T Consensus       212 -----~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        212 -----QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             -----CcchHHHHHHHHHHhccCCCEEEEE
Confidence                 1224556778999999999999995

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=2.4e-08  Score=95.77  Aligned_cols=138  Identities=19%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccceEEec--hhhc--
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDLIHAH--GLFS--  254 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDlVha~--~vfs--  254 (334)
                      +|||+|||+|-.|.+|+..... .+|+++|+|++.+..|.+.    |+.....-...-|....+.||+|+||  ++=.  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~  191 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED  191 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence            8999999999999999886432 5799999999999887543    43211111111233444799999998  1110  


Q ss_pred             -ccc--------------Cc---CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCCce
Q 019879          255 -LYK--------------DK---CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEK  316 (334)
Q Consensus       255 -~~~--------------~~---c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~  316 (334)
                       +..              ..   .....++.+..++|+|||.+++.......+.+++++....+...+..+. .-.+.++
T Consensus       192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~-d~~g~~r  270 (280)
T COG2890         192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLK-DLFGRDR  270 (280)
T ss_pred             cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEe-cCCCceE
Confidence             110              00   1134789999999999999999887666677888877777421111122 1224666


Q ss_pred             EEEEEe
Q 019879          317 ILVAVK  322 (334)
Q Consensus       317 ~l~~~K  322 (334)
                      +.++++
T Consensus       271 v~~~~~  276 (280)
T COG2890         271 VVLAKL  276 (280)
T ss_pred             EEEEEe
Confidence            666654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.82  E-value=2.3e-08  Score=90.80  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-C-CccceE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-P-RTYDLI  247 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p-~sFDlV  247 (334)
                      +......+|||+|||+|.++..|+...   ..|+++|.+++++..+.++    |+  +...+...  ...+ + ++||+|
T Consensus        74 l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~I  148 (212)
T PRK00312         74 LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPAYAPFDRI  148 (212)
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCcCCCcCEE
Confidence            344445799999999999998777653   2689999999998877654    32  11122111  1122 2 789999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++..+++         +..++.+.|+|||.+++.-.
T Consensus       149 ~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPE---------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence            99865443         34577899999999998755

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.79  E-value=4.5e-08  Score=94.95  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=74.7

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCC-CccceEEech----
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYP-RTYDLIHAHG----  251 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp-~sFDlVha~~----  251 (334)
                      .+|||+|||+|.++..|+.... ..+|+++|+|+.++..+.+.    |+...+.-.+.++ .+++ ++||+|+|+-    
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence            6899999999999999987521 24799999999999977654    3311111111121 2334 6899999971    


Q ss_pred             --h-------hccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcc
Q 019879          252 --L-------FSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGM  298 (334)
Q Consensus       252 --v-------fs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l  298 (334)
                        -       +.|.+..         .....++.++.++|+|||.+++-.... ...+..++...
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~  277 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV  277 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence              0       1111110         113578999999999999999965544 33466665543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.78  E-value=4.3e-08  Score=101.09  Aligned_cols=138  Identities=15%  Similarity=0.189  Sum_probs=86.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCC-CccceEEech---
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHAHG---  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp-~sFDlVha~~---  251 (334)
                      ..+|||+|||+|.++..|+..- ....|+++|+|+.+++.+.+.    ++...+.-.+.+ +..++ ++||+|+|+-   
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            4689999999999998887641 114799999999999987765    321111101111 22344 6899999962   


Q ss_pred             -----------hhcccc-----Cc----CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCC
Q 019879          252 -----------LFSLYK-----DK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGP  311 (334)
Q Consensus       252 -----------vfs~~~-----~~----c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~  311 (334)
                                 +..|.+     ..    ..+..++.++.++|+|||.+++.-....-+.+..++....|.......+  -
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D--~  295 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKD--L  295 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEec--C
Confidence                       111100     00    1134678899999999999999766555567777777777764322111  1


Q ss_pred             CCCceEEEEE
Q 019879          312 LVPEKILVAV  321 (334)
Q Consensus       312 ~~~e~~l~~~  321 (334)
                      .+.++++++.
T Consensus       296 ~g~~R~v~~~  305 (506)
T PRK01544        296 QGHSRVILIS  305 (506)
T ss_pred             CCCceEEEec
Confidence            1467777764

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.73  E-value=6.8e-08  Score=91.67  Aligned_cols=92  Identities=22%  Similarity=0.422  Sum_probs=74.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCCCCccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      +..++||+|+|-|+..+.|+..   .-+|...++|..|.....+||... ...+|.+    -+..||+|-|-+|+    |
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL----D  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL----D  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh----h
Confidence            4678999999999999999763   246899999999999889999732 2233432    23689999998887    4


Q ss_pred             cC-CHHHHHHHHHHhhcCCeEEEEE
Q 019879          259 KC-NIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       259 ~c-~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +| ++..+|.+|++.|+|+|.+++.
T Consensus       163 Rc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  163 RCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            67 4889999999999999999996

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK04457 spermidine synthase; Provisional

Probab=98.72  E-value=1.9e-07  Score=88.52  Aligned_cols=102  Identities=15%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc------chhhhhccc-CCCCCCccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI------GIYHDWCEA-FSTYPRTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li------~~~~d~~e~-l~~yp~sFDlVha~  250 (334)
                      ...++|||+|||+|.++..++.... ...|+.+|+++++++.+.+.- +.      .+++..+.. +...+.+||+|++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            3568999999999999998877521 257999999999999888752 21      112111111 22335789999986


Q ss_pred             hhhccc--cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLY--KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~--~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      . |+..  +.......++.++.++|+|||.+++.
T Consensus       144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            3 3321  11112368999999999999999984

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.70  E-value=5e-08  Score=90.08  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             cccchhhhhhHHHHHHHHHHH------------hhcCC-CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH
Q 019879          153 ESYQEDSNKWKKHVNAYKKIN------------RLLDS-GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG  219 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll------------~~l~~-~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~  219 (334)
                      +.|.+|-+.|...-.-|....            ..|.. .....|-|+|||-+.+|..+.+.    ..|...|.-...  
T Consensus        32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~n--  105 (219)
T PF05148_consen   32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAPN--  105 (219)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-SS--
T ss_pred             HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccCCC--
Confidence            567777776665555554432            22222 23468999999999999877543    346777764211  


Q ss_pred             HHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHH
Q 019879          220 VIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIV  295 (334)
Q Consensus       220 ~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~  295 (334)
                         + .  .+..|. ... |.+ ++.|++++...|.    ..++..++.|.+|||||||.|+|.+-..   .++..-+.+
T Consensus       106 ---~-~--Vtacdi-a~v-PL~~~svDv~VfcLSLM----GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~  173 (219)
T PF05148_consen  106 ---P-R--VTACDI-ANV-PLEDESVDVAVFCLSLM----GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKAL  173 (219)
T ss_dssp             ---T-T--EEES-T-TS--S--TT-EEEEEEES-------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHH
T ss_pred             ---C-C--EEEecC-ccC-cCCCCceeEEEEEhhhh----CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHH
Confidence               1 1  112221 233 455 9999998874443    3568999999999999999999998654   234444558


Q ss_pred             hcccceEEEecCC
Q 019879          296 GGMRWDTKMVDHE  308 (334)
Q Consensus       296 ~~l~W~~~~~~~~  308 (334)
                      .++.++....|..
T Consensus       174 ~~~GF~~~~~d~~  186 (219)
T PF05148_consen  174 KKLGFKLKSKDES  186 (219)
T ss_dssp             HCTTEEEEEEE--
T ss_pred             HHCCCeEEecccC
Confidence            8889988876654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK00811 spermidine synthase; Provisional

Probab=98.69  E-value=7.1e-08  Score=92.37  Aligned_cols=105  Identities=11%  Similarity=0.132  Sum_probs=69.7

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c-----cchhhhhcccC-CCCCCccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-----IGIYHDWCEAF-STYPRTYD  245 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l-----i~~~~d~~e~l-~~yp~sFD  245 (334)
                      ..+.++|||+|||.|+++..+++.. .+.+|+.+|+++.+++.+.+.-      +     +..++..+..+ ...+++||
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            3457899999999999999998762 2357999999999999887631      1     11111111111 12237999


Q ss_pred             eEEechhhccccCc-CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~-c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|++...-...... ---+.+++++.|+|+|||.+++.-
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            99986422211100 012578899999999999999863

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.65  E-value=2e-07  Score=94.08  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCC-CC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFST-YP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~-yp-~sFDlVh  248 (334)
                      +......+|||+|||+|+.+..+++.... ..|+++|.++.++..+.++    |+ +......+..++. ++ ++||.|+
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl  318 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL  318 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence            44445679999999999999999875321 4699999999999877654    32 1111111222222 34 7899999


Q ss_pred             ech------hhcccc------CcCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHG------LFSLYK------DKCN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~------vfs~~~------~~c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++.      ++.+-+      +..+       ...+|.+..++|||||.+++++.
T Consensus       319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            432      221110      0011       23789999999999999999873

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.65  E-value=1.7e-07  Score=94.64  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=78.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCC----CCCCccc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFS----TYPRTYD  245 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~----~yp~sFD  245 (334)
                      +......+|||+|||+|+.+.+|++.--....|+++|.++.+++.+.++    |+.  .........++    .++++||
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence            4444457999999999999988877411113699999999999876553    431  22211122222    1237999


Q ss_pred             eEEec------hhhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhcc-cce
Q 019879          246 LIHAH------GLFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGGM-RWD  301 (334)
Q Consensus       246 lVha~------~vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~l-~W~  301 (334)
                      .|++.      .++.+-++      ..+       ...+|.++.++|||||.|+.++-.    +....|+.+++.. .|.
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~  407 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK  407 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence            99963      34433221      011       357899999999999999988632    3334555555543 344

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.64  E-value=1.1e-07  Score=86.80  Aligned_cols=128  Identities=15%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             cchhhhhhHHHHHHHH-HHHhhcCCCCCceEeeecccccH----HHHHHHh--C--CCcEEEEEeccCChhhHHHHHHcC
Q 019879          155 YQEDSNKWKKHVNAYK-KINRLLDSGRYRNIMDMNAGFGG----FAAAIQS--S--KLWVMNVVPTLADKNTLGVIYERG  225 (334)
Q Consensus       155 f~~d~~~W~~~v~~y~-~ll~~l~~~~~r~VLD~GCG~G~----faa~L~~--~--~v~v~nVv~vD~s~~~L~~a~~Rg  225 (334)
                      |-.|...|....+... .++.....++.-+|..+||++|.    +|..|.+  .  ..+-..|.++|+++.+|+.|.+ |
T Consensus         5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G   83 (196)
T PF01739_consen    5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G   83 (196)
T ss_dssp             TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred             ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence            4556666655555432 12222233456899999999995    5555555  1  2234789999999999987643 2


Q ss_pred             c---------cc---------------------------hhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHH
Q 019879          226 L---------IG---------------------------IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEM  269 (334)
Q Consensus       226 l---------i~---------------------------~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em  269 (334)
                      .         ..                           ..|+..+ .++..+.||+|+|.+||-++. ......++..+
T Consensus        84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l  161 (196)
T PF01739_consen   84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRL  161 (196)
T ss_dssp             EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred             CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHH
Confidence            1         00                           0122222 122339999999999999874 34567999999


Q ss_pred             HHhhcCCeEEEEEeCh
Q 019879          270 DRILRPEGAIIIRDEV  285 (334)
Q Consensus       270 ~RVLRPGG~lii~D~~  285 (334)
                      ++.|+|||+|++....
T Consensus       162 ~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  162 HRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             GGGEEEEEEEEE-TT-
T ss_pred             HHHcCCCCEEEEecCc
Confidence            9999999999998653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.63  E-value=1.5e-07  Score=94.76  Aligned_cols=108  Identities=22%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchh--hh-hcccCCCC-C-Cccce
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIY--HD-WCEAFSTY-P-RTYDL  246 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~--~d-~~e~l~~y-p-~sFDl  246 (334)
                      +......+|||+|||+|+.+.++++.-- ...|+++|.++.++..+.++    |+....  .+ .....+++ + ++||.
T Consensus       234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~  312 (426)
T TIGR00563       234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR  312 (426)
T ss_pred             hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence            4444568999999999999998887421 24699999999999876544    432111  11 01111221 3 78999


Q ss_pred             EEec------hhhccccCc------CC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAH------GLFSLYKDK------CN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~------~vfs~~~~~------c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++.      .++.+.++-      .+       ...+|.++.|+|||||.+++++.
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9853      345432210      00       24799999999999999999863

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.62  E-value=1.1e-07  Score=96.25  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCC-CCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTY-PRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~y-p~sFDlVh  248 (334)
                      ++.....+|||+|||+|+.+.++++.-.-...|+++|.++.++..+.++    |+.  ...+.....++.+ +++||.|.
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl  312 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRIL  312 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEE
Confidence            3444557999999999999888876410113699999999999877654    431  1222212223323 37899998


Q ss_pred             ech---hhccccCcC----------------CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHG---LFSLYKDKC----------------NIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~---vfs~~~~~c----------------~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +..   .+..+....                ...++|.+..+.|||||.++.++.
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            641   122111000                114679999999999999999874

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.61  E-value=1.9e-07  Score=91.30  Aligned_cols=95  Identities=14%  Similarity=0.009  Sum_probs=62.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.+++.|++.......|+++|.++++++.+.++    |+.  ...+..+....+....||+|++...+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~  159 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV  159 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence            447999999999999999887421112489999999999877653    331  11111111111222689999987433


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .         .+...+.++|+|||.+++..
T Consensus       160 ~---------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        160 D---------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             H---------HhHHHHHHhcCCCCEEEEEe
Confidence            2         23445788999999988854

>TIGR00417 speE spermidine synthase

Probab=98.61  E-value=2.1e-07  Score=88.32  Aligned_cols=105  Identities=12%  Similarity=0.158  Sum_probs=69.9

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c--------cchhh-hhcccCCCCCCccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L--------IGIYH-DWCEAFSTYPRTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l--------i~~~~-d~~e~l~~yp~sFD  245 (334)
                      ...+.++||++|||+|+++..+++.. .+.+++.+|+++++++.+.+.-  +        +.... |-.+-+...+++||
T Consensus        69 ~~~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD  147 (270)
T TIGR00417        69 THPNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD  147 (270)
T ss_pred             cCCCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence            34456799999999999998888764 2357999999999988776531  0        00111 10010111247999


Q ss_pred             eEEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|++........ ...  ...+++.+.|+|+|||.+++..
T Consensus       148 vIi~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       148 VIIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EEEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            999875422111 112  3578899999999999999864

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=98.59  E-value=6e-07  Score=89.26  Aligned_cols=148  Identities=10%  Similarity=0.043  Sum_probs=87.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-Cc------------cchhhhhccc-CCCCCC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GL------------IGIYHDWCEA-FSTYPR  242 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gl------------i~~~~d~~e~-l~~yp~  242 (334)
                      ...+.++||++|||+|..++.+++.+ .+.+|+.+|++++++++|.+. .+            +......+.. +...++
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~  225 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS  225 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence            34557899999999999988888754 246799999999999998852 11            0111111111 122237


Q ss_pred             ccceEEechhhcc--ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecCCCCCCC-C
Q 019879          243 TYDLIHAHGLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHEDGPLV-P  314 (334)
Q Consensus       243 sFDlVha~~vfs~--~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~~~~~~~-~  314 (334)
                      +||+|++...-..  .....--..++..+.|.|+|||.+++....     +.+..+.+.++.....+..+..---+.. .
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~  305 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD  305 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence            8999998832110  000011247899999999999999887542     2223344444444444443322111111 1


Q ss_pred             ceEEEEEeccc
Q 019879          315 EKILVAVKQYW  325 (334)
Q Consensus       315 e~~l~~~K~~w  325 (334)
                      =.+++|.|.-.
T Consensus       306 WgF~~as~~~~  316 (374)
T PRK01581        306 WGFHIAANSAY  316 (374)
T ss_pred             eEEEEEeCCcc
Confidence            45777777544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.59  E-value=1.2e-07  Score=92.97  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---------------ccc-hhhhhcc--cC-CCC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---------------LIG-IYHDWCE--AF-STY  240 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---------------li~-~~~d~~e--~l-~~y  240 (334)
                      ...+|||||||-||=.......++  ..++++|++...++.|.+|-               ... .+...|-  .+ ..+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            568999999999997666666553  57999999999999888874               000 0111110  00 112


Q ss_pred             C---CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          241 P---RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       241 p---~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +   ..||+|-|...||+. ........+|.-+.+.|||||+||.+.+..
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence            2   599999999889874 333356789999999999999999997654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.57  E-value=2e-07  Score=86.20  Aligned_cols=103  Identities=18%  Similarity=0.284  Sum_probs=74.0

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch-hhhhcccCCCCCCccceEEechhh
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      .....+.++|||+|+|+|.++.+++++.-. ..++-.|.. ..++.+.+..-+.. -+|.   |.++|. +|+++.+++|
T Consensus        95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL  168 (241)
T PF00891_consen   95 AFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLP-EVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL  168 (241)
T ss_dssp             HSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-H-HHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred             cccccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccH-hhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence            445667789999999999999999874222 357778884 67776666221211 1111   245667 9999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCC--eEEEEEeC
Q 019879          254 SLYKDKCNIEDILLEMDRILRPE--GAIIIRDE  284 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPG--G~lii~D~  284 (334)
                      |++.+ .+...+|+.+.+.|+||  |.|+|.|.
T Consensus       169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            98763 46779999999999999  99999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.57  E-value=3e-07  Score=87.07  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|+.+..|++.-.....|+++|.++.+++.+.++    |+  +...+..+..++...+.||.|++
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            3334457899999999999988876311112599999999998876543    33  12222222223222367999986


Q ss_pred             ch------hhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HG------LFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~------vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .-      ++.+-++      ..+       ...+|.+..+.|||||.|+.++.
T Consensus       147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            41      2221110      001       13699999999999999999864

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.57  E-value=2.9e-07  Score=93.20  Aligned_cols=109  Identities=20%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCC-CCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFS-TYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~-~yp~sFDlVh  248 (334)
                      +...+..+|||+|||+|+++..+++.-.....|+++|+++++++.+.++    |+.  ...+.....++ +++++||+|+
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl  325 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKIL  325 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEE
Confidence            3334457899999999999988887411113699999999998876553    431  22221111222 3458999998


Q ss_pred             ech------hhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHG------LFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~------vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++.      ++.+-++      ..+       ...+|.++.|+|||||.++.+..
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence            752      2221110      011       13689999999999999998753

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=2.5e-07  Score=93.80  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|+.+..+++.-.-...|+++|.++.+++.+.++    |+.  .........++ .+++||+|++
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            4444457999999999998887776311113699999999999876544    431  12211112221 1278999985


Q ss_pred             c------hhhcccc------CcCC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 H------GLFSLYK------DKCN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~------~vfs~~~------~~c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .      .++.+-+      ...+       ...+|.++.++|||||.+++++.
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3      2222110      0011       23689999999999999999973

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.53  E-value=2.9e-07  Score=83.79  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccc--hhhhhccc-CC-CCC-CccceEEechh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIG--IYHDWCEA-FS-TYP-RTYDLIHAHGL  252 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~--~~~d~~e~-l~-~yp-~sFDlVha~~v  252 (334)
                      ..+||+|||.|.|...++..... .|++|+|.....+..+.+    +++..  .++..+.. +. .++ +++|-|+.+  
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence            38999999999999999885322 589999999876664433    35421  11111111 11 134 999999886  


Q ss_pred             hc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcc
Q 019879          253 FS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM  298 (334)
Q Consensus       253 fs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l  298 (334)
                      |.       |.+.+---..+|.++.|+|+|||.|.+.+.. ++.+.+.+.+...
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES  149 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            33       2222222358999999999999999997655 4666666665553

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.52  E-value=4.8e-07  Score=96.77  Aligned_cols=123  Identities=14%  Similarity=0.157  Sum_probs=80.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhh-hhcccCCCCCCccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYH-DWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~-d~~e~l~~yp~sFDlVha~~  251 (334)
                      .++|||+|||+|+|+.+++..|..  .|+++|.|+.+++.+.+.    |+.    ..++ |..+.+..+.++||+|+++-
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            479999999999999999987643  599999999999977653    331    1111 21111111357899999861


Q ss_pred             -hhccccC-------cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEe
Q 019879          252 -LFSLYKD-------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       252 -vfs~~~~-------~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~  305 (334)
                       .|.....       ..+...++....++|+|||.+++......+....+.+....+.+...
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence             1111000       11345788889999999999999876654444345555556666543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.50  E-value=9.6e-07  Score=82.39  Aligned_cols=98  Identities=13%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhh-hcccCCC----C-CCcc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHD-WCEAFST----Y-PRTY  244 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d-~~e~l~~----y-p~sF  244 (334)
                      .+.++|||+|||+|.-+..|+.. +. ...|+.+|.+++++..|.+.    |+.   ..... ..+.++.    . ..+|
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            34689999999999866666542 11 13699999999988877553    331   11111 1111111    2 3689


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|+...-      ......++.++.|.|||||.+++.+
T Consensus       146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            99988621      2345678999999999999988753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.7e-06  Score=83.80  Aligned_cols=121  Identities=17%  Similarity=0.280  Sum_probs=78.1

Q ss_pred             hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCCCccceEE
Q 019879          174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDLIH  248 (334)
Q Consensus       174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp~sFDlVh  248 (334)
                      +.+......+|||+|||+|-+++.|++..- ...|+-+|.+...++.+++.    ++.+. .-|..+ +.+-..+||+|+
T Consensus       152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~kfd~Ii  229 (300)
T COG2813         152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVEGKFDLII  229 (300)
T ss_pred             HhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccccccccEEE
Confidence            334333334999999999999999998643 24689999987777766542    22221 111111 122226999999


Q ss_pred             echhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHh
Q 019879          249 AHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVG  296 (334)
Q Consensus       249 a~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~  296 (334)
                      ||-=||--.+-.  -.+.++.+-.+-|++||.|.|--+.  .+-.++++++.
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg  281 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG  281 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence            997776322111  1248899999999999988876552  24556666555

>PLN02366 spermidine synthase

Probab=98.50  E-value=5.4e-07  Score=87.65  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCC-Cccce
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYP-RTYDL  246 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp-~sFDl  246 (334)
                      .+.++||++|||.|+++..+++.+ .+..|+.+|+++.+++.+++.-      +    +..+...+.. +...+ +.||+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            457899999999999999998863 3467888999988888876641      1    1111111111 12233 78999


Q ss_pred             EEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |++...-.+..... --..+++.+.|.|+|||.+++.
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            99864322211000 1247899999999999999874

>PHA03411 putative methyltransferase; Provisional

Probab=98.49  E-value=3.4e-07  Score=87.90  Aligned_cols=98  Identities=9%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCC--CCccceEEechhhcccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTY--PRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~y--p~sFDlVha~~vfs~~~  257 (334)
                      ..+|||+|||+|.++..++.+.. ..+|+++|+++.|++.++++-. +...   +.++..+  +++||+|+++--|.|+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v---~~D~~e~~~~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWI---TSDVFEFESNEKFDVVISNPPFGKIN  140 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEE---ECchhhhcccCCCcEEEEcCCccccC
Confidence            46899999999999888876421 1479999999999998876521 1111   1222222  37899999987777642


Q ss_pred             Cc--CC---------------HHHHHHHHHHhhcCCeEEEEE
Q 019879          258 DK--CN---------------IEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       258 ~~--c~---------------~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..  .+               +...+....++|+|+|.+++.
T Consensus       141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            11  11               357888999999999987664

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.48  E-value=5.8e-07  Score=79.60  Aligned_cols=140  Identities=17%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhh---------cccCCCCCCccce
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDW---------CEAFSTYPRTYDL  246 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~---------~e~l~~yp~sFDl  246 (334)
                      +..+...+|||+||++|||+..+.++......|+++|..+. -..   ++......|.         .+.+..-...||+
T Consensus        19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl   94 (181)
T PF01728_consen   19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDL   94 (181)
T ss_dssp             S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred             CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccc---cceeeeecccchhhHHHhhhhhccccccCcce
Confidence            44446699999999999999999998745578999999743 111   1211111111         1111111168999


Q ss_pred             EEechhhccccCc--------CCHHHHHHHHHHhhcCCeEEEEEe-----ChhhHHHHHHHHhcccceEEEecCCCCCCC
Q 019879          247 IHAHGLFSLYKDK--------CNIEDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLV  313 (334)
Q Consensus       247 Vha~~vfs~~~~~--------c~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~  313 (334)
                      |+|...+..-.++        .-....|.=+...|||||.+++--     ..+.+..++..++.+++.  .+ .-.++..
T Consensus        95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp-~~sr~~s  171 (181)
T PF01728_consen   95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KP-PSSRSES  171 (181)
T ss_dssp             EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E--TTSBTTC
T ss_pred             eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--EC-cCCCCCc
Confidence            9998643321100        011244444557799999888853     234566666666665442  21 2233446


Q ss_pred             CceEEEEEe
Q 019879          314 PEKILVAVK  322 (334)
Q Consensus       314 ~e~~l~~~K  322 (334)
                      .|.||||++
T Consensus       172 ~E~Ylv~~~  180 (181)
T PF01728_consen  172 SEEYLVCRG  180 (181)
T ss_dssp             BEEEEESEE
T ss_pred             cEEEEEEcC
Confidence            899999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.48  E-value=4.6e-07  Score=82.31  Aligned_cols=111  Identities=13%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCcc---chh-hhhcccCCCCCCccceEEechhh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGLI---GIY-HDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgli---~~~-~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      .+|||+|||.|.+...|++.++. -.++++|.|+..+..|    .++|+.   ... .|...+ -.+++.||+|+=-..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence            49999999999999999998764 3489999999887744    444553   221 222222 1234888888754433


Q ss_pred             ccc---cCc--CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879          254 SLY---KDK--CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI  294 (334)
Q Consensus       254 s~~---~~~--c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~  294 (334)
                      -.+   ++.  ..+...+--+.++|+|||+|+|+.-.-...++.+.
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~  192 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE  192 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence            321   111  12346778889999999999999765444443333

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.47  E-value=4.2e-07  Score=79.94  Aligned_cols=101  Identities=11%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-CccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      +......+|||+|||+|.++..|++++   ..|+++|.++.+++.+.++-.    +..++..+..+ +++ .+||.|+++
T Consensus         9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~~~~~d~vi~n   84 (169)
T smart00650        9 ANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLPKLQPYKVVGN   84 (169)
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-CccccCCCEEEEC
Confidence            344445789999999999999999874   469999999999998876521    22233222333 244 569999988


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .-++. . ...+..++.+..  +.++|.+++...
T Consensus        85 ~Py~~-~-~~~i~~~l~~~~--~~~~~~l~~q~e  114 (169)
T smart00650       85 LPYNI-S-TPILFKLLEEPP--AFRDAVLMVQKE  114 (169)
T ss_pred             CCccc-H-HHHHHHHHhcCC--CcceEEEEEEHH
Confidence            54432 1 122344444322  568899988753

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.46  E-value=3.7e-07  Score=85.27  Aligned_cols=99  Identities=8%  Similarity=0.021  Sum_probs=73.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-Ccc--------------chhhhhcccCCCCC---
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLI--------------GIYHDWCEAFSTYP---  241 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli--------------~~~~d~~e~l~~yp---  241 (334)
                      ...+||+.|||.|.-+.+|+++|.   +|+++|+|+..++.++++ ++.              ..+.-+|.+|-.++   
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            347999999999999999999985   699999999888876552 110              01112233332221   


Q ss_pred             ---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          242 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       242 ---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                         +.||+|+=...|.+++ ...-.+.+.-|.++|+|||.+++-
T Consensus       120 ~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             cccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence               5799999888898885 334578999999999999987664

>PRK03612 spermidine synthase; Provisional

Probab=98.46  E-value=8.6e-07  Score=91.78  Aligned_cols=124  Identities=13%  Similarity=0.106  Sum_probs=79.8

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c------------cchhhhhccc-CCCCCCcc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L------------IGIYHDWCEA-FSTYPRTY  244 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l------------i~~~~d~~e~-l~~yp~sF  244 (334)
                      .+.++|||+|||+|..+..+++++ .+..|+.+|+++++++.+++.. +            +......+.. +...+++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            356899999999999999888764 2357999999999999988731 1            1111111111 12234899


Q ss_pred             ceEEechhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEE
Q 019879          245 DLIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       245 DlVha~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~  303 (334)
                      |+|+++..........  --+.+++++.|.|||||.+++...     .+....+.+.+++....+.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~  440 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT  440 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence            9999983322111000  124688999999999999999643     2344455555666655444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.46  E-value=1.6e-06  Score=82.56  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=70.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ...|-|+|||-+.+|..-. ..|..+++++++..           +  +..|. ... |.+ +|.|++++-..|.    .
T Consensus       181 ~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~~-----------V--~~cDm-~~v-Pl~d~svDvaV~CLSLM----g  240 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIASSER-HKVHSFDLVAVNER-----------V--IACDM-RNV-PLEDESVDVAVFCLSLM----G  240 (325)
T ss_pred             ceEEEecccchhhhhhccc-cceeeeeeecCCCc-----------e--eeccc-cCC-cCccCcccEEEeeHhhh----c
Confidence            3579999999998775211 23444445444321           1  11111 123 455 9999987763332    3


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHHhcccceEEEecCC
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVDHE  308 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~~~l~W~~~~~~~~  308 (334)
                      .++.+++.|.+|||||||.++|.+-..   .+....+-+.+|.+++...|..
T Consensus       241 tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  241 TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS  292 (325)
T ss_pred             ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence            578999999999999999999998654   2344555588899988766554

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.45  E-value=6.2e-06  Score=74.94  Aligned_cols=144  Identities=21%  Similarity=0.255  Sum_probs=93.3

Q ss_pred             CCCccccchh--hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879          149 GVSAESYQED--SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--  224 (334)
Q Consensus       149 g~~~e~f~~d--~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--  224 (334)
                      +...+.|..+  .-.-|+-+..-  .++.|...+...++|+|||||+.+..++..+ -...|+++|.++++++.+.+.  
T Consensus         3 gipD~~F~~~~~~p~TK~EIRal--~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~   79 (187)
T COG2242           3 GIPDELFERDEGGPMTKEEIRAL--TLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAA   79 (187)
T ss_pred             CCCchhhccCCCCCCcHHHHHHH--HHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHH
Confidence            3445566666  23334555442  2334566667899999999999988887322 125799999998888865432  


Q ss_pred             --Ccc--chhhhhc-ccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcc
Q 019879          225 --GLI--GIYHDWC-EAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGM  298 (334)
Q Consensus       225 --gli--~~~~d~~-e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l  298 (334)
                        |..  .....++ +.++.++ +||.|+...-       -.++.+|......|||||.+++.-- .+....+-+.++.+
T Consensus        80 ~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242          80 RFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             HhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence              321  1222222 2233344 8999988743       3578999999999999999999853 44555555667777


Q ss_pred             cc-eEE
Q 019879          299 RW-DTK  303 (334)
Q Consensus       299 ~W-~~~  303 (334)
                      .+ ++.
T Consensus       152 g~~ei~  157 (187)
T COG2242         152 GGREIV  157 (187)
T ss_pred             CCceEE
Confidence            77 544

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.43  E-value=4.1e-07  Score=84.37  Aligned_cols=102  Identities=20%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----Cccc-hhhhhcccCCCCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG-IYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----gli~-~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ...+.||.|||.|..+..|+-+-+.  .|.-+|..+..++.|.+.     +-++ .+..--+++-|-+++||+|++..++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            4689999999999999988766443  355566777888888742     1122 2221123444445899999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .|+.+ .++..+|+.+...|+|+|.+++-++
T Consensus       133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCH-HHHHHHHHHHHHhCcCCcEEEEEec
Confidence            99974 6889999999999999999999865

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.42  E-value=1.5e-06  Score=67.39  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=61.5

Q ss_pred             EeeecccccHHH--HHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchh-hhhcccCCCCCC--ccceEEechh
Q 019879          184 IMDMNAGFGGFA--AAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIY-HDWCEAFSTYPR--TYDLIHAHGL  252 (334)
Q Consensus       184 VLD~GCG~G~fa--a~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~-~d~~e~l~~yp~--sFDlVha~~v  252 (334)
                      ++|+|||+|...  +.+...+   ..++++|.++.++..+..+..      +... .+......++..  +||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            999999999854  3333332   356779999888887444331      1111 121111124443  89999 5544


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ..+...   ....+.++.|+|+|+|.+++.+..
T Consensus       128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            433322   789999999999999999998764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.41  E-value=1.4e-06  Score=88.15  Aligned_cols=121  Identities=17%  Similarity=0.320  Sum_probs=77.1

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCC--CCC-
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFS--TYP-  241 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~--~yp-  241 (334)
                      ++..+......+|||+|||+|.++..|++..   ..|+++|.|+.|++.+.+.    |+  +.... |..+.+.  +++ 
T Consensus       289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~  365 (443)
T PRK13168        289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWAL  365 (443)
T ss_pred             HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhc
Confidence            3333443345799999999999999998875   3689999999999987653    32  11111 2212121  243 


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccceEE
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDTK  303 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~~~  303 (334)
                      ++||+|+++      +.+..+..++..+.+ |+|++.++++=++..+ .-+..+.. -.|++.
T Consensus       366 ~~fD~Vi~d------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~  420 (443)
T PRK13168        366 GGFDKVLLD------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLK  420 (443)
T ss_pred             CCCCEEEEC------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEE
Confidence            789999886      334445566666655 6999999999655533 23444432 235544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.39  E-value=4.6e-07  Score=83.59  Aligned_cols=102  Identities=18%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC--Cc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP--RT  243 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp--~s  243 (334)
                      ++..+.-....+|||+|||+|.+++.|...-..+..|+++|..+...+.|.++    |+  +...+..+  ...++  ..
T Consensus        64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg--~~g~~~~ap  141 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG--SEGWPEEAP  141 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G--GGTTGGG-S
T ss_pred             HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch--hhccccCCC
Confidence            34434444558999999999999988876311123588999998777776654    32  12222111  12233  78


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ||.|+++.....      +.   .++.+-|||||.+++--.
T Consensus       142 fD~I~v~~a~~~------ip---~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  142 FDRIIVTAAVPE------IP---EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEEESSBBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred             cCEEEEeeccch------HH---HHHHHhcCCCcEEEEEEc
Confidence            999999855432      22   356677999999998544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.36  E-value=1e-06  Score=85.02  Aligned_cols=123  Identities=15%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH----HHHHHHhC-C--CcEEEEEeccCChhhHHHHHHc-
Q 019879          153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG----FAAAIQSS-K--LWVMNVVPTLADKNTLGVIYER-  224 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~----faa~L~~~-~--v~v~nVv~vD~s~~~L~~a~~R-  224 (334)
                      -.|=.|...|....+..   ..   ....-+|..+||.||.    +|..|.+. +  ..-..|+++|+++.+|+.|.+- 
T Consensus        94 T~FFRd~~~f~~L~~~~---~~---~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~  167 (287)
T PRK10611         94 TAFFREAHHFPILAEHA---RR---RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI  167 (287)
T ss_pred             CCccCCcHHHHHHHHHH---Hh---cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence            45666667765544331   11   1223699999999995    55555552 1  1135799999999999876431 


Q ss_pred             -------Ccc----------------c--------------hhhhhcccCCCCC--CccceEEechhhccccCcCCHHHH
Q 019879          225 -------GLI----------------G--------------IYHDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDI  265 (334)
Q Consensus       225 -------gli----------------~--------------~~~d~~e~l~~yp--~sFDlVha~~vfs~~~~~c~~~~~  265 (334)
                             ++.                +              ..|+..+  +++|  +.||+|+|.+||.|+. ......+
T Consensus       168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~-~~~~~~v  244 (287)
T PRK10611        168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFD-KTTQERI  244 (287)
T ss_pred             CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCC-HHHHHHH
Confidence                   110                0              0112111  1343  8999999999999874 3467899


Q ss_pred             HHHHHHhhcCCeEEEEEeC
Q 019879          266 LLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       266 L~Em~RVLRPGG~lii~D~  284 (334)
                      +..+++.|+|||+|++...
T Consensus       245 l~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        245 LRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             HHHHHHHhCCCcEEEEeCc
Confidence            9999999999999988764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.34  E-value=1.5e-06  Score=84.16  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|+.++   ..|+++|.++.+++.+.+.    |+  +..+....+.+.. ..+.||+|+++  
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d--  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN--  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence            34789999999999999999876   3699999999999876543    33  1122211222221 23679999987  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh-HHHHHHHHhcccceEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE-IIKVKKIVGGMRWDTK  303 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~~~~~l~W~~~  303 (334)
                          +.+..+...+.++-.-++|++.++++-.+.. ...++.+   -.|+..
T Consensus       248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~  292 (315)
T PRK03522        248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIE  292 (315)
T ss_pred             ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEE
Confidence                4444444455555566899999999876653 3334444   245554

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.33  E-value=1.8e-06  Score=80.76  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-------cch-hhhhcccCCCCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGI-YHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-------i~~-~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ...+|||+|||||+|+..|+++|+  ..|+++|.+++|+........       ... +.+|.+ +. .+ ..||+++++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~DvsfiS  150 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFIS  150 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEee
Confidence            457899999999999999999874  469999999888875322211       001 112222 21 23 577877766


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE-------------------eC---hhhHHHHHHHHhcccceEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR-------------------DE---VDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~-------------------D~---~~~~~~i~~~~~~l~W~~~  303 (334)
                      .           ..+|..|.+.|+| |.+++-                   |.   ...++++...+..+.|.+.
T Consensus       151 ~-----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~  213 (228)
T TIGR00478       151 L-----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK  213 (228)
T ss_pred             h-----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence            2           2367788888888 766653                   21   1245666666777888765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.28  E-value=2.6e-06  Score=79.03  Aligned_cols=122  Identities=15%  Similarity=0.187  Sum_probs=82.4

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH-cCccch--------------hhhhcccCCCCC-
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE-RGLIGI--------------YHDWCEAFSTYP-  241 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~-Rgli~~--------------~~d~~e~l~~yp-  241 (334)
                      .....+||+-|||.|.-+.+|+++|   .+|+++|+|+..++.+++ +++...              +.-+|.+|-.++ 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            3445799999999999999999998   589999999988888754 343110              011233442222 


Q ss_pred             ---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE--EeC--------h-h-hHHHHHHHHhcccceEEE
Q 019879          242 ---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII--RDE--------V-D-EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       242 ---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii--~D~--------~-~-~~~~i~~~~~~l~W~~~~  304 (334)
                         ++||+|+=...|.-++ ...-++..+-|.++|+|||.+++  .+.        + . ..+.|+.++. -.|++..
T Consensus       112 ~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~  187 (218)
T PF05724_consen  112 EDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE  187 (218)
T ss_dssp             SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred             hhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence               5799998777776654 45668999999999999999333  221        1 1 2356777776 7777653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.27  E-value=2.8e-06  Score=82.97  Aligned_cols=114  Identities=14%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---------c---chhhhhcc-----cCCCCC
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------I---GIYHDWCE-----AFSTYP  241 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---------i---~~~~d~~e-----~l~~yp  241 (334)
                      .++..+||+|||-||=+...-..++  -.++++|++.-.++.|..|--         +   ..+...|-     .+..++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            3567899999999996655555443  468999998777877766521         1   11111121     122345


Q ss_pred             -CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHH
Q 019879          242 -RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKI  294 (334)
Q Consensus       242 -~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~  294 (334)
                       .+||+|-|.+.||+. ........+|+-+.+.|||||+||-+-+..  ++.+++..
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence             559999999888763 333456689999999999999999987654  56666655

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.25  E-value=5.4e-06  Score=83.50  Aligned_cols=118  Identities=12%  Similarity=0.203  Sum_probs=75.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CCC--CC-Cccc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FST--YP-RTYD  245 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~~--yp-~sFD  245 (334)
                      +......+|||+|||+|.++..|++..   ..|+++|.++.+++.+.+.    |+  +..++..++. ++.  +. ++||
T Consensus       288 l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       288 LELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             hccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence            333344689999999999999998764   3689999999999877653    32  1122222222 222  22 6899


Q ss_pred             eEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879          246 LIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       246 lVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      +|+.+      +.+.. ...++.++.+ |+|+|.++++-.+..+.+--+.+....|++.
T Consensus       365 ~vi~d------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~  416 (431)
T TIGR00479       365 VLLLD------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT  416 (431)
T ss_pred             EEEEC------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence            99876      22333 3566666655 8999999998766655443333444456554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PHA03412 putative methyltransferase; Provisional

Probab=98.25  E-value=3.2e-06  Score=79.65  Aligned_cols=97  Identities=15%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             CceEeeecccccHHHHHHHhCC--CcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCC--CCCccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST--YPRTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~--v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~--yp~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|.++..++.+-  ....+|+++|+++.++..+.+.-. +...   ..++..  ++.+||+|++|==|.-
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~---~~D~~~~~~~~~FDlIIsNPPY~~  126 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWI---NADALTTEFDTLFDMAISNPPFGK  126 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEE---EcchhcccccCCccEEEECCCCCC
Confidence            3699999999999999887631  012479999999999998875421 1111   123222  3479999999832221


Q ss_pred             c--cC------cCC-HHHHHHHHHHhhcCCeEEEE
Q 019879          256 Y--KD------KCN-IEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       256 ~--~~------~c~-~~~~L~Em~RVLRPGG~lii  281 (334)
                      .  .+      ... ...++....|.|+||++ |+
T Consensus       127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            1  01      112 34688888898888886 44

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.24  E-value=1.7e-05  Score=73.13  Aligned_cols=135  Identities=19%  Similarity=0.303  Sum_probs=90.0

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCcc----chhhhhccc-------CCCCCCccceE
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGLI----GIYHDWCEA-------FSTYPRTYDLI  247 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgli----~~~~d~~e~-------l~~yp~sFDlV  247 (334)
                      +||.||||||.-+.+++..=-. +.-.|.|.....+.-+    .+.|+.    ....|.++.       .+.++++||+|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            6999999999988888874211 3578999886665432    233442    122232222       11234799999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC---------------------------hhhHHHHHHHHhcccc
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE---------------------------VDEIIKVKKIVGGMRW  300 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~---------------------------~~~~~~i~~~~~~l~W  300 (334)
                      +|.+++|-. .+...+.+|.+..|+|+|||.|++.-+                           .+.++.+..++.....
T Consensus       107 ~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL  185 (204)
T PF06080_consen  107 FCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL  185 (204)
T ss_pred             eehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence            999999654 466778999999999999999999621                           1245667777777666


Q ss_pred             eEEEecCCCCCCCCceEEEEEe
Q 019879          301 DTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       301 ~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      ....  ..+-| ..+++||.+|
T Consensus       186 ~l~~--~~~MP-ANN~~Lvfrk  204 (204)
T PF06080_consen  186 ELEE--DIDMP-ANNLLLVFRK  204 (204)
T ss_pred             ccCc--ccccC-CCCeEEEEeC
Confidence            5431  11122 3578899887

The function of this family is unknown.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.22  E-value=7.2e-06  Score=82.43  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhh-hhcccCCCC---CCccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYH-DWCEAFSTY---PRTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~-d~~e~l~~y---p~sFDlVh  248 (334)
                      ..+|||+|||+|+|+.+.+..+.  ..|+++|.++.+++.+.+.    |+.    ...+ |..+.+..+   .++||+|+
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            47899999999999877665553  3699999999999876543    331    1111 111111112   25899999


Q ss_pred             echh-hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGL-FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~v-fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++-= |..-.     .......++.-..++|+|||.|+....
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9821 11000     001244566677899999999998654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.18  E-value=1.1e-06  Score=82.61  Aligned_cols=98  Identities=12%  Similarity=0.234  Sum_probs=76.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc---CccchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R---gli~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      ....++|+|||.|..+.+|+..++  ..++-+|.|.+|++.+.+-   +++..+..--|.+.+|. ++||+|+++..+|.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            356899999999999999999874  5789999999999877654   33322222225555676 99999999977764


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .   .++...|..++-+|||.|.||-+
T Consensus       150 ~---NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  150 T---NDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             h---ccCchHHHHHHHhcCCCccchhH
Confidence            3   25778999999999999999876

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.18  E-value=6.6e-06  Score=76.96  Aligned_cols=110  Identities=16%  Similarity=0.218  Sum_probs=73.8

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH----HHHHcCc--cchhhhhccc-CCC-CC-CccceEEechh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGL--IGIYHDWCEA-FST-YP-RTYDLIHAHGL  252 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~----~a~~Rgl--i~~~~d~~e~-l~~-yp-~sFDlVha~~v  252 (334)
                      ..+|+||||.|.|...++++... .|++|+++....+.    .+.+.|+  +..+...+.. +.. ++ +|.|-|+-+  
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--
Confidence            47999999999999999986543 48999998766554    4455565  2222222222 222 34 599999876  


Q ss_pred             hc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHH-HHHH
Q 019879          253 FS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIK-VKKI  294 (334)
Q Consensus       253 fs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~-i~~~  294 (334)
                      |.       |.+.+---..+|.++.|+|+|||.|.+.+..+ +.+. +...
T Consensus       127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~  177 (227)
T COG0220         127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV  177 (227)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence            54       22222223589999999999999999976654 4444 4444

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.14  E-value=6.7e-06  Score=83.91  Aligned_cols=149  Identities=17%  Similarity=0.275  Sum_probs=75.7

Q ss_pred             CCCcccccCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHH-HHhhcCCC----CCceEeeecccccHHHHHHHhCC-
Q 019879          129 KAFPERLYAIPPRISSGSIPGVSAESYQEDSNKWKKHVNAYKK-INRLLDSG----RYRNIMDMNAGFGGFAAAIQSSK-  202 (334)
Q Consensus       129 ~~wP~Rl~~~p~~l~~~~~~g~~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~----~~r~VLD~GCG~G~faa~L~~~~-  202 (334)
                      .++..+|..+..=|+. .+...+.|.|+.|.-.-...-.+-.. +...+...    +...|||+|||+|.+..+.++.+ 
T Consensus       131 ~~~~d~Lq~PLqPl~d-nL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~  209 (448)
T PF05185_consen  131 SGYEDYLQAPLQPLMD-NLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGA  209 (448)
T ss_dssp             ------EE----TTTS----HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTH
T ss_pred             hhchhhccCCCCCchh-hhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHH
Confidence            3555566654333332 13334678999997753222222111 22223332    24679999999999875554432 


Q ss_pred             --CcEEEEEeccCChhhHHHH----HHcCc---cchhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhh
Q 019879          203 --LWVMNVVPTLADKNTLGVI----YERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL  273 (334)
Q Consensus       203 --v~v~nVv~vD~s~~~L~~a----~~Rgl---i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVL  273 (334)
                        .....|.+++.++++....    .+.|+   +.+++...+.+ ..|...|+|++-. |..+.+.+-+...|.-.+|.|
T Consensus       210 ~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~lpekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfL  287 (448)
T PF05185_consen  210 RAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-ELPEKVDIIVSEL-LGSFGDNELSPECLDAADRFL  287 (448)
T ss_dssp             HHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-CHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGE
T ss_pred             HhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-CCCCceeEEEEec-cCCccccccCHHHHHHHHhhc
Confidence              1235789999886654332    33343   33444433433 2357999999873 333333445667899999999


Q ss_pred             cCCeEEE
Q 019879          274 RPEGAII  280 (334)
Q Consensus       274 RPGG~li  280 (334)
                      ||||.+|
T Consensus       288 kp~Gi~I  294 (448)
T PF05185_consen  288 KPDGIMI  294 (448)
T ss_dssp             EEEEEEE
T ss_pred             CCCCEEe
Confidence            9999865

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK04148 hypothetical protein; Provisional

Probab=98.13  E-value=1.2e-05  Score=69.54  Aligned_cols=94  Identities=17%  Similarity=0.329  Sum_probs=67.2

Q ss_pred             CCCCCceEeeecccccH-HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC--CccceEEechhh
Q 019879          177 DSGRYRNIMDMNAGFGG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP--RTYDLIHAHGLF  253 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~-faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp--~sFDlVha~~vf  253 (334)
                      ...+..+|||+|||+|. +|..|.+.|   .+|+++|.++..++.+.+++......|+.+  +.+.  ..+|+|.+.   
T Consensus        13 ~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysi---   84 (134)
T PRK04148         13 EKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSI---   84 (134)
T ss_pred             ccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEe---
Confidence            33345789999999996 899999887   479999999999998988886544444333  2333  789999885   


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                         ....++...+.++.+-+  |.-++|..
T Consensus        85 ---rpp~el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         85 ---RPPRDLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             ---CCCHHHHHHHHHHHHHc--CCCEEEEc
Confidence               22345667777777644  44566654

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.12  E-value=1.1e-05  Score=75.97  Aligned_cols=139  Identities=24%  Similarity=0.282  Sum_probs=91.4

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----HcCc----cchhh-hhcccCCCCC-Ccc
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL----IGIYH-DWCEAFSTYP-RTY  244 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~Rgl----i~~~~-d~~e~l~~yp-~sF  244 (334)
                      .++..+..+|||...|.|.+|..-+++|+  ..|.-++-+++.|+.|.    .|+|    +.+.+ |..+....|+ .||
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence            34455678999999999999999999986  24666666677777653    2344    22233 3233445688 889


Q ss_pred             ceEEec-hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--------hhhHHHHHHHHhcccceEEEecCCCCCCCCc
Q 019879          245 DLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--------VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE  315 (334)
Q Consensus       245 DlVha~-~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--------~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e  315 (334)
                      |+|+-. -=||+.- .---+.+-+|++|||||||.++=...        .+...++.+.+.+..+.+.....+       
T Consensus       207 DaIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~-------  278 (287)
T COG2521         207 DAIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE-------  278 (287)
T ss_pred             ceEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh-------
Confidence            988543 2233321 01135889999999999999887542        245677888888888886544333       


Q ss_pred             eE-EEEEec
Q 019879          316 KI-LVAVKQ  323 (334)
Q Consensus       316 ~~-l~~~K~  323 (334)
                      .+ ++|+|+
T Consensus       279 ~~gv~A~k~  287 (287)
T COG2521         279 ALGVVAVKP  287 (287)
T ss_pred             ccceEEecC
Confidence            33 666663

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.12  E-value=5.4e-06  Score=82.51  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=77.4

Q ss_pred             chhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---c
Q 019879          156 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---G  228 (334)
Q Consensus       156 ~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~  228 (334)
                      .+....| .+..++..+...+..+  ..++|+|||.|+...++..-.  ..++++++.++..+..+...    ++-   .
T Consensus        89 ~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~  163 (364)
T KOG1269|consen   89 NSNEMFW-IRHEGIVALRESCFPG--SKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCN  163 (364)
T ss_pred             hHHHHHH-HhhcchHHHhhcCccc--ccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence            3333444 3333444343334443  489999999999888877643  24678888876554433221    110   0


Q ss_pred             hhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          229 IYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       229 ~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ....|+-. .+|+ ++||.+-+..+..|.+   +...++.|++|||+|||+++..+
T Consensus       164 ~~~~~~~~-~~fedn~fd~v~~ld~~~~~~---~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  164 FVVADFGK-MPFEDNTFDGVRFLEVVCHAP---DLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             eehhhhhc-CCCCccccCcEEEEeecccCC---cHHHHHHHHhcccCCCceEEeHH
Confidence            12223333 3566 9999999988888865   47899999999999999999864

>PLN02672 methionine S-methyltransferase

Probab=98.11  E-value=1.4e-05  Score=88.98  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc------------------cchh-hhhcccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL------------------IGIY-HDWCEAF  237 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl------------------i~~~-~d~~e~l  237 (334)
                      ..+|||+|||+|.++..|+.+.. ...|+++|+|+++++.|.+.    ++                  +..+ .|+.+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            35899999999999999987531 13699999999999877432    11                  1111 1332222


Q ss_pred             CCCCCccceEEec--hhhc------------ccc--------CcCC-------------HHHHHHHHHHhhcCCeEEEEE
Q 019879          238 STYPRTYDLIHAH--GLFS------------LYK--------DKCN-------------IEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       238 ~~yp~sFDlVha~--~vfs------------~~~--------~~c~-------------~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ......||+|++|  ++-.            |-+        ..+.             +..++.+..++|||||++++-
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            1011269999997  1110            100        0111             257899999999999999998


Q ss_pred             eChhhHHHHH-HHHhcccceE
Q 019879          283 DEVDEIIKVK-KIVGGMRWDT  302 (334)
Q Consensus       283 D~~~~~~~i~-~~~~~l~W~~  302 (334)
                      -..+.-+.+. +++....|..
T Consensus       278 iG~~q~~~v~~~l~~~~gf~~  298 (1082)
T PLN02672        278 MGGRPGQAVCERLFERRGFRI  298 (1082)
T ss_pred             ECccHHHHHHHHHHHHCCCCe
Confidence            7766556666 4665544543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.10  E-value=1.1e-05  Score=80.37  Aligned_cols=110  Identities=11%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp~sFDlVha~~vf  253 (334)
                      ..+|||++||+|.|+..++.++   ..|+++|.++.+++.+.+.    |+  +..+....+.+.. ....||+|+.+   
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence            4689999999999999999765   3699999999999877653    22  1111111112211 22569999887   


Q ss_pred             ccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhHH-HHHHHHhcccceEE
Q 019879          254 SLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEII-KVKKIVGGMRWDTK  303 (334)
Q Consensus       254 s~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~~-~i~~~~~~l~W~~~  303 (334)
                         +.+..+ ..++..+ .-++|++.++++-.+..+. -++.+   ..|+++
T Consensus       308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~  352 (374)
T TIGR02085       308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE  352 (374)
T ss_pred             ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence               444433 3444444 4589999999998776443 35554   346655

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.09  E-value=2.7e-06  Score=81.66  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ...++|+|||.|-+   +...+.  .-+++.|.+...+..+.+.|-....-..+-.+ |++ .+||.+.+..|+||+..+
T Consensus        46 gsv~~d~gCGngky---~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~-p~~~~s~d~~lsiavihhlsT~  119 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKY---LGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADALKL-PFREESFDAALSIAVIHHLSTR  119 (293)
T ss_pred             cceeeecccCCccc---CcCCCc--ceeeecchhhhhccccccCCCceeehhhhhcC-CCCCCccccchhhhhhhhhhhH
Confidence            47899999999963   222221  24788998876666666655421221112233 565 999999999999999887


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEE
Q 019879          260 CNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.-..+++|+-|+|||||...+.
T Consensus       120 ~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  120 ERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEE
Confidence            77889999999999999986554

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.08  E-value=8e-05  Score=67.57  Aligned_cols=134  Identities=19%  Similarity=0.349  Sum_probs=81.8

Q ss_pred             hhhhhHHHHHHHHHHHhhcCCCCCceEeeeccccc--HHHHHHHhCCCcEEEEEeccCChhhHH----HHHHcCcc--ch
Q 019879          158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFG--GFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLI--GI  229 (334)
Q Consensus       158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G--~faa~L~~~~v~v~nVv~vD~s~~~L~----~a~~Rgli--~~  229 (334)
                      ..+.|.+++.+-..++..+..... +++|+|+|.|  |+..+++...   .+++-+|....-..    ++.+-||.  .+
T Consensus        27 ~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v  102 (184)
T PF02527_consen   27 PEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNVEV  102 (184)
T ss_dssp             HHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence            356666666443333333443322 7999999999  4445555444   35888888755433    33344653  34


Q ss_pred             hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh---HHHHHHHHhcccceEE
Q 019879          230 YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE---IIKVKKIVGGMRWDTK  303 (334)
Q Consensus       230 ~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~~~~~l~W~~~  303 (334)
                      ++.-+|. ..++.+||+|+|..|       ..+..++.-+.+.|+|||.+++.-....   ++..+...+.+.++..
T Consensus       103 ~~~R~E~-~~~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~  171 (184)
T PF02527_consen  103 INGRAEE-PEYRESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL  171 (184)
T ss_dssp             EES-HHH-TTTTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred             EEeeecc-cccCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence            5555566 446699999999744       3467888889999999999999876543   3444555666666654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.08  E-value=1.2e-05  Score=83.04  Aligned_cols=112  Identities=11%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCccch--hhhhccc-CCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLIGI--YHDWCEA-FSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli~~--~~d~~e~-l~~yp-~sFDlVha~~  251 (334)
                      ....+||+|||.|.|+..++...-. .|++|+|....-+..    +.++|+...  +....+. ...|+ +++|-|+.+ 
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~-  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL-  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE-
Confidence            4578999999999999999986433 589999998765443    344454211  1111111 12366 999999887 


Q ss_pred             hhc-------cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHH
Q 019879          252 LFS-------LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKI  294 (334)
Q Consensus       252 vfs-------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~  294 (334)
                       |.       |.+.+---..+|.++.|+|||||.+.+.+.. ++...+...
T Consensus       425 -FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~  474 (506)
T PRK01544        425 -FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIEL  474 (506)
T ss_pred             -CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence             43       2222222358999999999999998887554 455543333

>PLN02476 O-methyltransferase

Probab=98.07  E-value=3.6e-05  Score=74.13  Aligned_cols=134  Identities=18%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCcc---chhhhhc-ccCCCC-----CC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHDWC-EAFSTY-----PR  242 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d~~-e~l~~y-----p~  242 (334)
                      ...+.++||++|+|+|..+.+|+.. +-. ..|+.+|.+++++++|.+    -|+.   ....+.+ +.++.+     ++
T Consensus       115 ~~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~  193 (278)
T PLN02476        115 QILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS  193 (278)
T ss_pred             HhcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence            3345689999999999999888762 111 248999999888876643    2442   1111111 112212     36


Q ss_pred             ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------h-hHHHHHHH----HhcccceEEEec
Q 019879          243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------D-EIIKVKKI----VGGMRWDTKMVD  306 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~-~~~~i~~~----~~~l~W~~~~~~  306 (334)
                      +||+|+...      +..+...++..+.+.|||||.+++.+..           + ....|+++    ...=++.+.+.-
T Consensus       194 ~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP  267 (278)
T PLN02476        194 SYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP  267 (278)
T ss_pred             CCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence            899998762      2334678899999999999999886421           1 11234443    555567776653


Q ss_pred             CCCCCCCCceEEEEEec
Q 019879          307 HEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       307 ~~~~~~~~e~~l~~~K~  323 (334)
                      .      .+++++++|.
T Consensus       268 i------gDGl~i~~K~  278 (278)
T PLN02476        268 I------GDGMTICRKR  278 (278)
T ss_pred             e------CCeeEEEEEC
Confidence            2      3568888874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.05  E-value=3.4e-05  Score=73.92  Aligned_cols=105  Identities=20%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             CCceEeeecccccH----HHHHHHhCCC----cEEEEEeccCChhhHHHHHH---------cCccch-------------
Q 019879          180 RYRNIMDMNAGFGG----FAAAIQSSKL----WVMNVVPTLADKNTLGVIYE---------RGLIGI-------------  229 (334)
Q Consensus       180 ~~r~VLD~GCG~G~----faa~L~~~~v----~v~nVv~vD~s~~~L~~a~~---------Rgli~~-------------  229 (334)
                      +.-+|.-+||+||.    +|..|.+...    +.+.|.++|++...|+.|..         +++...             
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            46799999999995    5666665432    45789999999988886532         222110             


Q ss_pred             --------------hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          230 --------------YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       230 --------------~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                                    .|+..++ +++++-||+|+|.+|+-++. ...-.+++..++..|+|||+|++-....
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~-~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~sE~  244 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDD-SPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHSET  244 (268)
T ss_pred             EEEChHHhcccEEeecCCCCC-ccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence                          1111111 12668899999999998764 4456799999999999999999976543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.01  E-value=3.6e-05  Score=70.52  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..++.++.  ..|+++|.++.+++.+.+.    |+  +..+. |..+.++....+||+|+++-=|
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            36899999999999986555543  4799999998888766542    22  11111 2222221123579999998222


Q ss_pred             ccccCcCC-HHHHHHHHHH--hhcCCeEEEEEeChh
Q 019879          254 SLYKDKCN-IEDILLEMDR--ILRPEGAIIIRDEVD  286 (334)
Q Consensus       254 s~~~~~c~-~~~~L~Em~R--VLRPGG~lii~D~~~  286 (334)
                           +.. .+.++.-+..  +|+|+|++++.....
T Consensus       132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        132 -----RKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             -----CCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence                 222 2344444433  479999999986553

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.98  E-value=3.5e-05  Score=71.78  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cccc---hhh--hhcccCC-CCCCccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIG---IYH--DWCEAFS-TYPRTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~--d~~e~l~-~yp~sFD  245 (334)
                      .....++||.+|.+.|.-+..|+.. +. -..++.+|.++++.+.|++-    |+..   ...  +..+.+. ....+||
T Consensus        56 ~~~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          56 RLSGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             HhcCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence            3345789999999999888777763 11 12589999999998877653    3311   122  3333343 2459999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--------h------hhHHHHHHHHhcccceEEEecCCCCC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--------V------DEIIKVKKIVGGMRWDTKMVDHEDGP  311 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--------~------~~~~~i~~~~~~l~W~~~~~~~~~~~  311 (334)
                      +|+...      +..+-..+|.+.-+.|||||.+++.+-        .      ....+++.+...+.++..... .--|
T Consensus       135 liFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~lP  207 (219)
T COG4122         135 LVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDT-VLLP  207 (219)
T ss_pred             EEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCcee-EEEe
Confidence            998762      234457899999999999999998641        1      234456666555555432110 0011


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                       ..+.++++.|.
T Consensus       208 -~gDGl~v~~k~  218 (219)
T COG4122         208 -LGDGLLLSRKR  218 (219)
T ss_pred             -cCCceEEEeec
Confidence             23678888885

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.95  E-value=9.3e-05  Score=71.64  Aligned_cols=129  Identities=19%  Similarity=0.288  Sum_probs=91.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHH----HHHHcCccch---hhhhccc---CCCCCCccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLG----VIYERGLIGI---YHDWCEA---FSTYPRTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~----~a~~Rgli~~---~~d~~e~---l~~yp~sFD  245 (334)
                      ..+..-+||||.||.|.+....++ .+.....|.-.|.|+..++    .+.+|||..+   ....|=+   +....-..+
T Consensus       132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence            346678999999999997655544 3332457899999988776    6788898543   2211111   111224568


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHhc----ccceEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVGG----MRWDTKMV  305 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~~----l~W~~~~~  305 (334)
                      +++.+.+|..+.+..-+...|.-+.++|.|||++|.+-.+  -.++-|...+.+    .-|.++..
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR  277 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR  277 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence            9999999999886555678899999999999999999743  356667777766    36877654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3.6e-05  Score=71.21  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=65.4

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC--Ccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP--RTY  244 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp--~sF  244 (334)
                      +..|......+||++|||+|..+|-|++-.   ..|+.++..+...+.|+++    |+  +.+.+.  +..--|+  .-|
T Consensus        65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g--DG~~G~~~~aPy  139 (209)
T COG2518          65 LQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG--DGSKGWPEEAPY  139 (209)
T ss_pred             HHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC--CcccCCCCCCCc
Confidence            334555566899999999999998888853   3688888886655666543    33  222221  1122344  789


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |.|+.+.....++      .   -+.+-|||||.+++=-.
T Consensus       140 D~I~Vtaaa~~vP------~---~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVP------E---ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCC------H---HHHHhcccCCEEEEEEc
Confidence            9999886665443      2   23457999999998655

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.93  E-value=8.8e-05  Score=68.29  Aligned_cols=133  Identities=18%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCcc---chhhh-hcccCCC----C-CCccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHD-WCEAFST----Y-PRTYD  245 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d-~~e~l~~----y-p~sFD  245 (334)
                      .+.++||.+||++|.-+.+|++.-.....|+.+|.++.+.++|.+    -|+.   ..... -.+-++.    . +++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            356899999999999888888631111368999999888877643    2442   11111 1111111    2 26899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------h--hHH-HHHHHHhcccceEEEecCCC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------D--EII-KVKKIVGGMRWDTKMVDHED  309 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------~--~~~-~i~~~~~~l~W~~~~~~~~~  309 (334)
                      +|+...      +..+....+..+.+.|||||.+++.+..             .  .+. -.+.+.+-=+.++.+...  
T Consensus       124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi--  195 (205)
T PF01596_consen  124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI--  195 (205)
T ss_dssp             EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred             EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence            998873      2335667888899999999999998631             1  111 223335555666665432  


Q ss_pred             CCCCCceEEEEEec
Q 019879          310 GPLVPEKILVAVKQ  323 (334)
Q Consensus       310 ~~~~~e~~l~~~K~  323 (334)
                          .+.+++++|.
T Consensus       196 ----gdGl~l~~K~  205 (205)
T PF01596_consen  196 ----GDGLTLARKR  205 (205)
T ss_dssp             ----TTEEEEEEE-
T ss_pred             ----CCeeEEEEEC
Confidence                4678999884

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.91  E-value=2.4e-05  Score=76.96  Aligned_cols=97  Identities=18%  Similarity=0.259  Sum_probs=66.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCc---cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      .+.|||+|||||-+...-++.|+  ..|.++|.| ++.+.    +.+.++   +...+.-.|++ -.| ...|+|++-.+
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM  136 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence            48999999999999888888774  578999988 56554    344454   33444445554 456 99999998743


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      =+.+....-+..+|.-=+|-|+|||.++=
T Consensus       137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  137 GYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            22211112245777788999999998764

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=0.00012  Score=70.36  Aligned_cols=159  Identities=16%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             hhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cch
Q 019879          157 EDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGI  229 (334)
Q Consensus       157 ~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~  229 (334)
                      -+++.|...|-.-..-.   .......+||+|||+|..+..|+..=. -..|+++|.|+.++..|.+.    ++   +.+
T Consensus       128 pETEE~V~~Vid~~~~~---~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v  203 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNS---EHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV  203 (328)
T ss_pred             ccHHHHHHHHHHHHhhh---hhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence            35788877775432222   222234899999999999988876311 24589999999988877654    22   333


Q ss_pred             hhhhc--ccCCCCC---CccceEEec--hhhcc-----------ccCc--------C--CHHHHHHHHHHhhcCCeEEEE
Q 019879          230 YHDWC--EAFSTYP---RTYDLIHAH--GLFSL-----------YKDK--------C--NIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       230 ~~d~~--e~l~~yp---~sFDlVha~--~vfs~-----------~~~~--------c--~~~~~L~Em~RVLRPGG~lii  281 (334)
                      .|...  +.+.+++   +.+|+++||  ++++-           +.+.        +  .+..++.=.-|.|+|||.+.+
T Consensus       204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            33211  1233443   899999998  33331           0000        0  122566667899999999999


Q ss_pred             EeC-----hhhHHH-HHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          282 RDE-----VDEIIK-VKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       282 ~D~-----~~~~~~-i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      .-.     ...+.. +...++.--|.+.++.--   .+.+++++..+
T Consensus       284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r  327 (328)
T KOG2904|consen  284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR  327 (328)
T ss_pred             EecccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence            754     223333 223344444555443211   24677776654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.0002  Score=68.03  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=76.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h---hhhhcccCCCCCCccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I---YHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~---~~d~~e~l~~yp~sFDlVha~  250 (334)
                      ....+|||+|.|+|.++++|+..-.-...|+..+..++.++.|.+.    |+.. +   ..|.++.  .++..||.|+..
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~--~~~~~vDav~LD  170 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG--IDEEDVDAVFLD  170 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc--ccccccCEEEEc
Confidence            3458999999999999999986311224789999998888887653    3322 1   1233333  234799999765


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccc
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRW  300 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W  300 (334)
                              --++-.++.-++.+|+|||.+++.-+. +.++++-..++..+|
T Consensus       171 --------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~  213 (256)
T COG2519         171 --------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF  213 (256)
T ss_pred             --------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence                    235779999999999999999887653 344443333333344

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.80  E-value=3.8e-05  Score=73.05  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=48.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---ccchhhhhcccCCCCCC-ccceEEec
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFSTYPR-TYDLIHAH  250 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---li~~~~d~~e~l~~yp~-sFDlVha~  250 (334)
                      ......+|||+|||+|.++..|++++.   .|+++|.+++|++.+.++.   -+..++.....+ +++. .+|.|+++
T Consensus        39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~~~~~~~~~vv~N  112 (272)
T PRK00274         39 GPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-DLSELQPLKVVAN  112 (272)
T ss_pred             CCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-CHHHcCcceEEEe
Confidence            333457899999999999999999863   6899999999999887652   122222222222 2332 26888888

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.79  E-value=8.4e-05  Score=70.36  Aligned_cols=103  Identities=11%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc-----cc-hh----h---------------hh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL-----IG-IY----H---------------DW  233 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~-~~----~---------------d~  233 (334)
                      ....+||+||..|.+.+.+++. +.  .-|.|+|+.+..++.|...--     .. +.    +               +.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            4578999999999999999875 32  348999999877776654310     00 00    0               00


Q ss_pred             c--------------------ccCCCCC-CccceEEechhhc--cccCc-CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          234 C--------------------EAFSTYP-RTYDLIHAHGLFS--LYKDK-CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       234 ~--------------------e~l~~yp-~sFDlVha~~vfs--~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +                    .+|.-+. +.||+|.|-++=-  |+... ..+..+|..+.|.|.|||+|++--.
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence            0                    0011133 6899999864322  55422 2488999999999999999999754

>PLN02823 spermine synthase

Probab=97.76  E-value=0.00036  Score=68.92  Aligned_cols=103  Identities=16%  Similarity=0.149  Sum_probs=65.9

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc---------chhhhhcccCC-CCCCccce
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------GIYHDWCEAFS-TYPRTYDL  246 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li---------~~~~d~~e~l~-~yp~sFDl  246 (334)
                      ..+.++||-+|+|.|+.+..+++.. .+..|+.+|+++.+++++++.- +.         ..+.+.+-.+. .-+++||+
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            3457899999999999999888753 2357899999999999887642 11         01111111111 12378999


Q ss_pred             EEechhhcccc-CcC-C--HHHHHH-HHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLYK-DKC-N--IEDILL-EMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~~-~~c-~--~~~~L~-Em~RVLRPGG~lii~  282 (334)
                      |++.. +.... ..+ .  -..++. .+.|.|+|||.+++.
T Consensus       180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            99872 21100 001 0  135666 899999999999875

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.73  E-value=0.00037  Score=66.63  Aligned_cols=122  Identities=11%  Similarity=0.099  Sum_probs=78.8

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc--Cccchhh-hhccc----CCCCCCccceEE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--GLIGIYH-DWCEA----FSTYPRTYDLIH  248 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R--gli~~~~-d~~e~----l~~yp~sFDlVh  248 (334)
                      ..-.+++|||+|||+|.-+-+..+. + ....++.+|.|+.|++++..-  ....... .+-..    +.++ ...|||+
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi  107 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVI  107 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEE
Confidence            3456789999999999865555542 2 346789999999998865431  1111111 01111    1122 3349999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~  303 (334)
                      ++++|..+.+ .....++..+.+.+.+  .|+|-++-     +.+.++++.+....+.+.
T Consensus       108 ~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen  108 ASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             EehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            9999998876 5667888888787766  88887753     356666666655555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.71  E-value=7.3e-05  Score=70.52  Aligned_cols=70  Identities=7%  Similarity=0.062  Sum_probs=48.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++++   ..|+++|+++.+++.+.++-- ...+.-.+.++..++ ..||.|+++.-
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlP  100 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLP  100 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCC
Confidence            45799999999999999999875   368999999999998776521 111111122333334 46899999843

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.65  E-value=0.0001  Score=65.60  Aligned_cols=103  Identities=20%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----C--c----cchhhhhcccC--CCCC-Cccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----G--L----IGIYHDWCEAF--STYP-RTYD  245 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----g--l----i~~~~d~~e~l--~~yp-~sFD  245 (334)
                      .+..+||++|||+|-.+..++... ....|+..|.++ .++.+...    +  .    .....+|.+..  ...+ +.||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            456899999999997666666551 234688999885 66643321    1  0    11234676643  1123 7899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +|+++.++..   ....+.++.=+.++|+|+|.+++....+
T Consensus       122 ~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  122 VILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9999998864   3457889999999999999988876543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.61  E-value=0.00039  Score=66.45  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=69.6

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch---hhhhc----ccCCC-CCCccce
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI---YHDWC----EAFST-YPRTYDL  246 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~---~~d~~----e~l~~-yp~sFDl  246 (334)
                      .+...++++||=+|.|-|+.++.+++.+-   .|+-+|+.+.+++.+++- +...   +.|-.    ..+.. ..++||+
T Consensus        67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~~~~~~~~fDV  142 (262)
T PRK00536         67 GCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDLDIKKYDL  142 (262)
T ss_pred             HhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehhhhccCCcCCE
Confidence            34556789999999999999999999862   788889988888877662 1110   00000    00111 1378999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+....+.        +.+.+.+.|.|+|||.++..-.
T Consensus       143 IIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        143 IICLQEPD--------IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence            99885432        4677899999999999999653

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.60  E-value=0.00029  Score=66.08  Aligned_cols=46  Identities=9%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +...+..+|||+|||+|.++..|++++.   .|+++|.++++++.+.++
T Consensus        25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~   70 (253)
T TIGR00755        25 ANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL   70 (253)
T ss_pred             cCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence            3444567999999999999999998763   489999999999887654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00058  Score=62.48  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=61.8

Q ss_pred             ccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--ccch
Q 019879          152 AESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGI  229 (334)
Q Consensus       152 ~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--li~~  229 (334)
                      -|.|..+...=...+.. ..+   -..-..+.|+|+|||||.|+...+-.|.  -.|+++|+.+++++++.+.-  +.+.
T Consensus        21 LEQY~Tp~~~Aa~il~~-a~~---~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~   94 (198)
T COG2263          21 LEQYRTPAPLAAYILWV-AYL---RGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGD   94 (198)
T ss_pred             ceecCCChHHHHHHHHH-HHH---cCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCc
Confidence            45666666542222221 111   1233457899999999998777666664  35899999999999876532  2222


Q ss_pred             hhhhcccCCCCCCccceEEechhhcc
Q 019879          230 YHDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       230 ~~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      +.-.+.+...+..-||.|+.|-=|..
T Consensus        95 v~f~~~dv~~~~~~~dtvimNPPFG~  120 (198)
T COG2263          95 VEFVVADVSDFRGKFDTVIMNPPFGS  120 (198)
T ss_pred             eEEEEcchhhcCCccceEEECCCCcc
Confidence            22233455567789999998855553

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.0012  Score=62.37  Aligned_cols=135  Identities=15%  Similarity=0.226  Sum_probs=88.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhh-hhcccCCC--CCCccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYH-DWCEAFST--YPRTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~-d~~e~l~~--yp~sFDlVha~~vfs~  255 (334)
                      +.+.+||+|+-||||..-|+++|+  -.|+++|...+.|.--.+... +..+. .-...+-+  +....|+++|.-.|- 
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI-  155 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI-  155 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence            458999999999999999999986  469999998776653322221 00000 00011111  224678999985553 


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEE-------------------eC---hhhHHHHHHHHhcccceEE--EecCCCCC
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIR-------------------DE---VDEIIKVKKIVGGMRWDTK--MVDHEDGP  311 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~-------------------D~---~~~~~~i~~~~~~l~W~~~--~~~~~~~~  311 (334)
                           .+..+|-.+..+|.|+|.++..                   |+   ..++++|.+.+....|.+.  ......|+
T Consensus       156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~  230 (245)
T COG1189         156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG  230 (245)
T ss_pred             -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence                 3568999999999999988774                   22   2467889999999999986  22334454


Q ss_pred             CCCceEEEEEe
Q 019879          312 LVPEKILVAVK  322 (334)
Q Consensus       312 ~~~e~~l~~~K  322 (334)
                      .+...+|++-+
T Consensus       231 ~GNiE~l~~~~  241 (245)
T COG1189         231 KGNIEFLLLLK  241 (245)
T ss_pred             CCcEeeeeeee
Confidence            44445555433

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.42  E-value=0.00023  Score=68.92  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++.+.   .|+++|+++++++.+.++    ++...+.-.+.++..++ ..||+|+++
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaN  108 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVAN  108 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEec
Confidence            447899999999999999998753   589999999999877654    21111111122333344 678999987

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.40  E-value=0.00079  Score=66.15  Aligned_cols=125  Identities=17%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-----Cccc---hhh-hhccc-CCC--CC-Ccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-----GLIG---IYH-DWCEA-FST--YP-RTY  244 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-----gli~---~~~-d~~e~-l~~--yp-~sF  244 (334)
                      .+...+|||+|||+|..+..|..+.. ...++++|+++.+++.|.+.     ++..   ..+ ..... +..  .+ ..|
T Consensus       112 ~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        112 RGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence            34557899999999998888766421 13699999999988866542     2211   111 00011 111  23 689


Q ss_pred             ceEEechhhccccCc--CCHHHHHHHH----------------HHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEe
Q 019879          245 DLIHAHGLFSLYKDK--CNIEDILLEM----------------DRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       245 DlVha~~vfs~~~~~--c~~~~~L~Em----------------~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~  305 (334)
                      |+|+|+==|+--...  ..-.+-.+.+                .+.+-+||.+-|...  ++++-..+.....|-+.+.
T Consensus       191 DlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~--mi~eS~~~~~~~gwftsmv  267 (321)
T PRK11727        191 DATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR--MIEESKAFAKQVLWFTSLV  267 (321)
T ss_pred             EEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--hhHHHHHHHhhCcEEEEEe
Confidence            999999333211000  0001111111                233457777655544  3344456677777776654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.37  E-value=0.0033  Score=58.54  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=88.8

Q ss_pred             hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhh---HH-HHHHcCcc--ch
Q 019879          158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNT---LG-VIYERGLI--GI  229 (334)
Q Consensus       158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~---L~-~a~~Rgli--~~  229 (334)
                      ..+.|.+++-+-..+...+... ..+++|+|.|.|-  .-.++.....   +|+-+|....-   |. ++.+-||.  .+
T Consensus        46 ~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i  121 (215)
T COG0357          46 PEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEI  121 (215)
T ss_pred             HHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCCeEE
Confidence            3566766664422222222221 4799999999994  3334444443   47888875432   33 23344653  45


Q ss_pred             hhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE---eChhhHHHHHHHHhcccceEEEec
Q 019879          230 YHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR---DEVDEIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       230 ~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~---D~~~~~~~i~~~~~~l~W~~~~~~  306 (334)
                      ++.-+|.+..-+.-||+|.|..+-       ++..++.=+...||+||.+++-   -..+.+.+++.-.....+.+..+.
T Consensus       122 ~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~  194 (215)
T COG0357         122 VHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVF  194 (215)
T ss_pred             ehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence            666666654222119999997433       3556666678899999987543   334566777777788888776554


Q ss_pred             CCCCCC-CCceEEEE
Q 019879          307 HEDGPL-VPEKILVA  320 (334)
Q Consensus       307 ~~~~~~-~~e~~l~~  320 (334)
                      ...-|. ..++.|+.
T Consensus       195 ~~~~p~~~~~r~l~i  209 (215)
T COG0357         195 SLTVPELDGERHLVI  209 (215)
T ss_pred             EeecCCCCCceEEEE
Confidence            433332 23454443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.36  E-value=0.002  Score=63.27  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             CccccchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccHHHH----HHHhCCCcEEEEEeccCChhhHHHHHHcC
Q 019879          151 SAESYQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAA----AIQSSKLWVMNVVPTLADKNTLGVIYERG  225 (334)
Q Consensus       151 ~~e~f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~faa----~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg  225 (334)
                      .+|+|...++.  .....+.. +...+..+  ..|+|+|||.|.=..    +|...+. ....+|+|+|.++|+.+.++=
T Consensus        50 lpEYYptr~E~--~iL~~~~~~Ia~~i~~~--~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L  124 (319)
T TIGR03439        50 SPEYYLTNDEI--EILKKHSSDIAASIPSG--SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAEL  124 (319)
T ss_pred             CCccCChHHHH--HHHHHHHHHHHHhcCCC--CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhh
Confidence            46777777663  55555533 44455543  479999999998444    4433221 246899999999998765531


Q ss_pred             c------------cchhhhhcccCCC--CCCccceEE-echhhccccCcCCHHHHHHHHHH-hhcCCeEEEEE
Q 019879          226 L------------IGIYHDWCEAFST--YPRTYDLIH-AHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIR  282 (334)
Q Consensus       226 l------------i~~~~d~~e~l~~--yp~sFDlVh-a~~vfs~~~~~c~~~~~L~Em~R-VLRPGG~lii~  282 (334)
                      .            .+.+.+-.+-++.  .+....++. -.+.|..+. +.....+|.++.+ .|+|||.|+|.
T Consensus       125 ~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       125 PLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             hhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            1            1122111011111  123345554 335666654 3456789999999 99999999995

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.35  E-value=0.00048  Score=65.32  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---ch-hhhhccc-CC-CCCCccce
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GI-YHDWCEA-FS-TYPRTYDL  246 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~-~~d~~e~-l~-~yp~sFDl  246 (334)
                      +-....+||+.|.|+|.++.+|+..-.-...|...|..++..+.|.+.    |+.   .. ..|.|++ |. ..++.||.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            334458999999999999999986311113689999998888776543    442   22 3466643 32 12378999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhh-cCCeEEEEEeC-hhhHHHHHHHHhcccce
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRIL-RPEGAIIIRDE-VDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVL-RPGG~lii~D~-~~~~~~i~~~~~~l~W~  301 (334)
                      |+-.     ++   ++-.++.-+.++| ||||.+++--+ .+.+.+.-..++...|.
T Consensus       117 vfLD-----lp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~  165 (247)
T PF08704_consen  117 VFLD-----LP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT  165 (247)
T ss_dssp             EEEE-----SS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred             EEEe-----CC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence            9765     22   3456888899999 99999888755 34444433334444553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=6.8e-05  Score=66.71  Aligned_cols=44  Identities=27%  Similarity=0.320  Sum_probs=38.1

Q ss_pred             CCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          238 STYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       238 ~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ++|. +|.|+|.|.+|++|+.- ..-..+++|.+|+|||||+|-|+
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence            4565 99999999999999853 34568999999999999999997

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.32  E-value=0.00038  Score=65.93  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH----cCcc---chhhhhc-ccCCC------CC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE----RGLI---GIYHDWC-EAFST------YP  241 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~----Rgli---~~~~d~~-e~l~~------yp  241 (334)
                      ...+.++||.+|+++|.-+.+|+.. +. ...|+.+|.+++...+|.+    -|+.   ....+.+ +-++.      +.
T Consensus        76 ~~~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         76 KLINAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             HHhCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence            3345689999999999877777652 11 1358999998877776533    2431   1111111 11111      24


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++||+|+...      ++......+..+.+.|||||.+++.+
T Consensus       155 ~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        155 GTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             CcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            6999998862      22345577778889999999988753

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.30  E-value=0.002  Score=63.83  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccch--hhh-hcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI--YHD-WCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~--~~d-~~e~l~~yp-~sFDlVha~~v  252 (334)
                      +.+|||==||||+|+...--.|   .+++|.|++..|+.-|...    |+...  +.. .+.. .+++ ++||.|.+.-=
T Consensus       198 G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~-lpl~~~~vdaIatDPP  273 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN-LPLRDNSVDAIATDPP  273 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-CCCCCCccceEEecCC
Confidence            4689999999999865554334   6899999999998865432    11111  111 1223 3587 77999998621


Q ss_pred             hccc--cCcC----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879          253 FSLY--KDKC----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI  294 (334)
Q Consensus       253 fs~~--~~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~  294 (334)
                      ..--  ....    -..++|.++.++|++||++++.-+.+.....++.
T Consensus       274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~  321 (347)
T COG1041         274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEEL  321 (347)
T ss_pred             CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhc
Confidence            1100  0111    1468999999999999999998775544444443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.29  E-value=0.001  Score=68.42  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCC-CCCCccceEE-
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFS-TYPRTYDLIH-  248 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~-~yp~sFDlVh-  248 (334)
                      ......+|||++||.|+=+.+|++.---...|++.|+++..+....++    |+..  +.+.....+. .++.+||.|. 
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            444567999999999997777665310012589999998877655433    4421  1111111222 3568899998 


Q ss_pred             ---ec--hhhccccC----c--CCH-------HHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 ---AH--GLFSLYKD----K--CNI-------EDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 ---a~--~vfs~~~~----~--c~~-------~~~L~Em~RVLRPGG~lii~D~  284 (334)
                         ||  .+|..-++    +  .++       ..+|....+.|||||.|+-++-
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence               55  23332110    0  011       3788999999999999999874

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.28  E-value=0.00068  Score=68.31  Aligned_cols=126  Identities=18%  Similarity=0.231  Sum_probs=80.5

Q ss_pred             chhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhh
Q 019879          156 QEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYH  231 (334)
Q Consensus       156 ~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~  231 (334)
                      ..++-.|-.+-..-..+-..++   .++|||+=|-||+|+.+.+..|+  -.|+.+|.|...|+.+.+.    |+...-|
T Consensus       196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~  270 (393)
T COG1092         196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRH  270 (393)
T ss_pred             cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence            3445555444333222222333   48999999999999999998886  2589999999899987764    4332223


Q ss_pred             hhccc--CC---CCC---CccceEEec-hhhccccC-----cCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          232 DWCEA--FS---TYP---RTYDLIHAH-GLFSLYKD-----KCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       232 d~~e~--l~---~yp---~sFDlVha~-~vfs~~~~-----~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      .|...  |.   -+.   .+||+|+.. -.|.--+.     ..+..+++....++|+|||.++++....
T Consensus       271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            32221  11   122   499999875 12221110     1134588999999999999999998653

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0094  Score=54.56  Aligned_cols=128  Identities=13%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcC-c-cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERG-L-IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rg-l-i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      |+...+..+|++|||+|-...+|++.-.-..-...+|+++..++.    |...+ . ..+..|....+.  +++.|+++-
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvf  116 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVF  116 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEE
Confidence            444456789999999999998888742222346889999877664    33222 2 222222222221  156665544


Q ss_pred             c--hhhc-------------cc--cC-cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEe
Q 019879          250 H--GLFS-------------LY--KD-KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       250 ~--~vfs-------------~~--~~-~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~  305 (334)
                      +  +|..             ..  .+ +.-+.+++..+.-+|-|-|.+++---.. ..++|-+++++-.|.+++.
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence            3  1111             00  11 1124578888889999999999876544 3345555677777776643

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.25  E-value=0.00076  Score=67.62  Aligned_cols=92  Identities=14%  Similarity=0.196  Sum_probs=62.8

Q ss_pred             ceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccceEEechhhc
Q 019879          182 RNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      .+|||++||+|.++..++.. ++  ..|+++|.+++.++.+.+.    ++.  ..+...++.+....+.||+|..+- | 
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-  134 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-  134 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence            47999999999999998653 42  4689999999988876542    321  122222222211146799998862 2 


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                           -....++....+.++|||+++++
T Consensus       135 -----Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 -----GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence                 12356777767889999999998

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.18  E-value=0.0019  Score=58.27  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhcccCCCCC-Cccc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAFSTYP-RTYD  245 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~l~~yp-~sFD  245 (334)
                      +.+.|.+.+...||.+|.|||-|..+++.+++.-.+++.++.+++......++--     .|...+.-..+.-++ .-||
T Consensus        40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D  119 (194)
T COG3963          40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD  119 (194)
T ss_pred             HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence            3345677778899999999999999999999888899999999887776555421     111111111122345 7899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .|+|..=|-.++- ..-..+|.+..--|++||-++--.
T Consensus       120 ~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         120 SVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             eEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence            9999743333321 112478889999999999887654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.18  E-value=0.0013  Score=59.49  Aligned_cols=99  Identities=14%  Similarity=0.085  Sum_probs=61.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhc-ccCCCC--C-CccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWC-EAFSTY--P-RTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~-e~l~~y--p-~sFDlVha  249 (334)
                      ..+|||++||+|.++..++.++..  .|+.+|.++.+++.+.+.    ++.   ..+...+ +.+..+  . ..||+|+.
T Consensus        50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            368999999999999999998863  589999998888766442    221   1111111 111112  2 24888877


Q ss_pred             chhhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeCh
Q 019879          250 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~~  285 (334)
                      .==|..    ...+.++.-+  ..+|+++|.+++....
T Consensus       128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            633321    1233333333  4579999988887544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.13  E-value=0.0013  Score=61.20  Aligned_cols=112  Identities=14%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-CCCCC-CccceEEechhhccccCc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      -++||+||=....+..  ..+ + .+|+++|..++.      -++  ...|..+. +|.-+ +.||+|.++.|+..+++.
T Consensus        53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLns~~------~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLNSQH------PGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             ceEEeecccCCCCccc--ccC-c-eeeEEeecCCCC------CCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            5899999875443222  222 2 579999998522      121  11222221 33334 899999999999998865


Q ss_pred             CCHHHHHHHHHHhhcCCeE-----EEEEeC------hh--hHHHHHHHHhcccceEEEe
Q 019879          260 CNIEDILLEMDRILRPEGA-----IIIRDE------VD--EIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~-----lii~D~------~~--~~~~i~~~~~~l~W~~~~~  305 (334)
                      ..--..++-+++.|||+|.     |+|--+      ..  ..+++..++.+|......+
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~  179 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY  179 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence            5556899999999999999     777543      23  2357888899999977654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.13  E-value=0.002  Score=63.76  Aligned_cols=107  Identities=12%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CCC------C---C-----
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FST------Y---P-----  241 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~~------y---p-----  241 (334)
                      +|||++||+|.|+..|.+..   ..|+++|.++++++.+.+.    |+  +..+....+. ++.      +   .     
T Consensus       200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            59999999999999888764   2699999999999887654    22  1111111111 110      1   0     


Q ss_pred             -CccceEEechhhccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccceEE
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDTK  303 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~~~  303 (334)
                       ..||+|+..      +.+..+ +.++.-   +++|++.++++=.+..+ .-++.+...  +++.
T Consensus       277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~  330 (353)
T TIGR02143       277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE  330 (353)
T ss_pred             cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence             137999876      444443 344443   45599999999766643 345555433  6654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.12  E-value=0.00086  Score=60.15  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CCCCCceEeeecccccHHHH--HHHhCCCc------EEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC
Q 019879          177 DSGRYRNIMDMNAGFGGFAA--AIQSSKLW------VMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP  241 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa--~L~~~~v~------v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp  241 (334)
                      .......|||-=||+|++..  ++....+.      ...+.+.|+++.++..+.+.    |+.   ......+..++..+
T Consensus        25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~  104 (179)
T PF01170_consen   25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPD  104 (179)
T ss_dssp             T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTT
T ss_pred             CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccccc
Confidence            34445789999999999873  33333321      12378999999998876543    321   12221223344334


Q ss_pred             CccceEEechhhccc-cCc----CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEE
Q 019879          242 RTYDLIHAHGLFSLY-KDK----CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       242 ~sFDlVha~~vfs~~-~~~----c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~  304 (334)
                      ++||+|+++-=+..- ...    .-...++.|+.|+|+|...+++......    ++.+....|....
T Consensus       105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~  168 (179)
T PF01170_consen  105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRK  168 (179)
T ss_dssp             SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEE
T ss_pred             CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEE
Confidence            899999998433311 111    1124789999999999555555554443    3334444665543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.09  E-value=0.00061  Score=66.24  Aligned_cols=52  Identities=17%  Similarity=0.054  Sum_probs=39.7

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +..+.......++|++||+|+++.++++..-....|+++|.++.++..+.++
T Consensus        12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~   63 (296)
T PRK00050         12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR   63 (296)
T ss_pred             HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence            3334333446899999999999999998631124699999999999998765

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.04  E-value=0.00098  Score=61.31  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             CceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHH----cCc---cchhhhhcccCCCCCCccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~----Rgl---i~~~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      ..+|+||-||.|.|+..++.  ++   ..|+++|..+...+...+    .++   +..++..|..++. ...||-|+++.
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~---~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l  177 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKA---KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL  177 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-S---SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred             ceEEEEccCCccHHHHHHhhhcCc---cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence            47999999999999999887  43   358999999887664322    233   2233444444443 68999998872


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAII  280 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~li  280 (334)
                           +.  ....+|.+..+++|+||.+.
T Consensus       178 -----p~--~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 -----PE--SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -----TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred             -----hH--HHHHHHHHHHHHhcCCcEEE
Confidence                 21  12358888999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.02  E-value=0.0076  Score=62.42  Aligned_cols=43  Identities=23%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             CceEeeecccccHHHHHHHhCC-------CcEEEEEeccCChhhHHHHHH
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSK-------LWVMNVVPTLADKNTLGVIYE  223 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~-------v~v~nVv~vD~s~~~L~~a~~  223 (334)
                      ..+|||.+||+|+|..+++++.       ....++.++|+++..+..+..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            4689999999999998886531       123689999999888876654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.00  E-value=0.00041  Score=64.59  Aligned_cols=92  Identities=20%  Similarity=0.338  Sum_probs=67.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-chhhhhcccCCCCCCccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ...++||+|+|-|.....++..   +..|.+.+.|..|......++.. -...+|.+.    +=.||+|.|-+++    +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlL----D  180 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLL----D  180 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHH----H
Confidence            4579999999999988877653   23477888888887777766642 122334332    1359999997766    4


Q ss_pred             cC-CHHHHHHHHHHhhcC-CeEEEEE
Q 019879          259 KC-NIEDILLEMDRILRP-EGAIIIR  282 (334)
Q Consensus       259 ~c-~~~~~L~Em~RVLRP-GG~lii~  282 (334)
                      +| ++-++|.+++-||+| .|.+|++
T Consensus       181 Rc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  181 RCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             hhcChHHHHHHHHHHhccCCCcEEEE
Confidence            67 578999999999999 9998886

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.00  E-value=0.0018  Score=64.04  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~  259 (334)
                      .....+|+|.|.|..+..+..+--+ +..+-+|.+ ..++.+..-+ .++-|--+.-|-.-| .-|+|+.-.++||+.| 
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD-  251 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD-  251 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCCh-
Confidence            3588999999999999998874222 344444443 2333333222 333332233332223 3469999999999874 


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+..++|+-+.--|+|||.+++-|.
T Consensus       252 edcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  252 EDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEec
Confidence            6789999999999999999999875

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0016  Score=60.65  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHc----------------CccchhhhhcccCCCCC--
Q 019879          181 YRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----------------GLIGIYHDWCEAFSTYP--  241 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~R----------------gli~~~~d~~e~l~~yp--  241 (334)
                      ..+.||+|.|+|.+.+.+.. -+....|+++++..++.++.+.+.                |-..+....|-  --|+  
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr--~g~~e~  160 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR--KGYAEQ  160 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc--ccCCcc
Confidence            36899999999987665542 122334669999887776644332                21111111111  1233  


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +.||.||+...         ...+.+++--.|+|||.+++--..
T Consensus       161 a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~~  195 (237)
T KOG1661|consen  161 APYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVGQ  195 (237)
T ss_pred             CCcceEEEccC---------ccccHHHHHHhhccCCeEEEeecc
Confidence            88999999732         235667888899999999886543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.99  E-value=0.009  Score=57.26  Aligned_cols=110  Identities=18%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC------CCcEEEEEeccCChhhHHHHHHc----Cccch-h-hhhcccCC--CC-
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS------KLWVMNVVPTLADKNTLGVIYER----GLIGI-Y-HDWCEAFS--TY-  240 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~------~v~v~nVv~vD~s~~~L~~a~~R----gli~~-~-~d~~e~l~--~y-  240 (334)
                      +......+|+|-.||+|+|..+..+.      .....++.|+|+++.+..++.-+    |.... . ......|.  .+ 
T Consensus        42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~  121 (311)
T PF02384_consen   42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI  121 (311)
T ss_dssp             HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred             hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence            44455678999999999998777651      01125899999998887765432    22111 0 00111121  12 


Q ss_pred             -CCccceEEechhhccc-------cC----------cCCH-HHHHHHHHHhhcCCeEEEEEeCh
Q 019879          241 -PRTYDLIHAHGLFSLY-------KD----------KCNI-EDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       241 -p~sFDlVha~~vfs~~-------~~----------~c~~-~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                       ...||+|+++-=|...       ..          .... ..++.-+.+.|++||.+.+--+.
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence             2689999998433321       00          0011 14777899999999987665443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.98  E-value=0.011  Score=55.85  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhhhhccc-CCCCCC-ccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEA-FSTYPR-TYD  245 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~d~~e~-l~~yp~-sFD  245 (334)
                      ..++++||=+|-|.|+.+..+++.+ .+..|+.+|+++..++.+++--.          ...+++.+-. +...++ +||
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            3467999999999999999998865 23578888999888887755210          0111111111 122445 999


Q ss_pred             eEEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEEEe
Q 019879          246 LIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       246 lVha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~~~  305 (334)
                      +|+....-..... ..--..+++.+.|.|+|||.+++.-.     ...+..+.+.+++.--.+..+
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~  218 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY  218 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence            9988632111000 00125789999999999999998742     234455556666655555543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.92  E-value=0.0034  Score=62.36  Aligned_cols=108  Identities=14%  Similarity=0.257  Sum_probs=67.2

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccC-CCC--------------
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAF-STY--------------  240 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l-~~y--------------  240 (334)
                      .+|||++||+|.|+.+|.+..   ..|+++|.++.+++.+.+.    |+  +..+....+.+ ..+              
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~  284 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL  284 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence            469999999999999888753   3699999999999877654    32  11111111111 000              


Q ss_pred             -CCccceEEechhhccccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhHH-HHHHHHhcccceEE
Q 019879          241 -PRTYDLIHAHGLFSLYKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEII-KVKKIVGGMRWDTK  303 (334)
Q Consensus       241 -p~sFDlVha~~vfs~~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~~-~i~~~~~~l~W~~~  303 (334)
                       ...||+|+..      +.+..+ +.++.-+   ++|++.++++-.+..+. -++.+..  .++++
T Consensus       285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~  339 (362)
T PRK05031        285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE  339 (362)
T ss_pred             cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence             1258999886      444332 3444443   45899999997766443 3555543  46654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.91  E-value=0.0041  Score=60.13  Aligned_cols=107  Identities=15%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cc---------hhhhhc-ccCCCCCCc
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG---------IYHDWC-EAFSTYPRT  243 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~---------~~~d~~-e~l~~yp~s  243 (334)
                      .+..+++++||=+|-|.|+.++.+++..- +..++-+|+.++.++.+++.-- ..         ...+.. +-+..++++
T Consensus        71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~  149 (282)
T COG0421          71 LLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK  149 (282)
T ss_pred             hhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence            34456668999999999999999998753 4678888898888888776421 10         000000 001224469


Q ss_pred             cceEEechhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YDLIHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||+|+....=. .-.-.  .-..+++.++|.|+|+|.++...
T Consensus       150 fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         150 FDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            99998862211 00000  01589999999999999999983

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.79  E-value=0.021  Score=54.93  Aligned_cols=120  Identities=16%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHc----Cc---cchhhhhcc--------------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----GL---IGIYHDWCE--------------  235 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~R----gl---i~~~~d~~e--------------  235 (334)
                      +.-+||==|||.|+++-.++.+|.   .+.+.+.|--|+-   ++...    +-   -...|.++.              
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            346899999999999999999985   5899999977754   33222    10   011122111              


Q ss_pred             -------------------cCC-CCC-----CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--------
Q 019879          236 -------------------AFS-TYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--------  282 (334)
Q Consensus       236 -------------------~l~-~yp-----~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--------  282 (334)
                                         +|. .|+     ++||.|++.+++-   .-.++-..|..|.++|||||+.|=-        
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID---TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~  209 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID---TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE  209 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee---chHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence                               010 133     4899988774432   2235889999999999999965542        


Q ss_pred             eC-------hh-hHHHHHHHHhcccceEEEe
Q 019879          283 DE-------VD-EIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       283 D~-------~~-~~~~i~~~~~~l~W~~~~~  305 (334)
                      +.       .+ .+++|..++..+.|+....
T Consensus       210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~  240 (270)
T PF07942_consen  210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKE  240 (270)
T ss_pred             CCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence            22       22 4688999999999998653

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.72  E-value=0.0042  Score=61.70  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~  259 (334)
                      +..++||+||++|||+-.|+++|.   .|+++|.. .|-....+-+.+..+....-.+.|-++.+|+|+|..+       
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-------  279 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-------  279 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-------
Confidence            457999999999999999999984   68999966 4544444444332221111111121478999999843       


Q ss_pred             CCHHHHHHHHHHhhcCC--eEEEEE
Q 019879          260 CNIEDILLEMDRILRPE--GAIIIR  282 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPG--G~lii~  282 (334)
                      +.+.+++.=|.+-|..|  ..+|+.
T Consensus       280 e~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        280 EKPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             cCHHHHHHHHHHHHhcCcccEEEEE
Confidence            45677888888888766  356665

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.63  E-value=0.0022  Score=61.14  Aligned_cols=103  Identities=15%  Similarity=0.295  Sum_probs=61.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH--------------------cC-------------
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE--------------------RG-------------  225 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--------------------Rg-------------  225 (334)
                      .++.++||+|||+--+ ..|.... +..+++-.|.++..++....                    .|             
T Consensus        55 ~~g~~llDiGsGPtiy-~~lsa~~-~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIY-QLLSACE-WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             S-EEEEEEES-TT--G-GGTTGGG-TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHH-hhhhHHH-hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            3458999999999544 2333222 45789999998776542211                    01             


Q ss_pred             -ccc-hhh-hhccc--CCC---CCCccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          226 -LIG-IYH-DWCEA--FST---YPRTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       226 -li~-~~~-d~~e~--l~~---yp~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       .+. ++. |..+.  +.+   .|..||+|++...+... ++......+++-+-+.|||||.|++..
T Consensus       133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             010 000 11111  122   23469999999888754 233446699999999999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.59  E-value=0.026  Score=53.01  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=64.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChh----hHHHHHHcCc-cchhhhhccc--CCCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN----TLGVIYERGL-IGIYHDWCEA--FSTYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~----~L~~a~~Rgl-i~~~~d~~e~--l~~yp~sFDlVha~~v  252 (334)
                      ...+||-+|+.+|+...++.+--....-|.+++.|+.    .+.+|.+|-. +.++.|-..+  ...+-...|+|++.  
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D--  150 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD--  150 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE--
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec--
Confidence            3579999999999988888772000024899999984    5668888864 4444331111  01122688999886  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                         ..+..+.+-++.-+..-||+||.+++.-
T Consensus       151 ---VaQp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  151 ---VAQPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             ----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence               2334556777888889999999999874

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.43  E-value=0.0062  Score=58.98  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-chhhhhcccC----CCC--CCccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAF----STY--PRTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~~~d~~e~l----~~y--p~sFDlVha  249 (334)
                      .++|||+=|-||+|+.+.+..|+  ..|+.+|.|..+|+.+.+.    |+. ..+...+++.    .-.  .+.||+|++
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            47999999999999998877774  3689999999999877654    332 1111111111    001  268999988


Q ss_pred             c-hhhcccc--CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 H-GLFSLYK--DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~-~vfs~~~--~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      . -.|..-.  -..+..+++....++|+|||.|+++...
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            6 1222100  0113457888899999999999987654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.36  E-value=0.0073  Score=60.54  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             ceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-CCccceEEechh
Q 019879          182 RNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-PRTYDLIHAHGL  252 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p~sFDlVha~~v  252 (334)
                      -+|||+-||+|.++..++.+  ++  -.|+.+|++++.++.+.+.    ++  +.+++..+..+... ...||+|...- 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence            48999999999999998876  43  4699999999988876543    22  11222222222222 26799998864 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |.      ....++...-+.+++||+|.++
T Consensus       123 fG------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       123 FG------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CC------CcHHHHHHHHHhcccCCEEEEE
Confidence            32      2357888999999999999998

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.32  E-value=0.011  Score=58.78  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--C--c---cchhhhhcccCCCCCCccceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--L---IGIYHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--g--l---i~~~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      -..+.|||+|||.|-+...-++.|+  -.|.+++.| +|.+.|..-  +  +   |.+...-.|+. .+|...|+|++--
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLPEk~DviISEP  251 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELPEKVDVIISEP  251 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCchhccEEEecc
Confidence            3568999999999987766666664  468999988 787754331  1  1   11222222343 4678999999863


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE--e-----ChhhHHHHHHHHhcccce
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR--D-----EVDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D-----~~~~~~~i~~~~~~l~W~  301 (334)
                      +=..+-+ +.+...-.-..|-|+|.|..+=+  |     ..+..-.++.+-+.+-|-
T Consensus       252 MG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy  307 (517)
T KOG1500|consen  252 MGYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY  307 (517)
T ss_pred             chhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence            2222222 22333333456999999986533  2     223223345555555563

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.019  Score=57.40  Aligned_cols=106  Identities=20%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCc--EEEEEeccCChhhHHHHHH--cCccchhhhh-----cccCCCCC--Cccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLW--VMNVVPTLADKNTLGVIYE--RGLIGIYHDW-----CEAFSTYP--RTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~--v~nVv~vD~s~~~L~~a~~--Rgli~~~~d~-----~e~l~~yp--~sFD  245 (334)
                      ..-....|||+|.|.|.-+-++-+  +|  .-+++-+..|+..-.++..  +.......+|     .++.+++|  ..|+
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt  187 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT  187 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence            334567899999999976655543  22  1234444555433223222  1111111122     22334455  7888


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+..+-+-+-...-.+...+..+..+|+|||.|+|.+.
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            888775554433333466788899999999999999874

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.18  E-value=0.018  Score=54.26  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH----HHcCc---cchhhh-hccc----CCCCC-Cc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI----YERGL---IGIYHD-WCEA----FSTYP-RT  243 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a----~~Rgl---i~~~~d-~~e~----l~~yp-~s  243 (334)
                      +.-+.+++||+|.=||.-+.+++..=-...-|+.+|+.++..+..    ...|.   +...+. -++.    +.-++ ++
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            334468999999877764433332100113589999987765543    22333   212221 1122    23355 99


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||+++..    |-  ...-.....+.-|.||+||.+++..
T Consensus       150 fDfaFvD----ad--K~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  150 FDFAFVD----AD--KDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             eeEEEEc----cc--hHHHHHHHHHHHhhcccccEEEEec
Confidence            9999875    22  2234488889999999999999864

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.14  E-value=0.016  Score=53.75  Aligned_cols=134  Identities=14%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH---HHcCc---cchhhhhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI---YERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a---~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ...|+|+||-.|+++..++++-.-...|+++|+. +|-.+.   .=+|-   ..+.....+.   ++ ..+|+|.|...=
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~-p~~~~~~V~~iq~d~~~~~~~~~l~~~---l~~~~~DvV~sD~ap  121 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL-PMKPIPGVIFLQGDITDEDTLEKLLEA---LGGAPVDVVLSDMAP  121 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc-ccccCCCceEEeeeccCccHHHHHHHH---cCCCCcceEEecCCC
Confidence            4789999999999988777642111226666664 231110   00010   0011111121   33 347999865322


Q ss_pred             --------ccccCcCCHHHHHHHHH-HhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEEEecCCCCCCCCceEEE
Q 019879          254 --------SLYKDKCNIEDILLEMD-RILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILV  319 (334)
Q Consensus       254 --------s~~~~~c~~~~~L~Em~-RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~  319 (334)
                              .|+.. -.+..+..||. ++|+|||.+++.+.     .+.+..++..+..++=..  +..-. +...|-+++
T Consensus       122 ~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~K--P~aSR-~~S~E~y~v  197 (205)
T COG0293         122 NTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFK--PKASR-KRSREIYLV  197 (205)
T ss_pred             CcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEec--Ccccc-CCCceEEEE
Confidence                    22211 12334555554 59999999999763     345555665555543221  11110 113588888


Q ss_pred             EEe
Q 019879          320 AVK  322 (334)
Q Consensus       320 ~~K  322 (334)
                      +.+
T Consensus       198 ~~~  200 (205)
T COG0293         198 AKG  200 (205)
T ss_pred             Eec
Confidence            865

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.039  Score=56.85  Aligned_cols=99  Identities=12%  Similarity=0.246  Sum_probs=72.1

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-----chhhhhcccCCCCC-CccceEEechhhccc
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-----GIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-----~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ++|=+|||.=.+...|.+.|.  .+|+-+|+|+-.++....|+.-     ......... ..|+ .|||+|+.-..|.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal  127 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDAL  127 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchh-ccCCCcceeEEEecCccccc
Confidence            899999999999999999876  4799999998877776666531     111111112 3577 999999988877775


Q ss_pred             cCcC-------CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKC-------NIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c-------~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ...+       .....+.|++|+|+|||.++.-.-
T Consensus       128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            3222       224788999999999998776544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.96  E-value=0.012  Score=53.28  Aligned_cols=99  Identities=20%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hh-hhhcccCCCC---CCccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IY-HDWCEAFSTY---PRTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~-~d~~e~l~~y---p~sFDlVha  249 (334)
                      ..+|||+=||+|.++..-+.+|+.  .|+-+|.+...+..+.+.    ++..   ++ .|....+...   ...||+|++
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            479999999999999988888863  689999998877765543    2211   11 1111112112   389999988


Q ss_pred             chhhccccCcCC--HHHHHHHHH--HhhcCCeEEEEEeChh
Q 019879          250 HGLFSLYKDKCN--IEDILLEMD--RILRPEGAIIIRDEVD  286 (334)
Q Consensus       250 ~~vfs~~~~~c~--~~~~L~Em~--RVLRPGG~lii~D~~~  286 (334)
                      .==+     ...  +..++.-+.  .+|+++|.+++-....
T Consensus       121 DPPY-----~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPY-----AKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             --ST-----TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCc-----ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            7211     112  256666665  7999999999976443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.95  E-value=0.017  Score=49.53  Aligned_cols=44  Identities=18%  Similarity=0.245  Sum_probs=35.3

Q ss_pred             CCCceEeeecccccHHHHHHHh-----CCCcEEEEEeccCChhhHHHHHHc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQS-----SKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~-----~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      .+...|+|+|||-|.++..|..     .  ....|+++|.++..++.+.+|
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~   72 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR   72 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence            5678999999999999988887     3  235799999998777765554

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.89  E-value=0.03  Score=52.65  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCC-CccceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      .+.++||.+|=|-|-...++.+++..-  =+-++.+++.++..++-|.      +..-..|-..+++.| +.||-|.-..
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~--H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDE--HWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcc--eEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence            567899999999999888888865321  2334567788887766553      222334555677888 8999997653


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .=.|+   +++..+.+-+.|.|||||.+-+...
T Consensus       178 y~e~y---Edl~~~hqh~~rLLkP~gv~SyfNg  207 (271)
T KOG1709|consen  178 YSELY---EDLRHFHQHVVRLLKPEGVFSYFNG  207 (271)
T ss_pred             hhhHH---HHHHHHHHHHhhhcCCCceEEEecC
Confidence            22343   3577888899999999999887653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.81  E-value=0.036  Score=56.63  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=71.1

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCCCC--C-C
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFSTY--P-R  242 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~~y--p-~  242 (334)
                      .+..+......+|||+=||.|+|+..|+++.   ..|+++++++++++.|.+.    |+..  ......+.+.+-  . .
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~  361 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY  361 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence            3334444455789999999999999999764   5689999998888865442    3221  111223333221  2 5


Q ss_pred             ccceEEechhhccccCcCCHH-HHHHHHHHhhcCCeEEEEEeChhhH
Q 019879          243 TYDLIHAHGLFSLYKDKCNIE-DILLEMDRILRPEGAIIIRDEVDEI  288 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~-~~L~Em~RVLRPGG~lii~D~~~~~  288 (334)
                      .||+|+..      +.++.+. .+++++ --++|-..+++|=++..+
T Consensus       362 ~~d~VvvD------PPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         362 KPDVVVVD------PPRAGADREVLKQL-AKLKPKRIVYVSCNPATL  401 (432)
T ss_pred             CCCEEEEC------CCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHHH
Confidence            88999876      6666665 555555 446888899999776543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=95.66  E-value=0.062  Score=53.41  Aligned_cols=109  Identities=20%  Similarity=0.276  Sum_probs=66.9

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccCC-CCC--Cc
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFS-TYP--RT  243 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l~-~yp--~s  243 (334)
                      .+......+||||.++.|+=+.+|++.. -...-|+++|.++.-+....++    |+..   ..+|- ..++ .++  ..
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~-~~~~~~~~~~~~  229 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA-RRLAELLPGGEK  229 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-ccccccccccCc
Confidence            3566667899999999999666666531 1113379999998766654443    5432   12221 1122 223  35


Q ss_pred             cceEEec------hhhcccc------CcCCH-------HHHHHHHHHhhcCCeEEEEEeC
Q 019879          244 YDLIHAH------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       244 FDlVha~------~vfs~~~------~~c~~-------~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ||.|...      .++..-+      ...++       ..+|....++|||||.|+-++-
T Consensus       230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            9999753      4453111      01111       2788999999999999999863

>PRK13699 putative methylase; Provisional

Probab=95.59  E-value=0.024  Score=52.91  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhhcCCeEEEEEe
Q 019879          262 IEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++.++.|++|||||||.+++.-
T Consensus        51 ~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699         51 LQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEe
Confidence            4589999999999999988643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.08  E-value=0.051  Score=48.38  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhh-hcccCCC--CC-CccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHD-WCEAFST--YP-RTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d-~~e~l~~--yp-~sFDlVha~~vf  253 (334)
                      -....++|+|||+|-+..+..-.+.  -.|+|+|+.++.|++...... ..+..+ .|.+...  +. +.||.++.+-=|
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            3457899999999987644444332  358999999999987543321 011111 1122211  23 899999998777


Q ss_pred             ccccCcCCHH--HHHHHHHH
Q 019879          254 SLYKDKCNIE--DILLEMDR  271 (334)
Q Consensus       254 s~~~~~c~~~--~~L~Em~R  271 (334)
                      .--....|++  +...+|.|
T Consensus       125 GTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen  125 GTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             CcccccccHHHHHHHHHHHH
Confidence            6433334444  44555555

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.07  E-value=0.051  Score=52.30  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chh-hhhcccCCCCC-CccceE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIY-HDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~-~d~~e~l~~yp-~sFDlV  247 (334)
                      |.......||||.||.|+-+.+|++.-.--..|++.|.+..-+....++    |+.  ... .|-....+.++ ..||.|
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V  160 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV  160 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence            4555567899999999997777666311012589999998877755443    431  112 22111111123 469999


Q ss_pred             Eec----h--hhcccc------CcCCH-------HHHHHHHHHhh----cCCeEEEEEeCh----hhHHHHHHHHhc
Q 019879          248 HAH----G--LFSLYK------DKCNI-------EDILLEMDRIL----RPEGAIIIRDEV----DEIIKVKKIVGG  297 (334)
Q Consensus       248 ha~----~--vfs~~~------~~c~~-------~~~L~Em~RVL----RPGG~lii~D~~----~~~~~i~~~~~~  297 (334)
                      ...    .  ++..-+      ...++       ..+|....+.|    ||||.++-++-.    +.-.-|+.+++.
T Consensus       161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~  237 (283)
T PF01189_consen  161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR  237 (283)
T ss_dssp             EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred             hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence            753    2  233211      01111       17889999999    999999999743    222345555444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.98  E-value=0.029  Score=50.20  Aligned_cols=108  Identities=19%  Similarity=0.366  Sum_probs=55.1

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cch-hhhhcccCCCCC-C-ccceEEec-
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGI-YHDWCEAFSTYP-R-TYDLIHAH-  250 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~-~~d~~e~l~~yp-~-sFDlVha~-  250 (334)
                      +.|+|+-||.||.+.+++...   -.|+++|+++..+..++..    |.   +.. ..|+.+-+..+. + .||+|+++ 
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            379999999999999999874   3689999999888876543    32   111 123333222333 2 28999976 


Q ss_pred             ----------hhhcc--ccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHH
Q 019879          251 ----------GLFSL--YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKI  294 (334)
Q Consensus       251 ----------~vfs~--~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~  294 (334)
                                .+|..  .....++.+++..+.++- |. .+++--...-+..+.++
T Consensus        78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~n-v~l~LPRn~dl~ql~~~  131 (163)
T PF09445_consen   78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PN-VVLFLPRNSDLNQLSQL  131 (163)
T ss_dssp             -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHHT
T ss_pred             CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CC-EEEEeCCCCCHHHHHHH
Confidence                      13322  112234667777765554 33 22222222234455554

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.91  E-value=0.24  Score=50.08  Aligned_cols=18  Identities=22%  Similarity=0.480  Sum_probs=15.4

Q ss_pred             CC-CccceEEechhhcccc
Q 019879          240 YP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       240 yp-~sFDlVha~~vfs~~~  257 (334)
                      || +|.+++|+++.+|.+.
T Consensus       158 fP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             cCCCceEEEEeeccceecc
Confidence            67 9999999999888654

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.83  E-value=0.038  Score=46.40  Aligned_cols=40  Identities=13%  Similarity=0.113  Sum_probs=31.9

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE  223 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~  223 (334)
                      +|||+|||.|.++..++..+.. ..|+++|.++.+.+.+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHH
Confidence            4899999999999988876432 268999999888876554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.75  E-value=0.36  Score=46.73  Aligned_cols=139  Identities=16%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH-----cCcc---chhhhhcccCCCCC-CccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE-----RGLI---GIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~-----Rgli---~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      .+++|+=+|+|.=-+.+.+..+ ......|+++|.+++..+.+++     .||-   .+....... .+++ ..||+|+-
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~-~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD-VTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG-G-GG----SEEEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc-cccccccCCEEEE
Confidence            3569999999988777666553 1223568899999888776532     1221   111111111 2355 89999987


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh---H-HHHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE---I-IKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~---~-~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      .....  .+...-+++|..+.+.++||..+++|.....   + ..+.. ...-.|++-...|..++ .-+-++|+||.
T Consensus       199 AalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~-~~l~gf~~~~~~hP~~~-ViNSvv~~rk~  272 (276)
T PF03059_consen  199 AALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDP-EDLRGFEVLAVVHPTDE-VINSVVFARKK  272 (276)
T ss_dssp             -TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----T-GGGTTEEEEEEE---TT----EEEEE---
T ss_pred             hhhcc--cccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCCh-HHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence            65443  2344678999999999999999999965431   1 11111 12226777655565443 56789999985

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=94.65  E-value=0.0083  Score=48.28  Aligned_cols=95  Identities=17%  Similarity=0.095  Sum_probs=34.8

Q ss_pred             eeecccccHHHHHHHhC--CCcEEEEEeccCCh---hhHHHHHHcCccchhhhhc----ccCCCCC-CccceEEechhhc
Q 019879          185 MDMNAGFGGFAAAIQSS--KLWVMNVVPTLADK---NTLGVIYERGLIGIYHDWC----EAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       185 LD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~---~~L~~a~~Rgli~~~~d~~----e~l~~yp-~sFDlVha~~vfs  254 (334)
                      |.+|+..|..+..|++.  ......++.+|..+   ...+.+.+.++...++-..    +.++.++ ++||+|+...  .
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence            57898899877776652  11112578888875   3333444334322211111    1123355 8999998763  2


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |-  ......-+..+.+.|+|||.+++-|
T Consensus        79 H~--~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HS--YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            21  1234567888889999999999876

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=94.64  E-value=0.11  Score=47.50  Aligned_cols=102  Identities=23%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcc-cCCCCC--CccceEE
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCE-AFSTYP--RTYDLIH  248 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e-~l~~yp--~sFDlVh  248 (334)
                      -...++||+=||+|.++..-+.+|+.  .++-+|.+...+.++.+.    ++.   ..++..+. .+....  +.||+|+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf  119 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF  119 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence            34579999999999999998888864  578888887777766553    211   11221111 122233  3599998


Q ss_pred             echhhccccCcCCH--H--HHHHHHHHhhcCCeEEEEEeChh
Q 019879          249 AHGLFSLYKDKCNI--E--DILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       249 a~~vfs~~~~~c~~--~--~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      ..-=|.    ...+  +  -.+.+-...|+|+|.+++-...+
T Consensus       120 lDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            873333    1112  2  23334668899999999987655

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.62  E-value=0.49  Score=46.93  Aligned_cols=118  Identities=13%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCC------
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFST------  239 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~------  239 (334)
                      ++..++.... +|||+-||.|+|+..|++...   .|+++++.++++..|.+.    |+.  ..+..-++++..      
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r  264 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR  264 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence            4444554333 799999999999999998753   589999998888866532    321  112111222210      


Q ss_pred             ---------CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEE
Q 019879          240 ---------YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       240 ---------yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~  303 (334)
                               .. ..+|+|+..      +.+..+...+.++  +.++.=.+++|=.+. ...-++.+.+  .+++.
T Consensus       265 ~~~~~~~~~~~~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~  329 (352)
T PF05958_consen  265 EFNRLKGIDLKSFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLE  329 (352)
T ss_dssp             GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred             HHHhhhhhhhhhcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence                     11 257888665      4454443333333  235667888885555 3344555544  46554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.50  E-value=0.028  Score=50.56  Aligned_cols=46  Identities=13%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             CCCCccceEEechhhccc-----cCc---CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          239 TYPRTYDLIHAHGLFSLY-----KDK---CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       239 ~yp~sFDlVha~~vfs~~-----~~~---c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      -|.++||.+.|.++++|.     -+.   ..-...+.++.|+|||||.|++.-+
T Consensus        59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            467999999999999874     122   2234789999999999999999854

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.47  E-value=0.17  Score=54.57  Aligned_cols=80  Identities=5%  Similarity=-0.007  Sum_probs=44.5

Q ss_pred             EEEeccCChhhHHHHHHc----Ccc---chhhhhcccCC-CCC-CccceEEechhhcc-ccCcCCHHHHHHHH---HHhh
Q 019879          207 NVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFS-TYP-RTYDLIHAHGLFSL-YKDKCNIEDILLEM---DRIL  273 (334)
Q Consensus       207 nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~-~yp-~sFDlVha~~vfs~-~~~~c~~~~~L~Em---~RVL  273 (334)
                      .++++|+++.++..|.+.    |+.   ...+.....++ +++ ++||+|++|-=+.. +....++..+..++   .|.+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            589999999999877653    542   22221112222 333 68999999832221 11112333443444   4444


Q ss_pred             cCCeEEEEEeChh
Q 019879          274 RPEGAIIIRDEVD  286 (334)
Q Consensus       274 RPGG~lii~D~~~  286 (334)
                      .||+.+++-....
T Consensus       338 ~~g~~~~llt~~~  350 (702)
T PRK11783        338 FGGWNAALFSSSP  350 (702)
T ss_pred             CCCCeEEEEeCCH
Confidence            4999887766544

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.064  Score=48.50  Aligned_cols=119  Identities=20%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhH---HHHHHcCccchh--------hhhcccCCCCC-CccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL---GVIYERGLIGIY--------HDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L---~~a~~Rgli~~~--------~d~~e~l~~yp-~sFDlVh  248 (334)
                      .+.||.+|.|.-++|-.|....+.+-.|--.|..+..+   +.+..+.....+        +-|... +... ++||+|.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq-sq~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ-SQQEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH-HHHhhCcccEEE
Confidence            48999999999998888877655445566667654433   333333211111        111111 2233 7999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHhcccceEE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~~l~W~~~  303 (334)
                      |+.-+-.   .+.-+.++.-|++.|||.|..++..+.+  .+++..+........+.
T Consensus       109 aADClFf---dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~  162 (201)
T KOG3201|consen  109 AADCLFF---DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVC  162 (201)
T ss_pred             eccchhH---HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEE
Confidence            9832211   1123578889999999999988877654  45555555544444443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.15  E-value=0.2  Score=46.47  Aligned_cols=108  Identities=22%  Similarity=0.271  Sum_probs=65.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----HcCc-cchhhhhcccCCCCCCccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~Rgl-i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      -+.++|||+|+|.|--+.+-+..|.  ..|+..|+.+...+.+.    ..|. +...+.   +...-|..||+|.++.+|
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~---d~~g~~~~~Dl~LagDlf  152 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHA---DLIGSPPAFDLLLAGDLF  152 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeec---cccCCCcceeEEEeecee
Confidence            3568999999999976555544443  34777888755444322    2232 233332   222334899999999888


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHH
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKI  294 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~  294 (334)
                      -.   +..-.+++.=.+|+..-|-.+++-|+.+   ..++++.+
T Consensus       153 y~---~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~  193 (218)
T COG3897         153 YN---HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL  193 (218)
T ss_pred             cC---chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence            52   2223566775556666666788888765   33445544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.12  E-value=0.11  Score=48.55  Aligned_cols=101  Identities=19%  Similarity=0.303  Sum_probs=52.0

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----------Cc---cchhhhhcccCCCCCCccceEE
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GL---IGIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----------gl---i~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      -.+-|||||+|++...|...--- .-+.|.++-...-+-..+|          |.   +++.+.-  ++-+.||-|---.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~n--amk~lpn~f~kgq  138 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTN--AMKFLPNFFEKGQ  138 (249)
T ss_pred             ceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeecc--chhhccchhhhcc
Confidence            36899999999999999875211 2355655532211111121          11   2222211  1112234444333


Q ss_pred             echhhccccC-----cC---C--HHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          249 AHGLFSLYKD-----KC---N--IEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       249 a~~vfs~~~~-----~c---~--~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      .+-.|..+++     +.   .  -...+.|..=+||+||.++.....
T Consensus       139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            3322222211     10   0  126888999999999998876543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=94.03  E-value=0.26  Score=43.15  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             EEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCC-C-CccceEEechhhccccCc--------CCHHHHHHHHH
Q 019879          208 VVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTY-P-RTYDLIHAHGLFSLYKDK--------CNIEDILLEMD  270 (334)
Q Consensus       208 Vv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~y-p-~sFDlVha~~vfs~~~~~--------c~~~~~L~Em~  270 (334)
                      |.++|+.++.+...++|    ++.   ..+++.=+.+..| + +.+|+++-|  |.+++..        ..-..++...-
T Consensus         2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            78999998888866655    331   1222222344444 3 489999888  5655421        11237899999


Q ss_pred             HhhcCCeEEEEEeC--h----hhHHHHHHHHh---cccceEEEecCCCCCCCCceEEEEEe
Q 019879          271 RILRPEGAIIIRDE--V----DEIIKVKKIVG---GMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       271 RVLRPGG~lii~D~--~----~~~~~i~~~~~---~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      ++|+|||.+++.--  +    +..+.+.+++.   .-.|.+..+...+-...+..+++.+|
T Consensus        80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK  140 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK  140 (140)
T ss_dssp             HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred             HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence            99999999888631  2    23344555544   45688887777766666666777665

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=93.82  E-value=0.26  Score=45.48  Aligned_cols=120  Identities=22%  Similarity=0.187  Sum_probs=53.6

Q ss_pred             CCCccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHH--HHHHHhCCCcEEEEEeccCChhhHHHHHHc--
Q 019879          149 GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGF--AAAIQSSKLWVMNVVPTLADKNTLGVIYER--  224 (334)
Q Consensus       149 g~~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~f--aa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--  224 (334)
                      +++.+.|.+=.-   ..+..   ++..++-.+....+|+|||.|..  .++|.- ++  -..+|+++.+.....+...  
T Consensus        17 ~~s~~~YGEi~~---~~~~~---il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~--~~~~GIEi~~~~~~~a~~~~~   87 (205)
T PF08123_consen   17 SFSSETYGEISP---EFVSK---ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GC--KKSVGIEILPELHDLAEELLE   87 (205)
T ss_dssp             TTCCCCGGGCHH---HHHHH---HHHHTT--TT-EEEEES-TTSHHHHHHHHHH-----SEEEEEE-SHHHHHHHHHHHH
T ss_pred             cCCCcceeecCH---HHHHH---HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CC--cEEEEEEechHHHHHHHHHHH
Confidence            445666655433   22322   33333334457999999999984  334433 22  2368888876543333211  


Q ss_pred             ---------Cc-cchhhhhcccCCCCC------CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          225 ---------GL-IGIYHDWCEAFSTYP------RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       225 ---------gl-i~~~~d~~e~l~~yp------~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                               |. .+.+.-...+|..-+      ..-|+|+++++.  +  ..++...|.++..-||||-.+|-
T Consensus        88 ~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F--~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen   88 ELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--F--DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T---HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             HHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--c--CHHHHHHHHHHHhcCCCCCEEEE
Confidence                     11 000000001111100      234899887532  1  12355667888888988877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=93.74  E-value=0.21  Score=47.87  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=56.6

Q ss_pred             ccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----c
Q 019879          152 AESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----I  227 (334)
Q Consensus       152 ~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i  227 (334)
                      ...|-.|...=.+.++       .++.....+||.+|+|.|.++..|++++.   .|+++++++.+++...++.-    +
T Consensus         9 GQnFL~d~~v~~kIv~-------~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~   78 (259)
T COG0030           9 GQNFLIDKNVIDKIVE-------AANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNL   78 (259)
T ss_pred             ccccccCHHHHHHHHH-------hcCCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccce
Confidence            4567777665333332       22333357999999999999999999874   47888888888887766631    2


Q ss_pred             chhhhhcccCCCCC--C--ccceEEec
Q 019879          228 GIYHDWCEAFSTYP--R--TYDLIHAH  250 (334)
Q Consensus       228 ~~~~d~~e~l~~yp--~--sFDlVha~  250 (334)
                      ...+   +++.-++  +  .++.|++|
T Consensus        79 ~vi~---~DaLk~d~~~l~~~~~vVaN  102 (259)
T COG0030          79 TVIN---GDALKFDFPSLAQPYKVVAN  102 (259)
T ss_pred             EEEe---CchhcCcchhhcCCCEEEEc
Confidence            2222   2333333  3  68899888

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.68  E-value=0.026  Score=47.42  Aligned_cols=61  Identities=13%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             ccceEEechhhc--cccCc-CCHHHHHHHHHHhhcCCeEEEEEeCh--------hhHHHHHHHHhcccceEE
Q 019879          243 TYDLIHAHGLFS--LYKDK-CNIEDILLEMDRILRPEGAIIIRDEV--------DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       243 sFDlVha~~vfs--~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~~~~~l~W~~~  303 (334)
                      .||+|.|-+|--  |+... +.+..++..+++.|||||.||+--++        ...+.+...++++++...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~   72 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPD   72 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GG
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChH
Confidence            489999976544  44321 34779999999999999999997542        233556666777776543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=93.62  E-value=0.4  Score=44.41  Aligned_cols=130  Identities=18%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhhhhcccCCCCC-CccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      ..+|||+||..|.+..--.++---..-|.++|+- .   +.--+|.          ...+...-|.+   | +..|+|.+
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll-h---~~p~~Ga~~i~~~dvtdp~~~~ki~e~l---p~r~VdvVlS  142 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL-H---IEPPEGATIIQGNDVTDPETYRKIFEAL---PNRPVDVVLS  142 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee-e---ccCCCCcccccccccCCHHHHHHHHHhC---CCCcccEEEe
Confidence            4799999999999876555531011125555542 1   1111221          01122222333   5 88899987


Q ss_pred             chhh--------cccc--CcCCHHHHHHHHHHhhcCCeEEEEEe-----ChhhHHHHHHHHhcccceEEEecCCCCCCCC
Q 019879          250 HGLF--------SLYK--DKCNIEDILLEMDRILRPEGAIIIRD-----EVDEIIKVKKIVGGMRWDTKMVDHEDGPLVP  314 (334)
Q Consensus       250 ~~vf--------s~~~--~~c~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~  314 (334)
                      .+.=        -|+.  +-|+  .+|.=---.|+|+|.|++--     ..+...++++.+..++=  ..++.-.+ ...
T Consensus       143 DMapnaTGvr~~Dh~~~i~LC~--s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~--vKP~Asr~-eS~  217 (232)
T KOG4589|consen  143 DMAPNATGVRIRDHYRSIELCD--SALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK--VKPDASRD-ESA  217 (232)
T ss_pred             ccCCCCcCcchhhHHHHHHHHH--HHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe--eCCccccc-ccc
Confidence            6321        1211  1111  22322334567999999852     23344556666554432  12221111 147


Q ss_pred             ceEEEEEe
Q 019879          315 EKILVAVK  322 (334)
Q Consensus       315 e~~l~~~K  322 (334)
                      |.+|+|++
T Consensus       218 E~y~v~~~  225 (232)
T KOG4589|consen  218 ETYLVCLN  225 (232)
T ss_pred             ceeeeeee
Confidence            99999986

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.58  E-value=0.34  Score=45.11  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=60.6

Q ss_pred             CceEeeecccccHHHHHHHhC---CCcEEEEEeccCChh------hHH-HHHHcCcc--chhhhhcccCCCCCCccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS---KLWVMNVVPTLADKN------TLG-VIYERGLI--GIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~---~v~v~nVv~vD~s~~------~L~-~a~~Rgli--~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      ..+|.|+=-|.|.|.+-|...   ...|.+++|.+...-      .+. .+++.+..  ..+....-++ +-|+-.|++.
T Consensus        49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-~~pq~~d~~~  127 (238)
T COG4798          49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-GAPQKLDLVP  127 (238)
T ss_pred             CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-CCCCcccccc
Confidence            479999999999999888762   225677777765211      111 22222221  1111000112 2236667766


Q ss_pred             echhhc--cc--cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFS--LY--KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs--~~--~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+...|  |.  .+.....++..++++.|||||.+.+-|+
T Consensus       128 ~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         128 TAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             cchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            543333  11  1233467999999999999999999875

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=93.51  E-value=0.14  Score=49.77  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--c--chhhhhcccCCCCC-CccceEEec-----
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--I--GIYHDWCEAFSTYP-RTYDLIHAH-----  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i--~~~~d~~e~l~~yp-~sFDlVha~-----  250 (334)
                      ...||.+|-|||.++..|++.+.   .|+++++++.|+....+|+-  .  +.+.-.-.++.--+ -.||+++++     
T Consensus        59 tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQI  135 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccc
Confidence            47899999999999999999875   58999999999998888742  2  11111112333344 678998885     


Q ss_pred             ---hhhcccc----CcCCHHHHHHHH--HHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879          251 ---GLFSLYK----DKCNIEDILLEM--DRILRPEGAIIIRDE--VDEIIKVKKIVG  296 (334)
Q Consensus       251 ---~vfs~~~----~~c~~~~~L~Em--~RVLRPGG~lii~D~--~~~~~~i~~~~~  296 (334)
                         .||-.+.    -+|..-.+=+|+  .-+-|||-.++++-.  .+.+.+++-+++
T Consensus       136 SSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~K  192 (315)
T KOG0820|consen  136 SSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMK  192 (315)
T ss_pred             cCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhee
Confidence               3444332    234322222222  225678887777643  344555555443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=93.40  E-value=0.76  Score=42.43  Aligned_cols=114  Identities=12%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             EeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCccchhhh-hcccCCCCC-C-ccceEEechhhccc
Q 019879          184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLIGIYHD-WCEAFSTYP-R-TYDLIHAHGLFSLY  256 (334)
Q Consensus       184 VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli~~~~d-~~e~l~~yp-~-sFDlVha~~vfs~~  256 (334)
                      |.|+||--|.+..+|.+++. +..++++|+++.-|+.|.+    .|+.....- ....|..++ + ..|.|+...+=.  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--
Confidence            68999999999999999874 4679999999887775544    354322211 122344454 3 378776553221  


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~  304 (334)
                         ..+.++|.+....++..-.||+.-... ...+++.+....|.+..
T Consensus        78 ---~lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~  121 (205)
T PF04816_consen   78 ---ELIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIID  121 (205)
T ss_dssp             ---HHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEE
T ss_pred             ---HHHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEE
Confidence               236788888888888888899987755 46788899999998763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.26  E-value=2.2  Score=40.01  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhh----HHHHHHcCc-cchhhhhcccCC-CCC---CccceEEe
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNT----LGVIYERGL-IGIYHDWCEAFS-TYP---RTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~----L~~a~~Rgl-i~~~~d~~e~l~-~yp---~sFDlVha  249 (334)
                      ....+||=+|+.+|+...+..+--. -.-+.+++.|+.+    |..+.+|.. +..+.| + .+| .|.   ...|+|++
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D-A-~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED-A-RKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc-c-CCcHHhhhhcccccEEEE
Confidence            3458999999999999988887311 1237888888764    557777753 444433 1 111 122   56788876


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .     ..|+.+.+-+..-+..-||+||++++.
T Consensus       152 D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         152 D-----VAQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             e-----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence            5     345566777888899999999988875

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=93.24  E-value=0.28  Score=48.78  Aligned_cols=110  Identities=16%  Similarity=0.067  Sum_probs=75.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      +.+|+||=||.|.|+..++.++.- . |+++|+.+.......+.    ++-+   ..+..|..+.+..+.||-|++++.-
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            478999999999999999988753 2 99999999877754432    2222   2233333333333899999987432


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-------hHHHHHHHHhccc
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-------EIIKVKKIVGGMR  299 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-------~~~~i~~~~~~l~  299 (334)
                             +...++-..-+.||+||.+.+-+...       ....+++...++.
T Consensus       267 -------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~  312 (341)
T COG2520         267 -------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG  312 (341)
T ss_pred             -------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence                   22457777888999999999876431       4566777766663

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.22  E-value=0.1  Score=51.55  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             CCCCceEeeecccccHHHHHHHhC---------------CCcEEEEEeccCChhhHHHHHHc-----------C------
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSS---------------KLWVMNVVPTLADKNTLGVIYER-----------G------  225 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~---------------~v~v~nVv~vD~s~~~L~~a~~R-----------g------  225 (334)
                      ..+.-+|.|+||..|..+..+.+.               ..-...|.-.|...+--...+..           +      
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            345679999999999866544321               11235677777765532222111           0      


Q ss_pred             ccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879          226 LIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       226 li~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ..+.+.   +.  -|| +|.|++|+++.+|.+.
T Consensus        94 vpgSFy---~r--LfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   94 VPGSFY---GR--LFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             EES-TT---S----S-TT-EEEEEEES-TTB-S
T ss_pred             cCchhh---hc--cCCCCceEEEEEechhhhcc
Confidence            111111   11  267 9999999999888653

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK11524 putative methyltransferase; Provisional

Probab=93.19  E-value=0.26  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          262 IEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +..+|.|+.|+|||||.+++.....
T Consensus        59 l~~~l~~~~rvLK~~G~i~i~~~~~   83 (284)
T PRK11524         59 LYEWIDECHRVLKKQGTMYIMNSTE   83 (284)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEcCch
Confidence            3579999999999999999875544

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.60  E-value=0.8  Score=43.13  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=56.8

Q ss_pred             CceEeeeccc-ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhh----hcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAG-FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG-~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d----~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+||..||| .|.++..++.. +.   +|+.++.++...+.+.+.|.......    ..+.+...+ +.+|+|+...  
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~G~---~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~--  240 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAMGA---AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV--  240 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC--
Confidence            4688888876 36677777663 53   47777778788887776664221111    001010123 6789886431  


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                             .....+.++.|.|+|||.++..
T Consensus       241 -------g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         241 -------GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             -------CCHHHHHHHHHHhhcCCEEEEE
Confidence                   1245888999999999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.03  E-value=0.51  Score=46.74  Aligned_cols=120  Identities=19%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHc----C--------------------c----cch
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYER----G--------------------L----IGI  229 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~R----g--------------------l----i~~  229 (334)
                      .-+||==|||.|++|-.|+..|.   ++-+-+.|--|+-   ++..-    +                    |    +..
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            35799999999999999988763   4566566655543   22211    1                    0    000


Q ss_pred             hhh------------hcccCC-CCC-----CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--------e
Q 019879          230 YHD------------WCEAFS-TYP-----RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--------D  283 (334)
Q Consensus       230 ~~d------------~~e~l~-~yp-----~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--------D  283 (334)
                      .+-            ++.+|. -|+     ++||+|+..+++-   ...++-..+.-|..+|+|||..|--        |
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d  304 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFED  304 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence            000            112221 133     3699987764432   2336789999999999999987743        3


Q ss_pred             Ch--------h-hHHHHHHHHhcccceEEEec
Q 019879          284 EV--------D-EIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       284 ~~--------~-~~~~i~~~~~~l~W~~~~~~  306 (334)
                      ..        + ..+.+..+++.+.|++....
T Consensus       305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  305 THGVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             CCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            21        1 35678888999999887643

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.79  E-value=0.18  Score=47.65  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ..|-.|...=++.+       ..++......|||+|+|+|.++..|.+.+   .+|+.++.++.+.+...++
T Consensus        10 QnFL~~~~~~~~Iv-------~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~   71 (262)
T PF00398_consen   10 QNFLVDPNIADKIV-------DALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKER   71 (262)
T ss_dssp             SSEEEHHHHHHHHH-------HHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHH
T ss_pred             cCeeCCHHHHHHHH-------HhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHH
Confidence            45666655422222       22333356899999999999999999876   4789999998888877764

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.18  E-value=0.9  Score=43.80  Aligned_cols=104  Identities=16%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             CCCCCceEeeecccccH--HHHHHHh---CCCcEEEEEeccCChhhHHHHHH------cCccchh-hhhccc--CCCCC-
Q 019879          177 DSGRYRNIMDMNAGFGG--FAAAIQS---SKLWVMNVVPTLADKNTLGVIYE------RGLIGIY-HDWCEA--FSTYP-  241 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~--faa~L~~---~~v~v~nVv~vD~s~~~L~~a~~------Rgli~~~-~d~~e~--l~~yp-  241 (334)
                      ....++..||+|||.=+  ..-..++   ..   ..|+-+|..+-.+..+..      +|....+ .|..+.  +..-| 
T Consensus        65 ~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~---aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~  141 (267)
T PF04672_consen   65 EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPD---ARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE  141 (267)
T ss_dssp             CTT---EEEEET--S--SS-HHHHHHHH-TT----EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred             HhcCcceEEEcccCCCCCCCHhHHHHhhCCC---ceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence            33378999999999653  2222222   23   468999998655442211      1111111 111111  10111 


Q ss_pred             --Cccc-----eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          242 --RTYD-----LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       242 --~sFD-----lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                        +.+|     .|....+|||+.+..++..++..+...|-||.+|+|+.
T Consensus       142 ~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  142 VRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             HHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             HHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence              3344     35666799999887899999999999999999999985

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.17  E-value=0.35  Score=48.06  Aligned_cols=90  Identities=16%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             CceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc-cCCCCCCccceEEechhhcccc
Q 019879          181 YRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE-AFSTYPRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       181 ~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e-~l~~yp~sFDlVha~~vfs~~~  257 (334)
                      ...|+=+|+| .|..|..++. .+   .+|+++|.+++-++.+.+-|..-.+..-.+ .+......||+|+..-.     
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-----  238 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-----  238 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence            4667777766 4456777766 34   679999999999999998875332221101 11122345999976522     


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                           ...+...-+.||+||.+++--
T Consensus       239 -----~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         239 -----PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             -----hhhHHHHHHHHhcCCEEEEEC
Confidence                 456778889999999999864

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=91.07  E-value=1  Score=46.16  Aligned_cols=105  Identities=21%  Similarity=0.342  Sum_probs=63.7

Q ss_pred             cCCCCCceEeeecccccH---HHHHHHh-CCCcEEEEEeccCChhhHHHHH----HcCcc---chhhhhcccCC--CCCC
Q 019879          176 LDSGRYRNIMDMNAGFGG---FAAAIQS-SKLWVMNVVPTLADKNTLGVIY----ERGLI---GIYHDWCEAFS--TYPR  242 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~---faa~L~~-~~v~v~nVv~vD~s~~~L~~a~----~Rgli---~~~~d~~e~l~--~yp~  242 (334)
                      +++...-+||||.|..||   +.|+|.. .|+    |++.|.+.+-+..+.    +-|..   ...+|-- .||  -|+.
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~-ef~~~~~~~  311 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR-EFPEKEFPG  311 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcc-cccccccCc
Confidence            456677899999999997   4555544 453    788888777665433    23542   2222211 222  2456


Q ss_pred             ccceEE----ech--hhccccCcC------C------H-HHHHHHHHHhhcCCeEEEEEeCh
Q 019879          243 TYDLIH----AHG--LFSLYKDKC------N------I-EDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       243 sFDlVh----a~~--vfs~~~~~c------~------~-~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +||-|.    |+.  |.+--..-|      +      + .++|.-....+||||+|+-++-.
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            999886    555  554211001      0      1 15666677889999999999743

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=90.66  E-value=2.1  Score=40.85  Aligned_cols=98  Identities=22%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChh--hHHHHHHcCc----------cchhhhhcccCC--CCCCc
Q 019879          180 RYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKN--TLGVIYERGL----------IGIYHDWCEAFS--TYPRT  243 (334)
Q Consensus       180 ~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~--~L~~a~~Rgl----------i~~~~d~~e~l~--~yp~s  243 (334)
                      ...+||.+|+|+|-  .++++...    .+|+-.|...-  .|+...+.+.          +....+|-++..  .++..
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~----~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG----AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc----ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence            46799999999994  33444322    35666666532  2333322221          112235555432  34434


Q ss_pred             -cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          244 -YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       244 -FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                       ||+|.++.++.+....   +.++.=|.-.|--+|.+++...
T Consensus       162 ~~DlilasDvvy~~~~~---e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  162 PFDLILASDVVYEEESF---EGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             cccEEEEeeeeecCCcc---hhHHHHHHHHHhcCCeEEEEEe
Confidence             9999999999865444   4455555556777776666543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.65  E-value=0.9  Score=44.81  Aligned_cols=101  Identities=20%  Similarity=0.110  Sum_probs=61.2

Q ss_pred             CceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-Cc--cchhh--hhcccCCCC-C-CccceEEech
Q 019879          181 YRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-GL--IGIYH--DWCEAFSTY-P-RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-gl--i~~~~--d~~e~l~~y-p-~sFDlVha~~  251 (334)
                      ..+||..|||. |.++..+++. +.  ..|+.++.++.+++.+.+. +.  +....  ++.+.+..+ + +.+|+|+-..
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v  262 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV  262 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence            46899999987 7777777664 43  2478888888888888877 32  11111  122222112 2 4789886531


Q ss_pred             h-------hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          252 L-------FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       252 v-------fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      -       ++++.     ..-+....+.++.|.|+|||.+++..
T Consensus       263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            1       01110     00122568899999999999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=89.68  E-value=1.5  Score=43.23  Aligned_cols=85  Identities=24%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhh
Q 019879          174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..|........+|.=-|.||-+.+++++--. ..|+++|-++++++.+.++            +..|.+.|-++|++  |
T Consensus        14 ~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~--F   78 (310)
T PF01795_consen   14 EALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN--F   78 (310)
T ss_dssp             HHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES---G
T ss_pred             HhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc--H
Confidence            3344445579999999999999999986222 5799999999998887765            23567888899887  4


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAI  279 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~l  279 (334)
                      +      ++...+.+...+-+..|.|
T Consensus        79 ~------~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   79 S------NLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             G------GHHHHHHHTTTTS-EEEEE
T ss_pred             H------HHHHHHHHccCCCccCEEE
Confidence            3      3455666553333444544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=88.82  E-value=1.1  Score=45.54  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h-----hhhhcc-cCC---CCCCccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I-----YHDWCE-AFS---TYPRTYD  245 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~-----~~d~~e-~l~---~yp~sFD  245 (334)
                      ..++||=+|-|-|--++.|++.+ .++.++-+|.+|.|++++...    .+.+ .     .+-..+ +|.   +-.+.||
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            46899999999999899998876 347899999999999987632    1110 0     000011 111   1126899


Q ss_pred             eEEechhhccccCcCC--H-----HHHHHHHHHhhcCCeEEEEEeC
Q 019879          246 LIHAHGLFSLYKDKCN--I-----EDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       246 lVha~~vfs~~~~~c~--~-----~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .|+..     ++|...  +     ..+-.-..|-|+++|.+++.-.
T Consensus       368 ~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         368 VVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             EEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            99876     222221  1     2344455677889999999753

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.75  E-value=3.7  Score=41.58  Aligned_cols=112  Identities=9%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             CCCCCceEeeecccccHHHHHH--HhCCCc-----------------------------EE-------EEEeccCChhhH
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAI--QSSKLW-----------------------------VM-------NVVPTLADKNTL  218 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L--~~~~v~-----------------------------v~-------nVv~vD~s~~~L  218 (334)
                      ++.....++|==||+|+|+...  +..++-                             -.       .+.++|+++.++
T Consensus       188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i  267 (381)
T COG0116         188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI  267 (381)
T ss_pred             CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence            5555578999999999987433  322100                             00       267999999999


Q ss_pred             HHHHHc----Cc---cchhhhhcccCCCCCCccceEEechhhc-cccCcCCHH----HHHHHHHHhhcCCeEEEEEeChh
Q 019879          219 GVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHGLFS-LYKDKCNIE----DILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       219 ~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~~vfs-~~~~~c~~~----~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +.|+..    |+   |.........+.+....+|+|+||-=.. -+.+...++    .+..+|.|.++--+.++|+....
T Consensus       268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~  347 (381)
T COG0116         268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED  347 (381)
T ss_pred             HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence            977653    43   3333222233322228999999982211 111222233    45567778888888899888766


Q ss_pred             hH
Q 019879          287 EI  288 (334)
Q Consensus       287 ~~  288 (334)
                      ..
T Consensus       348 ~~  349 (381)
T COG0116         348 LL  349 (381)
T ss_pred             HH
Confidence            43

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=88.53  E-value=1.2  Score=46.07  Aligned_cols=106  Identities=18%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             CCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHH--cC--ccc--hhhh--hcccCCCCC--Cccc
Q 019879          178 SGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYE--RG--LIG--IYHD--WCEAFSTYP--RTYD  245 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~--Rg--li~--~~~d--~~e~l~~yp--~sFD  245 (334)
                      .-.+..++|+|-|.|.  .++.+.-++ ..--++-||-+..|+..+..  |+  -++  ..+.  .-+.+.|-+  +.||
T Consensus       198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yD  276 (491)
T KOG2539|consen  198 KFRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYD  276 (491)
T ss_pred             ccChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCccccee
Confidence            3456789999887764  444444433 22346778888788775432  22  111  1111  012344555  6699


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHH-hhcCCeEEEEEeC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDR-ILRPEGAIIIRDE  284 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~R-VLRPGG~lii~D~  284 (334)
                      +|+|++.++++.....-.++..+..| ..||||++++-..
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~  316 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK  316 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence            99999999987655555667777765 6899999999764

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=88.14  E-value=3.3  Score=40.46  Aligned_cols=133  Identities=12%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             CccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc
Q 019879          151 SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL  226 (334)
Q Consensus       151 ~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl  226 (334)
                      +.-.|..|...    +-.      .|.-.....|+..|.|.|++.-+++..-.-...+.-+|+++.--+.|++    .|+
T Consensus        86 TQI~Yt~Dia~----I~~------~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi  155 (314)
T KOG2915|consen   86 TQILYTPDIAM----ILS------MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI  155 (314)
T ss_pred             ceEEecccHHH----HHH------HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence            44556666553    222      2333345899999999999998888753333578888988654444443    343


Q ss_pred             c---c-hhhhhcccCCCCC---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE--eChhhHHHHHHHHhc
Q 019879          227 I---G-IYHDWCEAFSTYP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGG  297 (334)
Q Consensus       227 i---~-~~~d~~e~l~~yp---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~--D~~~~~~~i~~~~~~  297 (334)
                      .   . .+.|.|.+  .|+   ..+|.|+-.     ++   .+-.++--.+-+||-+|--+++  --.+.+++.-..+.+
T Consensus       156 ~~~vt~~hrDVc~~--GF~~ks~~aDaVFLD-----lP---aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~  225 (314)
T KOG2915|consen  156 GDNVTVTHRDVCGS--GFLIKSLKADAVFLD-----LP---APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS  225 (314)
T ss_pred             CcceEEEEeecccC--CccccccccceEEEc-----CC---ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh
Confidence            2   2 23466754  333   788888654     22   1223444455589987743333  233445555555777


Q ss_pred             ccceEE
Q 019879          298 MRWDTK  303 (334)
Q Consensus       298 l~W~~~  303 (334)
                      +.|...
T Consensus       226 ~gf~~i  231 (314)
T KOG2915|consen  226 LGFIEI  231 (314)
T ss_pred             CCCceE
Confidence            788543

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.80  E-value=0.29  Score=46.55  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=68.2

Q ss_pred             CceEeeecccccHHHHHHHhC-----CCcEE---EEEeccCChhhHHHHHHcCccchhhhhc-----cc-CCCCC-Cccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-----KLWVM---NVVPTLADKNTLGVIYERGLIGIYHDWC-----EA-FSTYP-RTYD  245 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-----~v~v~---nVv~vD~s~~~L~~a~~Rgli~~~~d~~-----e~-l~~yp-~sFD  245 (334)
                      ..+|.|+.+..|.+...|.++     .-...   -++++|+. .|..+   .|.+....|..     |. +..|. .--|
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ-~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd  117 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQ-PMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD  117 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecc-cCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence            689999999999987777552     10111   28888886 56553   23322111111     11 22356 5789


Q ss_pred             eEEechh-----hcc---ccCcCCHHHHHHHHHHhhcCCeEEEEE-----eChhhHHHHHHHHhccc
Q 019879          246 LIHAHGL-----FSL---YKDKCNIEDILLEMDRILRPEGAIIIR-----DEVDEIIKVKKIVGGMR  299 (334)
Q Consensus       246 lVha~~v-----fs~---~~~~c~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~~~~~l~  299 (334)
                      +|+|...     +|-   +.+..-+..+|.=.-+||||||.|+--     |..-....++.+++++.
T Consensus       118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~  184 (294)
T KOG1099|consen  118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVT  184 (294)
T ss_pred             EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhcee
Confidence            9999743     221   112223446777788999999999863     33334456777766653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=87.37  E-value=1.6  Score=41.76  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=42.6

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCC--CCccceEEec
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTY--PRTYDLIHAH  250 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~y--p~sFDlVha~  250 (334)
                      +|+|+-||.|++...|.+.|+.  .|.++|.++..++... +.... .++...+.+...  ...+|+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~-~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g   69 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYE-ANFPNKLIEGDITKIDEKDFIPDIDLLTGG   69 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHH-HhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence            6999999999999999888754  4889999977666533 32211 122112222221  3569999987

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=87.33  E-value=2  Score=39.99  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccch--hhhhcccCCCCC-CccceEEechhhcccc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGI--YHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~--~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ..+-|+|+|+|-++..-+.+.   -.|.+++..+.....+.+.- +.+.  ..-..++...|+ ..-|+|+|-++=+.+.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi  110 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI  110 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence            579999999997654333321   24788888766655555431 1111  001124556788 8889999986555443


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          258 DKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      . +....++.-+-.-||-.|.+|=
T Consensus       111 ~-E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         111 E-EKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             c-ccccHHHHHHHHHhhcCCcccc
Confidence            2 2233455555556777777663

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=86.95  E-value=2.6  Score=41.34  Aligned_cols=51  Identities=22%  Similarity=0.173  Sum_probs=38.7

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +..+.......++|.=+|.||-+.++++.-.. ..|+++|.++.++..+.++
T Consensus        13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~   63 (305)
T TIGR00006        13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER   63 (305)
T ss_pred             HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence            33344344568999999999999999875212 4699999999999888764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=86.58  E-value=0.18  Score=48.55  Aligned_cols=60  Identities=25%  Similarity=0.582  Sum_probs=41.6

Q ss_pred             eeEeecccccCCceEEEecCCCCcccccccc-CCChHHHHHHHHHHHHHHHhhcccccceecce
Q 019879           14 YMIEVDRVLRPGGYWVLSGPPINWKTNYKAW-QRPKEELQEEQRKIEEIANLLCWEKKSEKGEI   76 (334)
Q Consensus        14 ~l~E~dR~LrpgGy~v~s~pp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~cw~~~~~~~~~   76 (334)
                      ||-.|.++|+|||+||=-||-.|-   +.+. ..++..++=-+++|..+++.+=|+.+.++..+
T Consensus       184 Yi~tI~~lLkpgG~WIN~GPLlyh---~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i  244 (270)
T PF07942_consen  184 YIETIEHLLKPGGYWINFGPLLYH---FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSI  244 (270)
T ss_pred             HHHHHHHHhccCCEEEecCCcccc---CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence            556688999999999999997622   2111 01111233457889999999999998766544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=85.40  E-value=0.87  Score=40.39  Aligned_cols=22  Identities=41%  Similarity=0.603  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhhcCCeEEEEEe
Q 019879          262 IEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +..++.|+.|||||||.+++.-
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~~   56 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIFI   56 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCeeEEEEe
Confidence            5689999999999999988863

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=85.02  E-value=0.43  Score=40.14  Aligned_cols=23  Identities=48%  Similarity=1.063  Sum_probs=14.9

Q ss_pred             eecccccCCceEEEecCCCCcccccc
Q 019879           17 EVDRVLRPGGYWVLSGPPINWKTNYK   42 (334)
Q Consensus        17 E~dR~LrpgGy~v~s~pp~~~~~~~~   42 (334)
                      -+=++|||||+||+-..|  |+. |+
T Consensus        29 ~~~~~L~pGG~lilEpQ~--w~s-Y~   51 (110)
T PF06859_consen   29 RIYSLLRPGGILILEPQP--WKS-YK   51 (110)
T ss_dssp             HHHHHEEEEEEEEEE-----HHH-HH
T ss_pred             HHHHhhCCCCEEEEeCCC--cHH-HH
Confidence            344679999999999886  554 44

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.72  E-value=7.8  Score=37.74  Aligned_cols=134  Identities=18%  Similarity=0.299  Sum_probs=69.4

Q ss_pred             EeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccc-hhhhhcccCCCCC-CccceEEec---hhhccccC
Q 019879          184 IMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIG-IYHDWCEAFSTYP-RTYDLIHAH---GLFSLYKD  258 (334)
Q Consensus       184 VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~yp-~sFDlVha~---~vfs~~~~  258 (334)
                      |+|+=||.|++...|.+.|..+  +.++|..+...+. +++.... .++...+.+.+-. ..+|+++++   .-||....
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~--~~a~e~~~~a~~t-y~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~   77 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKC--VFASEIDKYAQKT-YEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK   77 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeE--EEEEeCCHHHHHH-HHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence            6899999999999999888543  6678888655544 3332211 1111112222111 358999876   23332111


Q ss_pred             ---cCC-HHHHHHHHHHhh---cCCeEEEEEeChh---------hHHHHHHHHhcccceEE--EecC--CCCCCCCceE-
Q 019879          259 ---KCN-IEDILLEMDRIL---RPEGAIIIRDEVD---------EIIKVKKIVGGMRWDTK--MVDH--EDGPLVPEKI-  317 (334)
Q Consensus       259 ---~c~-~~~~L~Em~RVL---RPGG~lii~D~~~---------~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e~~-  317 (334)
                         ..+ -..++.|+.|++   +|.  +++-+++.         .+..|...+..+..++.  +.+.  -.-|+.++++ 
T Consensus        78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f  155 (315)
T TIGR00675        78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIY  155 (315)
T ss_pred             cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEE
Confidence               112 224566666666   774  55555442         22333333444444432  2222  1236667776 


Q ss_pred             EEEEe
Q 019879          318 LVAVK  322 (334)
Q Consensus       318 l~~~K  322 (334)
                      +|+.+
T Consensus       156 ~ia~r  160 (315)
T TIGR00675       156 IVGFR  160 (315)
T ss_pred             EEEEe
Confidence            56655

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.32  E-value=5.4  Score=35.54  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             ecccccHHHHHHHhCCCcEEEEEeccCCh-h-----------hHHHHHHcCccchhhhhcccCCC---CC-CccceEEec
Q 019879          187 MNAGFGGFAAAIQSSKLWVMNVVPTLADK-N-----------TLGVIYERGLIGIYHDWCEAFST---YP-RTYDLIHAH  250 (334)
Q Consensus       187 ~GCG~G~faa~L~~~~v~v~nVv~vD~s~-~-----------~L~~a~~Rgli~~~~d~~e~l~~---yp-~sFDlVha~  250 (334)
                      +|=|-=+|+++|++.-....++++..... +           .++...++|....+.-.+..+..   .. +.||.|+-+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            44455578888887522133555543321 2           22233344432222222333322   23 899999887


Q ss_pred             hhhcccc-----CcC-------CHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYK-----DKC-------NIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~-----~~c-------~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                        |.|.-     ..+       -+..+|+-..++|+|+|.+.++-
T Consensus        83 --FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl  125 (166)
T PF10354_consen   83 --FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL  125 (166)
T ss_pred             --CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              66654     112       23478889999999999999984

>PHA01634 hypothetical protein

Probab=82.69  E-value=3.3  Score=36.27  Aligned_cols=59  Identities=19%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             hhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879          158 DSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE  223 (334)
Q Consensus       158 d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~  223 (334)
                      +...|+.....|..+    + -..++|+|+|++.|.-+.+++-+|+.  -|+++..++...+...+
T Consensus        11 ~c~ywrey~~~Y~~i----d-vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~ee   69 (156)
T PHA01634         11 ECDYWREYPHAYGML----N-VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEE   69 (156)
T ss_pred             cchHHHHHHHHhhhe----e-ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHH
Confidence            467788888777632    1 23589999999999999998888764  58888888665554433

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=81.89  E-value=2.3  Score=40.69  Aligned_cols=118  Identities=10%  Similarity=0.114  Sum_probs=65.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccchhh--hhcccCCC-CCCccceEEechhhccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYH--DWCEAFST-YPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~~~--d~~e~l~~-yp~sFDlVha~~vfs~~  256 (334)
                      +.+|||+|||.=-|+.-......- ..+.+.|++..+++++..-. ..+.-+  .+++-+.. .+.+.|+.+.-=+++.+
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL  184 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred             CchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence            689999999999999877764322 36899999988887654321 111110  11222222 33789999876556544


Q ss_pred             cC-cCCH-HHHHHHHHHhhcCCeEEEEEeChh------------hHHHHHHHHhcccceEEE
Q 019879          257 KD-KCNI-EDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       257 ~~-~c~~-~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~~~~~l~W~~~~  304 (334)
                      .+ .... -.+|.+++   .|  .+++|-+..            +-..++..+..-.|.+..
T Consensus       185 e~q~~g~g~~ll~~~~---~~--~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~  241 (251)
T PF07091_consen  185 ERQRRGAGLELLDALR---SP--HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR  241 (251)
T ss_dssp             HHHSTTHHHHHHHHSC---ES--EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred             HHHhcchHHHHHHHhC---CC--eEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence            21 1111 23333332   22  677775421            335577777788887654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=81.15  E-value=15  Score=35.50  Aligned_cols=89  Identities=19%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             CceEeeecccc-cHHHHHHHh-CCCcEEEEEeccC---ChhhHHHHHHcCccchhhhhc-ccC--CCCCCccceEEechh
Q 019879          181 YRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLA---DKNTLGVIYERGLIGIYHDWC-EAF--STYPRTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~---s~~~L~~a~~Rgli~~~~d~~-e~l--~~yp~sFDlVha~~v  252 (334)
                      ..+||=+|||. |.++..+++ .++   +|+.++.   ++.-++.+.+.|....  +.. +++  ....+.||+|+-.. 
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~---~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~-  246 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGF---EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT-  246 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc-
Confidence            46888888864 345555555 354   4565554   5667777777764321  111 110  00124588875431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                              .-...+.+..++|||||.+++..
T Consensus       247 --------g~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         247 --------GVPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             --------CCHHHHHHHHHHccCCcEEEEEe
Confidence                    11347889999999999998753

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=81.02  E-value=6.7  Score=38.69  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEec
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      +..|........+|.==|.||.+.+++++......++++|-.+.+++.+.++-            .+|...|-+||.+
T Consensus        16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l------------~~~~~r~~~v~~~   81 (314)
T COG0275          16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL------------KEFDGRVTLVHGN   81 (314)
T ss_pred             HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh------------hccCCcEEEEeCc
Confidence            33444444579999999999999999987533356999999999999888752            3456677777776

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=80.56  E-value=6.2  Score=37.08  Aligned_cols=134  Identities=16%  Similarity=0.342  Sum_probs=69.5

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCC--CCCCccceEEec---hhhccc
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFS--TYPRTYDLIHAH---GLFSLY  256 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~--~yp~sFDlVha~---~vfs~~  256 (334)
                      +++|+=||.|++...|.+.|+  --|.++|+++..... +++.. .....|.. .+.  .+|..+|+++++   .-||..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~-y~~N~~~~~~~Di~-~~~~~~l~~~~D~l~ggpPCQ~fS~a   77 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACET-YKANFPEVICGDIT-EIDPSDLPKDVDLLIGGPPCQGFSIA   77 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHH-HHHHHTEEEESHGG-GCHHHHHHHT-SEEEEE---TTTSTT
T ss_pred             cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHh-hhhccccccccccc-ccccccccccceEEEeccCCceEecc
Confidence            699999999999999999884  348899998765553 33322 11111211 111  133358999876   233322


Q ss_pred             c------C-cCCHHHHHHHHHHhhcCCeEEEEEeCh---------hhHHHHHHHHhcccceEE--EecC--CCCCCCCce
Q 019879          257 K------D-KCNIEDILLEMDRILRPEGAIIIRDEV---------DEIIKVKKIVGGMRWDTK--MVDH--EDGPLVPEK  316 (334)
Q Consensus       257 ~------~-~c~~~~~L~Em~RVLRPGG~lii~D~~---------~~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e~  316 (334)
                      -      + +..+-.-+.++-..++|-  +++-+++         ..++.|.+.+..+...+.  +.+.  -..|+.+++
T Consensus        78 g~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R  155 (335)
T PF00145_consen   78 GKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRER  155 (335)
T ss_dssp             STHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EE
T ss_pred             ccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceee
Confidence            1      1 122444555566667894  3443432         234555555555555443  2222  224666666


Q ss_pred             EEE-EEe
Q 019879          317 ILV-AVK  322 (334)
Q Consensus       317 ~l~-~~K  322 (334)
                      +++ +.+
T Consensus       156 ~fivg~r  162 (335)
T PF00145_consen  156 VFIVGIR  162 (335)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            544 444

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=80.54  E-value=2.1  Score=34.97  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=55.1

Q ss_pred             cccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccC-CCCC-CccceEEechhhccccCcCCHH
Q 019879          190 GFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAF-STYP-RTYDLIHAHGLFSLYKDKCNIE  263 (334)
Q Consensus       190 G~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l-~~yp-~sFDlVha~~vfs~~~~~c~~~  263 (334)
                      |.|.++..+++.-.  .+|+.++.++.-++.+.+-|......    ++.+.+ ...+ +.+|+|+=.     .    .-.
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~----g~~   69 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----V----GSG   69 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----S----SSH
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe-----c----CcH
Confidence            46788888876422  57899999988899988877422211    111111 1133 579988532     1    125


Q ss_pred             HHHHHHHHhhcCCeEEEEEe
Q 019879          264 DILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       264 ~~L~Em~RVLRPGG~lii~D  283 (334)
                      ..+.+...+|||||.+++.-
T Consensus        70 ~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   70 DTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             HHHHHHHHHEEEEEEEEEES
T ss_pred             HHHHHHHHHhccCCEEEEEE
Confidence            78999999999999999864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 48/322 (14%), Positives = 88/322 (27%), Gaps = 103/322 (31%)

Query: 17  EVDRVLRPGGYWVLSGPPINWKTNYKAWQRPKEELQEEQRKIEEIANLLCWEKKSEKGEI 76
           +V   +    +W+          N K    P+  L+  Q+ + +I               
Sbjct: 175 KVQCKMDFKIFWL----------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 77  AVWQKKVNDESCRARRDDSRANFCKSSDA-DDVWYKKM-----EGC----ITPYPEVA-- 124
                +++      RR      +        +V   K        C     T + +V   
Sbjct: 225 ----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 125 -----------GGELKAFPER----LYA---------IPPRISSGSIP---GVSAESYQE 157
                                    L           +P  + + + P    + AES ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRD 339

Query: 158 DSNKWK--KHVNAYKKINRL-------LDSGRYRNIMDMNAGFGGF--AAAIQS---SKL 203
               W   KHVN   K+  +       L+   YR + D       F  +A I +   S +
Sbjct: 340 GLATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI 395

Query: 204 W-------VMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY 256
           W       VM VV  L   + +    E+          E       T  +     ++   
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLV----EK-------QPKE------STISI---PSIYLEL 435

Query: 257 KDKCNIE----DILLEMDRILR 274
           K K   E      +++   I +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPK 457

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.66
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.65
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.64
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.64
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.63
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.63
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.62
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.62
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.61
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.61
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.6
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.6
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.59
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.59
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.59
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.59
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.59
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.59
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.59
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.58
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.58
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.58
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.57
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.57
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.57
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.56
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.56
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.55
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.55
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.55
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.55
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.55
3ocj_A	305	Putative exported protein; structural genomics, PS	99.55
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.54
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.54
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.54
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.54
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.54
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.54
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.53
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.53
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.53
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.53
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.53
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.52
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.52
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.52
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.52
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.52
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.51
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.51
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.51
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.5
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.5
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.5
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.5
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.5
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.49
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.49
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.49
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.48
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.48
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.48
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.46
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.46
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.46
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.46
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.46
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.45
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.45
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.45
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.44
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.44
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.44
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.43
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.42
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.42
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.41
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.41
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.38
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.38
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.37
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.37
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.36
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.36
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.35
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.35
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.35
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.35
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.35
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.34
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.34
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.34
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.33
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.33
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.32
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.32
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.32
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.32
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.31
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.31
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.3
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.3
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.29
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.29
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.29
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.29
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.28
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.28
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.28
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.28
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.27
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.26
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.26
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.26
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.25
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.25
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.25
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.25
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.25
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.24
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.24
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.24
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.23
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.23
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.23
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.23
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.23
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.22
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.22
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.22
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.22
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.21
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.21
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.21
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.2
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.2
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.2
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.2
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.2
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.2
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.2
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.2
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.19
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.19
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.19
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.19
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.19
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.19
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.18
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.18
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.18
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.18
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.18
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.17
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.17
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.17
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.15
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.14
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.13
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.13
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.13
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.12
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.12
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.12
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.12
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.11
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.11
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.11
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.11
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.11
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.11
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.11
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.1
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.1
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.09
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.09
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.08
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.08
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.07
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.06
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.05
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.05
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.03
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.03
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.03
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.02
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.02
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.01
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.01
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.01
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.01
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.0
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.99
2o07_A	304	Spermidine synthase; structural genomics, structur	98.99
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.98
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.97
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.97
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.96
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.96
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.96
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.95
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.94
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.93
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.91
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.9
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.89
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.88
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.85
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.84
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.83
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.83
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.83
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.81
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.81
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.81
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.8
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.79
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.79
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.77
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.76
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.76
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.76
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.75
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.74
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.74
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.65
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.65
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.64
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.64
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.64
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.63
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.55
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.55
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.4
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.35
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.34
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.27
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.23
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.19
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.17
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.12
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.11
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.1
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.09
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.06
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.04
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.0
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.99
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.94
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.93
3khk_A	544	Type I restriction-modification system methylation	97.87
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.83
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.82
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.8
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.71
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.7
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.67
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.66
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.65
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.63
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.5
3lkd_A	542	Type I restriction-modification system methyltrans	97.5
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.38
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.35
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.23
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.91
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.82
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.81
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.76
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.65
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.6
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.3
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.67
3ufb_A	530	Type I restriction-modification system methyltran	95.23
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.18
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	95.14
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	94.28
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.24
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.18
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.17
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.02
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.92
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.24
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.04
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	91.98
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.9
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	91.6
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.56
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.11
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.81
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	89.74
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	89.72
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	89.31
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	89.24
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.2
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	89.08
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	89.07
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	88.97
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.93
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	88.51
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.46
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	88.43
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	88.3
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.84
3gms_A	340	Putative NADPH:quinone reductase; structural genom	87.81
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	87.76
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	87.73
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	87.67
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	87.48
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	86.88
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	86.54
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	85.66
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	85.6
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	85.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.49
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	85.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	84.22
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	83.65
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	83.3
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	83.11
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	83.02
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	82.44
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	82.38
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	81.9
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	81.82
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	81.72
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	81.25
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	81.25
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	80.44
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	80.28

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.66  E-value=8.2e-16  Score=134.93  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=99.9

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC---CCCC-CccceEEechhhc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF---STYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l---~~yp-~sFDlVha~~vfs  254 (334)
                      ....+|||+|||+|.++..|++.+.   +|+++|+++.+++.+.+++.+.......+.+   +..+ .+||+|+|+.+|+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL  127 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence            3458999999999999999999864   6999999999999999885433222112222   3344 6699999999887


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--------------------------------hHHHHHHHHhcccceE
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------------------EIIKVKKIVGGMRWDT  302 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--------------------------------~~~~i~~~~~~l~W~~  302 (334)
                       .   .++..+|.++.|+|||||.+++.+...                                ..+.+.+++..-.+.+
T Consensus       128 -~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  203 (227)
T 3e8s_A          128 -H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL  203 (227)
T ss_dssp             -S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred             -h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence             2   357899999999999999999987410                                3467888888888887


Q ss_pred             EEecCCCCC---CCCceEEEEEec
Q 019879          303 KMVDHEDGP---LVPEKILVAVKQ  323 (334)
Q Consensus       303 ~~~~~~~~~---~~~e~~l~~~K~  323 (334)
                      ........+   .....+++++|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          204 VSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             EEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             EEEecCCCCCCCCceeEEEEeecC
Confidence            643221111   123567777763

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.65  E-value=2.8e-16  Score=142.83  Aligned_cols=105  Identities=16%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-Ccc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTY  244 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sF  244 (334)
                      ++..+......+|||+|||+|.++..|++.+.   .|+++|+|+.|++.+.++    |+  +.......+.+ +++ ++|
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~f  104 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERF  104 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCE
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCCCE
Confidence            34444444568999999999999999998753   799999999999987765    32  22222223344 466 999


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|+|+.+++|+.   ++..+|.|+.|+|||||.|++.+
T Consensus       105 D~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          105 HIVTCRIAAHHFP---NPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEhhhhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999999975   57899999999999999999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=1.2e-15  Score=133.31  Aligned_cols=135  Identities=10%  Similarity=0.115  Sum_probs=103.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhccccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~  258 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+++.|++.+.++.. +.......+.+ +++ ++||+|+++.+|+|+. 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~-  116 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDL-SDSPKRWAGLLAWYSLIHMG-  116 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGG-GGSCCCEEEEEEESSSTTCC-
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccccc-ccCCCCeEEEEehhhHhcCC-
Confidence            46899999999999999999864   68999999999999988732 22222223334 355 9999999999999985 


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeChh----------------hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDEVD----------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      ..++..+|.++.|+|||||.+++.+...                ..+.+.+++....+++.......+  .+...|...|
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~  194 (203)
T 3h2b_A          117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA  194 (203)
T ss_dssp             TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence            3578999999999999999999986321                257788888889998875554433  4555555554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.64  E-value=1.4e-15  Score=134.20  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCCCCCccce
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~yp~sFDl  246 (334)
                      |..++..+......+|||+|||+|.++..|++.+   .+|+++|+++.+++.+.++..  +.......+.+ +++++||+
T Consensus        34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~fD~  109 (220)
T 3hnr_A           34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF-EVPTSIDT  109 (220)
T ss_dssp             HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC-CCCSCCSE
T ss_pred             HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc-CCCCCeEE
Confidence            3334443333345799999999999999999886   379999999999999888732  22222222333 33489999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|+.+|+|+.+. ....+|.++.|+|||||.+++.+.
T Consensus       110 v~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          110 IVSTYAFHHLTDD-EKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             EEEESCGGGSCHH-HHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEECcchhcCChH-HHHHHHHHHHHhcCCCCEEEEEec
Confidence            9999999998632 223499999999999999999963

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.63  E-value=1.6e-16  Score=147.82  Aligned_cols=95  Identities=13%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+|+.|++.+.++.-+...+..++.+ +++ ++||+|+|..+|||.   
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~-~~~~~sfD~v~~~~~~h~~---  112 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDT-GLPPASVDVAIAAQAMHWF---  112 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCC-CCCSSCEEEEEECSCCTTC---
T ss_pred             CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhh-cccCCcccEEEEeeehhHh---
Confidence            36899999999999999998863   6899999999998876654344444445665 466 999999999999764   


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       +.+.++.|+.|||||||.|++.+
T Consensus       113 -~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          113 -DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -hHHHHHHHHHHHcCCCCEEEEEE
Confidence             46899999999999999998865

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.63  E-value=3.8e-16  Score=145.37  Aligned_cols=103  Identities=7%  Similarity=0.083  Sum_probs=79.1

Q ss_pred             CceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|+++. .....|+++|.|+.|++.|+++    +....+.-.+.++..+| ..||+|+++.+++
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~  150 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ  150 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence            4799999999999999998752 1224799999999999998876    32222222233444556 7899999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+. ..+...+|.|++|+|||||.|+++|.
T Consensus       151 ~~~-~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          151 FLE-PSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence            875 23456899999999999999999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.62  E-value=1.8e-15  Score=130.66  Aligned_cols=123  Identities=14%  Similarity=0.201  Sum_probs=90.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|.++..|++.+.   +|+++|.++.+++.+.++    ++  +.........++. +++||+|++
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~  103 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILS  103 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEE
Confidence            3434457999999999999999998863   799999999999987654    32  2222222233333 789999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh--------------hhHHHHHHHHhcccceEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~--------------~~~~~i~~~~~~l~W~~~~~  305 (334)
                      +.+|+|+. ..+...++.++.|+|||||.+++.+..              -..+.+++++..  |++...
T Consensus       104 ~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~  170 (199)
T 2xvm_A          104 TVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY  170 (199)
T ss_dssp             ESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred             cchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence            99999875 346889999999999999998876421              023456677666  776644

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.62  E-value=1.2e-15  Score=134.59  Aligned_cols=105  Identities=18%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCCCccceEEech
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      +......+|||+|||+|.++..|++.+   .+|+++|+++.+++.+.++..    +.......+.++ .+++||+|+|+.
T Consensus        47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  122 (216)
T 3ofk_A           47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE  122 (216)
T ss_dssp             TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred             cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc
Confidence            445556899999999999999999875   589999999999999887632    222222223333 349999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+|+.+...+..+|.++.|+|||||.+++.+.
T Consensus       123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            999987655567889999999999999999764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.62  E-value=3.1e-16  Score=139.32  Aligned_cols=120  Identities=8%  Similarity=0.054  Sum_probs=85.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c-----------------cchhhhhcccCCCCC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L-----------------IGIYHDWCEAFSTYP  241 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l-----------------i~~~~d~~e~l~~yp  241 (334)
                      ...+|||+|||+|.++..|++++.   +|+++|+|+.|++.++++. .                 +.........+++.+
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            457999999999999999998863   7999999999999988762 1                 111221122232222


Q ss_pred             -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEE-EE-eCh----------hhHHHHHHHHhcccceEEE
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII-IR-DEV----------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~li-i~-D~~----------~~~~~i~~~~~~l~W~~~~  304 (334)
                       ++||+|+++.+|+|+. ..+...++.|+.|+|||||.++ +. +..          -..+.+..++.. .|++..
T Consensus        99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~  172 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK  172 (203)
T ss_dssp             HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred             CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence             6899999999998875 3446689999999999999833 32 211          024667777776 777654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.61  E-value=1.2e-15  Score=135.57  Aligned_cols=98  Identities=18%  Similarity=0.229  Sum_probs=79.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCCCCCccceEEechhhcccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~  257 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|.|+.+++.+.++..  +.......+.+ +.+++||+|+|.++|+|+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~  117 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID  117 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence            346899999999999999998764   68999999999999988742  22233333343 3349999999999999985


Q ss_pred             CcCCHHHHHHHHH-HhhcCCeEEEEEeC
Q 019879          258 DKCNIEDILLEMD-RILRPEGAIIIRDE  284 (334)
Q Consensus       258 ~~c~~~~~L~Em~-RVLRPGG~lii~D~  284 (334)
                         +...+|.|+. |+|||||.+++.+.
T Consensus       118 ---~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          118 ---DPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ---SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ---CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence               4689999999 99999999999874

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.61  E-value=5.5e-15  Score=134.52  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEEech-hhccccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHG-LFSLYKD  258 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVha~~-vfs~~~~  258 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+|+.|++.+.++.. +.......+.+ +++++||+|+|+. +|+|+.+
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDF-SLGRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTC-CCSCCEEEEEECTTGGGGSCH
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHC-CccCCcCEEEEcCchhhhcCC
Confidence            47999999999999999998863   69999999999999988732 22222222333 2369999999998 9999865


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..++..+|.++.|+|||||.|++.
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            557889999999999999999995

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.61  E-value=6.3e-15  Score=130.36  Aligned_cols=141  Identities=12%  Similarity=0.162  Sum_probs=98.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-------cchhhhhcccCCCCC-CccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-------IGIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-------i~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      ...+|||+|||+|.++..|++.+. ..+|+++|+++.+++.+.++-    +       +.......+. .+++ ++||+|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V  106 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDAA  106 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCEE
Confidence            457999999999999999998652 247999999999999887752    1       1112111122 2333 899999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh----------------------HHHHH----HHHhcccce
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE----------------------IIKVK----KIVGGMRWD  301 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~----------------------~~~i~----~~~~~l~W~  301 (334)
                      +|+.+|+|+.+ .+...+|.++.|+|||||.+++......                      .+.++    .++....++
T Consensus       107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~  185 (219)
T 3jwg_A          107 TVIEVIEHLDE-NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS  185 (219)
T ss_dssp             EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred             EEHHHHHhCCH-HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence            99999999852 3457999999999999998887654321                      12233    666667777


Q ss_pred             EEEecC---CCCCCCCceEEEEEec
Q 019879          302 TKMVDH---EDGPLVPEKILVAVKQ  323 (334)
Q Consensus       302 ~~~~~~---~~~~~~~e~~l~~~K~  323 (334)
                      +.....   ...--...++.|++|+
T Consensus       186 v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          186 VRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             EEEEecCCccccCCCCeEEEEEecc
Confidence            765421   1111246789999985

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.60  E-value=3.6e-15  Score=131.44  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++...-...|+++|.++.+++.+.++    ++  +.......+.+ +++ ++||+|+
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~  111 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-PLPDNTVDFIF  111 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-SSCSSCEEEEE
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-CCCCCCeeEEE
Confidence            3344457999999999999999987531113799999999999988765    22  22222222333 355 8999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------hhHHHHHHHHhcccceEEEecCCCCCCCCc
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPE  315 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e  315 (334)
                      ++.+++|+.   +...+|.++.|+|||||.+++.+..             -..+.+..+++...++........   ...
T Consensus       112 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~~~  185 (219)
T 3dh0_A          112 MAFTFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG---KYC  185 (219)
T ss_dssp             EESCGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET---TTE
T ss_pred             eehhhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC---Cce
Confidence            999999974   5789999999999999999998632             024677888888888865432221   245


Q ss_pred             eEEEEEec
Q 019879          316 KILVAVKQ  323 (334)
Q Consensus       316 ~~l~~~K~  323 (334)
                      .+++++|+
T Consensus       186 ~~~~~~k~  193 (219)
T 3dh0_A          186 FGVYAMIV  193 (219)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            67777775

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.60  E-value=4e-15  Score=130.90  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC  260 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c  260 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+++.+++.+.++.-+.......+.++ .+++||+|+|+.+|+|+. ..
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-~~  118 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP-RD  118 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSC-HH
T ss_pred             CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcC-HH
Confidence            47999999999999999999863   79999999999999888721222222223444 449999999999999975 34


Q ss_pred             CHHHHHHHHHHhhcCCeEEEEEeChh---------------hHHHHHHHHhccc-ceEE
Q 019879          261 NIEDILLEMDRILRPEGAIIIRDEVD---------------EIIKVKKIVGGMR-WDTK  303 (334)
Q Consensus       261 ~~~~~L~Em~RVLRPGG~lii~D~~~---------------~~~~i~~~~~~l~-W~~~  303 (334)
                      ++..+|.++.|+|||||.+++.....               ..+.+.+++.... +++.
T Consensus       119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~  177 (211)
T 3e23_A          119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASV  177 (211)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEE
Confidence            67899999999999999999984321               3466777777776 7654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.59  E-value=5.4e-15  Score=133.60  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=84.9

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC-CccceE
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      +...+......+|||+|||+|.++..|++.+..  +|+++|+++.+++.+.++..   +.......+.+ +++ ++||+|
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v  112 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDI-AIEPDAYNVV  112 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGC-CCCTTCEEEE
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhC-CCCCCCeEEE
Confidence            444455556689999999999999999998642  79999999999999888742   22222223344 455 999999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+.+|+|+.   ++..+|.++.|+|||||.+++...
T Consensus       113 ~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          113 LSSLALHYIA---SFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             EEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEchhhhhhh---hHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999999974   578999999999999999999854

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.59  E-value=7.1e-15  Score=124.89  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=98.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ....+|||+|||+|.++..|++.+   .+|+++|.++.+++.+.++.- +....   .+ .+++ ++||+|+++.+++|+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~---~d-~~~~~~~~D~v~~~~~l~~~   88 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLS---DP-KEIPDNSVDFILFANSFHDM   88 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEES---SG-GGSCTTCEEEEEEESCSTTC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEe---CC-CCCCCCceEEEEEccchhcc
Confidence            345799999999999999999875   389999999999999888721 11221   22 3456 899999999999987


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeChh-------------hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDEVD-------------EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-------------~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      .   +...++.++.|+|||||.+++.+...             ..+.+++++.  .|+........   ...-.+++.|+
T Consensus        89 ~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~---~~~~~l~~~~~  160 (170)
T 3i9f_A           89 D---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT---PYHFGLVLKRK  160 (170)
T ss_dssp             S---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS---TTEEEEEEEEC
T ss_pred             c---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC---CceEEEEEecC
Confidence            4   57899999999999999999986321             2356677766  77665433221   24567777775


Q ss_pred             cccc
Q 019879          324 YWVA  327 (334)
Q Consensus       324 ~w~~  327 (334)
                      -=++
T Consensus       161 ~~~~  164 (170)
T 3i9f_A          161 TSEG  164 (170)
T ss_dssp             CCCS
T ss_pred             CCCc
Confidence            4443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.59  E-value=1.2e-14  Score=129.30  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEech-hh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHG-LF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~~-vf  253 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|.++.|++.+.++.    + +.......+.+ +++++||+|+++. +|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~l  112 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTTGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC-CccCCceEEEEcCccc
Confidence            457999999999999999998763   6999999999999887652    1 22222222233 3458999999998 99


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +|+.+..++..+|.++.|+|||||.+++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99865456889999999999999999984

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.59  E-value=2.3e-15  Score=135.39  Aligned_cols=129  Identities=17%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-Cccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDl  246 (334)
                      ++..+......+|||+|||+|.++..|++.+.  ..|+++|.++.+++.+.++..    +.......+.+ +++ ++||+
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~  161 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYDL  161 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCCSSCEEE
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-CCCCCCeEE
Confidence            44444444568999999999999999988652  469999999999999887631    22222223334 455 89999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------------hhHHHHHHHHhcccceEEE
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~~~~~l~W~~~~  304 (334)
                      |+|+.+|+|+.+ .++..+|.++.|+|||||.+++.+..                ...+.+.+++....+++..
T Consensus       162 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  234 (254)
T 1xtp_A          162 IVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             EEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEE
Confidence            999999999853 45789999999999999999998741                1235677777777776653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.59  E-value=2.7e-15  Score=131.32  Aligned_cols=99  Identities=13%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc--chhhhhcccCCCCC-CccceEEechhhccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI--GIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli--~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ...+|||+|||+|.++..|++.+   .+|+++|+++.+++.+.+++..  .......+.+  ++ ++||+|+|+.+|+|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~  120 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHV  120 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGS
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcC
Confidence            34699999999999999999875   3799999999999999886632  1222212222  45 999999999999998


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+ .....+|.++.|+|||||.+++.+.
T Consensus       121 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          121 PD-DRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             CH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            63 2358999999999999999999864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.59  E-value=8e-15  Score=127.88  Aligned_cols=96  Identities=19%  Similarity=0.278  Sum_probs=77.4

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEechhh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      .+|||+|||+|.++..|++..  ..+|+++|.++.+++.+.++    ++   +.......+.+ +++ ++||+|+++.++
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l  121 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-PIEDNYADLIVSRGSV  121 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-SSCTTCEEEEEEESCG
T ss_pred             CEEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-CCCcccccEEEECchH
Confidence            499999999999999998862  36899999999999988776    32   22222223333 355 999999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+.   ++..+|.++.|+|||||.+++.+
T Consensus       122 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          122 FFWE---DVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence            9974   57899999999999999999986

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.59  E-value=2.3e-15  Score=135.52  Aligned_cols=98  Identities=10%  Similarity=0.180  Sum_probs=79.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-CCCCC-CccceEEechhhccccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYP-RTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l~~yp-~sFDlVha~~vfs~~~~  258 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+|+.+++.+.++  +.......+. +.+++ ++||+|+|+.+|+|+. 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~-  115 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD-  115 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC-
Confidence            47999999999999999998764   589999999999998887  2222211222 22566 9999999999999986 


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ..++..+|.++.|+|||||.+++.+.
T Consensus       116 ~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          116 PERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             GGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            34678999999999999999999864

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.58  E-value=3.4e-15  Score=134.67  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++..  ..+|+++|.|+.|++.+.++    |+   +.......+.+++ +++||+|+
T Consensus        32 ~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~  108 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAA  108 (256)
T ss_dssp             TCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEE
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEE
Confidence            333445799999999999999998752  13689999999999987665    33   2222222333433 79999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |..+++|+.   ++..+|.|+.|+|||||.+++.+.
T Consensus       109 ~~~~~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          109 CVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             ECCChHhcC---CHHHHHHHHHHHcCCCeEEEEecC
Confidence            999998875   468999999999999999999863

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.58  E-value=6.2e-15  Score=132.99  Aligned_cols=102  Identities=19%  Similarity=0.357  Sum_probs=81.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++.+.   +|+++|.++.|++.+.++    |+  +.......+.+ +++ ++||+|+
T Consensus        17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~   92 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIIT   92 (239)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEE
T ss_pred             hCcCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-CCCCCcEEEEE
Confidence            4444568999999999999999998763   799999999999987664    32  22223233444 455 8999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+.+++|+.   ++..+|.|+.|+|||||.+++.+.
T Consensus        93 ~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           93 CRYAAHHFS---DVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             EESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999999875   578999999999999999999863

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.58  E-value=4.2e-15  Score=133.97  Aligned_cols=106  Identities=18%  Similarity=0.237  Sum_probs=83.0

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-Cccce
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDl  246 (334)
                      +..+......+|||+|||+|.++..|++. +   ..|+++|+|+.+++.+.++..    +.......+.+ +++ ++||+
T Consensus        48 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~  123 (266)
T 3ujc_A           48 LSDIELNENSKVLDIGSGLGGGCMYINEKYG---AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFPENNFDL  123 (266)
T ss_dssp             TTTCCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCCTTCEEE
T ss_pred             HHhcCCCCCCEEEEECCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCCCCcEEE
Confidence            33344445679999999999999999886 4   479999999999999988742    22222222333 465 99999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+++.+|+|+. ..+...+|.++.|+|||||.+++.+
T Consensus       124 v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          124 IYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            99999999983 2467899999999999999999987

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.57  E-value=7.5e-15  Score=135.36  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..|++.+   ..|+++|+++.+++.+.++    |+   +.......+.+++++ ++||+|+|+.+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            4799999999999999999986   3799999999999988765    32   222333334455455 99999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|+.   ++..+|.|+.|+|||||.+++.+.
T Consensus       146 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          146 LEWVA---DPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GGGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99975   468999999999999999999874

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.57  E-value=9.4e-15  Score=136.20  Aligned_cols=110  Identities=12%  Similarity=0.160  Sum_probs=83.3

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDl  246 (334)
                      ++..+......+|||+|||+|.++..|++. +   .+|+++|+|+.+++.+.++    |+.....-.+.++..++++||+
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~  140 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR  140 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSE
T ss_pred             HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccE
Confidence            444444445679999999999999999886 6   4699999999999988766    3321111111222223799999


Q ss_pred             EEechhhccccCc------CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~------c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++..+|+|+.+.      .+...+|.++.|+|||||.+++.+.
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            9999999998653      4568999999999999999999874

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.57  E-value=3.5e-15  Score=145.48  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=106.1

Q ss_pred             cchhhhhhHHHHHHHHH-HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh---
Q 019879          155 YQEDSNKWKKHVNAYKK-INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY---  230 (334)
Q Consensus       155 f~~d~~~W~~~v~~y~~-ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~---  230 (334)
                      +...+..|......+.. ++..+......+|||+|||+|.++..|++.+.   +|+++|.|++|++.+.++++....   
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~  157 (416)
T 4e2x_A           81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFF  157 (416)
T ss_dssp             CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeee
Confidence            34455667776665543 44444444567999999999999999999874   799999999999999998753221   


Q ss_pred             -hhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--------------------hH
Q 019879          231 -HDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--------------------EI  288 (334)
Q Consensus       231 -~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--------------------~~  288 (334)
                       .+..+.+ +++ ++||+|+++++|+|+.   ++..+|.|+.|+|||||.+++.+...                    ..
T Consensus       158 ~~~~~~~l-~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~  233 (416)
T 4e2x_A          158 EKATADDV-RRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSA  233 (416)
T ss_dssp             SHHHHHHH-HHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCH
T ss_pred             chhhHhhc-ccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCH
Confidence             2222333 355 9999999999999985   58999999999999999999985420                    12


Q ss_pred             HHHHHHHhcccceEE
Q 019879          289 IKVKKIVGGMRWDTK  303 (334)
Q Consensus       289 ~~i~~~~~~l~W~~~  303 (334)
                      +.++.++....+++.
T Consensus       234 ~~l~~ll~~aGf~~~  248 (416)
T 4e2x_A          234 TSVQGMAQRCGFELV  248 (416)
T ss_dssp             HHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHcCCEEE
Confidence            467777777777765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=1.3e-14  Score=133.56  Aligned_cols=109  Identities=15%  Similarity=0.192  Sum_probs=81.4

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDl  246 (334)
                      ++..+......+|||+|||+|.++..|++ .+.   +|+++|+|+.+++.+.++    |+.......+.++..+|++||+
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~  132 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDR  132 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeE
Confidence            34444444567999999999999999985 453   799999999999988775    3211111111122234489999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++..+|+|+.. .+...+|.++.|+|||||.+++.+.
T Consensus       133 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          133 IVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             EEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999999852 4688999999999999999999874

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.57  E-value=1.7e-15  Score=139.75  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccc------hhhhhcccCC--CCC-Cccce
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG------IYHDWCEAFS--TYP-RTYDL  246 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~------~~~d~~e~l~--~yp-~sFDl  246 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|+|+.|++.+.++.    ...      ........++  .++ ++||+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            457999999999999999999874   7999999999999887642    100      1111111121  044 89999


Q ss_pred             EEec-hhhccccC----cCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          247 IHAH-GLFSLYKD----KCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       247 Vha~-~vfs~~~~----~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      |+|. .+|+|+.+    ..+...+|.++.|+|||||++++....
T Consensus       134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9998 89999875    344789999999999999999998754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=8.7e-15  Score=134.74  Aligned_cols=102  Identities=15%  Similarity=0.192  Sum_probs=80.9

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccchhhhhcccCCCCCCccceEEechhhc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      +......+|||+|||+|.++..|++.+   ..|+++|.|+.|++.+.++. -+.......+.+ +++++||+|+++.+|+
T Consensus        53 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~  128 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNF-RVDKPLDAVFSNAMLH  128 (279)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTC-CCSSCEEEEEEESCGG
T ss_pred             hCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhC-CcCCCcCEEEEcchhh
Confidence            344456799999999999999999865   47999999999999988763 122222223344 3579999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+.   ++..+|.|+.|+|||||.+++...
T Consensus       129 ~~~---d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          129 WVK---EPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCc---CHHHHHHHHHHhcCCCcEEEEEec
Confidence            875   578999999999999999999764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.56  E-value=2.1e-14  Score=126.81  Aligned_cols=100  Identities=14%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-------cchhhhhcccCCCCC-CccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-------IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-------i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      ..+|||+|||+|.++..|++.+   .+|+++|+++.+++.+.++.    +       +.......+.+ +++ ++||+|+
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~  106 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFAV  106 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEEE
Confidence            4799999999999999999986   37999999999999888752    2       11122222233 354 8999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++.+++|+.+......+|.++.|+|||||.+++.+.
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            999999987544455999999999999999999863

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.56  E-value=2e-14  Score=123.87  Aligned_cols=139  Identities=16%  Similarity=0.121  Sum_probs=89.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEec-hh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAH-GL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~-~v  252 (334)
                      ..+|||+|||+|.++..|++.+   ..|+++|.|+.|++.+.++    |+  +...++..+.++.++ ++||+|+++ ..
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            4799999999999999999874   4799999999999988765    33  223333334443344 899999887 22


Q ss_pred             hccc-----cCcCCHHHHHHHHHHhhcCCeEEEEEeCh------hhHHHHHHHHhcc---cceEEEecCCCCCCCCceEE
Q 019879          253 FSLY-----KDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPEKIL  318 (334)
Q Consensus       253 fs~~-----~~~c~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~~~~~l---~W~~~~~~~~~~~~~~e~~l  318 (334)
                      +++.     ....+...+|.++.|+|||||.+++....      +....+.+.+..+   .|.+..+...+.......++
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  179 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV  179 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence            2220     01123457899999999999999997542      1233445554443   47776555444333344555


Q ss_pred             EEEe
Q 019879          319 VAVK  322 (334)
Q Consensus       319 ~~~K  322 (334)
                      +..|
T Consensus       180 ~i~~  183 (185)
T 3mti_A          180 MLEK  183 (185)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.55  E-value=1.2e-14  Score=134.52  Aligned_cols=101  Identities=23%  Similarity=0.271  Sum_probs=79.8

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      ......+|||+|||+|.++..|++. +   .+|+++|+++.++..+.++    |+   +.......+.+ +++ ++||+|
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEE
Confidence            3345579999999999999999886 5   3799999999999987765    33   22222222333 455 899999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++..+++|+.+   ...+|.|+.|+|||||.|++.+.
T Consensus       155 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          155 WSQDAFLHSPD---KLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EecchhhhcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence            99999999864   78999999999999999999873

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=8.4e-15  Score=134.04  Aligned_cols=101  Identities=20%  Similarity=0.318  Sum_probs=80.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      +......+|||+|||+|.++..|++.+   .+|+++|+|+.|++.+.++..+......++.+ +++ ++||+|+|+++++
T Consensus        30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           30 LNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENL-ALPDKSVDGVISILAIH  105 (261)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCTTEEEECCCTTSC-CSCTTCBSEEEEESCGG
T ss_pred             hCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhccCCEEEECchhhC-CCCCCCEeEEEEcchHh
Confidence            434456899999999999999999866   47999999999988776664333333334454 465 9999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+.   ++..+|.|+.|+|| ||++++.+.
T Consensus       106 ~~~---~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          106 HFS---HLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             GCS---SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             hcc---CHHHHHHHHHHHhC-CcEEEEEEc
Confidence            974   57899999999999 998888753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.55  E-value=8.5e-15  Score=130.20  Aligned_cols=119  Identities=10%  Similarity=0.143  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCC
Q 019879          160 NKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFS  238 (334)
Q Consensus       160 ~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~  238 (334)
                      ..|......+..++.... ....+|||+|||+|.++..|++.+.   +|+++|.|+.|++.+.++.. +.......+.++
T Consensus        21 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~   96 (239)
T 3bxo_A           21 KDYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFR   96 (239)
T ss_dssp             CCHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc
Confidence            344444444444443222 3457999999999999999988753   79999999999999887731 222222222332


Q ss_pred             CCCCccceEEec-hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          239 TYPRTYDLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       239 ~yp~sFDlVha~-~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       ++++||+|+|. .+|+|+.+..++..+|.++.|+|||||.+++.+
T Consensus        97 -~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           97 -LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             -CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             -cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence             36899999964 599998655567899999999999999999985

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=1.1e-14  Score=131.22  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=82.5

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEE
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      ++..+......+|||+|||+|.++..|++.  +   .+|+++|.++.|++.+.++.. +.......+.++ .+++||+|+
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~  100 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV---NVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY  100 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCT---TSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence            444454455689999999999999999876  4   368999999999999887731 222222233443 348999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++.+|+|+.   +...+|.++.|+|||||.+++.+.
T Consensus       101 ~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          101 ANAVFQWVP---DHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EESCGGGST---THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EeCchhhCC---CHHHHHHHHHHhcCCCeEEEEEeC
Confidence            999999874   578999999999999999999864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.55  E-value=2.4e-14  Score=125.73  Aligned_cols=97  Identities=23%  Similarity=0.411  Sum_probs=77.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-ccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ...+|||+|||+|.++..|   +.  .+|+++|.++.|++.+.++. -+.......+.+ +++ ++||+|+++.+++|+.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~  109 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL-PFPGESFDVVLLFTTLEFVE  109 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC-CSCSSCEEEEEEESCTTTCS
T ss_pred             CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC-CCCCCcEEEEEEcChhhhcC
Confidence            5679999999999999888   32  26899999999999988873 122222223334 455 8999999999999975


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                         ++..+|.|+.|+|||||.+++.+..
T Consensus       110 ---~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          110 ---DVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             ---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---CHHHHHHHHHHHcCCCCEEEEEecC
Confidence               5789999999999999999998753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.55  E-value=2.1e-14  Score=134.39  Aligned_cols=141  Identities=14%  Similarity=0.109  Sum_probs=99.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c---cchhhhhcccCCCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L---IGIYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l---i~~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|+.......+|+++|.++.+++.+.++.    +   +.........+ +++++||+|+++.+
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~  196 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-DTREGYDLLTSNGL  196 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-CCCSCEEEEECCSS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-CccCCeEEEEECCh
Confidence            3578999999999999998522111247999999999999887652    2   22222223333 35599999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh---------------------------------------hhHHHHHH
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------------------------------DEIIKVKK  293 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~---------------------------------------~~~~~i~~  293 (334)
                      ++|+.+......++.++.|+|||||.+++.+..                                       ...+.+.+
T Consensus       197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (305)
T 3ocj_A          197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA  276 (305)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence            999865544556899999999999999998721                                       12456777


Q ss_pred             HHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          294 IVGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       294 ~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      +++.-.++........  ...-..++++|+
T Consensus       277 ~l~~aGF~~v~~~~~~--~~~~~~v~a~Kp  304 (305)
T 3ocj_A          277 QLEEAGFTDLRFEDDR--ARLFPTVIARKP  304 (305)
T ss_dssp             HHHHTTCEEEEEECCT--TSSSCEEEEECC
T ss_pred             HHHHCCCEEEEEEccc--CceeeEEEEecC
Confidence            7888888775443221  123457888885

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=6.7e-14  Score=125.24  Aligned_cols=119  Identities=14%  Similarity=0.099  Sum_probs=90.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-------cchhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-------i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..|++.+   ..|+++|+++.+++.+.++.-       +.........+ +.+.+||+|+++.+|
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l  142 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW-RPTELFDLIFDYVFF  142 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC-CCSSCEEEEEEESST
T ss_pred             CCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC-CCCCCeeEEEEChhh
Confidence            3599999999999999998865   479999999999998877631       11121111222 223799999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------hhHHHHHHHHhcccceEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~~~~~l~W~~~~  304 (334)
                      +|+. ..+...+|.++.|+|||||.|++.+..           -..+.+..++....|++..
T Consensus       143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          143 CAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             TTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred             hcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence            9975 456889999999999999999987532           1246788888888888753

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.54  E-value=1.7e-14  Score=130.08  Aligned_cols=96  Identities=19%  Similarity=0.285  Sum_probs=77.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c---cchhhhhcccCCCCC-CccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L---IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l---i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|++.+   .+|+++|.|+.|++.+.++-  .   +.......+.+ +++ ++||+|+++.+|
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-PLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-CSCTTCEEEEEEESCG
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-CCCCCCeeEEEECCch
Confidence            45799999999999999999875   47999999999999988762  1   22222223344 355 899999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +|+.   +...++.|+.|+|||||.+++.
T Consensus       115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          115 HLVP---DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence            9875   4789999999999999999986

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.54  E-value=2.6e-14  Score=127.35  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=82.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC-CccceEEech
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      +......+|||+|||+|.++..|++.+.  .+|+++|.++.+++.+.++..   +.......+.+ +++ ++||+|+++.
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~  115 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-HLPQDSFDLAYSSL  115 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-CCCTTCEEEEEEES
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-cCCCCCceEEEEec
Confidence            4444568999999999999999998864  279999999999999988742   22222222334 355 8999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++|+.   +...+|.++.|+|||||.+++.+.
T Consensus       116 ~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          116 ALHYVE---DVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence            999874   578999999999999999999874

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.54  E-value=1.3e-14  Score=129.52  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+++.+++.+.++..   +.......+.+ +++ ++||+|++..+|+|+
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-PFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-SSCTTCEEEEEEESCTTSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-CCCCCCccEEEEcChHhhc
Confidence            47999999999999999999864   69999999999999988742   12222222334 355 999999999999997


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .   +...+|.++.|+|||||.+++.+
T Consensus       130 ~---~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          130 E---EPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c---CHHHHHHHHHHHhCCCeEEEEEE
Confidence            4   57899999999999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=2.8e-14  Score=130.30  Aligned_cols=101  Identities=23%  Similarity=0.384  Sum_probs=79.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~  258 (334)
                      ...+|||+|||+|.++..|++.+   .+|+++|+|+.|++.+.++..........+.+ +++ ++||+|++..++.|+..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~~~~~~~  129 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-PFPSGAFEAVLALGDVLSYVE  129 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSCEEECCTTSC-CSCTTCEEEEEECSSHHHHCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCCCEEECcHHHC-CCCCCCEEEEEEcchhhhccc
Confidence            45799999999999999999886   37999999999999998875311222222333 355 89999999887776532


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                        ++..+|.|+.|+|||||.+++.....
T Consensus       130 --~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          130 --NKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             --CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             --cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence              38899999999999999999987543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.54  E-value=2.4e-14  Score=130.75  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=79.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ....+|||+|||+|.++..|++.+.  ..|+++|+|+.+++.+.++    |+   +.......+.+ +++ ++||+|+|+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~i~~~  121 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-PFRNEELDLIWSE  121 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-CCCCCCEEEEEEc
Confidence            3458999999999999999998742  3799999999999988765    33   22222223344 355 899999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+++|+    ++..+|.++.|+|||||.+++.+.
T Consensus       122 ~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          122 GAIYNI----GFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             SCGGGT----CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCceec----CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999987    478999999999999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.54  E-value=2.4e-14  Score=127.56  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCCCccceEEechhhc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ....+|||+|||+|.++..|++... ..+|+++|.++.+++.+.++--    +.......+.+ +++++||+|+++.+|+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l~  120 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-DFEEKYDMVVSALSIH  120 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-CCCSCEEEEEEESCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-CCCCCceEEEEeCccc
Confidence            3458999999999999999988621 1479999999999999887631    11222222222 3348999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+.+ .+...+|.|+.|+|||||.+++.+
T Consensus       121 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          121 HLED-EDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9853 233469999999999999999987

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.54  E-value=1.2e-14  Score=128.67  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccc----hhhhhcccC--CCCC-CccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG----IYHDWCEAF--STYP-RTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~----~~~d~~e~l--~~yp-~sFDlVh  248 (334)
                      ...+|||+|||+|.++..|++.+. ..+|+++|+++.+++.+.++-    +..    ...-.+.++  .+++ ++||+|+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            457999999999999999998642 137999999999999887761    110    111111222  2333 7999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      |+.+|+|+. ..+...+|.++.|+|||||.+++.+..
T Consensus       108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~  143 (217)
T 3jwh_A          108 VIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPNI  143 (217)
T ss_dssp             EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred             eHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence            999999985 334679999999999999988887654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.53  E-value=6.9e-15  Score=139.53  Aligned_cols=104  Identities=11%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cc-----------hhhhhc------ccCC-CCC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-----------IYHDWC------EAFS-TYP  241 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~-----------~~~d~~------e~l~-~yp  241 (334)
                      ..+|||+|||+|+.+..++..+.  .+|+|+|+|+.|++.|.+|.. .+           .....+      +.++ +++
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            47899999999987766665543  379999999999999887621 00           001111      2221 355


Q ss_pred             -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                       ++||+|.|..++||+.+..+...+|.++.|+|||||.|++++...
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence             899999999999876444467899999999999999999988754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.53  E-value=1.6e-14  Score=131.58  Aligned_cols=106  Identities=22%  Similarity=0.315  Sum_probs=81.1

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-Ccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTY  244 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sF  244 (334)
                      +..+......+|||+|||+|.++..|++..  ..+|+++|.|+.+++.+.++    |+   +.......+.+ +++ ++|
T Consensus        54 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f  130 (273)
T 3bus_A           54 IALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-PFEDASF  130 (273)
T ss_dssp             HHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCTTCE
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-CCCCCCc
Confidence            334444456899999999999999998742  14799999999999987765    43   22222222333 465 899


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|++..+|+|+.   +...+|.|+.|+|||||.+++.+.
T Consensus       131 D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          131 DAVWALESLHHMP---DRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             EEEEEESCTTTSS---CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cEEEEechhhhCC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999999999975   468999999999999999999873

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.53  E-value=1.1e-14  Score=134.76  Aligned_cols=120  Identities=12%  Similarity=0.047  Sum_probs=86.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-c----------------------cchhhhhccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-L----------------------IGIYHDWCEA  236 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-l----------------------i~~~~d~~e~  236 (334)
                      ...+|||+|||+|.++..|+++|.   +|+++|+|+.|++.++++. +                      +.........
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            457999999999999999999874   6999999999999987653 1                      1111111122


Q ss_pred             CCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe-C--------h---hhHHHHHHHHhcccceEE
Q 019879          237 FSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD-E--------V---DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       237 l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D-~--------~---~~~~~i~~~~~~l~W~~~  303 (334)
                      +++.+ ++||+|++..+|+|+. ..+...++.++.|+|||||.|++.. .        .   -..+.+..++.. .|++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~  222 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ  222 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence            33223 7999999999999885 4567889999999999999986432 1        0   123567777766 37665


Q ss_pred             E
Q 019879          304 M  304 (334)
Q Consensus       304 ~  304 (334)
                      .
T Consensus       223 ~  223 (252)
T 2gb4_A          223 C  223 (252)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.53  E-value=2.2e-14  Score=129.12  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.+.  ..|+++|+++.|++.+.++.-      +.......+.++ ++ ++||+|+++.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcch
Confidence            467999999999999999988752  479999999999998887642      112222223333 44 79999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh---------------hhHHHHHHHHhcccceEEEe
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~~~~~l~W~~~~~  305 (334)
                      |+|+.+ .....+|.++.|+|||||.+++.+..               ...+.+.+++....+++...
T Consensus       156 l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          156 IGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hhhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            999853 23568999999999999999997641               13567777777777776543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.53  E-value=1.6e-14  Score=134.36  Aligned_cols=100  Identities=15%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             CCceEeeecccccHHHHH----HHhC--CCcEEEEEeccCChhhHHHHHHc-----Cccch----hhhhcccCC-----C
Q 019879          180 RYRNIMDMNAGFGGFAAA----IQSS--KLWVMNVVPTLADKNTLGVIYER-----GLIGI----YHDWCEAFS-----T  239 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~----L~~~--~v~v~nVv~vD~s~~~L~~a~~R-----gli~~----~~d~~e~l~-----~  239 (334)
                      ...+|||+|||+|.++..    +..+  ++ ...++++|.|++|++.+.++     ++...    .....++++     +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            457999999999986543    3332  22 12459999999999988775     22111    011112222     2


Q ss_pred             CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          240 YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       240 yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+ ++||+|+|+++|+|+.   ++..+|.||+|+|||||.|++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            55 8999999999999975   47899999999999999999874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.53  E-value=4e-14  Score=132.65  Aligned_cols=109  Identities=15%  Similarity=0.175  Sum_probs=82.3

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDl  246 (334)
                      ++..+......+|||+|||+|.++..|++. +.   .|+++|+|+.+++.+.++    |+.......+.++..+|++||+
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~  158 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDR  158 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSE
T ss_pred             HHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCE
Confidence            344444445679999999999999999886 53   799999999999988776    3311111111222233589999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++..+|+|+.. .++..+|.++.|+|||||.+++.+.
T Consensus       159 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          159 IVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999999999852 4688999999999999999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.52  E-value=8.7e-14  Score=121.06  Aligned_cols=141  Identities=14%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             CceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCC-CCccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~y-p~sFDlVha~  250 (334)
                      ..+|||+|||+|.++..|++.  +.  ..|+++|.++.+++.+.++    |+   +.......+.++.+ +++||+|+++
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            469999999999999998875  21  3799999999999987765    32   22222223344433 4899999998


Q ss_pred             hhh-c-----cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------hhHHHHHHHHhcc---cceEEEecCCCCCCCCc
Q 019879          251 GLF-S-----LYKDKCNIEDILLEMDRILRPEGAIIIRDEV------DEIIKVKKIVGGM---RWDTKMVDHEDGPLVPE  315 (334)
Q Consensus       251 ~vf-s-----~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~~~~~l---~W~~~~~~~~~~~~~~e  315 (334)
                      ..+ .     +.....+...++.++.|+|||||.+++.+..      +....+.+.+..+   .|.+..+...+.+....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp  180 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP  180 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence            654 1     0111123457999999999999999998632      1344556665554   48887776665555566


Q ss_pred             eEEEEEec
Q 019879          316 KILVAVKQ  323 (334)
Q Consensus       316 ~~l~~~K~  323 (334)
                      .+++.+|.
T Consensus       181 ~~~~~~~~  188 (197)
T 3eey_A          181 ILVCIEKI  188 (197)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEc
Confidence            77777775

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.52  E-value=2.7e-14  Score=128.82  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..|++...  ..|+++|+++.+++.+.++    |+   +.......+.+ +++ ++||+|+|+.
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-PFQNEELDLIWSEG  122 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-SSCTTCEEEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-CCCCCCEEEEEecC
Confidence            346999999999999999998743  2799999999999987665    33   22222222344 355 9999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++|+    +...+|.++.|+|||||.+++.+.
T Consensus       123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          123 AIYNI----GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             CSCCC----CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hHhhc----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99986    478999999999999999999873

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.52  E-value=3.5e-14  Score=124.70  Aligned_cols=101  Identities=13%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ....+|||+|||+|.++..|++.+   .+++++|.++.+++.+.++...-...+..+...+++ ++||+|+++.+++|+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~  107 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF  107 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence            456899999999999999999885   479999999999998887642111122222123566 8999999999999975


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                         +...+|.++.|+|||||.+++....
T Consensus       108 ---~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          108 ---DPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             ---CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             ---CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence               4689999999999999999998643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.52  E-value=2.9e-14  Score=130.40  Aligned_cols=100  Identities=13%  Similarity=0.276  Sum_probs=78.3

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ....+|||+|||+|.++..|++... ...|+++|.++.+++.+.++    |+  +.......+.+ +++ ++||+|+++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-PFEDSSFDHIFVCF  113 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-CSCTTCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-CCCCCCeeEEEEec
Confidence            3457999999999999999988621 14799999999999988765    32  22222223344 355 9999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+|+.   ++..+|.++.|+|||||.+++.+
T Consensus       114 ~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          114 VLEHLQ---SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            999975   46799999999999999999976

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.52  E-value=2.9e-14  Score=133.63  Aligned_cols=104  Identities=8%  Similarity=-0.058  Sum_probs=79.3

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCC-----CCCccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-----YPRTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~-----yp~sFDlVha~  250 (334)
                      +......+|||+|||+|.++..|++++.   .|+++|.|+.|++.+.++.-........+.+..     .+++||+|+|+
T Consensus        41 l~l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~  117 (261)
T 3iv6_A           41 ENIVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLND  117 (261)
T ss_dssp             TTCCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred             cCCCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEh
Confidence            3444557999999999999999999874   699999999999999887421111111122221     24799999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+++|+. ..+...++.++.|+| |||.++++-.
T Consensus       118 ~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          118 RLINRFT-TEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             SCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            9999875 345778999999999 9999999853

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=122.94  Aligned_cols=122  Identities=12%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----cchhhhhcccCCCCC-CccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ...+|||+|||+|.++..|++.+..  +|+++|+++.+++.+.++..    +.........+ +++ ++||+|+++.+|+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSCSSCEEEEEEESHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCCCCcccEEEECcchh
Confidence            3478999999999999999988642  79999999999998887631    22222222233 455 8999999999987


Q ss_pred             ccc------------CcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHH--hcccceEEEe
Q 019879          255 LYK------------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIV--GGMRWDTKMV  305 (334)
Q Consensus       255 ~~~------------~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~--~~l~W~~~~~  305 (334)
                      |+.            +..+...+|.++.|+|||||.+++.+....-. ...++  ....|.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-~~~~~~~~~~~~~~~~~  182 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF-RTRHYAQAYYGWSLRHA  182 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHH-HHHHHCCGGGCEEEEEE
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHH-HHHHHhccccCcEEEEE
Confidence            753            12246799999999999999999998754211 12232  3346776543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.51  E-value=4.5e-15  Score=136.61  Aligned_cols=102  Identities=8%  Similarity=0.015  Sum_probs=75.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-----cc---------------------------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----LI---------------------------  227 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-----li---------------------------  227 (334)
                      ...+|||+|||+|.++..++..++  .+|+++|+|+.|++.+.++-     .+                           
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            457899999999988877777663  47999999999999876531     00                           


Q ss_pred             ---c-h-hhhhcccCC--CCC-CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          228 ---G-I-YHDWCEAFS--TYP-RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       228 ---~-~-~~d~~e~l~--~yp-~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                         . . ..|..+..+  +.. .+||+|+|+.+|+|+ .+..++..+|.+|.|+|||||.|++++
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence               0 0 111111111  123 799999999999985 344567899999999999999999996

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.51  E-value=3.3e-14  Score=128.24  Aligned_cols=123  Identities=10%  Similarity=0.046  Sum_probs=87.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--------------------------------
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------------------------------  226 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--------------------------------  226 (334)
                      ....+|||+|||+|.++..|+..+.  .+|+++|+|+.|++.+.++.-                                
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4458999999999999998887763  479999999999998865421                                


Q ss_pred             ---c-chhhhhcccCCC-CC---CccceEEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeCh------------
Q 019879          227 ---I-GIYHDWCEAFST-YP---RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV------------  285 (334)
Q Consensus       227 ---i-~~~~d~~e~l~~-yp---~sFDlVha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~------------  285 (334)
                         + ...........+ .+   ++||+|+|+.+|+|+.. ..++..+|.++.|+|||||.|++.+..            
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~  212 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF  212 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence               1 111111122222 23   79999999999996532 235789999999999999999998621            


Q ss_pred             --h--hHHHHHHHHhcccceEE
Q 019879          286 --D--EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       286 --~--~~~~i~~~~~~l~W~~~  303 (334)
                        .  ..+.+.+++....+.+.
T Consensus       213 ~~~~~~~~~~~~~l~~aGf~~~  234 (265)
T 2i62_A          213 SSLPLGWETVRDAVEEAGYTIE  234 (265)
T ss_dssp             ECCCCCHHHHHHHHHHTTCEEE
T ss_pred             cccccCHHHHHHHHHHCCCEEE
Confidence              0  23466777776677654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=1.9e-13  Score=116.82  Aligned_cols=120  Identities=14%  Similarity=0.112  Sum_probs=90.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEec-hhhccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAH-GLFSLY  256 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~-~vfs~~  256 (334)
                      ...+|||+|||+|.++..|++.+   .+|+++|.++.+++.+.++.. +.........+ +++ ++||+|+++ .+++|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~  121 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVD-QISETDFDLIVSAGNVMGFL  121 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTS-CCCCCCEEEEEECCCCGGGS
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccC-CCCCCceeEEEECCcHHhhc
Confidence            45799999999999999999886   379999999999998887632 22222212222 355 899999998 788876


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHHhcccceEEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~~~l~W~~~~  304 (334)
                      . ..+...+|.++.|+|||||.+++.....   ..+.+...+....+++..
T Consensus       122 ~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          122 A-EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             C-HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred             C-hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence            3 2356899999999999999999976543   356677777777777653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=121.59  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=102.1

Q ss_pred             cccchhhhhhHHHHHHHHH------------HHhhcC-CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH
Q 019879          153 ESYQEDSNKWKKHVNAYKK------------INRLLD-SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG  219 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~------------ll~~l~-~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~  219 (334)
                      +.|......|......|..            ++..+. .....+|||+|||+|.++..|.      .+|+++|.++.   
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---   97 (215)
T 2zfu_A           27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---   97 (215)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---
T ss_pred             HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---
Confidence            4566666666655554432            222222 2345799999999999998884      35899999865   


Q ss_pred             HHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHH
Q 019879          220 VIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIV  295 (334)
Q Consensus       220 ~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~  295 (334)
                           . +.......+.+ +++ ++||+|+++.++++    .+...+|.++.|+|||||.+++.+...   ..+.+..++
T Consensus        98 -----~-~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l  166 (215)
T 2zfu_A           98 -----D-PRVTVCDMAQV-PLEDESVDVAVFCLSLMG----TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV  166 (215)
T ss_dssp             -----S-TTEEESCTTSC-SCCTTCEEEEEEESCCCS----SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred             -----C-ceEEEeccccC-CCCCCCEeEEEEehhccc----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence                 1 11222222333 455 89999999999853    467899999999999999999998654   456777888


Q ss_pred             hcccceEEEecCCCCCCCCceEEEEEec
Q 019879          296 GGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       296 ~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      ....+++...+...+   .-.+++++|.
T Consensus       167 ~~~Gf~~~~~~~~~~---~~~~~~~~k~  191 (215)
T 2zfu_A          167 TKLGFKIVSKDLTNS---HFFLFDFQKT  191 (215)
T ss_dssp             HHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred             HHCCCEEEEEecCCC---eEEEEEEEec
Confidence            888887765443322   3467888886

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.8e-14  Score=131.21  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=75.1

Q ss_pred             CCCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHc-----Cc---cchhhhhcccCCCCC------C
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYER-----GL---IGIYHDWCEAFSTYP------R  242 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~R-----gl---i~~~~d~~e~l~~yp------~  242 (334)
                      ....+|||+|||+|.++..|++  .+.  .+|+++|+|+.+++.+.++     +.   +...+...+.++.-+      +
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence            3568999999999999999995  222  4799999999999988775     22   222222223333222      6


Q ss_pred             ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +||+|+|+.+++|+    ++..+|.++.|+|||||.|++
T Consensus       113 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence            99999999999987    589999999999999999998

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.50  E-value=5.3e-14  Score=122.84  Aligned_cols=99  Identities=13%  Similarity=0.155  Sum_probs=75.5

Q ss_pred             CceEeeecccccHH-HHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGF-AAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~f-aa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.+ +..+...+   .+|+++|.|+.|++.+.++    +. +.......+.+ +++ ++||+|+++.++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-PFKDESMSFVYSYGTI   99 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-CSCTTCEEEEEECSCG
T ss_pred             CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-CCCCCceeEEEEcChH
Confidence            47999999999997 45555555   3799999999999987765    21 22222222333 455 899999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +|+. ..+...++.++.|+|||||.+++.+.
T Consensus       100 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          100 FHMR-KNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9874 34678999999999999999999874

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=3e-14  Score=128.06  Aligned_cols=101  Identities=12%  Similarity=-0.031  Sum_probs=76.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCC------CCC--CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS------TYP--RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~------~yp--~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|+|+.|++.+.++.-.....-.+.++.      .++  ..||+|+++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence            347899999999999999998764   69999999999999887642111111111221      122  3499999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++|+. ..+...+|.++.|+|||||.+++.+.
T Consensus       133 ~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          133 GFHHIP-VEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             SSTTSC-GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999875 35688999999999999999998874

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.49  E-value=4e-14  Score=131.79  Aligned_cols=98  Identities=13%  Similarity=0.235  Sum_probs=75.3

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---------cchhhhhcccCCCCCCccceEEec-h
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---------IGIYHDWCEAFSTYPRTYDLIHAH-G  251 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---------i~~~~d~~e~l~~yp~sFDlVha~-~  251 (334)
                      .+|||+|||+|.++..|++.+   .+|+++|+|+.|++.+.++..         +.......+.+ +++++||+|+|+ .
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~  159 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-ALDKRFGTVVISSG  159 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-CCSCCEEEEEECHH
T ss_pred             CcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-CcCCCcCEEEECCc
Confidence            499999999999999999986   369999999999998877621         22222222333 347999999865 5


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++|+ +..+...+|.++.|+|||||.|++.+.
T Consensus       160 ~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          160 SINEL-DEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             HHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccC-CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            56554 334578999999999999999999864

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.49  E-value=1.9e-13  Score=116.20  Aligned_cols=119  Identities=14%  Similarity=0.084  Sum_probs=84.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-c-hh-hhhcccCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-G-IY-HDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~-~~-~d~~e~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.++..+++.. -...|+++|+++.+++.+.++    |+. . .+ .+..+.++..+++||+|+
T Consensus        21 ~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~   99 (178)
T 3hm2_A           21 LAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF   99 (178)
T ss_dssp             HCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEE
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEE
Confidence            344456799999999999999998862 125799999999999988765    332 1 11 122233332238999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDT  302 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~  302 (334)
                      ++.+++|       ..++.++.|+|||||.+++.+... ....+...++....++
T Consensus       100 ~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 3hm2_A          100 IGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI  147 (178)
T ss_dssp             ECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred             ECCcccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence            9988876       469999999999999999988643 4445555555555544

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.49  E-value=4e-13  Score=117.89  Aligned_cols=146  Identities=16%  Similarity=0.108  Sum_probs=96.1

Q ss_pred             CCCccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----
Q 019879          149 GVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----  224 (334)
Q Consensus       149 g~~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----  224 (334)
                      |...+.|..+...-+..+...  ++..+......+|||+|||+|.++..|++.+. ...|+++|.++.+++.+.++    
T Consensus        11 g~~d~~f~~~g~~~~~~i~~~--~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~   87 (204)
T 3e05_A           11 IDDDEFATAKKLITKQEVRAV--TLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKF   87 (204)
T ss_dssp             CCGGGSCCCTTTSCCHHHHHH--HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCcHHhccCCcCChHHHHHH--HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence            444455555433322223221  23334444568999999999999999988641 14799999999999988765    


Q ss_pred             Cc--cchhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccce
Q 019879          225 GL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD  301 (334)
Q Consensus       225 gl--i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~  301 (334)
                      |+  +...........+...+||+|+++..++      ++..++.++.|+|||||.+++.+.. +..+.+.+.++...|+
T Consensus        88 ~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A           88 VARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             TCTTEEEEECCTTTTCTTSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred             CCCcEEEEeCChhhhhhcCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence            32  1112111111112227899999986653      5789999999999999999998765 4556677777777775


Q ss_pred             EE
Q 019879          302 TK  303 (334)
Q Consensus       302 ~~  303 (334)
                      +.
T Consensus       162 ~~  163 (204)
T 3e05_A          162 VE  163 (204)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.49  E-value=8.7e-14  Score=130.61  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=81.0

Q ss_pred             HHhhcC-CCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-
Q 019879          172 INRLLD-SGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-  241 (334)
Q Consensus       172 ll~~l~-~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-  241 (334)
                      ++..+. .....+|||+|||+|.++..|+++ +   ..|+++|+++.+++.+.++    |+.   .......+.+ +++ 
T Consensus       108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  183 (312)
T 3vc1_A          108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDK  183 (312)
T ss_dssp             HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCT
T ss_pred             HHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCC
Confidence            344444 345689999999999999999886 5   4699999999999987764    332   2222222333 466 


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++||+|++..+|+|+ +   ...+|.++.|+|||||.+++.+
T Consensus       184 ~~fD~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          184 GAVTASWNNESTMYV-D---LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             TCEEEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEeEEEECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEE
Confidence            999999999999987 2   8999999999999999999986

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=1.7e-13  Score=120.76  Aligned_cols=100  Identities=16%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-----ccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-----li~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|++.+.   +|+++|+++.+++.+.++.     -+.........+ +++ ++||+|+++.+++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEESCGG
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-CCCCCcEEEEEEcCchH
Confidence            57999999999999999998864   7999999999999877652     122222212223 355 8999999998855


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +.. ..+...++.++.|+|||||.+++.+..
T Consensus       115 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          115 HFE-PLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             GCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            432 235689999999999999999998764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.48  E-value=5.3e-14  Score=129.70  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=87.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|+++.+++.+.++    |+ +.........++ ++++||+|+|+.+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~i~~~~~~~  195 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-IQENYDFIVSTVVFM  195 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-CCSCEEEEEECSSGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-ccCCccEEEEccchh
Confidence            457999999999999999999864   799999999999977665    32 122222222332 379999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh--------------hhHHHHHHHHhcccceEEEe
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~--------------~~~~~i~~~~~~l~W~~~~~  305 (334)
                      |+. ..+...++.++.|+|||||.+++....              -....+...+..  |++..+
T Consensus       196 ~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~  257 (286)
T 3m70_A          196 FLN-RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY  257 (286)
T ss_dssp             GSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred             hCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence            874 456789999999999999997775321              012456666665  776654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.48  E-value=8.8e-14  Score=128.93  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=80.1

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      .+..+|||+|||+|.++..|++.-.....|+++|+|+.++..+.++-    . +......++.+ +++++||+|+++.++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHAFL   99 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-CcCCCeeEEEECChh
Confidence            45689999999999999999886211147999999999999887651    1 22222323333 456899999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +|+.   +...+|.++.|+|||||++++.+..
T Consensus       100 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          100 LHMT---TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            9875   4689999999999999999998765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=1.2e-13  Score=124.38  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDl  246 (334)
                      ++..+......+|||+|||+|.++..|++.+.   +|+++|.|+.|++.+.++    ++ +.........+ +++++||+
T Consensus        33 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~  108 (252)
T 1wzn_A           33 IFKEDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNEFDA  108 (252)
T ss_dssp             HHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSCEEE
T ss_pred             HHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc-ccCCCccE
Confidence            33333333457999999999999999998863   799999999999988765    22 12222222233 34589999


Q ss_pred             EEech-hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHG-LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~-vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|.. +++|+ +..+...+|.++.|+|||||.+++...
T Consensus       109 v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          109 VTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcCCchhcC-CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            99863 44443 234578999999999999999998643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.47  E-value=4.8e-14  Score=128.27  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhh-hhcccCCCCC-CccceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYH-DWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~-d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ....+|||+|||+|.++.+|++..  +.+|+++|+++.|++.+.++.-     +..+. ++.+-.+.++ ++||.|+...
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence            345899999999999999998864  3579999999999999887632     11111 2222234566 8999997654


Q ss_pred             hhccc--cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          252 LFSLY--KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       252 vfs~~--~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +++..  .+..+.+.++.|+.|+|||||.|++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            33321  122357899999999999999999864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.46  E-value=1.2e-13  Score=122.92  Aligned_cols=97  Identities=13%  Similarity=0.246  Sum_probs=76.5

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEech-hhcc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHG-LFSL  255 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~~-vfs~  255 (334)
                      .+|||+|||+|.++..|++.    .+|+++|.++.+++.+.++.    . +.........+ +++++||+|++.. +++|
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL-ELPEPVDAITILCDSLNY  109 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC-CCSSCEEEEEECTTGGGG
T ss_pred             CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc-CCCCCcCEEEEeCCchhh
Confidence            79999999999999999876    37999999999999887652    1 12222212233 3458999999986 9999


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +.+..++..+|.++.|+|||||.+++..
T Consensus       110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          110 LQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            8655678899999999999999999853

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.46  E-value=2.5e-13  Score=115.93  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-hhhhhcccC-CCCC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAF-STYP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~~~d~~e~l-~~yp-~sFDlVh  248 (334)
                      +......+|||+|||+|.++..+++.+   .+|+++|.++.+++.+.++    ++.. ...-.+.++ .+++ ++||+|+
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  124 (194)
T 1dus_A           48 VVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKII  124 (194)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEE
T ss_pred             cccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEE
Confidence            443456799999999999999998873   4799999999999987765    3211 011111121 1233 7999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      ++..+++.  ..+...++.++.|+|||||.+++.+...
T Consensus       125 ~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          125 TNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             ECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            99887652  2346799999999999999999987653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.46  E-value=1.2e-13  Score=126.75  Aligned_cols=104  Identities=14%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCC-C-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTY-P-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~y-p-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++.+.  .+|+++|+++.++..+.++    ++   +......++.+ ++ + ++||+|+|.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDLGKEFDVISSQ  140 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCCSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCCCCCcCEEEEC
Confidence            347999999999999999887653  3799999999999988775    22   12222222333 34 4 899999999


Q ss_pred             hhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          251 GLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       251 ~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      .+++|. .+..+...+|.++.|+|||||.+++.....
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            999874 334467899999999999999999988653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.46  E-value=2.8e-14  Score=132.20  Aligned_cols=122  Identities=11%  Similarity=0.084  Sum_probs=82.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--------------cchhh--------------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------------IGIYH--------------  231 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--------------i~~~~--------------  231 (334)
                      ...+|||+|||+|.++..+...+.  .+|+++|+|+.|++.+.++--              +....              
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            457999999999995544443222  379999999999998766310              00000              


Q ss_pred             ---------hhcccCC----CCC-CccceEEechhhccccCc-CCHHHHHHHHHHhhcCCeEEEEEeCh-----------
Q 019879          232 ---------DWCEAFS----TYP-RTYDLIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRDEV-----------  285 (334)
Q Consensus       232 ---------d~~e~l~----~yp-~sFDlVha~~vfs~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~~-----------  285 (334)
                               |..+.++    .++ ++||+|+|+.+|+|+... .++..+|.|+.|+|||||.|++.+..           
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~  228 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  228 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence                     2222122    134 679999999999985431 25789999999999999999997411           


Q ss_pred             -----hhHHHHHHHHhcccceEE
Q 019879          286 -----DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       286 -----~~~~~i~~~~~~l~W~~~  303 (334)
                           -..+.+.+++....+++.
T Consensus       229 ~~~~~~~~~~l~~~l~~aGf~~~  251 (289)
T 2g72_A          229 LTVVPVSEEEVREALVRSGYKVR  251 (289)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEE
T ss_pred             eeeccCCHHHHHHHHHHcCCeEE
Confidence                 124566666666666543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.46  E-value=7.4e-14  Score=135.72  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc---------C-c----cchhhhhcccCC-----CC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER---------G-L----IGIYHDWCEAFS-----TY  240 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R---------g-l----i~~~~d~~e~l~-----~y  240 (334)
                      ...+|||+|||+|.++..|++.......|+++|+|+.|++.+.++         | +    +.......+.+.     ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            457999999999999998877410113799999999999998876         4 1    222222223321     56


Q ss_pred             C-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          241 P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       241 p-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      + ++||+|+++.+|+|+.   +...+|.|+.|+|||||+|++.+
T Consensus       163 ~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence            6 8999999999999875   47899999999999999999986

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.46  E-value=2.4e-13  Score=129.41  Aligned_cols=135  Identities=14%  Similarity=0.070  Sum_probs=92.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--ccchhhhhcccCC--CCC-CccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LIGIYHDWCEAFS--TYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--li~~~~d~~e~l~--~yp-~sFDlVha~~vfs  254 (334)
                      ...+|||+|||||+|+..|++.+.  ..|+++|.+++||..+.++.  ....-..-...+.  .+| .+||+|+|..+|+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI  162 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred             cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence            357999999999999999998864  36999999999998755421  1100000001111  245 5699999998887


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------------------hhHHHHHHHHhcccceEE--EecCCCC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTK--MVDHEDG  310 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~~~~~l~W~~~--~~~~~~~  310 (334)
                      ++      ..+|.|+.|+|||||.|++...+                      ..++++...+....|.+.  .+....|
T Consensus       163 sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g  236 (291)
T 3hp7_A          163 SL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQG  236 (291)
T ss_dssp             CG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCC
T ss_pred             hH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Confidence            54      57999999999999999987211                      144667777888888875  3334556


Q ss_pred             CCCCceEE-EEEe
Q 019879          311 PLVPEKIL-VAVK  322 (334)
Q Consensus       311 ~~~~e~~l-~~~K  322 (334)
                      +.+.-.|| .++|
T Consensus       237 ~~gn~e~l~~~~~  249 (291)
T 3hp7_A          237 GHGNIEFLAHLEK  249 (291)
T ss_dssp             GGGCCCEEEEEEE
T ss_pred             CCcCHHHHHHhhh
Confidence            55444444 4444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.46  E-value=2.2e-13  Score=121.09  Aligned_cols=92  Identities=17%  Similarity=0.276  Sum_probs=75.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ..+|||+|||+|.++..|...       +++|.++.+++.+.++++. ......+.+ +++ ++||+|++..+|+|+.  
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~-~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~--  116 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVF-VLKGTAENL-PLKDESFDFALMVTTICFVD--  116 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCE-EEECBTTBC-CSCTTCEEEEEEESCGGGSS--
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCE-EEEcccccC-CCCCCCeeEEEEcchHhhcc--
Confidence            579999999999999998764       8999999999999887532 222222334 355 8999999999999874  


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                       ++..+|.++.|+|||||.+++.+.
T Consensus       117 -~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A          117 -DPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CHHHHHHHHHHHcCCCcEEEEEEe
Confidence             478999999999999999999863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.45  E-value=7e-14  Score=125.86  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=74.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhcccC-CCCC-CccceEEe-ch
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEAF-STYP-RTYDLIHA-HG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~l-~~yp-~sFDlVha-~~  251 (334)
                      ...+|||+|||+|.++..|++.+.  .+|+++|.|+.|++.+.++.-     +...+...+.+ .+++ ++||+|++ .+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            357999999999999999987653  479999999999999887631     11222222222 3566 89999999 44


Q ss_pred             hhc-cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFS-LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs-~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .++ +..+..+.+.++.|+.|+|||||.|++.+.
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            431 111222356889999999999999998764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.45  E-value=2.3e-13  Score=118.65  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      +|||+|||+|.++..|++.+.   +|+++|.++.+++.+.++    ++ +.......+.+ +++ ++||+|+++  +.|+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~--~~~~  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF-DIVADAWEGIVSI--FCHL  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB-SCCTTTCSEEEEE--CCCC
T ss_pred             CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc-CCCcCCccEEEEE--hhcC
Confidence            999999999999999998863   799999999999988765    22 22222222233 355 899999995  4454


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       ...+...+|.++.|+|||||.+++.+
T Consensus       106 -~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          106 -PSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             -CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             -CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             23467899999999999999999986

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.45  E-value=7.5e-13  Score=118.79  Aligned_cols=98  Identities=15%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH----HHHHcCccchhhhhcccC---CCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEAF---STYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~----~a~~Rgli~~~~d~~e~l---~~yp~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++... ...|+++|+|+.|++    .+..+..+......+...   .+++++||+|+|+. 
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-  134 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-  134 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence            457999999999999998887521 136999999987654    344332221111111111   23458999999972 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       .   +..+...++.|+.|+|||||.|++.-
T Consensus       135 -~---~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          135 -A---QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             -C---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -c---ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence             2   12234566999999999999999973

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.44  E-value=3.7e-13  Score=117.97  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCC-CCccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-PRTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~y-p~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|.++..|++.+.  ..|+++|.++.+++.+.++    ++.. ..-.+.++..+ +++||+|+++.++++
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI  137 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH
Confidence            47999999999999999988753  3799999999999988765    3321 11112233333 499999999987765


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEEEe
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~~~  305 (334)
                            +..++.++.|+|||||.+++.+.. ...+.+...+....++....
T Consensus       138 ------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          138 ------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             ------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred             ------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence                  468999999999999999998643 34566777777777776543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.44  E-value=7.3e-14  Score=130.70  Aligned_cols=103  Identities=15%  Similarity=0.248  Sum_probs=76.2

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc--------------------------------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL--------------------------------  226 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl--------------------------------  226 (334)
                      ...+|||+|||+|.++..|++. +.  ..|+++|+++.|++.|.++--                                
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            4579999999999999999885 22  379999999999998877521                                


Q ss_pred             --------------------------------cchh-hhhccc---CCCCC-CccceEEechhhcccc---CcCCHHHHH
Q 019879          227 --------------------------------IGIY-HDWCEA---FSTYP-RTYDLIHAHGLFSLYK---DKCNIEDIL  266 (334)
Q Consensus       227 --------------------------------i~~~-~d~~e~---l~~yp-~sFDlVha~~vfs~~~---~~c~~~~~L  266 (334)
                                                      +... .|+...   +.+++ ++||+|+|..+++|+.   ...++..+|
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                            0000 111110   11234 8999999999997652   334678999


Q ss_pred             HHHHHhhcCCeEEEEEeC
Q 019879          267 LEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       267 ~Em~RVLRPGG~lii~D~  284 (334)
                      .+++|+|||||.|++...
T Consensus       204 ~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHhCCCcEEEEecC
Confidence            999999999999999754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.44  E-value=7.2e-13  Score=119.89  Aligned_cols=138  Identities=16%  Similarity=0.177  Sum_probs=92.1

Q ss_pred             CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC---CCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST---YPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~---yp~sFDlVh  248 (334)
                      ...+|||+|||+|.++..|+.  .+   ..|+++|.++.|++.+.++    |+  +..++..++.++.   .+++||+|+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence            347999999999999888874  33   4699999999999887653    43  2233333334432   248999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh---hHHHHHHHHhcccceEEEec--CCCCCCCCceEEEEEec
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD---EIIKVKKIVGGMRWDTKMVD--HEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~~~~~l~W~~~~~~--~~~~~~~~e~~l~~~K~  323 (334)
                      |..+       .++..++.++.|+|||||.+++.+...   .+..+.+.+....+......  ........-.+++.+|.
T Consensus       147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~  219 (240)
T 1xdz_A          147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI  219 (240)
T ss_dssp             EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence            9752       357899999999999999999987543   34455556666777654221  11111123456667776


Q ss_pred             cccc
Q 019879          324 YWVA  327 (334)
Q Consensus       324 ~w~~  327 (334)
                      --++
T Consensus       220 ~~~~  223 (240)
T 1xdz_A          220 KNTP  223 (240)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            4444

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.43  E-value=6.8e-13  Score=118.08  Aligned_cols=140  Identities=13%  Similarity=0.036  Sum_probs=95.6

Q ss_pred             CCceEeeeccc-ccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAG-FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG-~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ...+|||+||| +|.++..|+...  ..+|+++|+++.+++.+.++    |+ +.......+.+.+++ ++||+|+++..
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            34799999999 999999998862  24799999999999987654    32 222222122244566 89999999866


Q ss_pred             hccccCc----------------CCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHhcccceEEEecCCCCCCCC
Q 019879          253 FSLYKDK----------------CNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGGMRWDTKMVDHEDGPLVP  314 (334)
Q Consensus       253 fs~~~~~----------------c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~  314 (334)
                      +.+..+.                ..+..++.++.|+|||||.+++...  ......+.+.+....|++.......|. ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~  211 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW  211 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence            6543210                1147899999999999999998643  345677778888888887765544332 33


Q ss_pred             ceEEEEEe
Q 019879          315 EKILVAVK  322 (334)
Q Consensus       315 e~~l~~~K  322 (334)
                      -.+|..+|
T Consensus       212 ~~~l~f~~  219 (230)
T 3evz_A          212 RHSLIFFK  219 (230)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            44555554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.42  E-value=1.4e-13  Score=129.17  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=79.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-------------cchhhhhcccCC---CCC--
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------------IGIYHDWCEAFS---TYP--  241 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-------------i~~~~d~~e~l~---~yp--  241 (334)
                      ...+|||+|||+|.++..|++.+.  .+|+++|+|+.|++.+.++..             +......++.++   +++  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            457999999999999999987643  479999999999998876521             112222233333   242  


Q ss_pred             -CccceEEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          242 -RTYDLIHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       242 -~sFDlVha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                       ++||+|+|+.++++. .+..++..+|.++.|+|||||.++++....
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence             599999999999886 444457799999999999999999987654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.42  E-value=1.8e-12  Score=115.34  Aligned_cols=117  Identities=11%  Similarity=0.030  Sum_probs=82.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++.+   ..|+++|.++.+++.+.++    |+.   ...........+...+||+|+
T Consensus        51 l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~  127 (204)
T 3njr_A           51 LAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVF  127 (204)
T ss_dssp             HCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEE
T ss_pred             cCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEE
Confidence            344455799999999999999999874   4799999999999987765    332   122221222111226899999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~  303 (334)
                      +...+       +.+ ++.++.|+|||||.+++.... +....+.+.++...+++.
T Consensus       128 ~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          128 IGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             ECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred             ECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence            87532       356 999999999999999998754 455566666666556544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.41  E-value=7.7e-13  Score=126.41  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=88.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ....+|||+|||+|++++.++.+- ....|+++|.+++|++.|+++    |+ ......+.+...++ ++||+|++..+ 
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~-  197 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL-  197 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT-
T ss_pred             CCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC-
Confidence            456899999999998876654431 124799999999999988775    54 21111122222344 99999997643 


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHH----HHHHHHhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEII----KVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~----~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                           ..+.+.++.|+.|+|||||.|++++....-.    .+.. ...-.|+.....+..+. ..+.+.+++|.
T Consensus       198 -----~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~-v~N~vv~a~k~  264 (298)
T 3fpf_A          198 -----AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGK-VNNTSVLVFKC  264 (298)
T ss_dssp             -----CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTT-CCCEEEEEEEC
T ss_pred             -----ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCC-cCcEEEEEEcc
Confidence                 1357899999999999999999998543110    0000 12225666554444332 35778888774

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.41  E-value=4.9e-13  Score=116.16  Aligned_cols=141  Identities=12%  Similarity=0.087  Sum_probs=83.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cch-hhhhcccCCC---CCCccceEEe
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGI-YHDWCEAFST---YPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~-~~d~~e~l~~---yp~sFDlVha  249 (334)
                      ....+|||+|||+|.++..+++... ..+|+++|+++.++..+.++-    + +.. ..|..+.++.   ..++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            4568999999999999999988632 257999999999998876652    1 111 2222222211   1289999999


Q ss_pred             chhhcc------ccCcC-------C----------HHHHHHHHHHhhcCCeE-EEEEeChhhHHHHHHHHh--cccceEE
Q 019879          250 HGLFSL------YKDKC-------N----------IEDILLEMDRILRPEGA-IIIRDEVDEIIKVKKIVG--GMRWDTK  303 (334)
Q Consensus       250 ~~vfs~------~~~~c-------~----------~~~~L~Em~RVLRPGG~-lii~D~~~~~~~i~~~~~--~l~W~~~  303 (334)
                      +..|.+      +....       .          ...++.++.|+|||||. +++.-.....+.+..++.  ...|...
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~  187 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV  187 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence            744432      11100       0          17889999999999999 666555555667777777  6666543


Q ss_pred             -EecCCCCCCCCceEEEEEec
Q 019879          304 -MVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       304 -~~~~~~~~~~~e~~l~~~K~  323 (334)
                       .....   .+.+++++++|.
T Consensus       188 ~~~~~~---~~~~r~~~~~~~  205 (215)
T 4dzr_A          188 RKVKDL---RGIDRVIAVTRE  205 (215)
T ss_dssp             CEEECT---TSCEEEEEEEEC
T ss_pred             EEEEec---CCCEEEEEEEEc
Confidence             22212   245889998874

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.38  E-value=1.1e-12  Score=122.62  Aligned_cols=105  Identities=13%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             CCCceEeeecccc---cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhh-hhccc-----C----CCCC
Q 019879          179 GRYRNIMDMNAGF---GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYH-DWCEA-----F----STYP  241 (334)
Q Consensus       179 ~~~r~VLD~GCG~---G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~-d~~e~-----l----~~yp  241 (334)
                      ...++|||+|||+   |.++..+.+..- ...|+++|.|+.||+.++++-    .+.... |..+.     .    ..++
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence            3468999999999   988766655311 146999999999999887752    111111 11110     0    1245


Q ss_pred             -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                       .+||+|+++.+|||+.+. +...+|+|+.|+|||||+|++++..
T Consensus       155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence             689999999999998754 7899999999999999999999754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.38  E-value=1.5e-12  Score=118.58  Aligned_cols=110  Identities=11%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChh------hHHHHHHc----Cc---cchhh-h-
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKN------TLGVIYER----GL---IGIYH-D-  232 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~------~L~~a~~R----gl---i~~~~-d-  232 (334)
                      +..++..+......+|||+|||+|.++..|++. +.. ..|+++|.|+.      +++.+.++    ++   +.... | 
T Consensus        32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            344444444445689999999999999999886 221 36999999976      88877665    22   11111 1 


Q ss_pred             h-cccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          233 W-CEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       233 ~-~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      . .+. .+++ ++||+|+++.+++|+.+   ...++..+.++++|||.+++.+
T Consensus       111 ~~~~~-~~~~~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          111 LSDDL-GPIADQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TTTCC-GGGTTCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred             hhhcc-CCCCCCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence            1 112 2455 89999999999999764   4555556666666699999976

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.37  E-value=2.1e-12  Score=111.47  Aligned_cols=129  Identities=11%  Similarity=0.132  Sum_probs=90.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      ..+|||+|||+|.++..|++++    +|+++|+++.|++.  ... +.......  ..+++ ++||+|+|+..|++..+.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~~d~--~~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVRADL--LCSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEECST--TTTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEECCh--hhhcccCCCCEEEECCCCccCCcc
Confidence            4699999999999999999876    79999999999887  222 22222111  12455 899999999888754321


Q ss_pred             ------CCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEE
Q 019879          260 ------CNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV  321 (334)
Q Consensus       260 ------c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~  321 (334)
                            .+...++.++.|.| |||.+++.... ...+.+.++++...|+.........  ..|++++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~--~~e~~~~~~  160 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKI--LGETVYIIK  160 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEEC--SSSEEEEEE
T ss_pred             ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeecc--CCceEEEEE
Confidence                  12357889999999 99999998754 3567788888888888754333222  245555544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.37  E-value=3.4e-12  Score=111.55  Aligned_cols=130  Identities=8%  Similarity=0.057  Sum_probs=88.2

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..|+.. +.  ..|+++|.++.+++.+.++    ++  +...+...+.++ .+++||+|+++.+ 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc-
Confidence            469999999999999998874 21  3799999999999887664    33  222222112221 1389999998632 


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEE---ecCCCCCCCCceEEEEEec
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKM---VDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~~K~  323 (334)
                            .++..++.++.|+|||||.+++.......+.++.+..  .|+...   +...+ ......+++++|.
T Consensus       142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~-~~~~~~~~~~~k~  205 (207)
T 1jsx_A          142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPA-LDGERHLVVIKAN  205 (207)
T ss_dssp             ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC---CCEEEEEEEEEC
T ss_pred             ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCC-CCCceEEEEEEec
Confidence                  3467999999999999999999977655566666655  666542   12221 1235667777663

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.36  E-value=2.2e-12  Score=109.82  Aligned_cols=117  Identities=18%  Similarity=0.284  Sum_probs=84.1

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchh-hhhcccCCCCCCccceEE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIY-HDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~-~d~~e~l~~yp~sFDlVh  248 (334)
                      ......+|||+|||+|.++..+++..   ..|+++|.++.+++.+.++    |+   +... .+..+.++ ..++||+|+
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~  105 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-KIPDIDIAV  105 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-TSCCEEEEE
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc-cCCCCCEEE
Confidence            33445799999999999999999876   4799999999999987764    22   1111 12112121 116899999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~  303 (334)
                      ++.++++      +..++.++.|+|+|||.+++.+.. +....+...+....|++.
T Consensus       106 ~~~~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          106 VGGSGGE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             ESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             ECCchHH------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence            9876653      578999999999999999998764 355666666666656443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=3.4e-12  Score=108.10  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCC-CccceEEe
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp-~sFDlVha  249 (334)
                      .....+|||+|||+|.++..|++.+   .+|+++|.++.+++.+.++    |+  +.... |..+   +++ ++||+|++
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~  106 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFI  106 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEE
Confidence            3345799999999999999998843   4799999999999987765    32  11221 2222   345 79999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHHHHHhcccceEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~~~~~l~W~~~~~  305 (334)
                      +.+       .++..++.++.|+  |||.+++.+. .+....+.+.++...|++...
T Consensus       107 ~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          107 GGT-------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             CSC-------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCc-------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence            866       3578999999999  9999999984 445666777777777877643

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.35  E-value=5.2e-12  Score=116.33  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=93.3

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC---CCCccceEE
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST---YPRTYDLIH  248 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~---yp~sFDlVh  248 (334)
                      ....+|||+|||+|.++..|+.. +.  ..|+++|+++.++.++.++    |+  +..++...+.++.   ++++||+|+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            34679999999999988888764 22  4699999999999987654    44  2333333444443   348999999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh---hhHHHHHHHHhcccceEEEec--CCCCCCCCceEEEEEec
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---DEIIKVKKIVGGMRWDTKMVD--HEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~~~~~l~W~~~~~~--~~~~~~~~e~~l~~~K~  323 (334)
                      |..+       .++..++.++.|+|||||.+++....   +.+..+...+..+.+......  ...+....-.+++.+|.
T Consensus       157 s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~  229 (249)
T 3g89_A          157 ARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT  229 (249)
T ss_dssp             EESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             ECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence            9743       34688999999999999999987653   344455555667777654221  11121123345566665


Q ss_pred             cccc
Q 019879          324 YWVA  327 (334)
Q Consensus       324 ~w~~  327 (334)
                      -.++
T Consensus       230 ~~t~  233 (249)
T 3g89_A          230 APTP  233 (249)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            4444

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.35  E-value=9e-12  Score=114.05  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=88.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCC-CCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFS-TYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~-~yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++++..  .|+++|+++.+++.+.++    ++   +..++.....++ .++ ++||+|+++
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence            4579999999999999999987542  799999999999887664    33   222222222232 354 899999997


Q ss_pred             hhhccc-----c------------CcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879          251 GLFSLY-----K------------DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       251 ~vfs~~-----~------------~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      -.|.+.     .            ..++++.++.++.|+|||||.+++.-..+....+...+....|...
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence            444321     0            1134568999999999999999998777767777777777777764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.35  E-value=6.9e-13  Score=113.78  Aligned_cols=131  Identities=15%  Similarity=0.122  Sum_probs=86.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCC--CC-CccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFST--YP-RTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~--yp-~sFDlVha~~vf  253 (334)
                      ....+|||+|||.                 +.+|.|+.|++.+.++..  +.......+.+++  ++ ++||+|+|+.++
T Consensus        11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            3458999999995                 238999999999988731  2222222344443  35 999999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh----------hHHHHHHHHhcccceEEEecCCCCCC-----------
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKMVDHEDGPL-----------  312 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~~~~~l~W~~~~~~~~~~~~-----------  312 (334)
                      +|+.  .+...+|.|++|+|||||.|++.+...          ..+.+.+.+....+ +........+.           
T Consensus        74 ~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~  150 (176)
T 2ld4_A           74 GSTT--LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREH  150 (176)
T ss_dssp             TCCC--CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHH
T ss_pred             hhcc--cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHH
Confidence            9871  245899999999999999999975421          14555555555444 33222110000           


Q ss_pred             -------CCceEEEEEecccccCC
Q 019879          313 -------VPEKILVAVKQYWVASG  329 (334)
Q Consensus       313 -------~~e~~l~~~K~~w~~~~  329 (334)
                             ..-.+++++|+-|..++
T Consensus       151 ~g~~~~~~~~~~~~a~Kp~~~~gs  174 (176)
T 2ld4_A          151 LGHESDNLLFVQITGKKPNFEVGS  174 (176)
T ss_dssp             TCCCCSSEEEEEEEEECCCSSCCS
T ss_pred             hcccCCceEEEEEeccCCcccccC
Confidence                   11457899998887654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.35  E-value=3.1e-12  Score=114.37  Aligned_cols=121  Identities=8%  Similarity=0.056  Sum_probs=80.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..|++... ..+|+++|+|+.++..+.++    |+  +...+..+..++ .++ ++||.|+++..
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            46899999999999999987521 14799999999999987664    43  222222222232 155 89999987632


Q ss_pred             hcc-----ccCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHhcccceE
Q 019879          253 FSL-----YKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       253 fs~-----~~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~~l~W~~  302 (334)
                      ..+     ...+.....+|.++.|+|||||.|++.. .....+.+...+....|..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence            221     1111123689999999999999999976 4445555555555545544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.35  E-value=1.9e-12  Score=112.41  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=76.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CC-CCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TY-PRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~y-p~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..++..+.  ..|+++|.++.|++.+.++    ++  +...+..+..++ .+ +++||+|+++.
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            457999999999999998887764  3699999999999987764    32  222222122222 24 48999999998


Q ss_pred             hhccccCcCCHHHHHHHHHH--hhcCCeEEEEEeChh
Q 019879          252 LFSLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEVD  286 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~R--VLRPGG~lii~D~~~  286 (334)
                      .+++.  ..++..++.++.|  +|+|||.+++.....
T Consensus       122 p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNVD--SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            77653  1357899999999  999999999987543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.34  E-value=2.4e-12  Score=117.79  Aligned_cols=130  Identities=17%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-c-----hhhhhc-ccCC--CCC-CccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G-----IYHDWC-EAFS--TYP-RTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-~-----~~~d~~-e~l~--~yp-~sFDlVha  249 (334)
                      ...+|||+|||+|.|+..|++++.  ..|+++|+|++|++.+.++.-. .     ...... ++++  .++ .+||++++
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            346999999999999999999864  2799999999999987764310 0     111111 2222  133 45555543


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------------------hhHHHHHHHHhcccceEEEec-
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------------DEIIKVKKIVGGMRWDTKMVD-  306 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~~~~~l~W~~~~~~-  306 (334)
                      +     +      ..+|.|+.|+|||||.+++...+                      ...+.+.+.+....|.+...+ 
T Consensus       115 ~-----l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~  183 (232)
T 3opn_A          115 S-----L------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF  183 (232)
T ss_dssp             C-----G------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             h-----H------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence            3     2      57999999999999999987211                      134556677778888765332 


Q ss_pred             -CCCCCC-CCceEEEEEe
Q 019879          307 -HEDGPL-VPEKILVAVK  322 (334)
Q Consensus       307 -~~~~~~-~~e~~l~~~K  322 (334)
                       ...|+. +.|-++.++|
T Consensus       184 ~pi~g~~gn~e~l~~~~~  201 (232)
T 3opn_A          184 SPIKGGAGNVEFLVHLLK  201 (232)
T ss_dssp             CSSCBTTTBCCEEEEEEE
T ss_pred             ccCCCCCCCHHHHHHHhh
Confidence             333333 3456666666

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.34  E-value=5.8e-12  Score=111.64  Aligned_cols=122  Identities=13%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..|+.... ..+|+++|+++.++..+.++    |+  +..+......++ .++ ++||+|+++..
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            46899999999999999987521 14799999999999987664    33  222222222332 155 89999999854


Q ss_pred             hcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEE
Q 019879          253 FSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       253 fs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~  303 (334)
                      ..+..     .+-....++.++.|+|||||.|++.... ...+.+.+.+....|...
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~  177 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  177 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence            32111     1112368999999999999999998644 455666666666566654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.34  E-value=3.2e-12  Score=124.37  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceEEec
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      .....+|||+|||+|.++..+++.+.  ..|+++|.| +|+..+.++    |+   +...+...+.+ +++++||+|++.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Iv~~  136 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-SLPEKVDVIISE  136 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCSSCEEEEEEC
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-CcCCcceEEEEc
Confidence            34558999999999999999999864  379999999 999877654    33   22333333443 355899999997


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+.+++.....+..++.+++|+|||||.+++..
T Consensus       137 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          137 WMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             ChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            665555444568899999999999999998854

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.33  E-value=1.5e-12  Score=117.63  Aligned_cols=116  Identities=9%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CC-CCC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FS-TYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~-~yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++.... .+|+++|+++.+++.+.++    |+  +..+...+.. ++ .++ ++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            3468999999999999999875321 4799999999999877654    43  2222222222 22 155 999999987


Q ss_pred             hhhccccC-----cCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHh
Q 019879          251 GLFSLYKD-----KCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVG  296 (334)
Q Consensus       251 ~vfs~~~~-----~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~  296 (334)
                      +...+...     +-....++.++.|+|||||.|++..... +.+.+...+.
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~  164 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS  164 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence            33322111     1111369999999999999999976644 5555555543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.33  E-value=1.3e-12  Score=117.06  Aligned_cols=109  Identities=12%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchh-hhhcccCCCC-CCccceEEechhhcccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIY-HDWCEAFSTY-PRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~-~d~~e~l~~y-p~sFDlVha~~vfs~~~  257 (334)
                      ..+|||+|||+|.++..|++.+   ..|+++|+++.|++.+.++.. +... .|..+.++.- +++||+|+++       
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------  118 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------  118 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------
T ss_pred             CCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------
Confidence            4799999999999999999885   379999999999999988732 2222 2322344322 4899999987       


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccce
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~  301 (334)
                        .++..+|.++.|+|||||.++..........+...+....+.
T Consensus       119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~  160 (226)
T 3m33_A          119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD  160 (226)
T ss_dssp             --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred             --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence              134578999999999999999443222223444444444443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.32  E-value=5.7e-12  Score=115.86  Aligned_cols=113  Identities=17%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhh-hhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYH-DWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~-d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..+++.+.   .|+++|+++.+++.+.++    ++ +...+ +..+   +++ ++||+|+++.++
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~~~~fD~Vv~n~~~  194 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANLYA  194 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEECCH
T ss_pred             CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCcCCCCCEEEECCcH
Confidence            47999999999999999988764   799999999999988764    32 11111 1111   244 899999998655


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~~~  305 (334)
                      ++      +..++.++.|+|||||.+++++.. ...+.+.+.+....++....
T Consensus       195 ~~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          195 EL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             HH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             HH------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence            43      468999999999999999998754 34567777787777876543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.32  E-value=2.2e-12  Score=124.26  Aligned_cols=103  Identities=11%  Similarity=0.211  Sum_probs=76.4

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-C---CCCCccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-S---TYPRTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~---~yp~sFDlVha~  250 (334)
                      ....+|||+|||+|.++..|+++... ..++++|. +.+++.+.++    |+...+...+.++ .   ++|++||+|+++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence            35689999999999999999884211 36899999 7999988765    3211111111122 1   467899999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++||++.+ .+...+|+++.|+|||||.|++.|.
T Consensus       256 ~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          256 QFLDCFSE-EEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             SCSTTSCH-HHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             chhhhCCH-HHHHHHHHHHHHhcCCCcEEEEEee
Confidence            99998753 3456899999999999999999873

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.32  E-value=2.7e-12  Score=121.48  Aligned_cols=105  Identities=15%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEech
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAHG  251 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~~  251 (334)
                      ......+|||+|||+|.++..|++.... ..++++|. +.+++.+.++    ++...+.....++ .++|.+||+|++++
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~  243 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA  243 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEES
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEeh
Confidence            3345689999999999999999874211 36889999 7999887754    3311111111122 34556899999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++||+.+ .+...+|+++.|+|||||+|++.|.
T Consensus       244 vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          244 VLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hhccCCH-HHHHHHHHHHHHhcCCCCEEEEEee
Confidence            9998753 2457999999999999999999874

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.32  E-value=5.5e-12  Score=116.52  Aligned_cols=135  Identities=13%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCC-CCccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~y-p~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|+.. +.  .+|+++|+|+.++..+.++    |+  +...+ |+.+   ++ +++||+|+++
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~---~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSN  183 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEEC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh---hcccCCccEEEEC
Confidence            3569999999999999999863 22  4799999999999987765    32  12221 2222   23 4899999998


Q ss_pred             h-------------hhccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE-EEecC
Q 019879          251 G-------------LFSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT-KMVDH  307 (334)
Q Consensus       251 ~-------------vfs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~-~~~~~  307 (334)
                      .             ++.|.+..         ..+..++.++.|+|||||++++.......+.+.+++....|.. .....
T Consensus       184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d  263 (276)
T 2b3t_A          184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD  263 (276)
T ss_dssp             CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC
T ss_pred             CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec
Confidence            3             33332211         1357899999999999999999877665666777776666653 22211


Q ss_pred             CCCCCCCceEEEEEe
Q 019879          308 EDGPLVPEKILVAVK  322 (334)
Q Consensus       308 ~~~~~~~e~~l~~~K  322 (334)
                      .   .+.+++++++|
T Consensus       264 ~---~g~~r~~~~~~  275 (276)
T 2b3t_A          264 Y---GDNERVTLGRY  275 (276)
T ss_dssp             T---TSSEEEEEEEC
T ss_pred             C---CCCCcEEEEEE
Confidence            1   25788888875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.31  E-value=4.3e-12  Score=105.92  Aligned_cols=137  Identities=10%  Similarity=0.055  Sum_probs=84.8

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCC-------CC-CccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-------YP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~-------yp-~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++. +.. ..++++|.++ ++..  . . +.........++.       ++ ++||+|+++
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~--~-~-~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~   95 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI--V-G-VDFLQGDFRDELVMKALLERVGDSKVQVVMSD   95 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC--T-T-EEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc--C-c-EEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence            3469999999999999999876 221 3689999997 6543  1 1 1111111111110       45 899999998


Q ss_pred             hhhccccCcC--C------HHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEe--cCCCCCCCCceEEE
Q 019879          251 GLFSLYKDKC--N------IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMV--DHEDGPLVPEKILV  319 (334)
Q Consensus       251 ~vfs~~~~~c--~------~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~--~~~~~~~~~e~~l~  319 (334)
                      ..+++..+..  .      ...++.++.|+|||||.+++.+... ....+...+.. .|.....  .........|.+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  174 (180)
T 1ej0_A           96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIV  174 (180)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEE
T ss_pred             CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEEE
Confidence            8877543210  0      1689999999999999999976432 23333333333 2544321  12222335788888


Q ss_pred             EEec
Q 019879          320 AVKQ  323 (334)
Q Consensus       320 ~~K~  323 (334)
                      +++.
T Consensus       175 ~~~~  178 (180)
T 1ej0_A          175 ATGR  178 (180)
T ss_dssp             EEEE
T ss_pred             EccC
Confidence            8763

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.31  E-value=1.8e-11  Score=117.05  Aligned_cols=145  Identities=21%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEech
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAHG  251 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~~  251 (334)
                      ......+|||+|||+|.++..|++... ...++++|+ +.+++.+.++    |+...+...+.++ .++|..||+|++++
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  256 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF  256 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEec
Confidence            334568999999999999999988531 146899999 8999987764    3321111111222 23555599999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--h--h-----------------------hHHHHHHHHhcccceEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--V--D-----------------------EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--~--~-----------------------~~~~i~~~~~~l~W~~~~  304 (334)
                      +++|+.+ .+...+|.++.|+|||||.+++.+.  .  +                       ..+.+.+++..-.++...
T Consensus       257 vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~  335 (374)
T 1qzz_A          257 VLLNWSD-EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS  335 (374)
T ss_dssp             CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred             cccCCCH-HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence            9998753 2345899999999999999999876  2  1                       123455666777776543


Q ss_pred             ecCCCCCC--CCceEEEEEecc
Q 019879          305 VDHEDGPL--VPEKILVAVKQY  324 (334)
Q Consensus       305 ~~~~~~~~--~~e~~l~~~K~~  324 (334)
                      .....+..  ....++.++|.=
T Consensus       336 ~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          336 ERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             EEEECCSSCSSCEEEEEEEECC
T ss_pred             EEECCCCcccCCcEEEEEEECc
Confidence            22222211  112688888753

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.30  E-value=1.4e-11  Score=115.82  Aligned_cols=103  Identities=21%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC--CCCCCccceEEechh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF--STYPRTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l--~~yp~sFDlVha~~v  252 (334)
                      ....+|||+|||+|.++..|++... ...++++|.+ .+++.+.++    |+.....-.+.++  .+++..||+|+++++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~  241 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNF  241 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcch
Confidence            4568999999999999999987521 1379999999 999987765    3321111111122  145656999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|+.+ .+...+|.++.|+|||||.+++.|.
T Consensus       242 l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          242 LHHFDV-ATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccCCH-HHHHHHHHHHHHhCCCCcEEEEEee
Confidence            998742 3467999999999999999999864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.30  E-value=2.7e-12  Score=113.64  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc----cchhhhhcccC-CCCC-Cc-cceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL----IGIYHDWCEAF-STYP-RT-YDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl----i~~~~d~~e~l-~~yp-~s-FDlVha  249 (334)
                      ..+|||+|||+|.++..++.++.  ..|+++|.++.|++.+.++    |+    +......+..+ +.++ ++ ||+|++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            36899999999999998777664  3699999999999987764    32    12222222222 2333 78 999999


Q ss_pred             chhhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeChh
Q 019879          250 HGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEVD  286 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~~~  286 (334)
                      +..|+    ..+...++.++  .|+|||||.+++.....
T Consensus       132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            87654    23467888898  78999999999987654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.29  E-value=7.2e-12  Score=120.35  Aligned_cols=98  Identities=14%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      .+..+|||+|||+|.++..+++.+.  ..|+++|.++ |++.+.++    |+   +.......+.+ +++ ++||+|++.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~  138 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISE  138 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEEC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEc
Confidence            3457999999999999999998763  3799999995 88877654    33   22222223333 466 899999998


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAII  280 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~li  280 (334)
                      .+..++.+...+..+|.++.|+|||||.++
T Consensus       139 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          139 WMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            643333333457889999999999999998

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.29  E-value=3.9e-12  Score=122.51  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..+++.+.  ..|+++|.| +|+..|.++    |+   +.......+.+ +++ ++||+|++..+
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM  142 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred             CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccc
Confidence            47999999999999999998864  379999999 688877654    43   22233333344 566 99999999876


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .+++.....++.++.++.|+|||||.++..
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            665555567899999999999999998754

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.29  E-value=2.1e-11  Score=110.00  Aligned_cols=97  Identities=14%  Similarity=0.249  Sum_probs=70.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhccc-CC-CCCCccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEA-FS-TYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~-l~-~yp~sFDlVha~  250 (334)
                      ...+|||+|||+|.++..|++... ...|+++|.++.+++.+.++    |+   +......+.. ++ ..+++||+|++.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            347999999999999999998321 25799999999999987664    33   2222222222 22 235899999987


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ..      ......++.++.|+|||||.|++.+
T Consensus       150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          150 AA------KAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             TT------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             Cc------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence            32      2356789999999999999999954

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.29  E-value=2.5e-11  Score=110.83  Aligned_cols=136  Identities=17%  Similarity=0.082  Sum_probs=90.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCC--CccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYP--RTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp--~sFDlVha~  250 (334)
                      ..+|||+|||+|.++..|++.-.-...|+++|.++.+++.+.++    |+.   .... |..+.++.++  ++||+|++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            47999999999999999988511014799999999999987765    432   1221 2222233333  599999986


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh------------hHHHHHHH----HhcccceEEEecCCCCCCCC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKI----VGGMRWDTKMVDHEDGPLVP  314 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~~----~~~l~W~~~~~~~~~~~~~~  314 (334)
                      ..      ..+...++.++.|+|||||.|++.+...            ....++++    ...-++........ |....
T Consensus       144 ~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~  216 (248)
T 3tfw_A          144 AD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTKGW  216 (248)
T ss_dssp             SC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STTCS
T ss_pred             Cc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCCCC
Confidence            42      2345789999999999999999976421            12334444    34456666554222 22245


Q ss_pred             ceEEEEEec
Q 019879          315 EKILVAVKQ  323 (334)
Q Consensus       315 e~~l~~~K~  323 (334)
                      +.+.+++|+
T Consensus       217 DG~~i~~~~  225 (248)
T 3tfw_A          217 DGFTLAWVN  225 (248)
T ss_dssp             EEEEEEEEC
T ss_pred             CeeEEEEEe
Confidence            789999885

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.29  E-value=4.7e-12  Score=112.70  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCCCccceEEech
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      +......+|||+|||+|.++..|++.+   .+|+++|.++.+++.+.++.    .+...........+.+++||+|+++.
T Consensus        66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  142 (231)
T 1vbf_A           66 LDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA  142 (231)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC
Confidence            333445799999999999999999875   47999999999999888762    11222211122112238999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      +++|+.         .++.|+|||||.+++.....
T Consensus       143 ~~~~~~---------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          143 TAPTLL---------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             BBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred             cHHHHH---------HHHHHHcCCCcEEEEEEcCC
Confidence            998764         37999999999999987643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.28  E-value=4.6e-12  Score=114.51  Aligned_cols=141  Identities=11%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h-hhhhcccCCCCCC
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I-YHDWCEAFSTYPR  242 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~-~~d~~e~l~~yp~  242 (334)
                      |..+...+..  ..+|||+|||+|.+|..++.....+ .|+++|+++.|++++.++    |+.. . +.+..+  .+.+.
T Consensus        40 Y~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~--~~~~~  114 (200)
T 3fzg_A           40 YTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES--DVYKG  114 (200)
T ss_dssp             HHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH--HHTTS
T ss_pred             HHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc--cCCCC
Confidence            4444444543  5799999999999999997763333 799999999999988765    3221 1 111111  13458


Q ss_pred             ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------hhHHHHHHHHhcccceEEEecCCCCC
Q 019879          243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------DEIIKVKKIVGGMRWDTKMVDHEDGP  311 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~~~~~l~W~~~~~~~~~~~  311 (334)
                      +||+|.+..++||+.+   .+.++.++.+.|||||.||-.+..           .+-...++.+..=-|.+......   
T Consensus       115 ~~DvVLa~k~LHlL~~---~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~---  188 (200)
T 3fzg_A          115 TYDVVFLLKMLPVLKQ---QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG---  188 (200)
T ss_dssp             EEEEEEEETCHHHHHH---TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET---
T ss_pred             CcChhhHhhHHHhhhh---hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC---
Confidence            9999999999999843   346777999999999999998821           25566777788888887754433   


Q ss_pred             CCCceEEEEEe
Q 019879          312 LVPEKILVAVK  322 (334)
Q Consensus       312 ~~~e~~l~~~K  322 (334)
                        .|-+.+.+|
T Consensus       189 --nEl~y~~~~  197 (200)
T 3fzg_A          189 --NELVYITSG  197 (200)
T ss_dssp             --TEEEEEECC
T ss_pred             --ceEEEEEec
Confidence              455555554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.28  E-value=5.9e-12  Score=134.16  Aligned_cols=104  Identities=9%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----------Cc--cchhhhhcccCCCCCCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GL--IGIYHDWCEAFSTYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----------gl--i~~~~d~~e~l~~yp~sFDlV  247 (334)
                      ...+|||+|||+|.++..|++.+.....|+++|+++.|++.|.+|          |+  +..++...+.+++.+++||+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            457999999999999999998752224799999999999988762          22  222333333443333999999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +|..+|+|+.+ .....++.++.|+|||| .+++++..
T Consensus       801 V~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          801 TCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             EEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             EEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            99999999864 23457999999999999 88887643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.28  E-value=5.9e-12  Score=110.48  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=73.3

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|.++..|++.+   .+|+++|.++.+++.+.++    |+  +...+.......+.+++||+|++
T Consensus        73 l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~  149 (210)
T 3lbf_A           73 LELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIV  149 (210)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             cCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEE
Confidence            344456899999999999999998874   4799999999999988765    32  12222212222222389999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +.+++|+.+         ++.|+|||||.+++.-..
T Consensus       150 ~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          150 TAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             ccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            999988753         689999999999998765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.28  E-value=1e-11  Score=113.39  Aligned_cols=118  Identities=11%  Similarity=0.050  Sum_probs=75.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----------Cc--cchhhhhcccCCC--CC-Ccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----------GL--IGIYHDWCEAFST--YP-RTY  244 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----------gl--i~~~~d~~e~l~~--yp-~sF  244 (334)
                      ...+|||+|||+|.++..|++... ..+|+++|+++.|+..|.++          ++  +..+...+..+.+  ++ ++|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            346899999999999999987521 14799999999999877643          22  1222222222112  55 999


Q ss_pred             ceEEechhhccc-----cCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHhcc
Q 019879          245 DLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGM  298 (334)
Q Consensus       245 DlVha~~vfs~~-----~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~~l  298 (334)
                      |.|++...-.+.     ..+.....+|.++.|+|||||.|++.. ..+....+.+.+...
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~  184 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH  184 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            999875322111     111112579999999999999999864 444555555554443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.27  E-value=1.1e-11  Score=112.89  Aligned_cols=94  Identities=14%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhcccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYK  257 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~  257 (334)
                      ...+|||+|||+|.++..|++.- ...+|+++|.++.+++.+.+++. +.......+.+ +++ ++||+|++..+.    
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~~----  158 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-PFSDTSMDAIIRIYAP----  158 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-SBCTTCEEEEEEESCC----
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhC-CCCCCceeEEEEeCCh----
Confidence            45799999999999999998861 01369999999999999988752 11222222333 355 899999986432    


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                            .++.|+.|+|||||.+++.+..
T Consensus       159 ------~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          159 ------CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             ------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------hhHHHHHHhcCCCcEEEEEEcC
Confidence                  2589999999999999998754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.26  E-value=4.7e-12  Score=111.96  Aligned_cols=119  Identities=17%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----H----cCc--cchhhhhcccCCCCC-CccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----E----RGL--IGIYHDWCEAFSTYP-RTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~----Rgl--i~~~~d~~e~l~~yp-~sFDlVh  248 (334)
                      ...+|||+|||+|.++..|++... ..+|+++|+|+.|+..+.    +    +++  +...+...+.+ +++ ++ |.|+
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~-d~v~  103 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-PPLSGV-GELH  103 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-CSCCCE-EEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-CCCCCC-CEEE
Confidence            457999999999999999988621 257999999999988532    1    232  12222233444 345 55 6665


Q ss_pred             ec---hhhc--cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------------hh-HHHHHHHHhcccceEEE
Q 019879          249 AH---GLFS--LYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------DE-IIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       249 a~---~vfs--~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------------~~-~~~i~~~~~~l~W~~~~  304 (334)
                      ..   ..++  |+.   +...+|.|+.|+|||||.+++....                  .. .+.+...+..-.|++..
T Consensus       104 ~~~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          104 VLMPWGSLLRGVLG---SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EESCCHHHHHHHHT---SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEccchhhhhhhhc---cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            32   2222  332   2368999999999999999996321                  12 23366677777787653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.26  E-value=8.7e-12  Score=113.21  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc-------Cccch------------------
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER-------GLIGI------------------  229 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R-------gli~~------------------  229 (334)
                      +......+|||+|||+|.++..|++.- ....+|+++|+++.+++.|.++       ++...                  
T Consensus        47 ~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (250)
T 1o9g_A           47 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE  126 (250)
T ss_dssp             SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             cccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchh
Confidence            333345799999999999999988750 1236899999999999987743       21000                  


Q ss_pred             -------hh-------------hhcccC-CCC------C-CccceEEechhhccccCc------CCHHHHHHHHHHhhcC
Q 019879          230 -------YH-------------DWCEAF-STY------P-RTYDLIHAHGLFSLYKDK------CNIEDILLEMDRILRP  275 (334)
Q Consensus       230 -------~~-------------d~~e~l-~~y------p-~sFDlVha~~vfs~~~~~------c~~~~~L~Em~RVLRP  275 (334)
                             +.             -.+.++ .++      + ++||+|+|+..+.+..++      .....++.++.|+|||
T Consensus       127 ~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  206 (250)
T 1o9g_A          127 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  206 (250)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             hhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence                   11             111121 122      4 589999999776654332      2356899999999999


Q ss_pred             CeEEEEEeChh
Q 019879          276 EGAIIIRDEVD  286 (334)
Q Consensus       276 GG~lii~D~~~  286 (334)
                      ||++++.+...
T Consensus       207 gG~l~~~~~~~  217 (250)
T 1o9g_A          207 HAVIAVTDRSR  217 (250)
T ss_dssp             TCEEEEEESSS
T ss_pred             CcEEEEeCcch
Confidence            99999976654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.26  E-value=1.1e-11  Score=118.40  Aligned_cols=97  Identities=16%  Similarity=0.199  Sum_probs=74.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..+++.+.  ..|+++|.+ +|+..+.++    |+   +...+...+.+ +++ ++||+|+|..+
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM  114 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred             CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCc
Confidence            46999999999999999998764  379999999 688876654    33   22233223333 456 89999999876


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      .+++.+...+..++.++.|+|||||.++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            66555556788999999999999999984

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.25  E-value=7.5e-12  Score=117.79  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=73.4

Q ss_pred             CceEeeecccccH----HHHHHHhC-CC-c-EEEEEeccCChhhHHHHHHcCc---------------------------
Q 019879          181 YRNIMDMNAGFGG----FAAAIQSS-KL-W-VMNVVPTLADKNTLGVIYERGL---------------------------  226 (334)
Q Consensus       181 ~r~VLD~GCG~G~----faa~L~~~-~v-~-v~nVv~vD~s~~~L~~a~~Rgl---------------------------  226 (334)
                      ..+|||+|||||.    +|..|.+. +. . ...|+++|+|++||+.|.+.-.                           
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999998    66666653 21 0 1379999999999999876310                           


Q ss_pred             ----------cc-hhhhhcccCCCCC--CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          227 ----------IG-IYHDWCEAFSTYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       227 ----------i~-~~~d~~e~l~~yp--~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                                +. ..+++.+  ++|+  +.||+|+|.+|+.|+. ......++.++++.|||||+|++...
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             eeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence                      00 0122222  2344  7899999999999875 34457999999999999999999643

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.25  E-value=1.2e-11  Score=115.39  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.|+..++..+..  .|+++|.++.+++.+.++    |+..   .....+..+++ +++||+|+++...
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~  202 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  202 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch
Confidence            479999999999999999987643  699999999999987664    4322   22222223322 5899999987332


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------hhHHHHHHHHhcccceEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------~~~~~i~~~~~~l~W~~~~  304 (334)
                             ....++.++.|+|||||.+++.+..       +..+.+.+.+....|++..
T Consensus       203 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          203 -------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             -------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence                   2357899999999999999997643       3567788888888887765

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.25  E-value=2e-11  Score=106.14  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=79.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCc-EEEEEeccCChhhHHHHHHcCccchhhhhcccCC---------------------
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLW-VMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFS---------------------  238 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~-v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~---------------------  238 (334)
                      ..+|||+|||+|.++..|+++... ...|+++|.++ +..   ..++ ...+...+...                     
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~~---~~~v-~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~   97 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI-MDP---IPNV-YFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK   97 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC-CCC---CTTC-EEEECCTTTTSSCCC-----------CHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc-cCC---CCCc-eEEEccccchhhhhhccccccccccchhhHHH
Confidence            478999999999999999875210 24799999995 311   0111 11111111111                     


Q ss_pred             ---CCC-CccceEEechhhccccCc-CC-------HHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEEEe
Q 019879          239 ---TYP-RTYDLIHAHGLFSLYKDK-CN-------IEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       239 ---~yp-~sFDlVha~~vfs~~~~~-c~-------~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~~~  305 (334)
                         .++ ++||+|+|+..+++.... .+       ...++.++.|+|||||.|++.... .....+...+...--.+...
T Consensus        98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v~~~  177 (201)
T 2plw_A           98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTT  177 (201)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEEEEC
T ss_pred             HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheEEEE
Confidence               045 799999998766542100 01       124899999999999999996532 22334444444432223332


Q ss_pred             c-CCCCCCCCceEEEEEe
Q 019879          306 D-HEDGPLVPEKILVAVK  322 (334)
Q Consensus       306 ~-~~~~~~~~e~~l~~~K  322 (334)
                      . ....+...|.+++|++
T Consensus       178 ~~~~~r~~s~e~y~v~~~  195 (201)
T 2plw_A          178 KPKASRNESREIYLVCKN  195 (201)
T ss_dssp             CCC-----CCEEEEEEEE
T ss_pred             CCcccCCcCceEEEEEec
Confidence            2 1222335789999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.25  E-value=1.6e-11  Score=108.77  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=85.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCC-----CccceE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYP-----RTYDLI  247 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp-----~sFDlV  247 (334)
                      ..+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+.   ...+ +..+.++.++     ++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            46999999999999999988511124799999999999987665    332   1121 1112221122     799999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHH----HhcccceEEEecCCCCC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKI----VGGMRWDTKMVDHEDGP  311 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~----~~~l~W~~~~~~~~~~~  311 (334)
                      ++...      ..+...++.++.|+|||||+|++.|..            .....++.+    ...-++.......    
T Consensus       145 ~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~----  214 (225)
T 3tr6_A          145 YIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI----  214 (225)
T ss_dssp             EECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS----
T ss_pred             EECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc----
Confidence            97642      234678999999999999999998742            012234444    3334566655322    


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                        .+.+++++|.
T Consensus       215 --~dG~~~~~k~  224 (225)
T 3tr6_A          215 --GDGLTLARKK  224 (225)
T ss_dssp             --TTCEEEEEEC
T ss_pred             --CCccEEEEEC
Confidence              3458888874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.25  E-value=4.4e-11  Score=107.39  Aligned_cols=96  Identities=13%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc----cchhhhhccc---CCCCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL----IGIYHDWCEA---FSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl----i~~~~d~~e~---l~~yp~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..|++. +  ...|+++|.++.++..+.++.-    +.......+.   ..+++.+||+|++  
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~--  149 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE--  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEE--
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEE--
Confidence            4578999999999999999886 3  1369999999999988766421    1111111111   0123478999983  


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                         ++.+......++.++.|+|||||.+++.
T Consensus       150 ---~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          150 ---DVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence               3333223477899999999999999995

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.25  E-value=5.3e-12  Score=114.51  Aligned_cols=101  Identities=14%  Similarity=0.038  Sum_probs=64.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCC-hhhHHHH---HHc----Ccc--chhhhhcccCCC-CCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD-KNTLGVI---YER----GLI--GIYHDWCEAFST-YPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s-~~~L~~a---~~R----gli--~~~~d~~e~l~~-yp~sFDlVh  248 (334)
                      ...+|||+|||+|.++..|++... ..+|+++|+| +.|++.|   .++    |+.  ......++.++. +.+.||.|+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            357999999999999999985421 2579999999 7787776   332    331  122222333422 124555555


Q ss_pred             echhhccc--cCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          249 AHGLFSLY--KDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       249 a~~vfs~~--~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      ++..+.+.  ....+...+|.|+.|+|||||.|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            54322110  0011235789999999999999999

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.25  E-value=5.5e-12  Score=107.82  Aligned_cols=101  Identities=14%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..+++.+.  ..|+++|.++.+++.+.++    |+.   .... |..+.++..+++||+|+++.
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            457999999999999999988753  4799999999999987664    221   1111 22221223447899999986


Q ss_pred             hhccccCcCCHHHHHHHHH--HhhcCCeEEEEEeChh
Q 019879          252 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEVD  286 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~--RVLRPGG~lii~D~~~  286 (334)
                      .++.    ...+.++..+.  |+|||||.+++.....
T Consensus       109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          109 PYAK----ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCc----chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            6642    12456677776  9999999999987654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.24  E-value=1.6e-11  Score=115.82  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=76.4

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchh-hhhcccCCCCCCccce
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIY-HDWCEAFSTYPRTYDL  246 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~-~d~~e~l~~yp~sFDl  246 (334)
                      .+.... .+|||+|||+|.++..|+++.. ...++++|. +.+++.+.++    |+   +... .|.   +.++|++||+
T Consensus       163 ~~~~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~  236 (334)
T 2ip2_A          163 LLDFRG-RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQEVPSNGDI  236 (334)
T ss_dssp             HSCCTT-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TTCCCSSCSE
T ss_pred             hCCCCC-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CCCCCCCCCE
Confidence            334444 8999999999999999987521 136899999 7999887765    21   1111 121   1245688999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++++++||+.+ .+...+|+++.|+|||||.+++.|.
T Consensus       237 v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          237 YLLSRIIGDLDE-AASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             EEEESCGGGCCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EEEchhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999998753 2346999999999999999999863

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.24  E-value=2.2e-11  Score=116.59  Aligned_cols=108  Identities=13%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYD  245 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFD  245 (334)
                      ++..+......+|||+|||+|.++..|+++.. ...++++|. +.+++.+.++    |+...+.....++.  +++ .+|
T Consensus       182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D  258 (359)
T 1x19_A          182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EAD  258 (359)
T ss_dssp             HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-CCS
T ss_pred             HHHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-CCC
Confidence            33344445668999999999999999988521 146899999 8999988765    43211111112221  344 349


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+++.+|+|+.+ .+...+|+++.|+|||||.+++.|
T Consensus       259 ~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          259 AVLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999999998753 346899999999999999999887

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.24  E-value=5e-12  Score=106.37  Aligned_cols=98  Identities=13%  Similarity=0.189  Sum_probs=69.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhh-hhcccCCCCC---CccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYH-DWCEAFSTYP---RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~-d~~e~l~~yp---~sFDlVha~~  251 (334)
                      ..+|||+|||+|.++..+++.+.   +|+++|.++.+++.+.++    ++ +...+ |..+.++.++   .+||+|+++.
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            46899999999999999998864   399999999999987764    22 11222 1111111122   3899999997


Q ss_pred             hhccccCcCCHHHHHHHHH--HhhcCCeEEEEEeChh
Q 019879          252 LFSLYKDKCNIEDILLEMD--RILRPEGAIIIRDEVD  286 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~--RVLRPGG~lii~D~~~  286 (334)
                      .|+  .   ..+.++.++.  |+|||||.+++.....
T Consensus       119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            775  2   2345566666  9999999999987654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.23  E-value=1.9e-11  Score=117.07  Aligned_cols=114  Identities=12%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCC-CCccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTY-PRTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~y-p~sFDlVha~~vfs  254 (334)
                      ...+|||+|||+|.++..+++.+.. ..|+++|+|+.|++.+.++    ++...+  .+.++..+ +++||+|+++..|+
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~--~~~d~~~~~~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEV--FASNVFSEVKGRFDMIISNPPFH  272 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEE--EECSTTTTCCSCEEEEEECCCCC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEE--EEccccccccCCeeEEEECCCcc
Confidence            3468999999999999999876421 3689999999999987764    321111  11222233 48999999999987


Q ss_pred             ccc--CcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHh
Q 019879          255 LYK--DKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVG  296 (334)
Q Consensus       255 ~~~--~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~  296 (334)
                      +..  +..+...++.++.|+|||||.+++..+..  .-..++..+.
T Consensus       273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~  318 (343)
T 2pjd_A          273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFG  318 (343)
T ss_dssp             SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHS
T ss_pred             cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcC
Confidence            531  12346799999999999999999976432  2334444444

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.23  E-value=4.5e-11  Score=107.20  Aligned_cols=136  Identities=13%  Similarity=0.026  Sum_probs=80.8

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHH----HHHHcCccchhhhhccc---CCCCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLG----VIYERGLIGIYHDWCEA---FSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~----~a~~Rgli~~~~d~~e~---l~~yp~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++..|++. +. ...|+++|.++.|++    .+.++..+.......+.   ++..+++||+|+++.
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~-~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGP-DGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence            4579999999999999999875 11 136899999976544    44443222222211222   211238999999863


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh----------hHHHHHHHHhcccceEEE-ecCCCCCCCCceEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD----------EIIKVKKIVGGMRWDTKM-VDHEDGPLVPEKILVA  320 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~~~~~l~W~~~~-~~~~~~~~~~e~~l~~  320 (334)
                      .     .......++.++.|+|||||.++++-...          ...+-.+.+....++... .+...-+ ...-++++
T Consensus       156 ~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v~~  229 (233)
T 2ipx_A          156 A-----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVVVG  229 (233)
T ss_dssp             C-----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEEEE
T ss_pred             C-----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEEEE
Confidence            3     11223556889999999999999964431          122213445666676653 2222111 23445566


Q ss_pred             Ee
Q 019879          321 VK  322 (334)
Q Consensus       321 ~K  322 (334)
                      ++
T Consensus       230 ~~  231 (233)
T 2ipx_A          230 VY  231 (233)
T ss_dssp             EE
T ss_pred             Ee
Confidence            55

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.23  E-value=2.3e-11  Score=116.89  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceE
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLI  247 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlV  247 (334)
                      .+...+..+|||+|||+|.++..+++.+.  ..|+++|.+ +|+..+.++    |+   +...+...+.+ +++++||+|
T Consensus        45 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~~D~I  120 (348)
T 2y1w_A           45 NHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDII  120 (348)
T ss_dssp             TGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEE
T ss_pred             ccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEEcchhhC-CCCCceeEE
Confidence            33333457999999999999999988764  379999999 588766554    43   22222222232 345889999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ++..+++|+. ...+...+.++.|+|||||.+++.
T Consensus       121 vs~~~~~~~~-~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          121 ISEPMGYMLF-NERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EECCCBTTBT-TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchhcCC-hHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9998888765 345778889999999999999865

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.23  E-value=4.1e-11  Score=115.63  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEe
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHA  249 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha  249 (334)
                      .++.....+|||+|||+|.++..|++... ...++++|. +.+++.+.++    |+...+.....++ .++|..||+|++
T Consensus       197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~  274 (369)
T 3gwz_A          197 AYDFSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLI  274 (369)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEE
T ss_pred             hCCCccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEh
Confidence            34455678999999999999999988521 136899999 7999887654    3311111111122 345568999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------------------hhHHHHHHHHhcccceEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------------------DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------------------~~~~~i~~~~~~l~W~~~~~  305 (334)
                      +++|+++.+ .....+|+++.|+|||||.|+|.|..                        ...+.++++++.-.++....
T Consensus       275 ~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~  353 (369)
T 3gwz_A          275 KHVLHDWDD-DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERS  353 (369)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEE
T ss_pred             hhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEE
Confidence            999988653 23458999999999999999997631                        01345666677777776543


Q ss_pred             cC-CCCCCCCceEEEEEe
Q 019879          306 DH-EDGPLVPEKILVAVK  322 (334)
Q Consensus       306 ~~-~~~~~~~e~~l~~~K  322 (334)
                      .. ..   ....++.++|
T Consensus       354 ~~~~~---~~~svie~~~  368 (369)
T 3gwz_A          354 LPCGA---GPVRIVEIRR  368 (369)
T ss_dssp             EECSS---SSEEEEEEEE
T ss_pred             EECCC---CCcEEEEEEe
Confidence            22 22   2456777765

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.23  E-value=2e-10  Score=105.87  Aligned_cols=125  Identities=12%  Similarity=0.128  Sum_probs=84.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-------c---cchhhhhcccCC------C
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-------L---IGIYHDWCEAFS------T  239 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-------l---i~~~~d~~e~l~------~  239 (334)
                      +......+|||+|||+|.++..|+++.. ..+|+++|+++.+++.+.++-       +   +.+++.....+.      .
T Consensus        32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           32 VADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             CCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred             hcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence            3333457999999999999999987631 257999999999999887642       1   112221112221      2


Q ss_pred             CC-CccceEEechhhcc---------------ccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE
Q 019879          240 YP-RTYDLIHAHGLFSL---------------YKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       240 yp-~sFDlVha~~vfs~---------------~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~  302 (334)
                      ++ ++||+|+++--|..               ....+.++.++.++.|+|||||.|++.-..+....+...++.. +..
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~  188 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG  188 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence            44 89999999833221               1123457899999999999999999987777666666666653 553

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.22  E-value=2.8e-11  Score=107.93  Aligned_cols=140  Identities=11%  Similarity=0.055  Sum_probs=87.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCC-----Cccce
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYP-----RTYDL  246 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp-----~sFDl  246 (334)
                      +..+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+.   .... |..+.++.++     ++||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            357999999999999999987410114799999999999987764    431   1222 2112233333     69999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHhcccceEEEecC-CCCCCCCceEEEEEec
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVGGMRWDTKMVDH-EDGPLVPEKILVAVKQ  323 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~~l~W~~~~~~~-~~~~~~~e~~l~~~K~  323 (334)
                      |++....+++.   ....++.++ |+|||||.|++.|...  .-.-++.+...-++....... .......+.+.++++.
T Consensus       138 V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          138 VFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             EEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             EEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            99987666543   234677777 9999999999987532  111222223334565554321 1111235678888765

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.22  E-value=1.5e-12  Score=129.24  Aligned_cols=142  Identities=11%  Similarity=0.126  Sum_probs=90.7

Q ss_pred             ccccchhhhh-hHHHHHHHHHHHhhcCCCCCceEeeeccc------ccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          152 AESYQEDSNK-WKKHVNAYKKINRLLDSGRYRNIMDMNAG------FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       152 ~e~f~~d~~~-W~~~v~~y~~ll~~l~~~~~r~VLD~GCG------~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ++.|..|... |......|..++..+.. +..+|||+|||      +|+.+..+..+-.-...|+++|+++.|..   ..
T Consensus       188 A~~Y~tDK~~~~h~y~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~  263 (419)
T 3sso_A          188 SSRYFTPKFGFLHWFTPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DE  263 (419)
T ss_dssp             HHHTTCTTBSSSCBCHHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CB
T ss_pred             HHHhCCCcccccchHHHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cC
Confidence            3455544433 33344567666665543 35799999999      77766666553101147999999988831   11


Q ss_pred             CccchhhhhcccCCCC------CCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------------
Q 019879          225 GLIGIYHDWCEAFSTY------PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------------  285 (334)
Q Consensus       225 gli~~~~d~~e~l~~y------p~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------------  285 (334)
                      .-+......++++++.      +++||+|+|+.. ++   ..+...+|.|+.|+|||||+|++.|..             
T Consensus       264 ~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~---~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~  339 (419)
T 3sso_A          264 LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HI---NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP  339 (419)
T ss_dssp             TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CC---HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST
T ss_pred             CCcEEEEecccccchhhhhhcccCCccEEEECCc-cc---chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC
Confidence            1122233223333222      389999999743 32   235789999999999999999998643             


Q ss_pred             -----hhHHHHHHHHhcccce
Q 019879          286 -----DEIIKVKKIVGGMRWD  301 (334)
Q Consensus       286 -----~~~~~i~~~~~~l~W~  301 (334)
                           ..++.+++++..++|.
T Consensus       340 ~~~~~tii~~lk~l~D~l~~~  360 (419)
T 3sso_A          340 QECSGTSLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             TCCTTSHHHHHHHHHHHHTGG
T ss_pred             CcchhHHHHHHHHHHHHhccc
Confidence                 2567788887777765

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.22  E-value=4.8e-11  Score=105.20  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=69.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhh-hhcccCCCCCCccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYH-DWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~-d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+   +...+ +..+.++..++ ||+|++...
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            47999999999999999987511024799999999999987654    33   11222 21122233457 999998722


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                            ..+...++.++.|+|||||.+++.+
T Consensus       136 ------~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          136 ------VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             ------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence                  2457899999999999999999965

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.22  E-value=1.6e-11  Score=116.59  Aligned_cols=143  Identities=11%  Similarity=0.147  Sum_probs=95.6

Q ss_pred             HHhhcCCCC-CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hh-hhhcccCCC-CC
Q 019879          172 INRLLDSGR-YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IY-HDWCEAFST-YP  241 (334)
Q Consensus       172 ll~~l~~~~-~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~-~d~~e~l~~-yp  241 (334)
                      ++..+.... ..+|||+|||+|.++..|++.... ..++++|. +.+++.+.++    ++..   .. .|..+ .++ .+
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  246 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLD-ARNFEG  246 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTC-GGGGTT
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCccc-CcccCC
Confidence            444344334 689999999999999999875211 46889999 6898877654    3321   11 12111 111 45


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------h--------------------hHHHHHHH
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------D--------------------EIIKVKKI  294 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------~--------------------~~~~i~~~  294 (334)
                      +.||+|+++++|||+.+ .+...+|+++.|+|||||.|++.|..       .                    ..+.++++
T Consensus       247 ~~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  325 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV  325 (352)
T ss_dssp             CCEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred             CCccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence            78999999999998753 34679999999999999999998621       0                    12334555


Q ss_pred             HhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          295 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       295 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      +..-.++.....     .+...+++++|+
T Consensus       326 l~~aGf~~~~~~-----~g~~~l~~a~kp  349 (352)
T 3mcz_A          326 VRDAGLAVGERS-----IGRYTLLIGQRS  349 (352)
T ss_dssp             HHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred             HHHCCCceeeec-----cCceEEEEEecC
Confidence            666666655421     134678888885

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.21  E-value=1.7e-11  Score=117.16  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=73.5

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceE
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLI  247 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlV  247 (334)
                      +..+......+|||+|||+|.++..|+++... ..++++|.+ .++.  .++    ++...+.-...++ .++| +||+|
T Consensus       177 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v  251 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREVP-HADVH  251 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCCC-CCSEE
T ss_pred             HHhCCccCCceEEEECCccCHHHHHHHHHCCC-CEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCCC-CCcEE
Confidence            33445556789999999999999999885322 468999985 5544  111    2211111111122 3456 99999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++++|||+.+ .+...+|+++.|+|||||.|+|.|.
T Consensus       252 ~~~~vlh~~~d-~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          252 VLKRILHNWGD-EDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEESCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEehhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            99999998753 2346999999999999999999874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.21  E-value=3.6e-11  Score=106.58  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=86.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCC----CccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYP----RTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp----~sFDlVh  248 (334)
                      ..+|||+|||+|.++..|++.--....|+++|.++.++..+.++    |+.   .... |..+.++.++    .+||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            47999999999999999988611014799999999999887654    431   1111 1112111121    5799999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh------------hHHHHHHH----HhcccceEEEecCCCCCC
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD------------EIIKVKKI----VGGMRWDTKMVDHEDGPL  312 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~~----~~~l~W~~~~~~~~~~~~  312 (334)
                      +....+      ....++.++.|+|||||.+++.+...            ....++++    ...-++.+...... +..
T Consensus       139 ~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~~~  211 (223)
T 3duw_A          139 IDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV-GSK  211 (223)
T ss_dssp             ECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-ETT
T ss_pred             EcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-CCC
Confidence            874432      35689999999999999999875421            12333443    33445665543321 112


Q ss_pred             CCceEEEEEec
Q 019879          313 VPEKILVAVKQ  323 (334)
Q Consensus       313 ~~e~~l~~~K~  323 (334)
                      +.+.++++++.
T Consensus       212 ~~dG~~~~~~~  222 (223)
T 3duw_A          212 GYDGFIMAVVK  222 (223)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCeeEEEEEe
Confidence            35678888763

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.21  E-value=2.6e-11  Score=118.80  Aligned_cols=113  Identities=17%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|++.+.   .|+++|+++.+++.+.++    ++ +......+..+ ..+ ++||+|+++..|
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~-~~~~~~fD~Ii~npp~  308 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA-LTEEARFDIIVTNPPF  308 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-SCTTCCEEEEEECCCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc-cccCCCeEEEEECCch
Confidence            347999999999999999999863   799999999999887664    22 22222222222 234 899999999998


Q ss_pred             ccccC--cCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHh
Q 019879          254 SLYKD--KCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVG  296 (334)
Q Consensus       254 s~~~~--~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~  296 (334)
                      ++...  ......++.++.|+|||||.+++..+..  +-..+++.+.
T Consensus       309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~  355 (381)
T 3dmg_A          309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG  355 (381)
T ss_dssp             CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred             hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence            87321  2346789999999999999999986543  3334445443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.20  E-value=2.6e-11  Score=115.54  Aligned_cols=107  Identities=25%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~  250 (334)
                      +......+|||+|||+|.++..|++.... ..++++|+ +.+++.+.++    |+...+.-.+.++ .++|..||+|+++
T Consensus       179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~  256 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILS  256 (360)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEE
T ss_pred             CCCccCcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEc
Confidence            34445689999999999999999875322 36889998 7899887664    3311111111121 2355569999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++|+|+.+ .+...+|.++.|+|||||.+++.+..
T Consensus       257 ~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          257 FVLLNWPD-HDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            99998753 23468999999999999999998754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.20  E-value=3.2e-11  Score=109.56  Aligned_cols=114  Identities=14%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc------------Ccc--chhhhhccc-CC-CCC-Cc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------------GLI--GIYHDWCEA-FS-TYP-RT  243 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R------------gli--~~~~d~~e~-l~-~yp-~s  243 (334)
                      ..+|||+|||+|.++..|+..+.. .+|+++|+|+.+++.+.++            |+.  ......+.. ++ .++ ++
T Consensus        50 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           50 KVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            478999999999999999886421 4799999999999877553            431  122211122 22 155 89


Q ss_pred             cceEEechhhccc-----cCcCCHHHHHHHHHHhhcCCeEEEEE-eChhhHHHHHHHH
Q 019879          244 YDLIHAHGLFSLY-----KDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIV  295 (334)
Q Consensus       244 FDlVha~~vfs~~-----~~~c~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~~~  295 (334)
                      ||.|+...--...     ..+.....++.++.|+|||||.|++. |..+..+.+.+.+
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  186 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHL  186 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHH
Confidence            9998754100000     00001158999999999999999985 4444444444443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.20  E-value=1.1e-12  Score=117.71  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..|++.+   ..|+++|+++.|++.+.++    |+   +...+.....++ .+++||+|+++..+
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~  154 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW  154 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred             CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence            4799999999999999999986   4799999999999987654    32   222222122222 23899999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++..+   ....+.++.|+|||||.+++..
T Consensus       155 ~~~~~---~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          155 GGPDY---ATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             SSGGG---GGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCcch---hhhHHHHHHhhcCCcceeHHHH
Confidence            87643   2347779999999999977754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.20  E-value=5.8e-11  Score=105.03  Aligned_cols=135  Identities=10%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCC-------CC----CccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-------YP----RTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~-------yp----~sFDlVh  248 (334)
                      +..+|||+|||+|+++..|++++   ..|+++|+++.. .   ..++.-...|.. ....       ++    ++||+|+
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-~---~~~v~~~~~D~~-~~~~~~~~~~~~~~~~~~~~D~Vl   96 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-E---IAGVRFIRCDIF-KETIFDDIDRALREEGIEKVDDVV   96 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-C---CTTCEEEECCTT-SSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-c---CCCeEEEEcccc-CHHHHHHHHHHhhcccCCcceEEe
Confidence            35799999999999999999874   468999998532 1   012111111111 1110       11    4899999


Q ss_pred             echhhc--------cccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceE-EEecC-CCCCCCCceE
Q 019879          249 AHGLFS--------LYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDT-KMVDH-EDGPLVPEKI  317 (334)
Q Consensus       249 a~~vfs--------~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~-~~~~~-~~~~~~~e~~  317 (334)
                      |+....        |.......+.++.++.|+|||||.|++..... ....+...++.. +.. .+... -.-+...|.|
T Consensus        97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y  175 (191)
T 3dou_A           97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIY  175 (191)
T ss_dssp             ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEE
T ss_pred             cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEE
Confidence            974321        11111123578999999999999999865322 223344444332 332 22221 1112358999


Q ss_pred             EEEEec
Q 019879          318 LVAVKQ  323 (334)
Q Consensus       318 l~~~K~  323 (334)
                      +||++-
T Consensus       176 ~v~~~~  181 (191)
T 3dou_A          176 IMFFGF  181 (191)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            999864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.20  E-value=3.9e-11  Score=110.87  Aligned_cols=116  Identities=9%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----Cc--cchhhhhcccCCCCC-Cccce
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GL--IGIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----gl--i~~~~d~~e~l~~yp-~sFDl  246 (334)
                      +......+|||+|||+|.++..|++. +. ...|+++|.++.+++.+.++     |+  +.......  ..+++ ++||+
T Consensus       106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~~~~~~~fD~  182 (275)
T 1yb2_A          106 CGLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI--ADFISDQMYDA  182 (275)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT--TTCCCSCCEEE
T ss_pred             cCCCCcCEEEEecCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch--hccCcCCCccE
Confidence            34445579999999999999999875 10 14799999999999987765     42  11121111  12445 78999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceE
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDT  302 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~  302 (334)
                      |+++     .+   +...+|.++.|+|||||.+++.+... ..+.+.+.+....+..
T Consensus       183 Vi~~-----~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~  231 (275)
T 1yb2_A          183 VIAD-----IP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH  231 (275)
T ss_dssp             EEEC-----CS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred             EEEc-----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence            9883     22   34689999999999999999998765 4555655555555543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.20  E-value=8.4e-11  Score=104.67  Aligned_cols=98  Identities=9%  Similarity=-0.002  Sum_probs=66.2

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcC--c--cchhhhhccc---CCCCCCccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG--L--IGIYHDWCEA---FSTYPRTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rg--l--i~~~~d~~e~---l~~yp~sFDlVha~  250 (334)
                      ....+|||+|||+|.++..|++. +.. ..|+++|.++.|++.+.++.  .  +.......+.   +.+++.+||+|+++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            34579999999999999999875 211 36899999998887665431  1  1112111111   12335789999986


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..     .......++.++.|+|||||.+++.
T Consensus       151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          151 VA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            33     1112345599999999999999986

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.20  E-value=4e-11  Score=108.41  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cccc---hhh-hhcccCCCCC-Cccc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFSTYP-RTYD  245 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~-d~~e~l~~yp-~sFD  245 (334)
                      +......+|||+|||+|.++..|++. +- ...|+++|.++.+++.+.++    |+..   ..+ |..   .+++ ++||
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D  164 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY---EGIEEENVD  164 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG---GCCCCCSEE
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh---hccCCCCcC
Confidence            34445679999999999999999886 21 14699999999999988765    4322   222 222   2355 8899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhccc
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMR  299 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~  299 (334)
                      +|+++     .   .+...++.++.|+|||||.+++.... +...++.+.++...
T Consensus       165 ~v~~~-----~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          165 HVILD-----L---PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             EEEEC-----S---SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             EEEEC-----C---CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            99884     2   23467899999999999999998753 34555555555444

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.20  E-value=2.1e-11  Score=107.87  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..++.++.  ..|+++|.++.|++.+.++    |+  +...+..+..+.+++ ++||+|+++..|
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            36899999999999998877764  3799999999999987654    32  222222222222334 899999998665


Q ss_pred             ccccCcCCHHHHHHHHHH--hhcCCeEEEEEeChh
Q 019879          254 SLYKDKCNIEDILLEMDR--ILRPEGAIIIRDEVD  286 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~R--VLRPGG~lii~D~~~  286 (334)
                      +    ......++.++.+  +|||||.+++.....
T Consensus       133 ~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 R----RGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             S----TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             C----CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            4    2346778888865  699999999987654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.19  E-value=2.5e-11  Score=106.88  Aligned_cols=101  Identities=16%  Similarity=0.032  Sum_probs=72.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCCCccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp~sFDlVh  248 (334)
                      +......+|||+|||+|.++..|++......+|+++|.++.+++.+.++    |+  +.... +..+.+ +.+++||+|+
T Consensus        73 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~  151 (215)
T 2yxe_A           73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIY  151 (215)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEE
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEE
Confidence            3334457999999999999999987531013699999999999988765    22  11111 111111 1137899999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      ++.+++|+.         .++.|+|||||.+++.....
T Consensus       152 ~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          152 TTAAGPKIP---------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             ESSBBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred             ECCchHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence            999998764         38999999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.19  E-value=2e-11  Score=111.31  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             CceEeeecccccHHHHHHHhC----CCcEEEEEeccCChhhHHHHHHcC-ccchhhhhccc---CCCCC-CccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS----KLWVMNVVPTLADKNTLGVIYERG-LIGIYHDWCEA---FSTYP-RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~----~v~v~nVv~vD~s~~~L~~a~~Rg-li~~~~d~~e~---l~~yp-~sFDlVha~~  251 (334)
                      ..+|||+|||+|.+++.|++.    + ....|+++|.++.|++.+...+ -+...+..+..   ++..+ .+||+|++..
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            469999999999999998874    1 1247999999999987665221 12222222222   12223 4799999875


Q ss_pred             hhccccCcCCHHHHHHHHHH-hhcCCeEEEEEeChh-----hHHHHHHHHhcc--cceEEEecCCCCCCCCceEEEEEe
Q 019879          252 LFSLYKDKCNIEDILLEMDR-ILRPEGAIIIRDEVD-----EIIKVKKIVGGM--RWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~R-VLRPGG~lii~D~~~-----~~~~i~~~~~~l--~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      .  |    .+...+|.|+.| +|||||+|++.|...     .-..+..+++..  ++.............++.++...+
T Consensus       161 ~--~----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~g~~~~~~  233 (236)
T 2bm8_A          161 A--H----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA  233 (236)
T ss_dssp             S--C----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTTTTSCTTTTTCEEEECC
T ss_pred             c--h----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchhhcccccccchHhhhcc
Confidence            3  3    257889999998 999999999987421     113566666666  566542211111223455555544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.19  E-value=1.5e-10  Score=104.53  Aligned_cols=131  Identities=11%  Similarity=0.083  Sum_probs=86.2

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhh-hhcccCCCC-CCccceEEech
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYH-DWCEAFSTY-PRTYDLIHAHG  251 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~-d~~e~l~~y-p~sFDlVha~~  251 (334)
                      .+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+.    .... +..+.++.+ +++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            3999999999999999987310014699999999999887654    332    1111 111223345 48999999874


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHHHhcccc----eEEEecCCCCCCCCc
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKIVGGMRW----DTKMVDHEDGPLVPE  315 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~~~~l~W----~~~~~~~~~~~~~~e  315 (334)
                      ..      .+...++.++.|+|||||.+++.+..            .....++++...++.    ++.+..      ..+
T Consensus       138 ~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp------~gd  205 (221)
T 3dr5_A          138 SP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP------LGA  205 (221)
T ss_dssp             CT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES------STT
T ss_pred             cH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee------ccc
Confidence            32      34567999999999999999996531            122344555444444    333322      246


Q ss_pred             eEEEEEecc
Q 019879          316 KILVAVKQY  324 (334)
Q Consensus       316 ~~l~~~K~~  324 (334)
                      .+++++|.+
T Consensus       206 Gl~~~~~~~  214 (221)
T 3dr5_A          206 GLTVVTKAL  214 (221)
T ss_dssp             CEEEEEECC
T ss_pred             hHHHHHHHH
Confidence            799999876

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.19  E-value=1e-10  Score=105.33  Aligned_cols=115  Identities=11%  Similarity=0.094  Sum_probs=80.6

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----Cc--cchhhhhcccCCCCC-CccceE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----GL--IGIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----gl--i~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      ......+|||+|||+|.++..|++. +. ..+|+++|.++.+++.+.++     |.  +...+.....+ +++ ++||+|
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~~~D~v  170 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELEEAAYDGV  170 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCCTTCEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCCCCCcCEE
Confidence            3344579999999999999999876 21 13799999999999988765     42  22222222222 355 899999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccce
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD  301 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~  301 (334)
                      +++     .   .+...++.++.|+|||||.+++.+... .+.++...+....|.
T Consensus       171 ~~~-----~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          171 ALD-----L---MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             EEE-----S---SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred             EEC-----C---cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            884     2   234579999999999999999998764 455555555555443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.19  E-value=7.4e-11  Score=108.90  Aligned_cols=101  Identities=10%  Similarity=-0.062  Sum_probs=70.9

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchh-hhhcc--cCCCCCCccceEEec
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIY-HDWCE--AFSTYPRTYDLIHAH  250 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~-~d~~e--~l~~yp~sFDlVha~  250 (334)
                      -....+|||+|||+|.++..|++.-.....|+++|++++|++.+.++    +.+... .+-+.  ..+....+||+|++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            34568999999999999999987411113689999999999877654    222211 12111  122233899999875


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                        +.|   ..+...++.|+.|+|||||.+++++
T Consensus       155 --~~~---~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          155 --VAQ---PEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             --CCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ccC---ChhHHHHHHHHHHhccCCCEEEEEE
Confidence              333   2346789999999999999999975

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.19  E-value=2.3e-11  Score=115.11  Aligned_cols=101  Identities=13%  Similarity=0.011  Sum_probs=73.3

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+|||+|.++..|++.+.....|+++|.++++++.+.++    |+  +..........++.+++||+|++
T Consensus        71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~  150 (317)
T 1dl5_A           71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV  150 (317)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEE
Confidence            3334457999999999999999987532113599999999999988765    43  22222222222222389999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ..+++|+.         .++.|+|||||.+++....
T Consensus       151 ~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          151 TVGVDEVP---------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CSBBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred             cCCHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence            99998764         4789999999999998654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.18  E-value=7.5e-11  Score=108.58  Aligned_cols=99  Identities=11%  Similarity=-0.012  Sum_probs=63.8

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhH----HHHHHcCccch-hhhhcccC--CCCCCccceEEec
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL----GVIYERGLIGI-YHDWCEAF--STYPRTYDLIHAH  250 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L----~~a~~Rgli~~-~~d~~e~l--~~yp~sFDlVha~  250 (334)
                      .....+|||+|||+|+++..|++.-.....|+++|.++.|+    ..+.+|..+.. ..|-....  ..++++||+|+++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            34568999999999999998887411012699999999875    34445432222 22211111  1224799999998


Q ss_pred             hhhccccCcCCHHHHH-HHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDIL-LEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L-~Em~RVLRPGG~lii~  282 (334)
                      ..+      .+...+| ..+.|+|||||.|+++
T Consensus       154 ~a~------~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          154 IAQ------PDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             CCC------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence            433      2344444 4566699999999987

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.18  E-value=1.5e-11  Score=105.18  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhh-hhcccCC--CC-CCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYH-DWCEAFS--TY-PRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~-d~~e~l~--~y-p~sFDlVh  248 (334)
                      ...+|||+|||+|.++..++.++.  ..|+++|.++.+++.+.++    ++   +..++ |..+.++  ++ +++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            457999999999999998887653  4799999999999877654    32   11222 2222111  12 48999999


Q ss_pred             echhhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeChh
Q 019879          249 AHGLFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEVD  286 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~~~  286 (334)
                      ++..|+.    .....++.++  .|+|||||.+++.....
T Consensus       122 ~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          122 LDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             ECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             ECCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            9877542    2356777777  99999999999987544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.18  E-value=2.6e-11  Score=116.84  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh-hhhcccCCCCCCccceEEechhhcccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY-HDWCEAFSTYPRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~-~d~~e~l~~yp~sFDlVha~~vfs~~~  257 (334)
                      ....+|||+|||+|.++..|+++... ..++++|. +.+++.+.+..-+... .|..   .++|. ||+|+++++|||+.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~---~~~~~-~D~v~~~~~lh~~~  281 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPPLSGIEHVGGDMF---ASVPQ-GDAMILKAVCHNWS  281 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCCTTEEEEECCTT---TCCCC-EEEEEEESSGGGSC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhhcCCCEEEeCCcc---cCCCC-CCEEEEecccccCC
Confidence            45689999999999999999886322 36788999 7888766543212221 1211   23455 99999999999875


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      + .....+|+++.|+|||||.|+|.|
T Consensus       282 d-~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          282 D-EKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             H-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3 223499999999999999999986

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.18  E-value=8.2e-12  Score=116.67  Aligned_cols=135  Identities=13%  Similarity=0.029  Sum_probs=77.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc----c-hhhhh--cccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI----G-IYHDW--CEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli----~-~~~d~--~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|+++..++++    ..|+++|+++ |+..+.++...    + .....  +.++..++ ++||+|+|+.+
T Consensus        75 g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~  149 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG  149 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc
Confidence            479999999999999999887    2589999985 64322222111    0 11111  22333344 89999999866


Q ss_pred             hccccCcC-CH---HHHHHHHHHhhcCCe--EEEEEeChh----hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          253 FSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDEVD----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       253 fs~~~~~c-~~---~~~L~Em~RVLRPGG--~lii~D~~~----~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                       ++..++. +.   ..+|.++.|+|||||  .|++.....    +++.++.+...+. .+.+...-.-....|.++++.+
T Consensus       150 -~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~  227 (265)
T 2oxt_A          150 -ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA  227 (265)
T ss_dssp             -CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred             -ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence             3322111 11   138999999999999  999975321    2233333322221 1222211111235688888754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.18  E-value=6.2e-11  Score=115.76  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhc-ccCCCCC-Ccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWC-EAFSTYP-RTY  244 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~-e~l~~yp-~sF  244 (334)
                      +..+......+|||+|||+|.++..+++... ...|+++|+++.+++.+.++    |+..  .....+ +.+.+++ ++|
T Consensus       215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~f  293 (375)
T 4dcm_A          215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF  293 (375)
T ss_dssp             HHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCE
T ss_pred             HHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCe
Confidence            3344444447999999999999999988631 14799999999999877654    3211  010011 1223455 899


Q ss_pred             ceEEechhhccccC--cCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHh
Q 019879          245 DLIHAHGLFSLYKD--KCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVG  296 (334)
Q Consensus       245 DlVha~~vfs~~~~--~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~  296 (334)
                      |+|+|+..|++...  ......++.++.|+|||||.+++..+..  +-..+++.+.
T Consensus       294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             EEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             eEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            99999988875321  2224578999999999999999975432  4445555544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.17  E-value=2.5e-11  Score=111.01  Aligned_cols=131  Identities=11%  Similarity=0.079  Sum_probs=84.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhc-ccCCCC-----CCccceE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWC-EAFSTY-----PRTYDLI  247 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~-e~l~~y-----p~sFDlV  247 (334)
                      .++|||+|||+|..+..|++.-.....|+++|+++.+++.+.++    |+.   ......+ +.++.+     +++||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            47999999999999999987411114699999999887755443    432   2222111 112222     4799999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHHH----hcccceEEEecCCCCC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKIV----GGMRWDTKMVDHEDGP  311 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~~----~~l~W~~~~~~~~~~~  311 (334)
                      ++...      ..+...++.++.|+|||||.|++.|..            .....++++.    ..-++.+.+...    
T Consensus       141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~----  210 (242)
T 3r3h_A          141 FIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI----  210 (242)
T ss_dssp             EEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS----
T ss_pred             EEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc----
Confidence            98743      234568999999999999999997532            1223344443    334555554322    


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                        .+.+++++|.
T Consensus       211 --~dG~~~~~k~  220 (242)
T 3r3h_A          211 --ADGMFLVQPI  220 (242)
T ss_dssp             --SSCEEEEEEC
T ss_pred             --cCceEEEEEc
Confidence              3568888874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.17  E-value=1.2e-10  Score=110.23  Aligned_cols=143  Identities=17%  Similarity=0.140  Sum_probs=89.1

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhcccCCC--CCCccce
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEAFST--YPRTYDL  246 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~l~~--yp~sFDl  246 (334)
                      .+..+|||+|||+|.++..+++.. .+..|+++|+++.+++.+.++-      +    +......+..++.  .+++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            345899999999999999998763 1357999999999999887653      1    1111111112221  2489999


Q ss_pred             EEechhhccccCcCCH--HHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceE-EEecC--CCCCCCCce
Q 019879          247 IHAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDT-KMVDH--EDGPLVPEK  316 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~--~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~-~~~~~--~~~~~~~e~  316 (334)
                      |+++....+... ..+  ..++.++.|+|||||.+++....     .....+.+.++...+.. ..+..  ..-+.+.-.
T Consensus       173 Ii~d~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~  251 (304)
T 3bwc_A          173 VIIDTTDPAGPA-SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG  251 (304)
T ss_dssp             EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred             EEECCCCccccc-hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence            999755443221 112  58999999999999999997543     23445555555555543 33221  111223456


Q ss_pred             EEEEEec
Q 019879          317 ILVAVKQ  323 (334)
Q Consensus       317 ~l~~~K~  323 (334)
                      ++++.|.
T Consensus       252 f~~as~~  258 (304)
T 3bwc_A          252 TLVCSKK  258 (304)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            8888886

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.17  E-value=2.3e-11  Score=121.28  Aligned_cols=124  Identities=11%  Similarity=0.056  Sum_probs=82.5

Q ss_pred             CCCCccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc--
Q 019879          148 PGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER--  224 (334)
Q Consensus       148 ~g~~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R--  224 (334)
                      ..++.+.|.+-..   ..   +..++..+......+|||+|||+|.++..++.. +.  ..|+|+|+++.++.+|.+.  
T Consensus       147 e~Fs~~vYGEt~~---~~---i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e  218 (438)
T 3uwp_A          147 EPFSPEVYGETSF---DL---VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDR  218 (438)
T ss_dssp             SSSCGGGGGGTHH---HH---HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHH
T ss_pred             ccCCCcccCCCCH---HH---HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHH
Confidence            3456666655443   22   233444444445689999999999999888753 43  2589999999998877641  


Q ss_pred             ---------Cc----cchhhhhcccCCCCC---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          225 ---------GL----IGIYHDWCEAFSTYP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       225 ---------gl----i~~~~d~~e~l~~yp---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                               |+    +.+.+.....+ +|+   .+||+|+++.++.    ..++...|.|+.|+|||||.|++.+.
T Consensus       219 ~frkr~~~~Gl~~~rVefi~GD~~~l-p~~d~~~~aDVVf~Nn~~F----~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          219 EFRKWMKWYGKKHAEYTLERGDFLSE-EWRERIANTSVIFVNNFAF----GPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HHHHHHHHHTBCCCEEEEEECCTTSH-HHHHHHHTCSEEEECCTTC----CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             HHHHHHHHhCCCCCCeEEEECcccCC-ccccccCCccEEEEccccc----CchHHHHHHHHHHcCCCCcEEEEeec
Confidence                     32    22222111111 232   4799999986652    23578899999999999999999874

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.15  E-value=5.5e-11  Score=115.01  Aligned_cols=100  Identities=17%  Similarity=0.166  Sum_probs=73.6

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh-hhhcccCCCCCCccceEEechhhccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY-HDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~-~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      .....+|||+|||+|.++..|+++... ..++++|. +.+++.+.++.-+... .|.   +.++|.. |+|+++++|||+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~~~p~~-D~v~~~~vlh~~  274 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPAFSGVEHLGGDM---FDGVPKG-DAIFIKWICHDW  274 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGB
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhhcCCCEEEecCC---CCCCCCC-CEEEEechhhcC
Confidence            345689999999999999999874211 35899999 6888766554322222 221   2245644 999999999987


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+ .+...+|+++.|+|||||.|+|.|.
T Consensus       275 ~~-~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          275 SD-EHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             CH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            53 3456899999999999999999874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.13  E-value=1.7e-10  Score=105.65  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----C-c---cchhhhhcccCCCCC-Cccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----G-L---IGIYHDWCEAFSTYP-RTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----g-l---i~~~~d~~e~l~~yp-~sFD  245 (334)
                      ......+|||+|||+|.++..|++. +. ...|+++|.++.+++.+.++     | +   +...+...... +++ ++||
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D  173 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVD  173 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEE
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCcee
Confidence            3334579999999999999999874 10 13799999999999887765     3 1   12222222222 354 8999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +|+++     ..   +...++.++.|+|||||.+++....
T Consensus       174 ~v~~~-----~~---~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          174 RAVLD-----ML---APWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             EEEEE-----SS---CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             EEEEC-----Cc---CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99884     22   3457899999999999999998764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.13  E-value=4.3e-11  Score=107.18  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhh-hhcccCCCC--CCccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYH-DWCEAFSTY--PRTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~-d~~e~l~~y--p~sFDlVha~  250 (334)
                      ..+|||+|||+|.++..|++... ...|+++|.++.+++.+.++    |+   +.... +..+.++..  +++||+|+++
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            47999999999999999987521 14799999999999988765    43   22222 211211222  4789999998


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ..++      +...++.++.|+|||||.+++.+
T Consensus       134 ~~~~------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          134 AAKG------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             GGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            6543      46789999999999999999985

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.13  E-value=6.2e-11  Score=102.41  Aligned_cols=137  Identities=13%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             CceEeeecccccHHHHHHHhC-CCc-------EEEEEeccCChhhHHHHHHcCccchh-h-hhccc------CCCCC-Cc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLW-------VMNVVPTLADKNTLGVIYERGLIGIY-H-DWCEA------FSTYP-RT  243 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~-------v~nVv~vD~s~~~L~~a~~Rgli~~~-~-d~~e~------l~~yp-~s  243 (334)
                      ..+|||+|||+|.++..|++. +..       ...|+++|.++.+ ..   .+ +... . |..+.      ...++ ++
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~~---~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-PL---EG-ATFLCPADVTDPRTSQRILEVLPGRR   97 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-CC---TT-CEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-cC---CC-CeEEEeccCCCHHHHHHHHHhcCCCC
Confidence            479999999999999999875 310       0369999999532 10   01 1111 1 11000      00134 68


Q ss_pred             cceEEechhhccccCc-CC-------HHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEec-CCCCCCC
Q 019879          244 YDLIHAHGLFSLYKDK-CN-------IEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVD-HEDGPLV  313 (334)
Q Consensus       244 FDlVha~~vfs~~~~~-c~-------~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~-~~~~~~~  313 (334)
                      ||+|+|+..++...++ .+       ...++.++.|+|||||.|++.+... ....+...++..--.+.... ....+..
T Consensus        98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~~~  177 (196)
T 2nyu_A           98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKES  177 (196)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC------
T ss_pred             CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCccC
Confidence            9999997544321111 01       1478999999999999999986432 22233333222211222221 1111224


Q ss_pred             CceEEEEEe
Q 019879          314 PEKILVAVK  322 (334)
Q Consensus       314 ~e~~l~~~K  322 (334)
                      .|.+++++.
T Consensus       178 ~e~~~v~~g  186 (196)
T 2nyu_A          178 SEVYFLATQ  186 (196)
T ss_dssp             --EEEEEEE
T ss_pred             ceEEEEeee
Confidence            678888764

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.12  E-value=1.9e-11  Score=114.89  Aligned_cols=97  Identities=13%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--------cchh--hhhcccCCCCCCccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--------IGIY--HDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--------i~~~--~d~~e~l~~yp~sFDlVha  249 (334)
                      ...+|||+|||+|+++..|++++    .|+++|+++ |+..+.++..        +...  ....+.++  +++||+|+|
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs  154 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQP----NVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC  154 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTST----TEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHcC----CEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence            35799999999999999998872    589999985 6433322221        1112  11122222  489999999


Q ss_pred             chhhccccCcC-CH---HHHHHHHHHhhcCCe--EEEEEeC
Q 019879          250 HGLFSLYKDKC-NI---EDILLEMDRILRPEG--AIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c-~~---~~~L~Em~RVLRPGG--~lii~D~  284 (334)
                      +.+ ++..+.. +.   ..+|.++.|+|||||  .|++...
T Consensus       155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            866 3221110 11   137999999999999  9998653

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.12  E-value=2.5e-10  Score=109.41  Aligned_cols=143  Identities=20%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha  249 (334)
                      .......+|||+|||+|+++..++........|+++|+++.+++.|.++    |+  +......+..+++...+||+|++
T Consensus       199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred             hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence            3444567999999999999988877420013589999999999987664    43  22232223334333377999999


Q ss_pred             chhhcccc-CcC----CHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEec-CCCCCCCCceEEEEEe
Q 019879          250 HGLFSLYK-DKC----NIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD-HEDGPLVPEKILVAVK  322 (334)
Q Consensus       250 ~~vfs~~~-~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~-~~~~~~~~e~~l~~~K  322 (334)
                      +--+.... +..    ....++.++.|+|||||.+++.....  ..++.+.+ ..|+..... ..+|.. .-.+++.+|
T Consensus       279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~~~~l~~g~l-~~~i~vl~r  353 (354)
T 3tma_A          279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRHARVVEQGGV-YPRVFVLEK  353 (354)
T ss_dssp             CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEEEEECCBTTB-CCEEEEEEE
T ss_pred             CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEEEEEEEeCCE-EEEEEEEEc
Confidence            75544211 011    12689999999999999999988765  23455555 777664322 233443 234555554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.12  E-value=4.2e-11  Score=114.44  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh-hhhcccCCCCCCccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY-HDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~-~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ...+|||+|||+|.++..|+++... ..++++|. +.+++.+.+..-+... .|..   .++|. ||+|+++++|||+.+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~---~~~p~-~D~v~~~~~lh~~~d  261 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSGSNNLTYVGGDMF---TSIPN-ADAVLLKYILHNWTD  261 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCBTTEEEEECCTT---TCCCC-CSEEEEESCGGGSCH
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhcccCCCcEEEecccc---CCCCC-ccEEEeehhhccCCH
Confidence            4579999999999999999875211 36899999 7888876543212221 2211   23444 999999999998753


Q ss_pred             cCCHHHHHHHHHHhhcC---CeEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRP---EGAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRP---GG~lii~D~  284 (334)
                       .+...+|+++.|+|||   ||.|+|.|.
T Consensus       262 -~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          262 -KDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             -HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             -HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence             2344999999999999   999999874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.12  E-value=2.2e-10  Score=103.21  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=86.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCC-------------C
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFS-------------T  239 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~-------------~  239 (334)
                      ..+|||+|||+|.++..|++.......|+++|.++.+++.+.++    |+.   .... +..+.++             .
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            47999999999999999987521124799999999999887765    331   1111 1111111             1


Q ss_pred             C--C-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHH----Hhcccc
Q 019879          240 Y--P-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKI----VGGMRW  300 (334)
Q Consensus       240 y--p-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~----~~~l~W  300 (334)
                      |  + ++||+|++.....      +...++.++.|+|||||.+++.+..            .....++.+    ...-++
T Consensus       141 f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV  214 (239)
T ss_dssp             TCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred             ccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence            1  2 6899999874432      3568999999999999999998621            122233333    445556


Q ss_pred             eEEEecCCCCCCCCceEEEEEecc
Q 019879          301 DTKMVDHEDGPLVPEKILVAVKQY  324 (334)
Q Consensus       301 ~~~~~~~~~~~~~~e~~l~~~K~~  324 (334)
                      .+.....      ...+.+++|.+
T Consensus       215 ~~~~~p~------~~g~~~~~~~~  232 (239)
T 2hnk_A          215 DVSLVPI------ADGVSLVRKRL  232 (239)
T ss_dssp             EEEEECS------TTCEEEEEECC
T ss_pred             EEEEEEc------CCceEeeeehh
Confidence            6665432      24588888875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.11  E-value=2.8e-10  Score=101.81  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=76.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCC-C-CccceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STY-P-RTYDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~y-p-~sFDlVha~~  251 (334)
                      ....+|||+|||+|.++..+++.+   ..|+++|.++.+++.+.++    |+.........++ ..+ + ++||+|+++ 
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-  165 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD-  165 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-
Confidence            345799999999999999998863   4799999999999988765    3211111111111 122 4 789999874 


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcc
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGM  298 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l  298 (334)
                          .   .+...++.++.|+|||||.+++.... +....+...+...
T Consensus       166 ----~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          166 ----V---REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             ----S---SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             ----C---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence                1   23467899999999999999999874 3555555555443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.11  E-value=9.9e-11  Score=103.95  Aligned_cols=96  Identities=15%  Similarity=0.059  Sum_probs=67.9

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcC----c-------cchhhhhcccCCCCCCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG----L-------IGIYHDWCEAFSTYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rg----l-------i~~~~d~~e~l~~yp~sFDlV  247 (334)
                      ...+|||+|||+|.++..|++. +.. ..|+++|.++.+++.+.++.    +       +..........++.+++||+|
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            4579999999999999998874 211 36999999999998876541    1       111111111111123789999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++...++++         +.++.|+|||||.+++....
T Consensus       156 ~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          156 HVGAAAPVV---------PQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             EECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence            998777553         35889999999999998754

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.11  E-value=1.2e-10  Score=108.42  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccC-ChhhHHHHHHcC---------c-------cch-hhhhcccCCC--
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA-DKNTLGVIYERG---------L-------IGI-YHDWCEAFST--  239 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~-s~~~L~~a~~Rg---------l-------i~~-~~d~~e~l~~--  239 (334)
                      ...+|||+|||+|.++..++..+.  ..|+++|. ++.++..+.++.         +       +.. ..+|.+....  
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            347999999999999999988763  36999999 899998776542         1       111 1223332111  


Q ss_pred             ---CCCccceEEechhhccccCcCCHHHHHHHHHHhhc---C--CeEEEEE
Q 019879          240 ---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILR---P--EGAIIIR  282 (334)
Q Consensus       240 ---yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLR---P--GG~lii~  282 (334)
                         .+++||+|+++.++.|.   .+...++.++.|+|+   |  ||.+++.
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~---~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFH---QAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCG---GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hhccCCCCCEEEEeCcccCh---HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence               13899999998888774   347899999999999   9  9976654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.11  E-value=2.2e-10  Score=101.66  Aligned_cols=132  Identities=16%  Similarity=0.084  Sum_probs=85.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhh-hhcccCCCCC-----Cccce
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYH-DWCEAFSTYP-----RTYDL  246 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~-d~~e~l~~yp-----~sFDl  246 (334)
                      ...+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+   +...+ +..+.++.++     ++||+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  148 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  148 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence            347999999999999999987411124799999999999887654    33   11111 1111111111     68999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHH----HhcccceEEEecCCCC
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKI----VGGMRWDTKMVDHEDG  310 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~----~~~l~W~~~~~~~~~~  310 (334)
                      |++...      ......++.++.|+|||||.+++.+..            .....++++    ...-++.+.....   
T Consensus       149 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~---  219 (229)
T 2avd_A          149 AVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL---  219 (229)
T ss_dssp             EEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS---
T ss_pred             EEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec---
Confidence            998632      235678999999999999999996531            122334443    3444566655432   


Q ss_pred             CCCCceEEEEEec
Q 019879          311 PLVPEKILVAVKQ  323 (334)
Q Consensus       311 ~~~~e~~l~~~K~  323 (334)
                         .+.+++++|.
T Consensus       220 ---~dGl~~~~k~  229 (229)
T 2avd_A          220 ---GDGLTLAFKI  229 (229)
T ss_dssp             ---TTCEEEEEEC
T ss_pred             ---CCceEEEEEC
Confidence               3458888873

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.11  E-value=1e-10  Score=109.76  Aligned_cols=131  Identities=14%  Similarity=0.218  Sum_probs=88.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhh-hhcccCCCCCCcc---ceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYH-DWCEAFSTYPRTY---DLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~-d~~e~l~~yp~sF---DlVha  249 (334)
                      ..+|||+|||+|.++..|+..+  ..+|+++|+|+.++..+.++    |+   +..++ |+.+   +++++|   |+|++
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~---~~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---PFKEKFASIEMILS  198 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG---GGGGGTTTCCEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh---hcccccCCCCEEEE
Confidence            3589999999999999998762  24799999999999987764    33   12222 2222   233689   99999


Q ss_pred             chhhc-----------cccC-----cCCHHHHHHHHH-HhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCC
Q 019879          250 HGLFS-----------LYKD-----KCNIEDILLEMD-RILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPL  312 (334)
Q Consensus       250 ~~vfs-----------~~~~-----~c~~~~~L~Em~-RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~  312 (334)
                      +--+.           |.+.     .++-..+++++. +.|+|||++++.-..+.-+.+.+++...   ....|..    
T Consensus       199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~----  271 (284)
T 1nv8_A          199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSA----  271 (284)
T ss_dssp             CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTT----
T ss_pred             cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccC----
Confidence            71111           1110     011227899999 9999999999987666666677766655   2233332    


Q ss_pred             CCceEEEEEec
Q 019879          313 VPEKILVAVKQ  323 (334)
Q Consensus       313 ~~e~~l~~~K~  323 (334)
                      +.+++++++++
T Consensus       272 g~~R~~~~~~k  282 (284)
T 1nv8_A          272 GKYRFLLLNRR  282 (284)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCceEEEEEEc
Confidence            47888888764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.11  E-value=2.5e-10  Score=108.54  Aligned_cols=125  Identities=14%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEec
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      ......+|||+|||+|+++..|++...-...|+++|+++.++..+.++    |+  +...+..+..++.++++||+|+++
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            344457999999999999999987411113699999999999887665    43  222222233333345789999985


Q ss_pred             h------hhccccC----c--CC-------HHHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhcccce
Q 019879          251 G------LFSLYKD----K--CN-------IEDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGGMRWD  301 (334)
Q Consensus       251 ~------vfs~~~~----~--c~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~l~W~  301 (334)
                      .      ++.+.++    +  .+       ...+|.++.|+|||||.+++++..    +.-..++.+++...++
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~  268 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  268 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence            2      2322111    0  00       148999999999999999997642    2233455555554443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.11  E-value=7.2e-11  Score=114.13  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh-hhhcccCCCCCCccceEEechhhccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY-HDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~-~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      .....+|||+|||+|.++..|+++... ..++.+|. +.+++.+.++.-+... .|.   +.++|.. |+|+++++||++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~D~---~~~~p~~-D~v~~~~vlh~~  272 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQFPGVTHVGGDM---FKEVPSG-DTILMKWILHDW  272 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGS
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhhcCCeEEEeCCc---CCCCCCC-CEEEehHHhccC
Confidence            445689999999999999999874211 35799999 6887766554322222 221   1245644 999999999987


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+ .+...+|++++|+|||||.|+|.|.
T Consensus       273 ~d-~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          273 SD-QHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             CH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            53 3567899999999999999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.10  E-value=5.3e-10  Score=97.55  Aligned_cols=111  Identities=10%  Similarity=-0.022  Sum_probs=73.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCCCccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ...+|||+|||+|.++..++..+.  ..|+++|+++.+++.+.++-. +.......+.   ++++||+|+++..|+|..+
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE---ISGKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG---CCCCEEEEEECCCC-----
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEECcHHH---CCCCeeEEEECCCchhccC
Confidence            457999999999999999988753  369999999999998887631 2222221222   3589999999999988753


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhccc
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMR  299 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~  299 (334)
                      . ....++.++.|+|  |+.+++.+ ......+.+.+....
T Consensus       126 ~-~~~~~l~~~~~~~--g~~~~~~~-~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          126 H-SDRAFIDKAFETS--MWIYSIGN-AKARDFLRREFSARG  162 (200)
T ss_dssp             ---CHHHHHHHHHHE--EEEEEEEE-GGGHHHHHHHHHHHE
T ss_pred             c-hhHHHHHHHHHhc--CcEEEEEc-CchHHHHHHHHHHCC
Confidence            2 2357899999999  66555544 333455555544443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.10  E-value=7.1e-11  Score=111.77  Aligned_cols=106  Identities=14%  Similarity=0.069  Sum_probs=71.0

Q ss_pred             CCCCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c----cchhh-hhccc---CC-CC-CCc
Q 019879          178 SGRYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L----IGIYH-DWCEA---FS-TY-PRT  243 (334)
Q Consensus       178 ~~~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l----i~~~~-d~~e~---l~-~y-p~s  243 (334)
                      ...++.|||+|||+  +++...++++-.-...|+++|.|+.||..++++-  .    +...+ |..+.   +. +. .++
T Consensus        76 ~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           76 EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence            34578999999997  4444444332000146999999999999877651  1    11111 11110   00 00 145


Q ss_pred             cc-----eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YD-----LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FD-----lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||     .|+++.+|||+.+..++..+|.++.+.|+|||+|++++
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            55     58899999999876668899999999999999999995

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.09  E-value=9.6e-11  Score=118.10  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYD  245 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFD  245 (334)
                      +..+......+|||+|||+|.++..+++.+.  ..|+++|.|+ |++.|.++    |+   +...+...+.+ +++++||
T Consensus       151 l~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD  226 (480)
T 3b3j_A          151 LQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVD  226 (480)
T ss_dssp             HHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEE
T ss_pred             HHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeE
Confidence            3334333457999999999999999988753  3799999996 88766553    43   22222222222 3568899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +|+|+.+++|+.+ .++...+.++.|+|||||.+++
T Consensus       227 ~Ivs~~~~~~~~~-e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          227 IIISEPMGYMLFN-ERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEECCCCHHHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEeCchHhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence            9999988777542 3456788899999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.09  E-value=2.7e-10  Score=106.55  Aligned_cols=139  Identities=17%  Similarity=0.113  Sum_probs=85.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-----c-----------cchhhhhccc-CCCCCC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-----L-----------IGIYHDWCEA-FSTYPR  242 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-----l-----------i~~~~d~~e~-l~~yp~  242 (334)
                      ...+|||+|||+|.++..+++.+  ..+|+++|+++.+++.+.++-     +           +......+.. +.. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            45799999999999999998874  357999999999999887652     1           0111111111 112 67


Q ss_pred             ccceEEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEEEecC--CCCCCC
Q 019879          243 TYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTKMVDH--EDGPLV  313 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~~~~~--~~~~~~  313 (334)
                      +||+|+++...+ ......  ...++.++.|+|||||.+++...     .+.+..+.+.++..--.+..+..  ..+ .+
T Consensus       152 ~fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g  229 (281)
T 1mjf_A          152 GFDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-AS  229 (281)
T ss_dssp             CEEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SS
T ss_pred             CeeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-Cc
Confidence            899999874432 111111  26789999999999999999742     22334444443333222332211  111 13


Q ss_pred             CceEEEEEec
Q 019879          314 PEKILVAVKQ  323 (334)
Q Consensus       314 ~e~~l~~~K~  323 (334)
                      .-.++++.|.
T Consensus       230 ~~~~~~as~~  239 (281)
T 1mjf_A          230 PWAFLVGVKG  239 (281)
T ss_dssp             SEEEEEEEES
T ss_pred             eEEEEEeeCC
Confidence            4668888886

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.08  E-value=1e-10  Score=105.18  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC--CccceEE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP--RTYDLIH  248 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp--~sFDlVh  248 (334)
                      ......+|||+|||+|.++..|++...  ..|+++|.++.+++.+.++    |+  +.......  ..+++  ..||+|+
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~Ii  163 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFPPKAPYDVII  163 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCGGGCCEEEEE
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc--ccCCCCCCCccEEE
Confidence            333457999999999999999988532  4699999999999887765    32  11111111  12344  4599999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      ++.+++++.         .++.|+|||||.+++.....
T Consensus       164 ~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          164 VTAGAPKIP---------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ECSBBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred             ECCcHHHHH---------HHHHHhcCCCcEEEEEEecC
Confidence            998887654         37899999999999987643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.08  E-value=3.1e-10  Score=102.43  Aligned_cols=131  Identities=13%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCC--C-C--CccceE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFST--Y-P--RTYDLI  247 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~--y-p--~sFDlV  247 (334)
                      ..+|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+.   .... +..+.++.  . +  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            46999999999999999987511114799999999999887654    331   1111 11111111  1 2  789999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHH----HhcccceEEEecCCCCC
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKI----VGGMRWDTKMVDHEDGP  311 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~----~~~l~W~~~~~~~~~~~  311 (334)
                      ++....      .+...++.++.|+|||||.+++.+..            .....++++    ...-++.+.....    
T Consensus       153 ~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~----  222 (232)
T 3cbg_A          153 FIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL----  222 (232)
T ss_dssp             EECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS----
T ss_pred             EECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc----
Confidence            987432      34678999999999999999997532            122334444    3444566655432    


Q ss_pred             CCCceEEEEEec
Q 019879          312 LVPEKILVAVKQ  323 (334)
Q Consensus       312 ~~~e~~l~~~K~  323 (334)
                        .+.+.+++|.
T Consensus       223 --~dG~~~~~~~  232 (232)
T 3cbg_A          223 --GDGMTLALKK  232 (232)
T ss_dssp             --BTCEEEEEEC
T ss_pred             --CCeEEEEEeC
Confidence              3458888773

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.07  E-value=5.1e-10  Score=103.17  Aligned_cols=114  Identities=12%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCC-CccceE
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      ......+|||+|||+|.++..|++. +. ..+|+++|.++.+++.+.++    |+   +.........  .++ ++||+|
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~V  185 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE--GFDEKDVDAL  185 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG--CCSCCSEEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH--cccCCccCEE
Confidence            3344579999999999999999875 21 14799999999999987765    33   1111111112  255 789999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccce
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWD  301 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~  301 (334)
                      +++     .   .+...++.++.|+|||||.+++.+... .+.++.+.+....|.
T Consensus       186 ~~~-----~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~  232 (277)
T 1o54_A          186 FLD-----V---PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  232 (277)
T ss_dssp             EEC-----C---SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             EEC-----C---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            885     1   234578999999999999999998753 455555555555554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.06  E-value=2.5e-10  Score=108.39  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc-----------------cchhh-hhcccCCC
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL-----------------IGIYH-DWCEAFST  239 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl-----------------i~~~~-d~~e~l~~  239 (334)
                      ....+|||+|||+|.++..|+.. +.. ..|+++|.++.+++.+.++.-                 +...+ |..+...+
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            34579999999999999999875 321 369999999999998776421                 11222 22221224


Q ss_pred             CC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          240 YP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       240 yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++ ++||+|+++..        +...++.++.|+|||||.|++....
T Consensus       183 ~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          183 IKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -----EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            55 78999998621        1234889999999999999988764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.05  E-value=1.9e-10  Score=102.15  Aligned_cols=97  Identities=18%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCC----cEEEEEeccCChhhHHHHHHc----Cc-------cchhhhhcccCCC---CC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GL-------IGIYHDWCEAFST---YP  241 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v----~v~nVv~vD~s~~~L~~a~~R----gl-------i~~~~d~~e~l~~---yp  241 (334)
                      ...+|||+|||+|.++..|++...    -...|+++|.++.+++.+.++    ++       +...........+   ++
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  159 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence            347999999999999999987531    113699999999999887765    21       1111111111110   33


Q ss_pred             -CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          242 -RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       242 -~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                       ++||+|++...++++         +.++.++|||||.+++.-..
T Consensus       160 ~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          160 LGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEcc
Confidence             889999999777653         46889999999999998653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.05  E-value=4.8e-11  Score=113.58  Aligned_cols=98  Identities=14%  Similarity=0.033  Sum_probs=61.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccC----ChhhHHHHHHc--Cccchhhhhcc-cCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLA----DKNTLGVIYER--GLIGIYHDWCE-AFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~----s~~~L~~a~~R--gli~~~~d~~e-~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|+++..|++++    .|+++|+    ++.++..+..+  |... ....+. ++..++ .+||+|+|+..
T Consensus        83 g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~D~~~l~~~~fD~V~sd~~  157 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNL-VRLQSGVDVFFIPPERCDTLLCDIG  157 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGG-EEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCC-eEEEeccccccCCcCCCCEEEECCc
Confidence            4799999999999999999873    4788887    44443211111  1111 111112 233344 89999999876


Q ss_pred             hc--c-ccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          253 FS--L-YKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       253 fs--~-~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++  | ..+......+|.++.|+|||||.|++..
T Consensus       158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            64  1 1111111258999999999999999964

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.03  E-value=9.3e-10  Score=103.80  Aligned_cols=144  Identities=11%  Similarity=0.003  Sum_probs=84.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp~sFDlVh  248 (334)
                      ...+|||+|||+|.++..+++.. .+.+|+++|+++.+++.+.++-      +    +......+.. +...+++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            45899999999999999999862 1257999999999999887642      1    1111111111 222348899999


Q ss_pred             echhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecC--CCCCCCCceEEE
Q 019879          249 AHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILV  319 (334)
Q Consensus       249 a~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~--~~~~~~~e~~l~  319 (334)
                      ++...+......  ....++.++.|+|||||.+++....     +....+.+.+++.--.+..+..  ..-|.+.-.+++
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~  248 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF  248 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence            863221011000  1268999999999999999997432     2223333333332223332221  111123456888


Q ss_pred             EEecc
Q 019879          320 AVKQY  324 (334)
Q Consensus       320 ~~K~~  324 (334)
                      |.|++
T Consensus       249 as~~~  253 (296)
T 1inl_A          249 ASKGI  253 (296)
T ss_dssp             EESSC
T ss_pred             ecCCC
Confidence            98873

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.03  E-value=4.1e-09  Score=92.05  Aligned_cols=116  Identities=15%  Similarity=0.108  Sum_probs=81.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cchhhhhcccCCCCCCccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ...+|||+|||+|.++..+++.+.  ..|+++|+++.+++.+.++-    + +...+.   ++..++.+||+|+++..|+
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~~~~D~v~~~~p~~  123 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIG---DVSEFNSRVDIVIMNPPFG  123 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEES---CGGGCCCCCSEEEECCCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEEC---chHHcCCCCCEEEEcCCCc
Confidence            457999999999999999998753  26999999999999887752    1 122222   2223457999999998776


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHhcccceEE
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~~l~W~~~  303 (334)
                      +... .....++.++.|+|  ||.+++.- .....+.+.+.+....+++.
T Consensus       124 ~~~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  170 (207)
T 1wy7_A          124 SQRK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVT  170 (207)
T ss_dssp             SSST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             cccC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence            6432 23467899999999  66555542 44455666666666666554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.03  E-value=4.7e-10  Score=110.13  Aligned_cols=98  Identities=16%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc---cchhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL---IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl---i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++...++.|+.  .|+++|.| +|+..|.+    .|+   +..++...+.+ .+|..||+|+|..+-
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~  159 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMG  159 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCB
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeeccc
Confidence            478999999999998887877753  58999998 57765543    354   33333333443 456899999996544


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.+.....+..++...+|.|||||.++-+
T Consensus       160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          160 YGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccccchhhhHHHHHHhhCCCCceECCc
Confidence            44444446889999999999999998754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.02  E-value=1.1e-09  Score=102.36  Aligned_cols=143  Identities=14%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCCCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp~sFDlV  247 (334)
                      +.++|||+|||+|.++..+++. ++  ..|+.+|+++.+++.+++.-      +    +..+...+.. +...+++||+|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            4689999999999999999886 33  57999999999999887642      2    1111111111 12224899999


Q ss_pred             EechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecC--CCCCCCCceEEE
Q 019879          248 HAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILV  319 (334)
Q Consensus       248 ha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~--~~~~~~~e~~l~  319 (334)
                      ++....+.... .-....++.++.|+|||||.+++....     +.+..+.+.+++.=-.+..+..  ..-+.+.-.+++
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~  232 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI  232 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence            99744322110 001257999999999999999998532     2334444444444223333221  111113457888


Q ss_pred             EEecc
Q 019879          320 AVKQY  324 (334)
Q Consensus       320 ~~K~~  324 (334)
                      +.|++
T Consensus       233 ask~~  237 (275)
T 1iy9_A          233 GSKKY  237 (275)
T ss_dssp             EESSC
T ss_pred             eeCCC
Confidence            99874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.02  E-value=1.2e-09  Score=102.41  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhhhhccc-CCCCCCccceE
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYHDWCEA-FSTYPRTYDLI  247 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~d~~e~-l~~yp~sFDlV  247 (334)
                      .+..+|||+|||+|.++..+++.. .+.+|+++|+++.+++.+.++--          +......+.. +...+++||+|
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            346899999999999999998763 23579999999999998877521          0111111111 11125899999


Q ss_pred             EechhhccccCcCCH--HHHHHHHHHhhcCCeEEEEEeC
Q 019879          248 HAHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       248 ha~~vfs~~~~~c~~--~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++....++.. ...+  ..++.++.|+|||||.+++...
T Consensus       156 i~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          156 IVDSSDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEECCCTTTG-GGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEcCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            9964332211 1122  6899999999999999999853

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.01  E-value=1.3e-09  Score=104.83  Aligned_cols=144  Identities=12%  Similarity=0.074  Sum_probs=94.9

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC---ccchhhhhcccCCCCC-CccceEEec
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG---LIGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg---li~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      .++....++|+|+|||+|.++..|+++... +.++..|. +.+++.+.++-   ....+.....+|...| ..+|++++.
T Consensus       174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~  251 (353)
T 4a6d_A          174 AFDLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILA  251 (353)
T ss_dssp             SSCGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEE
T ss_pred             hcCcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEee
Confidence            344556789999999999999999885322 35677887 47888877642   1111111112222223 568999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh--------------h------------hHHHHHHHHhcccceEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV--------------D------------EIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~--------------~------------~~~~i~~~~~~l~W~~~~  304 (334)
                      ++||++.+ .+...+|+++.|.|+|||.++|.|..              +            ..++.++++..-.|+...
T Consensus       252 ~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~  330 (353)
T 4a6d_A          252 RVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ  330 (353)
T ss_dssp             SSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred             eecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence            99998753 34568999999999999999998741              0            124456667777776543


Q ss_pred             ecCCCCCCCCceEEEEEecc
Q 019879          305 VDHEDGPLVPEKILVAVKQY  324 (334)
Q Consensus       305 ~~~~~~~~~~e~~l~~~K~~  324 (334)
                      .....+   ...+++++|..
T Consensus       331 v~~~~~---~~~~i~ArKgt  347 (353)
T 4a6d_A          331 FKKTGA---IYDAILARKGT  347 (353)
T ss_dssp             EECCSS---SCEEEEEECCC
T ss_pred             EEEcCC---ceEEEEEEecC
Confidence            322222   34688999853

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.01  E-value=8.8e-11  Score=120.15  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=73.2

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CC-CCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TY-PRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~y-p~sFDlVha~~  251 (334)
                      +..+|||+|||.|.++..|++.|+   +|+|+|.++.++++|+.+    |.  +...+..+|++. .+ +++||+|+|..
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            346999999999999999999985   699999999999987653    42  222222233331 24 48999999999


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+|+.+...+ ..+..+.+.|+++|..++..
T Consensus       143 ~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          143 VFHHIVHLHGI-DEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             CHHHHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred             chhcCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence            99998753332 33456888899998766653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.01  E-value=7.1e-10  Score=105.96  Aligned_cols=102  Identities=11%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp~sFDlVh  248 (334)
                      ..++|||+|||+|.++..+++.. .+..|+++|+++.+++.++++-      +    +......+.. +...+++||+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45899999999999999998763 1357999999999999888752      1    1111111111 111248999999


Q ss_pred             echhhccccCcCCH--HHHHHHHHHhhcCCeEEEEEe
Q 019879          249 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       249 a~~vfs~~~~~c~~--~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++.. .+......+  ..++.++.|+|||||.+++..
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8743 322111122  689999999999999999975

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.01  E-value=1.2e-09  Score=104.54  Aligned_cols=143  Identities=16%  Similarity=0.146  Sum_probs=87.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----------cchhh-hhcccCCCCCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----------IGIYH-DWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----------i~~~~-d~~e~l~~yp~sFDlVh  248 (334)
                      +..+|||+|||+|.++..+++.. .+..|+++|+++.+++.+.++--          +.... |..+.+...+++||+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            45799999999999999998762 12579999999999998877521          11111 11111111248899999


Q ss_pred             echhhccccCcCCH--HHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecC--CCCCCCCceEEE
Q 019879          249 AHGLFSLYKDKCNI--EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKILV  319 (334)
Q Consensus       249 a~~vfs~~~~~c~~--~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~--~~~~~~~e~~l~  319 (334)
                      ++.. .+......+  ..++.++.|+|||||.+++....     +.+..+.+.++..--.+..+..  ...+.+.-.+++
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~  273 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC  273 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence            8742 221111111  68999999999999999996432     2334444444444333433321  111112234788


Q ss_pred             EEecc
Q 019879          320 AVKQY  324 (334)
Q Consensus       320 ~~K~~  324 (334)
                      |.|.+
T Consensus       274 as~~~  278 (321)
T 2pt6_A          274 CSKTD  278 (321)
T ss_dssp             EESST
T ss_pred             eeCCC
Confidence            88864

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.00  E-value=2.4e-10  Score=104.83  Aligned_cols=98  Identities=14%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhc-ccCCCC------CCccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWC-EAFSTY------PRTYD  245 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~-e~l~~y------p~sFD  245 (334)
                      ..++|||+|||+|.++..|++.-.....|+++|.++.+++.+.++    |+   +......+ +.++.+      +++||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            357999999999999999887410014799999999999887654    43   11221111 112222      47899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|++...      ..+...++.++.|+|||||.|++.+
T Consensus       159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9998732      2346789999999999999999875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.00  E-value=2.2e-10  Score=109.63  Aligned_cols=98  Identities=16%  Similarity=0.226  Sum_probs=70.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh-hhhcccCCCCCCccceEEechhhccccC
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY-HDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~-~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ...+|||+|||+|.++..|+++... ..++++|. +.+++.+.+..-+... .|..   .++| +||+|+++++|||+.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~---~~~~-~~D~v~~~~vlh~~~d  266 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTGNENLNFVGGDMF---KSIP-SADAVLLKWVLHDWND  266 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCCCSSEEEEECCTT---TCCC-CCSEEEEESCGGGSCH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhcccCCCcEEEeCccC---CCCC-CceEEEEcccccCCCH
Confidence            3579999999999999999885321 35788998 5787665432112211 1211   2344 5999999999998753


Q ss_pred             cCCHHHHHHHHHHhhcC---CeEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRP---EGAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRP---GG~lii~D~  284 (334)
                       .+...+|+++.|+|||   ||.++|.|.
T Consensus       267 -~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          267 -EQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             -HHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             -HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence             2345999999999999   999999763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.00  E-value=9.9e-10  Score=99.71  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCC------CCccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTY------PRTYD  245 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~y------p~sFD  245 (334)
                      +.++|||+|||+|..+..|++.-.....|+++|.++.+++.+.++    |+.   .... +..+.++.+      +++||
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            357999999999999999887410014799999999999887653    431   1111 111111222      47899


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|++...      ..+...++.++.|+|||||.+++.+
T Consensus       150 ~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          150 FGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            9998632      2246789999999999999999975

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.99  E-value=4.9e-10  Score=111.96  Aligned_cols=103  Identities=11%  Similarity=0.078  Sum_probs=71.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHH-------HHc----Cc-cchhhhhc-ccCC---
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVI-------YER----GL-IGIYHDWC-EAFS---  238 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a-------~~R----gl-i~~~~d~~-e~l~---  238 (334)
                      +......+|||+|||+|.++..|+.. +.  ..|+++|.++.++..|       .++    |+ ...+.-.+ .++.   
T Consensus       238 l~l~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            33345679999999999999999874 32  3699999999888777       443    32 11111101 1221   


Q ss_pred             CC---CCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          239 TY---PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       239 ~y---p~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++   .++||+|+++.++. .   .++..+|.|+.|+|||||.+++.+.
T Consensus       316 ~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          316 RVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             HHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEeec
Confidence            12   37899999976552 1   3467889999999999999999863

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.99  E-value=1.1e-09  Score=104.03  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCCCccceE
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYPRTYDLI  247 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp~sFDlV  247 (334)
                      ...++|||+|||+|.++..|++.. .+..|+.+|+++.+++.+.++-      +    +......+.. ++..+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            345899999999999999998863 1357999999999999887641      1    1111111111 22234899999


Q ss_pred             EechhhccccCc-CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          248 HAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       248 ha~~vfs~~~~~-c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +++...+..... -....++.++.|+|||||.+++..
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            997433211100 012478999999999999999976

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.98  E-value=5.2e-10  Score=99.88  Aligned_cols=95  Identities=18%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             CCceEeeecccccHHHHHHHhC-CC----cEEEEEeccCChhhHHHHHHcCc-----------cchhhhhcccCCCCC--
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KL----WVMNVVPTLADKNTLGVIYERGL-----------IGIYHDWCEAFSTYP--  241 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v----~v~nVv~vD~s~~~L~~a~~Rgl-----------i~~~~d~~e~l~~yp--  241 (334)
                      ...+|||+|||+|.+++.|++. +.    ....|+++|.++.+++.+.++.-           +.........  .++  
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~  161 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--GYPPN  161 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--CCGGG
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc--CCCcC
Confidence            3479999999999999988873 20    00269999999999988766421           1111111111  233  


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++||+|++...++++.         .++.|+|||||.+++.-..
T Consensus       162 ~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence            7899999998887643         6899999999999998654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.97  E-value=1.6e-10  Score=104.72  Aligned_cols=102  Identities=12%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhccc--CCCCC----Cccce
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEA--FSTYP----RTYDL  246 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~--l~~yp----~sFDl  246 (334)
                      ...+|||+|||+|.++..|+.+. ....|+++|+++.|++.|.++    |+   +..++..++.  +.+++    ++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            35699999999999998887641 014699999999999987664    33   2222221222  11343    58999


Q ss_pred             EEechhhcccc-C-----------cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLYK-D-----------KCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~~-~-----------~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |+|+..+++.. .           ......++.++.|+|||||.+.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            99985554322 0           011124567788888888766554

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.97  E-value=8.9e-10  Score=102.37  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCCCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.|+..++.... ...|+++|.++.+++.+.++    |+  +..+...++.+ +.+++||+|+++... 
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~-  196 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH-  196 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS-
T ss_pred             CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc-
Confidence            47999999999999999988631 23699999999999877653    33  12222223334 335789999987432 


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                            ....++.++.|+|||||.+++++.
T Consensus       197 ------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence                  456789999999999999999865

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.96  E-value=5e-09  Score=97.54  Aligned_cols=131  Identities=13%  Similarity=0.064  Sum_probs=83.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhcccCCCCCCccceEE
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~l~~yp~sFDlVh  248 (334)
                      .+.++|||+|||+|+++..+++.+   ..|+.+|+++.+++.+.++-      +    +......+..   +.++||+|+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~---~~~~fD~Ii  144 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL---DIKKYDLIF  144 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS---CCCCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH---HHhhCCEEE
Confidence            346899999999999999998873   57999999999998876541      0    1111111111   228899999


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecCCCCCC-CCceEEEEEe
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHEDGPL-VPEKILVAVK  322 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~~~~~~-~~e~~l~~~K  322 (334)
                      +..        .+...++.++.|+|||||.+++....     +.+..+.+.++.. +.........-|. +.-.+++|.|
T Consensus       145 ~d~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~  215 (262)
T 2cmg_A          145 CLQ--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASF  215 (262)
T ss_dssp             ESS--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEES
T ss_pred             ECC--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeC
Confidence            861        12345899999999999999996422     2233333334433 3332222222222 2344778888


Q ss_pred             cc
Q 019879          323 QY  324 (334)
Q Consensus       323 ~~  324 (334)
                      .+
T Consensus       216 ~~  217 (262)
T 2cmg_A          216 KT  217 (262)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.96  E-value=7.7e-10  Score=106.65  Aligned_cols=103  Identities=14%  Similarity=0.159  Sum_probs=71.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhh-hhcccCCCCC-Cccce
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYH-DWCEAFSTYP-RTYDL  246 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~-d~~e~l~~yp-~sFDl  246 (334)
                      ...++|||+|||+|.++..|++.. .+..|+++|+++.+++.+.++-      +    +.... |..+.++.++ ++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            346899999999999999998863 1357999999999999887642      1    11111 2111122344 89999


Q ss_pred             EEechhhccc-cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLY-KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~-~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |+++...... ...-....++.++.|+|||||.|++.
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9997432111 11111368999999999999999997

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.96  E-value=4.8e-10  Score=107.75  Aligned_cols=121  Identities=17%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhhhhcccCCCC----CCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYHDWCEAFSTY----PRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~d~~e~l~~y----p~sFDlV  247 (334)
                      ...+|||+|||+|.++..++..+.   .|+++|+|+.+++.+.++    |+.    ..+...+..+...    .++||+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            346899999999999999998874   799999999999987664    321    1222212222111    3689999


Q ss_pred             Eechh-hccc------cCcCCHHHHHHHHHHhhcCCeEEEEEeCh------h-hHHHHHHHHhcccceEE
Q 019879          248 HAHGL-FSLY------KDKCNIEDILLEMDRILRPEGAIIIRDEV------D-EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       248 ha~~v-fs~~------~~~c~~~~~L~Em~RVLRPGG~lii~D~~------~-~~~~i~~~~~~l~W~~~  303 (334)
                      +++-- |...      ....+...++.++.|+|||||.|++....      + ..+.+++.+.....++.
T Consensus       230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            98522 1110      00123578999999999999997776421      1 22334444555555543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.95  E-value=2.5e-09  Score=103.68  Aligned_cols=117  Identities=13%  Similarity=0.013  Sum_probs=80.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhccc-CCC-CCCccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEA-FST-YPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~-l~~-yp~sFDlVha~~  251 (334)
                      ...+|||+| |+|.++..++..+.. ..|+++|+++.|++.+.++    |+  +......... ++. ++++||+|+++.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            357999999 999999999876421 3699999999999988765    44  2222222222 432 236999999997


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCe-EEEEEeCh--hhH---HHHHHHHh-cccceE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEG-AIIIRDEV--DEI---IKVKKIVG-GMRWDT  302 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG-~lii~D~~--~~~---~~i~~~~~-~l~W~~  302 (334)
                      .+++.    ....++.++.|+||||| .++++...  ...   ..+.+++. .....+
T Consensus       250 p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          250 PETLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             CSSHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             CCchH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            66542    25789999999999999 44555443  222   45566655 555543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.94  E-value=1.4e-09  Score=103.34  Aligned_cols=142  Identities=12%  Similarity=0.036  Sum_probs=87.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-------c----cchhhhhccc-CCCCCCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-------L----IGIYHDWCEA-FSTYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-------l----i~~~~d~~e~-l~~yp~sFDlV  247 (334)
                      ...+|||+|||+|.++..+++.. .+..|+++|+++.+++.+.++-       +    +......+.. +...+++||+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            45899999999999999998862 1357999999999999887642       1    1111111111 11124899999


Q ss_pred             Eechhhcc---ccC-cCCHHHHHHHHHHhhcCCeEEEEEeC------hhhHHHHHHHHhcccceEEEecC--CCCCCCCc
Q 019879          248 HAHGLFSL---YKD-KCNIEDILLEMDRILRPEGAIIIRDE------VDEIIKVKKIVGGMRWDTKMVDH--EDGPLVPE  315 (334)
Q Consensus       248 ha~~vfs~---~~~-~c~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~~~~~l~W~~~~~~~--~~~~~~~e  315 (334)
                      +++...+.   ... .-....++.++.|+|||||.+++...      .+....+.+.++..--.+..+..  ... .+.-
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~-~g~~  234 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGF-FLNF  234 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGG-TEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CCeE
Confidence            99854432   110 00136899999999999999998732      12344444444444223322211  101 1234


Q ss_pred             eEEEEEec
Q 019879          316 KILVAVKQ  323 (334)
Q Consensus       316 ~~l~~~K~  323 (334)
                      .+++|.|.
T Consensus       235 ~~~~as~~  242 (314)
T 1uir_A          235 GFLLASDA  242 (314)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            57888886

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.93  E-value=7.1e-10  Score=102.89  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC----CCccce
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY----PRTYDL  246 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y----p~sFDl  246 (334)
                      ......+|||+|||+|+++..|++.-.-...|+++|.++.+++.+.++    |+  +...+.....++..    +++||+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence            334457999999999999999987310113699999999999877664    43  11222112222221    478999


Q ss_pred             EEech------hhccc--------c-CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHG------LFSLY--------K-DKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~------vfs~~--------~-~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+++.      ++.+.        . .......+|.++.|+|||||.+++++.
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            99872      22110        0 012357899999999999999999863

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.91  E-value=5.2e-09  Score=99.36  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             CCceEeeecc------cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch-hhhhcccCCCCCCccceEEech
Q 019879          180 RYRNIMDMNA------GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GC------G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d~~e~l~~yp~sFDlVha~~  251 (334)
                      ...+|||+||      |+|+  ..+++ .+. ...|+++|+++. +     .+ +.. .+..+..+ +++++||+|+|+.
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~-~~~V~gvDis~~-v-----~~-v~~~i~gD~~~~-~~~~~fD~Vvsn~  131 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPT-GTLLVDSDLNDF-V-----SD-ADSTLIGDCATV-HTANKWDLIISDM  131 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCT-TCEEEEEESSCC-B-----CS-SSEEEESCGGGC-CCSSCEEEEEECC
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCC-CCEEEEEECCCC-C-----CC-CEEEEECccccC-CccCcccEEEEcC
Confidence            4578999999      5576  22222 121 136899999965 1     12 222 22223332 3458999999974


Q ss_pred             hhcc--------ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccce-EEEecCCCCCCCCceEEEEE
Q 019879          252 LFSL--------YKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD-TKMVDHEDGPLVPEKILVAV  321 (334)
Q Consensus       252 vfs~--------~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~-~~~~~~~~~~~~~e~~l~~~  321 (334)
                      ..+.        ......++.++.++.|+|||||.|++.... .....+..+++...+. +...-..  ....|.+|+++
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr--~~s~e~~lv~~  209 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVN--ASSSEAFLIGA  209 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGG--TTSSCEEEEEE
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcC--CCchheEEecC
Confidence            3221        111122468999999999999999997633 2234666667776453 4443111  22368899887


Q ss_pred             e
Q 019879          322 K  322 (334)
Q Consensus       322 K  322 (334)
                      .
T Consensus       210 ~  210 (290)
T 2xyq_A          210 N  210 (290)
T ss_dssp             E
T ss_pred             C
Confidence            6

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.90  E-value=6e-09  Score=99.55  Aligned_cols=144  Identities=12%  Similarity=0.102  Sum_probs=90.2

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCC----cEEEEEeccCChhhHHHHHHc----Ccc-chhhhhcccCCCCC-CccceE
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKL----WVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v----~v~nVv~vD~s~~~L~~a~~R----gli-~~~~d~~e~l~~yp-~sFDlV  247 (334)
                      .....+|||+|||+|+|+..+.+...    ...+++++|+++.++.+|..+    |+. ...+  ...+.+.+ ..||+|
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~--~D~l~~~~~~~fD~I  205 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVV  205 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE--CCCCCccccCCccEE
Confidence            33457999999999999988876421    125799999999999887664    431 1111  11233334 899999


Q ss_pred             EechhhccccCc--------------CCH-HHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecC
Q 019879          248 HAHGLFSLYKDK--------------CNI-EDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH  307 (334)
Q Consensus       248 ha~~vfs~~~~~--------------c~~-~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~  307 (334)
                      +++--|++....              .+. ..++.++.+.|||||.+++..+.     .....+.+.+....+...+...
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l  285 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  285 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence            999777654211              012 25899999999999999887632     2335566665555553322211


Q ss_pred             C----CCCCCCceEEEEEec
Q 019879          308 E----DGPLVPEKILVAVKQ  323 (334)
Q Consensus       308 ~----~~~~~~e~~l~~~K~  323 (334)
                      .    .+.....-++|.+|.
T Consensus       286 p~~~F~~~~~~~~i~vl~k~  305 (344)
T 2f8l_A          286 PETLFKSEQARKSILILEKA  305 (344)
T ss_dssp             CGGGSCC-CCCEEEEEEEEC
T ss_pred             ChhhccCCCCceEEEEEECC
Confidence            1    111245667777764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.89  E-value=4.3e-10  Score=105.43  Aligned_cols=102  Identities=10%  Similarity=0.017  Sum_probs=64.3

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCC-CccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      +......+|||+|||+|.++..|++.+.   .|+++|+++.|++.+.++-    +.....-.+.++..++ .+||+|+++
T Consensus        24 ~~~~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~n  100 (285)
T 1zq9_A           24 AALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVAN  100 (285)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEE
T ss_pred             cCCCCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEe
Confidence            3334557999999999999999998753   6999999999999887652    1111111122332334 589999997


Q ss_pred             hh-----------hccccCcCCHH-HHHHHH--HHhhcCCeEEE
Q 019879          251 GL-----------FSLYKDKCNIE-DILLEM--DRILRPEGAII  280 (334)
Q Consensus       251 ~v-----------fs~~~~~c~~~-~~L~Em--~RVLRPGG~li  280 (334)
                      ..           ++|........ .+-+|+  .|+|||||.++
T Consensus       101 lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          101 LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            33           33321111000 000455  47999999875

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.88  E-value=5.5e-09  Score=98.62  Aligned_cols=143  Identities=13%  Similarity=0.097  Sum_probs=95.0

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCc
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRT  243 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~s  243 (334)
                      |..++..+.  .+.+|||+|||+|-|+..+..... ...++++|+++.|++++.++    |+...+ ..++-+ .+.+..
T Consensus       123 Y~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~~~~-~v~D~~~~~p~~~  198 (281)
T 3lcv_B          123 YRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVPHRT-NVADLLEDRLDEP  198 (281)
T ss_dssp             HHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCCEEE-EECCTTTSCCCSC
T ss_pred             HHHHHhccC--CCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceE-EEeeecccCCCCC
Confidence            444555553  368999999999999988877521 24799999999999988765    332111 111111 234599


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------hhHHHHHHHHhcccceEEEecCCCCCC
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------DEIIKVKKIVGGMRWDTKMVDHEDGPL  312 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~~~~~l~W~~~~~~~~~~~~  312 (334)
                      ||+|.+.-+++|+.+. .-...+ ++...|+|||.||-.+..           .+-...+..+..-.|.+.....     
T Consensus       199 ~DvaL~lkti~~Le~q-~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~-----  271 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQ-QRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI-----  271 (281)
T ss_dssp             CSEEEETTCHHHHHHH-STTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE-----
T ss_pred             cchHHHHHHHHHhhhh-hhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee-----
Confidence            9999999999998532 112344 999999999999998871           1445566667667776654332     


Q ss_pred             CCceEEEEEe
Q 019879          313 VPEKILVAVK  322 (334)
Q Consensus       313 ~~e~~l~~~K  322 (334)
                      ..|-+.+.+|
T Consensus       272 ~nEl~y~i~k  281 (281)
T 3lcv_B          272 GNELIYVIQK  281 (281)
T ss_dssp             TTEEEEEEC-
T ss_pred             cCeeEEEecC
Confidence            2455555443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.85  E-value=2.3e-09  Score=103.12  Aligned_cols=101  Identities=13%  Similarity=0.062  Sum_probs=70.0

Q ss_pred             ceEeeecccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcC-c-----cchhhhhccc-CCCCC-CccceEEechh
Q 019879          182 RNIMDMNAGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERG-L-----IGIYHDWCEA-FSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rg-l-----i~~~~d~~e~-l~~yp-~sFDlVha~~v  252 (334)
                      .+|||+|||+|.++..|++ .+.  ..|+.+|+++.+++.++++- +     +.+++..+.. +..++ ++||+|++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            4999999999999999988 332  26899999999999988762 1     1112211111 22344 89999998743


Q ss_pred             hccccC-cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKD-KCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+.... .-.-..++.++.|+|||||.|++...
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            332111 11126899999999999999998753

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.84  E-value=1.6e-08  Score=94.43  Aligned_cols=133  Identities=11%  Similarity=-0.013  Sum_probs=93.6

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccC-CCCCCccceEEechhh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAF-STYPRTYDLIHAHGLF  253 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l-~~yp~sFDlVha~~vf  253 (334)
                      ..+.+|||+|||+|-|+..+. .+   ..++++|+++.|++++.++    |....+ ..++.. .+.+.+||+|.+.-++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~~~g~~~~~-~v~D~~~~~~~~~~DvvLllk~l  178 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAREKDWDFTF-ALQDVLCAPPAEAGDLALIFKLL  178 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHHHTTCEEEE-EECCTTTSCCCCBCSEEEEESCH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHHhcCCCceE-EEeecccCCCCCCcchHHHHHHH
Confidence            457899999999999999888 32   4699999999999988766    211111 112221 3456999999999888


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-----------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-----------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      +|+.+..  ...+.++.+.|+|+|.+|-.+..           .+-..+++.+..--|.+......     .|-+.+.+|
T Consensus       179 h~LE~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~-----nEl~~~i~~  251 (253)
T 3frh_A          179 PLLEREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIG-----TELIYLIKK  251 (253)
T ss_dssp             HHHHHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEET-----TEEEEEEEE
T ss_pred             HHhhhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecC-----ceEEEEEec
Confidence            8875322  12344888899999999988721           14456777788888887754433     577777776


Q ss_pred             c
Q 019879          323 Q  323 (334)
Q Consensus       323 ~  323 (334)
                      .
T Consensus       252 ~  252 (253)
T 3frh_A          252 N  252 (253)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.83  E-value=1.1e-08  Score=99.28  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceEEec
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      .....+|||+|||+|+++..++..+.+ ..|+++|+++.|++.|.++    |+   +...+.....++..+++||+|+++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            345679999999999999999887542 2699999999999987764    43   222332233443233899999998


Q ss_pred             hhhcccc-CcCC----HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879          251 GLFSLYK-DKCN----IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       251 ~vfs~~~-~~c~----~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      --|..-. ....    ...++.++.|+| +|+.++++...+.   +++.+....|+..
T Consensus       294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~---~~~~~~~~G~~~~  347 (373)
T 3tm4_A          294 LPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKA---IEEAIAENGFEII  347 (373)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHH---HHHHHHHTTEEEE
T ss_pred             CCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHH---HHHHHHHcCCEEE
Confidence            6655321 1111    257889999999 5555666555443   3445666677764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.83  E-value=8.5e-09  Score=102.56  Aligned_cols=122  Identities=13%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CC-CccceE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YP-RTYDLI  247 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp-~sFDlV  247 (334)
                      +......+|||+|||+|+++..|++.-.-...|+++|.++.++..+.++    |+  +.........++. ++ ++||+|
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEE
Confidence            3444557999999999999999987311113699999999999877665    54  2222211222322 56 789999


Q ss_pred             Eec------hhhccccC------cCCH-------HHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhc
Q 019879          248 HAH------GLFSLYKD------KCNI-------EDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGG  297 (334)
Q Consensus       248 ha~------~vfs~~~~------~c~~-------~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~  297 (334)
                      +++      .++.+.++      ..++       ..+|.++.++|||||.+++++..    +.-..|+.++..
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~  407 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV  407 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence            962      34433211      1122       57899999999999999998642    222345555444

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.83  E-value=4.4e-09  Score=103.55  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=69.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-hhh-hhcccCCCCCCccceEEechh-h
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYH-DWCEAFSTYPRTYDLIHAHGL-F  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~~~-d~~e~l~~yp~sFDlVha~~v-f  253 (334)
                      ..+|||+|||+|+|+..++..+.   .|+++|+|+.+++.+.++    |+.. ..+ |..+.+..+++.||+|+++-- |
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            47999999999999999999874   399999999999987664    3321 111 111112223545999998622 1


Q ss_pred             cccc-C----cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          254 SLYK-D----KCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       254 s~~~-~----~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +.-. +    ..+...++.++.|+|||||.|++.+.
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            1000 0    01345889999999999999997764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.81  E-value=7.5e-09  Score=101.07  Aligned_cols=119  Identities=14%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhhhhccc-CCCC---CCccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYHDWCEA-FSTY---PRTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~d~~e~-l~~y---p~sFDlVh  248 (334)
                      ..+|||+|||+|+|+..++..+.  ..|+++|+|+.+++.|.+.    |+.    ..+...+.. ++..   ..+||+|+
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            47999999999999999998763  3699999999999987654    332    111111111 1111   25899999


Q ss_pred             echhh-----ccccCc-CCHHHHHHHHHHhhcCCeEEEEEeChh------hHHHHHHHHhcccce
Q 019879          249 AHGLF-----SLYKDK-CNIEDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIVGGMRWD  301 (334)
Q Consensus       249 a~~vf-----s~~~~~-c~~~~~L~Em~RVLRPGG~lii~D~~~------~~~~i~~~~~~l~W~  301 (334)
                      ++--.     .+..+. ..+..++.++.++|+|||.|+++....      ..+.++..+......
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            85222     111111 124567888899999999999987542      334455556565554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.81  E-value=6.9e-09  Score=104.65  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-CCCccceEEec--
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-YPRTYDLIHAH--  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-yp~sFDlVha~--  250 (334)
                      ...+|||+|||+|+.+..|++.-.-...|+++|+++.++..+.++    |+  +.+.+..+..++. ++++||+|+++  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            457999999999999999887411113599999999999877654    43  2222222222222 35899999973  


Q ss_pred             ----hhhccccCc----C---------CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 ----GLFSLYKDK----C---------NIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ----~vfs~~~~~----c---------~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                          .++.+.++.    .         ....+|.++.|+|||||.|++++.
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence                334332210    0         024789999999999999999863

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.81  E-value=1e-08  Score=101.18  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=71.8

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-chhhhhcccCCC-CC-CccceEE
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST-YP-RTYDLIH  248 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~~~d~~e~l~~-yp-~sFDlVh  248 (334)
                      +......+|||+|||+|+++..|++.... ..|+++|.++.++..+.++    |+. ...+..+..++. ++ ++||+|+
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEE
Confidence            34445679999999999999999885322 4799999999999877665    431 111111111211 44 7899999


Q ss_pred             ec------hhhccccC------cCCH-------HHHHHHHHHhhcCCeEEEEEe
Q 019879          249 AH------GLFSLYKD------KCNI-------EDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       249 a~------~vfs~~~~------~c~~-------~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++      .++.+.++      ..++       ..+|.++.++|||||.+++++
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            63      33333211      0111       478999999999999999987

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.80  E-value=2.7e-09  Score=103.68  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCC-C---CCccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFST-Y---PRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~-y---p~sFDlVha  249 (334)
                      ...+|||+|||+|+|+..++..   ...|+++|+++.+++.+.+.    |+  +..+...+..+.+ +   +.+||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            4579999999999999999886   46899999999999877654    33  1122211222111 1   478999998


Q ss_pred             chhhccccC------cCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HGLFSLYKD------KCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~vfs~~~~------~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +--......      ......++.++.++|+|||.++++...
T Consensus       286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            621100000      023467999999999999999998754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.79  E-value=2.6e-08  Score=91.42  Aligned_cols=118  Identities=9%  Similarity=0.050  Sum_probs=84.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhc-ccCCCCC-C-ccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWC-EAFSTYP-R-TYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~-e~l~~yp-~-sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.++..|+..+. ...|+++|+++.+++.|.+.    |+.....-.+ ..+..++ + .||+|+...+-
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~G   94 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMG   94 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCCC
Confidence            37899999999999999998752 35799999999999987654    4421111111 1223344 4 69988754332


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~  305 (334)
                      .     ..+..+|.+..+.|+|+|+|+++-.. ....+.+.+....|.+...
T Consensus        95 g-----~~i~~Il~~~~~~L~~~~~lVlq~~~-~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           95 G-----RLIARILEEGLGKLANVERLILQPNN-REDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             H-----HHHHHHHHHTGGGCTTCCEEEEEESS-CHHHHHHHHHHTTEEEEEE
T ss_pred             h-----HHHHHHHHHHHHHhCCCCEEEEECCC-CHHHHHHHHHHCCCEEEEE
Confidence            1     22678999999999999999998774 4567788888889987643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.79  E-value=6.2e-09  Score=101.53  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-c---chhhhhcccCCC-C---CCccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-I---GIYHDWCEAFST-Y---PRTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i---~~~~d~~e~l~~-y---p~sFDlVh  248 (334)
                      ..+|||+|||+|+|+..++..+.  ..|+++|+++.+++.+.+.    |+ .   ......+..+.+ +   +.+||+|+
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            47999999999999999998763  4799999999999877654    33 2   111111111111 1   36899999


Q ss_pred             echhhc-----ccc-CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          249 AHGLFS-----LYK-DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       249 a~~vfs-----~~~-~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++--..     ++. .......++.++.++|+|||.++++...
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            972110     000 0134678999999999999999998754

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.77  E-value=5.1e-09  Score=105.42  Aligned_cols=108  Identities=15%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-chhhhhcccCCC-CCCccceEEec
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-GIYHDWCEAFST-YPRTYDLIHAH  250 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-~~~~d~~e~l~~-yp~sFDlVha~  250 (334)
                      ......+|||+|||+|+.+..|++.-.....|+++|+++.+++.+.++    |+. ...+.....++. ++++||+|+++
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEEC
Confidence            334457999999999999999986411112589999999999877654    432 222221222332 45899999952


Q ss_pred             ------hhhccccCc------CC-------HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 ------GLFSLYKDK------CN-------IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ------~vfs~~~~~------c~-------~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                            .++.+.++.      .+       ...+|.++.|+|||||.|++++.
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                  333322111      11       15799999999999999999763

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.76  E-value=4e-08  Score=92.69  Aligned_cols=134  Identities=15%  Similarity=0.143  Sum_probs=88.1

Q ss_pred             cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc
Q 019879          153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG  228 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~  228 (334)
                      -+|......-+.++..      .++.  ..+|||+|||+|.|+..++.++.  ..|+++|.++.+++.+.+.    |+..
T Consensus       106 ~~f~~~~~~er~ri~~------~~~~--g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~  175 (278)
T 3k6r_A          106 IMFSPANVKERVRMAK------VAKP--DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVED  175 (278)
T ss_dssp             SCCCGGGHHHHHHHHH------HCCT--TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred             eEEcCCcHHHHHHHHH------hcCC--CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3555555544444332      3443  47899999999999988887764  3689999999988876543    4322


Q ss_pred             ---hhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-------hhhHHHHHHHHhcc
Q 019879          229 ---IYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-------VDEIIKVKKIVGGM  298 (334)
Q Consensus       229 ---~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~~~~~l  298 (334)
                         .+...+..++ ..+.||.|+++...       ....+|.+..++|||||++.+.+.       .+..+.+++++...
T Consensus       176 ~v~~~~~D~~~~~-~~~~~D~Vi~~~p~-------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~  247 (278)
T 3k6r_A          176 RMSAYNMDNRDFP-GENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY  247 (278)
T ss_dssp             TEEEECSCTTTCC-CCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred             cEEEEeCcHHHhc-cccCCCEEEECCCC-------cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence               2222222221 12889999887322       223577788899999999987542       13456778888878


Q ss_pred             cceEEE
Q 019879          299 RWDTKM  304 (334)
Q Consensus       299 ~W~~~~  304 (334)
                      .+++..
T Consensus       248 g~~v~~  253 (278)
T 3k6r_A          248 GYDVEK  253 (278)
T ss_dssp             TCEEEE
T ss_pred             CCcEEE
Confidence            777654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.76  E-value=3.6e-09  Score=103.06  Aligned_cols=104  Identities=10%  Similarity=0.037  Sum_probs=70.5

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCC-C---CCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFST-Y---PRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~-y---p~sFDlVh  248 (334)
                      ...+|||+|||+|+|+..++..+.  ..|+++|+++.+++.+.+.    |+.   ......+..+.+ +   +++||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            347999999999999999998753  3699999999999877654    331   112111111211 1   46899999


Q ss_pred             echhhcccc------CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          249 AHGLFSLYK------DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       249 a~~vfs~~~------~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      ++--.....      ...+...++.++.++|+|||.+++....
T Consensus       295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            862111000      0023568999999999999999988643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.76  E-value=5.1e-08  Score=89.81  Aligned_cols=132  Identities=14%  Similarity=0.089  Sum_probs=90.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCCCCC-CccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ..+|||+|||+|.++.+|+..+. ...|+++|+++.+++.|.+.    |+.   .+.. |..+.  ..+ ..||+|+...
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~--~~~~~~~D~IviaG   98 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA--FEEADNIDTITICG   98 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cccccccCEEEEeC
Confidence            37899999999999999998752 35799999999999987654    432   1111 22222  233 3799987544


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEec--CCCCCCCCceEEEEEec
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVD--HEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~--~~~~~~~~e~~l~~~K~  323 (334)
                      +-..     .+..+|.+..+.|+++|+||++-... ...+++.+....|.+....  .|++  .--.++.+.+.
T Consensus        99 mGg~-----lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E~lv~e~~--~~Yeii~~~~~  164 (230)
T 3lec_A           99 MGGR-----LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAEDILTEND--KRYEILVVKHG  164 (230)
T ss_dssp             ECHH-----HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEEEEEEC----CEEEEEEEEEC
T ss_pred             CchH-----HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEEEEEEECC--EEEEEEEEEeC
Confidence            3322     36789999999999999999998654 5678888888999876433  1222  12345666553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.75  E-value=1.1e-08  Score=99.08  Aligned_cols=139  Identities=13%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccC-
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD-  258 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~-  258 (334)
                      ...+|||+|||+|.|+.+++++-....+++++|+++.+++.+ . . +...+...... ..++.||+|+++--+..... 
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~-~-~~~~~~D~~~~-~~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-P-W-AEGILADFLLW-EPGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-T-T-EEEEESCGGGC-CCSSCEEEEEECCCCCCBSCT
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-C-C-CcEEeCChhhc-CccCCCCEEEECcCccCcccc
Confidence            346999999999999999987410114799999998887766 1 1 11221111111 12378999999622211100 


Q ss_pred             --------c----------------C-CHHHHHHHHHHhhcCCeEEEEEeChh-----hHHHHHHHHhcccceEEEe--c
Q 019879          259 --------K----------------C-NIEDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMV--D  306 (334)
Q Consensus       259 --------~----------------c-~~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~~~~~l~W~~~~~--~  306 (334)
                              .                . ....++..+.++|+|||.+++..+..     ..+++++.+....+...+.  .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~  194 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGE  194 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEES
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECCC
Confidence                    0                0 12367889999999999988876543     3356666655555522211  1


Q ss_pred             CCCCCCCCceEEEEEe
Q 019879          307 HEDGPLVPEKILVAVK  322 (334)
Q Consensus       307 ~~~~~~~~e~~l~~~K  322 (334)
                      .-.+....--+++.+|
T Consensus       195 ~F~~~~~~~~il~~~k  210 (421)
T 2ih2_A          195 VFPQKKVSAVVIRFQK  210 (421)
T ss_dssp             CSTTCCCCEEEEEEES
T ss_pred             CCCCCCccEEEEEEEe
Confidence            1122223445666676

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.74  E-value=4.4e-09  Score=110.62  Aligned_cols=103  Identities=16%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc----chhhhhccc-CCCCCCccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI----GIYHDWCEA-FSTYPRTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli----~~~~d~~e~-l~~yp~sFDlVha~~  251 (334)
                      ..+|||+|||+|+|+.+++..+.  ..|+++|+|+.+++.+.+.    |+.    ..++..+.. ++...++||+|+++-
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            47999999999999999988765  3699999999999987664    332    111111111 112238999999863


Q ss_pred             -hhcc-------ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          252 -LFSL-------YKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       252 -vfs~-------~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                       .|..       .....+...++.++.|+|+|||.|+++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence             1110       000123568899999999999999999876

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.74  E-value=4.6e-08  Score=90.87  Aligned_cols=114  Identities=12%  Similarity=0.117  Sum_probs=83.2

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhh-hhcccCCCCCC-ccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFSTYPR-TYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~-d~~e~l~~yp~-sFDlVha~~  251 (334)
                      ..+|||+|||+|.++.+|+..+. ...|+++|+++.+++.|.+.    |+..   +.. |..+.  ..++ .||+|+...
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~--~~~~~~~D~Iviag   98 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV--IEKKDAIDTIVIAG   98 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc--cCccccccEEEEeC
Confidence            37899999999999999998752 35799999999999988765    4422   211 21222  2234 599987543


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      +-.     .-+..+|.+..+.|+++|+||++-... ...+++.+....|.+.
T Consensus        99 mGg-----~lI~~IL~~~~~~L~~~~~lIlq~~~~-~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A           99 MGG-----TLIRTILEEGAAKLAGVTKLILQPNIA-AWQLREWSEQNNWLIT  144 (244)
T ss_dssp             ECH-----HHHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHHTEEEE
T ss_pred             Cch-----HHHHHHHHHHHHHhCCCCEEEEEcCCC-hHHHHHHHHHCCCEEE
Confidence            332     236689999999999999999998653 5677788888889874

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.65  E-value=2.7e-08  Score=95.28  Aligned_cols=90  Identities=13%  Similarity=0.052  Sum_probs=65.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc---cchhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL---IGIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl---i~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.|+.. +..+   ..|+++|.++.+++.+.+.    |+   +..++..+..+   .++||+|+++.-.
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~~~---~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~---~~~fD~Vi~dpP~  268 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CKNA---KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV---DVKGNRVIMNLPK  268 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TTTS---SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC---CCCEEEEEECCTT
T ss_pred             CCEEEEccCccCHHHHh-ccCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh---cCCCcEEEECCcH
Confidence            47999999999999999 7632   4799999999999877654    33   12222222222   2899999987211


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                             ....++.++.++|+|||.+++.+.
T Consensus       269 -------~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          269 -------FAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             -------TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -------hHHHHHHHHHHHcCCCCEEEEEEe
Confidence                   123788999999999999998754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.65  E-value=2.4e-08  Score=100.30  Aligned_cols=125  Identities=13%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCC-CCCccceEEe
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFST-YPRTYDLIHA  249 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~-yp~sFDlVha  249 (334)
                      ......+|||+|||+|+.+.+|++.-.-...|+++|+++.+++.+.++    |+.  .+.+.....++. ++++||+|++
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence            334457999999999999988876410012589999999999877654    432  122221222322 4589999997


Q ss_pred             ch------hhccccC------cCC-------HHHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhcccce
Q 019879          250 HG------LFSLYKD------KCN-------IEDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGGMRWD  301 (334)
Q Consensus       250 ~~------vfs~~~~------~c~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~l~W~  301 (334)
                      +.      ++.+-++      ..+       ...+|.++.++|||||.|+.++-.    +.-..|+.+++...++
T Consensus       182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence            42      2221100      001       127899999999999999997632    2334455555554433

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.64  E-value=3.7e-07  Score=90.31  Aligned_cols=120  Identities=13%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCC--CCC-C
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFS--TYP-R  242 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~--~yp-~  242 (334)
                      +..+......+|||+|||+|.|+..|++.+   ..|+++|+|+.+++.|.++    |+  +...+ |..+.++  +++ +
T Consensus       279 ~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~  355 (433)
T 1uwv_A          279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN  355 (433)
T ss_dssp             HHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred             HHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcC
Confidence            333443445799999999999999999874   4799999999999987654    32  22222 2222222  133 6


Q ss_pred             ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE
Q 019879          243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~  302 (334)
                      +||+|+++      +.+.....++..+. -++|++.++++-....+.+--..+....+..
T Consensus       356 ~fD~Vv~d------PPr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~  408 (433)
T 1uwv_A          356 GFDKVLLD------PARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTI  408 (433)
T ss_dssp             CCSEEEEC------CCTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEEC------CCCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHHCCcEE
Confidence            89999986      22222345555554 3899999999988775544333333334554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.64  E-value=9.1e-08  Score=95.00  Aligned_cols=96  Identities=10%  Similarity=0.158  Sum_probs=66.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|.|+..|++.+   ..|+++|+++.+++.|.++    |+ +..+...++.+  .+.+||+|+++--   
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~--~~~~fD~Vv~dPP---  362 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV--SVKGFDTVIVDPP---  362 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC--CCTTCSEEEECCC---
T ss_pred             CCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc--CccCCCEEEEcCC---
Confidence            4799999999999999999875   3699999999999987654    32 12222212222  2258999998622   


Q ss_pred             ccCcCCH-HHHHHHHHHhhcCCeEEEEEeChhhH
Q 019879          256 YKDKCNI-EDILLEMDRILRPEGAIIIRDEVDEI  288 (334)
Q Consensus       256 ~~~~c~~-~~~L~Em~RVLRPGG~lii~D~~~~~  288 (334)
                         +... ..++..+ +.|+|||.++++-.+..+
T Consensus       363 ---r~g~~~~~~~~l-~~l~p~givyvsc~p~tl  392 (425)
T 2jjq_A          363 ---RAGLHPRLVKRL-NREKPGVIVYVSCNPETF  392 (425)
T ss_dssp             ---TTCSCHHHHHHH-HHHCCSEEEEEESCHHHH
T ss_pred             ---ccchHHHHHHHH-HhcCCCcEEEEECChHHH
Confidence               2222 2355555 569999999999877644

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.64  E-value=7.1e-10  Score=101.01  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCC--CccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP--RTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp--~sFDlVha  249 (334)
                      +......+|||+|||+|.++..|++++   .+|+++|+++.+++.+.++-    -+...+.....++ ++  ++| .|++
T Consensus        25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~f-~vv~   99 (245)
T 1yub_A           25 LNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRY-KIVG   99 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEE-EEEE
T ss_pred             cCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC-cccCCCc-EEEE
Confidence            333445799999999999999999876   47999999999988766542    1222222223332 33  688 6666


Q ss_pred             chhhc-------cc-cCcCCHHHHH----HHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFS-------LY-KDKCNIEDIL----LEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs-------~~-~~~c~~~~~L----~Em~RVLRPGG~lii~D~  284 (334)
                      +.-+.       ++ .+......++    .++.|+|+|||.+.+...
T Consensus       100 n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A          100 NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            52111       10 0011122344    569999999998876543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.63  E-value=5.5e-08  Score=91.75  Aligned_cols=96  Identities=13%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEech
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ......+|||+|||+|.++..|++++   ..|+++|+++.+++.+.++    ++ ....-.+.++..++ .+||+|+++.
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~D~Vv~n~  114 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVFPKFDVCTANI  114 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCCCCCSEEEEEC
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCcccCCEEEEcC
Confidence            33345799999999999999999875   3699999999999987764    32 11111122333344 6899999974


Q ss_pred             hhccccCcCCHHHHH---------------HHHHHhhcCCeE
Q 019879          252 LFSLYKDKCNIEDIL---------------LEMDRILRPEGA  278 (334)
Q Consensus       252 vfs~~~~~c~~~~~L---------------~Em~RVLRPGG~  278 (334)
                      .++...  ..+..++               .+..|+++|+|.
T Consensus       115 py~~~~--~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          115 PYKISS--PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             CGGGHH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             Cccccc--HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            443211  1122333               347789998885

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.55  E-value=2.8e-08  Score=90.98  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=39.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +......+|||+|||+|.++..|++++   ..|+++|.+++|++.+.++
T Consensus        26 ~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~   71 (244)
T 1qam_A           26 IRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENK   71 (244)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHh
Confidence            444456799999999999999999876   4699999999999988775

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.55  E-value=3.5e-07  Score=90.58  Aligned_cols=147  Identities=16%  Similarity=0.115  Sum_probs=87.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCC------------CcEEEEEeccCChhhHHHHHHc----Cccc-hhhhhcccCC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSK------------LWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFS  238 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~------------v~v~nVv~vD~s~~~L~~a~~R----gli~-~~~d~~e~l~  238 (334)
                      +......+|||.|||+|+|+..+.+.-            ....+++|+|+++.++.+|...    |+.. ..+-.+.+..
T Consensus       167 l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l  246 (445)
T 2okc_A          167 INPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL  246 (445)
T ss_dssp             HCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTT
T ss_pred             hCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCC
Confidence            444455789999999999987776520            0113589999999998877643    4310 1111122222


Q ss_pred             CCC--CccceEEechhhccccCcC------C--------HHHHHHHHHHhhcCCeEEEEEeChhhH------HHHHH-HH
Q 019879          239 TYP--RTYDLIHAHGLFSLYKDKC------N--------IEDILLEMDRILRPEGAIIIRDEVDEI------IKVKK-IV  295 (334)
Q Consensus       239 ~yp--~sFDlVha~~vfs~~~~~c------~--------~~~~L~Em~RVLRPGG~lii~D~~~~~------~~i~~-~~  295 (334)
                      ..+  ..||+|+++--|++.....      +        -..++.++.+.|||||.+++..+...+      ..|++ ++
T Consensus       247 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~  326 (445)
T 2okc_A          247 EKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  326 (445)
T ss_dssp             TSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             CCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHH
Confidence            222  6899999997776532111      0        137899999999999998877654322      34554 34


Q ss_pred             hcccceEEEecCCCC----CCCCceEEEEEec
Q 019879          296 GGMRWDTKMVDHEDG----PLVPEKILVAVKQ  323 (334)
Q Consensus       296 ~~l~W~~~~~~~~~~----~~~~e~~l~~~K~  323 (334)
                      ........+. ...+    ...+--+++.+|.
T Consensus       327 ~~~~l~~ii~-lp~~~F~~t~v~t~Il~~~k~  357 (445)
T 2okc_A          327 QDFNLHTILR-LPTGIFYAQGVKANVLFFSKG  357 (445)
T ss_dssp             HHEEEEEEEE-CCSSSSSSTTCCEEEEEEEES
T ss_pred             hcCcEEEEEe-CCCCCccCCCCCEEEEEEECC
Confidence            4444443321 2211    1234556666653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.45  E-value=2.6e-07  Score=87.30  Aligned_cols=134  Identities=13%  Similarity=0.080  Sum_probs=77.4

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHH---cCc-cchhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYE---RGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~---Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|+|+...+++ +  +..|+++|++.++......   .|. +.....-++. ..++ +.||+|.|....+
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~--~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv-~~l~~~~~DlVlsD~apn  151 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKE--VSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDI-HRLEPVKCDTLLCDIGES  151 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTT--EEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCT-TTSCCCCCSEEEECCCCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhcC--CCcceeEEEeccCcccccccCcCCCCeEEEecccee-hhcCCCCccEEEecCccC
Confidence            368999999999999977664 3  3456777766443100000   011 1111111122 2355 8999999986555


Q ss_pred             cccC-cCC---HHHHHHHHHHhhcCC-eEEEEEeCh-------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          255 LYKD-KCN---IEDILLEMDRILRPE-GAIIIRDEV-------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       255 ~~~~-~c~---~~~~L~Em~RVLRPG-G~lii~D~~-------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                       --. .-|   ...+|..+.++|||| |.|++.--.       +.+..++..+.+.+..  .+-+  -....|.|++|+.
T Consensus       152 -sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~--KPaS--R~~S~E~Y~V~~~  226 (277)
T 3evf_A          152 -SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIR--NPLS--RNSTHEMYYVSGA  226 (277)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEEC--CTTS--CTTCCCEEEESSC
T ss_pred             -cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEE--eCCC--CCCCCceEEEEec
Confidence             111 111   124578889999999 999997543       2445555555554432  2211  1225789999865

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.40  E-value=3.5e-07  Score=89.75  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             CceEeeecccccHHHHHHHh--------C------CCcEEEEEeccCChhhHHHHHHcCccch-----------------
Q 019879          181 YRNIMDMNAGFGGFAAAIQS--------S------KLWVMNVVPTLADKNTLGVIYERGLIGI-----------------  229 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~--------~------~v~v~nVv~vD~s~~~L~~a~~Rgli~~-----------------  229 (334)
                      .-+|+|+|||+|..+..++.        +      ..-...|.-.|.+.+.....+.. |...                 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~-L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL-LPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH-SCCBCCCC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh-hhhhhhhcchhhhccccCCCc
Confidence            47899999999998776621        1      11235788888887775544432 1100                 


Q ss_pred             -h-hhhcccC--CCCC-CccceEEechhhccccCcC-----------------------------------CHHHHHHHH
Q 019879          230 -Y-HDWCEAF--STYP-RTYDLIHAHGLFSLYKDKC-----------------------------------NIEDILLEM  269 (334)
Q Consensus       230 -~-~d~~e~l--~~yp-~sFDlVha~~vfs~~~~~c-----------------------------------~~~~~L~Em  269 (334)
                       + ......|  ..|| +|||+||++.+||.+.+..                                   |+..+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             0 0000111  2367 9999999999999765322                                   455689999


Q ss_pred             HHhhcCCeEEEEEe
Q 019879          270 DRILRPEGAIIIRD  283 (334)
Q Consensus       270 ~RVLRPGG~lii~D  283 (334)
                      .|.|+|||.++++-
T Consensus       212 a~eL~pGG~mvl~~  225 (374)
T 3b5i_A          212 AAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEE
Confidence            99999999999973

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.34  E-value=5.6e-07  Score=88.09  Aligned_cols=113  Identities=12%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCc-------------------------------------EEEEEeccCCh
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-------------------------------------VMNVVPTLADK  215 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~-------------------------------------v~nVv~vD~s~  215 (334)
                      +....+.....|||.+||+|+|+..++..+..                                     ...|+++|+++
T Consensus       188 l~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~  267 (385)
T 3ldu_A          188 IYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDE  267 (385)
T ss_dssp             HHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCH
T ss_pred             HHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCH
Confidence            33345555689999999999988666542110                                     13599999999


Q ss_pred             hhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhhcc-ccCcCCHHHHHHHHHHhhcC--CeEEEEEeCh
Q 019879          216 NTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLFSL-YKDKCNIEDILLEMDRILRP--EGAIIIRDEV  285 (334)
Q Consensus       216 ~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vfs~-~~~~c~~~~~L~Em~RVLRP--GG~lii~D~~  285 (334)
                      .|++.|.+.    |+.   ...+..+..+ +.+.+||+|+++-=|.. +.+..++..+..+|.++||+  ||.+++-...
T Consensus       268 ~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l-~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          268 ESIDIARENAEIAGVDEYIEFNVGDATQF-KSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY  346 (385)
T ss_dssp             HHHHHHHHHHHHHTCGGGEEEEECCGGGC-CCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECChhhc-CcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            999987664    432   2222222223 23479999999854432 22223466788889999987  8877766554


Q ss_pred             h
Q 019879          286 D  286 (334)
Q Consensus       286 ~  286 (334)
                      .
T Consensus       347 ~  347 (385)
T 3ldu_A          347 E  347 (385)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.27  E-value=2e-06  Score=83.91  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             CCceEeeecccccHHHHHHHhC---------------CCcEEEEEeccCChhhHHHHHHcCccc-------hh-hhhccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS---------------KLWVMNVVPTLADKNTLGVIYERGLIG-------IY-HDWCEA  236 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~---------------~v~v~nVv~vD~s~~~L~~a~~Rgli~-------~~-~d~~e~  236 (334)
                      +.-+|+|+||++|..+..+.+.               ..-...|.-.|.+.+....++.+ |..       .+ ....+.
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~-L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRS-LPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTT-TTTSCSCTTCEEEEEEESC
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHh-cchhcccCCCEEEEecchh
Confidence            4578999999999866554432               23357899999998988877754 211       00 111122


Q ss_pred             C--CCCC-CccceEEechhhccccCcC------------------------------CHHHHHHHHHHhhcCCeEEEEE
Q 019879          237 F--STYP-RTYDLIHAHGLFSLYKDKC------------------------------NIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       237 l--~~yp-~sFDlVha~~vfs~~~~~c------------------------------~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |  ..|| +|||+||++..||.+.+..                              |+..+|+-..|.|+|||.+++.
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            2  2467 9999999999998654311                              2345688889999999999997

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.23  E-value=2.5e-06  Score=83.95  Aligned_cols=102  Identities=13%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CceEeeecccccHHHHHHHhC----------------CCcEEEEEeccCChhhH-----------HHH-HHcCc-cc-hh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS----------------KLWVMNVVPTLADKNTL-----------GVI-YERGL-IG-IY  230 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~----------------~v~v~nVv~vD~s~~~L-----------~~a-~~Rgl-i~-~~  230 (334)
                      .-+|+|+||++|..+..+++.                ..-...|.-.|.+.+-.           +.. .+.|. .+ .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999877666442                01246788888874322           111 11221 00 00


Q ss_pred             -hhhcccC--CCCC-CccceEEechhhccccCcC-CHH-----------------------------------HHHHHHH
Q 019879          231 -HDWCEAF--STYP-RTYDLIHAHGLFSLYKDKC-NIE-----------------------------------DILLEMD  270 (334)
Q Consensus       231 -~d~~e~l--~~yp-~sFDlVha~~vfs~~~~~c-~~~-----------------------------------~~L~Em~  270 (334)
                       ...-+.|  ..|| +|||+||++..||.+.+.. .+.                                   .+|+-..
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0111111  2367 9999999999998765332 221                                   2255558


Q ss_pred             HhhcCCeEEEEE
Q 019879          271 RILRPEGAIIIR  282 (334)
Q Consensus       271 RVLRPGG~lii~  282 (334)
                      |.|+|||.+++.
T Consensus       213 ~eL~pGG~mvl~  224 (384)
T 2efj_A          213 EELISRGRMLLT  224 (384)
T ss_dssp             HHEEEEEEEEEE
T ss_pred             HHhccCCeEEEE
Confidence            999999999997

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.22  E-value=1.4e-06  Score=85.56  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCc-------------------------------------EEEEEeccCChhh
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-------------------------------------VMNVVPTLADKNT  217 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~-------------------------------------v~nVv~vD~s~~~  217 (334)
                      ...+.....|||.+||+|+|+...+.....                                     ...|+++|+++.|
T Consensus       196 l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~a  275 (393)
T 3k0b_A          196 LTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARL  275 (393)
T ss_dssp             HSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHH
T ss_pred             HhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHH
Confidence            345555689999999999987555432110                                     1349999999999


Q ss_pred             HHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhhcc-ccCcCCHHHHHHHHHHhhcC--CeEEEEEeChh
Q 019879          218 LGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLFSL-YKDKCNIEDILLEMDRILRP--EGAIIIRDEVD  286 (334)
Q Consensus       218 L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vfs~-~~~~c~~~~~L~Em~RVLRP--GG~lii~D~~~  286 (334)
                      +..|.+.    |+.   ...+..+..+ +.+.+||+|+++-=|.. +.+..++..+..+|.++||+  ||.+++-....
T Consensus       276 l~~Ar~Na~~~gl~~~I~~~~~D~~~~-~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          276 IEIAKQNAVEAGLGDLITFRQLQVADF-QTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEECCGGGC-CCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHHcCCCCceEEEECChHhC-CCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            9987654    432   2222222233 23479999999833321 11123456777888888887  88777665544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.19  E-value=9.1e-07  Score=86.57  Aligned_cols=93  Identities=14%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-------------------Cc--cchhhhhcccCC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-------------------GL--IGIYHDWCEAFS  238 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-------------------gl--i~~~~d~~e~l~  238 (334)
                      ..+|||+|||+|.++..++.+ +.  ..|+++|+++++++.+.+.                   |+  +..++..+..+.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            478999999999999988875 32  3599999999998876542                   33  112221111111


Q ss_pred             -CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          239 -TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       239 -~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                       ..++.||+|+..-       .+....++....|.|||||.++++
T Consensus       126 ~~~~~~fD~I~lDP-------~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          126 AERHRYFHFIDLDP-------FGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HHSTTCEEEEEECC-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-------CCCHHHHHHHHHHhcCCCCEEEEE
Confidence             1246899998752       233468899999999999998886

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.17  E-value=3.2e-06  Score=82.88  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCc-------------------------------------EEEEEeccCChhh
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLW-------------------------------------VMNVVPTLADKNT  217 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~-------------------------------------v~nVv~vD~s~~~  217 (334)
                      ...+.....|||.+||+|+|+...+.....                                     ...|+++|+++.|
T Consensus       189 l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~a  268 (384)
T 3ldg_A          189 LSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRM  268 (384)
T ss_dssp             HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHH
T ss_pred             HhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHH
Confidence            345555689999999999987555432110                                     1349999999999


Q ss_pred             HHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhhcc-ccCcCCHHHHHHHHHHhhcC--CeEEEEEeChh
Q 019879          218 LGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLFSL-YKDKCNIEDILLEMDRILRP--EGAIIIRDEVD  286 (334)
Q Consensus       218 L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vfs~-~~~~c~~~~~L~Em~RVLRP--GG~lii~D~~~  286 (334)
                      ++.|.+.    |+.   ...+.....+ +.+.+||+|+++-=|.. +.+..++..+..+|.++||+  ||.+++-....
T Consensus       269 l~~Ar~Na~~~gl~~~I~~~~~D~~~l-~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  346 (384)
T 3ldg_A          269 VEIARKNAREVGLEDVVKLKQMRLQDF-KTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT  346 (384)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEECCGGGC-CCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred             HHHHHHHHHHcCCCCceEEEECChHHC-CccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence            9987654    432   2222222233 23479999999843331 22223567888889999987  88777766544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.12  E-value=7.4e-06  Score=83.62  Aligned_cols=149  Identities=12%  Similarity=0.040  Sum_probs=86.0

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhC----CC-------------cEEEEEeccCChhhHHHHHHc----Cccch----
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSS----KL-------------WVMNVVPTLADKNTLGVIYER----GLIGI----  229 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~----~v-------------~v~nVv~vD~s~~~L~~a~~R----gli~~----  229 (334)
                      .+......+|||.+||+|+|...+.+.    ..             ...+++|+|+++.++.+|...    |+...    
T Consensus       164 ~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~  243 (541)
T 2ar0_A          164 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG  243 (541)
T ss_dssp             HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred             HhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcccccc
Confidence            344445578999999999998766542    10             113699999999998877643    33210    


Q ss_pred             hhhhccc-CC--CCC-CccceEEechhhccccCc----------CC-HHHHHHHHHHhhcCCeEEEEEeChhhH------
Q 019879          230 YHDWCEA-FS--TYP-RTYDLIHAHGLFSLYKDK----------CN-IEDILLEMDRILRPEGAIIIRDEVDEI------  288 (334)
Q Consensus       230 ~~d~~e~-l~--~yp-~sFDlVha~~vfs~~~~~----------c~-~~~~L~Em~RVLRPGG~lii~D~~~~~------  288 (334)
                      ..-.+.+ +.  ..+ ..||+|+++--|+.....          .+ -..++..+.+.|||||.+.+--+..++      
T Consensus       244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~  323 (541)
T 2ar0_A          244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  323 (541)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHH
Confidence            1111222 21  123 689999998655532210          11 236899999999999998887654432      


Q ss_pred             HHHHHHHhcccceEEEecCCCCC----CCCceEEEEEec
Q 019879          289 IKVKKIVGGMRWDTKMVDHEDGP----LVPEKILVAVKQ  323 (334)
Q Consensus       289 ~~i~~~~~~l~W~~~~~~~~~~~----~~~e~~l~~~K~  323 (334)
                      .+|++.+..-..-..+.....+.    ....-|||.+|.
T Consensus       324 ~~iR~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~  362 (541)
T 2ar0_A          324 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG  362 (541)
T ss_dssp             HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred             HHHHHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECC
Confidence            34544433222222222222222    234567777774

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.11  E-value=3.3e-06  Score=80.09  Aligned_cols=73  Identities=11%  Similarity=0.055  Sum_probs=51.8

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCC-CccceEEech
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ......+|||+|||+|.++..|++.+   ..|+++|+++++++.+.++-    -+..++..+..+ +++ .+||.|+++.
T Consensus        47 ~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~-~~~~~~fD~Iv~Nl  122 (295)
T 3gru_A           47 NLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV-DLNKLDFNKVVANL  122 (295)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS-CGGGSCCSEEEEEC
T ss_pred             CCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC-CcccCCccEEEEeC
Confidence            33345799999999999999999875   46999999999999887652    122222222222 344 6799999984


Q ss_pred             hh
Q 019879          252 LF  253 (334)
Q Consensus       252 vf  253 (334)
                      -+
T Consensus       123 Py  124 (295)
T 3gru_A          123 PY  124 (295)
T ss_dssp             CG
T ss_pred             cc
Confidence            44

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.10  E-value=3.1e-06  Score=83.46  Aligned_cols=96  Identities=9%  Similarity=0.050  Sum_probs=66.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc----hhhhhccc-CC-CCCCccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG----IYHDWCEA-FS-TYPRTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~----~~~d~~e~-l~-~yp~sFDlVha~  250 (334)
                      ..+|||++||+|.|+..++.+.--+..|+++|+++.+++.+.+.    |+..    .++..+.. +. .+.+.||+|+++
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            47899999999999998887411125799999999988876543    4321    12211111 12 235789999987


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      - +      +....++....+.|+|||+|+++-
T Consensus       133 P-~------g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          133 P-F------GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             C-S------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-C------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence            3 1      234578889999999999998864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.09  E-value=2.3e-06  Score=82.76  Aligned_cols=91  Identities=14%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CCC-------------
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TYP-------------  241 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~yp-------------  241 (334)
                      .+|||+|||+|.|+..|+...   ..|+++|+++.+++.+.+.    |+  +..+...++.+. .++             
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            679999999999999998753   3699999999999877643    33  112221111111 111             


Q ss_pred             --CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          242 --RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       242 --~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                        .+||+|+.+      +.+.   .+..++.+.|+|+|.+++...
T Consensus       292 ~~~~fD~Vv~d------PPr~---g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          292 KSYQCETIFVD------PPRS---GLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             GGCCEEEEEEC------CCTT---CCCHHHHHHHTTSSEEEEEES
T ss_pred             ccCCCCEEEEC------cCcc---ccHHHHHHHHhCCCEEEEEEC
Confidence              289999876      2221   234567788888887777653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.06  E-value=1.4e-05  Score=83.26  Aligned_cols=124  Identities=14%  Similarity=0.156  Sum_probs=75.3

Q ss_pred             CCccccchhhhhhHHHHHHHHHHHh-----hc----CCCCCceEeeecccccHH---HHHHHhCCCcEEEEEeccCChhh
Q 019879          150 VSAESYQEDSNKWKKHVNAYKKINR-----LL----DSGRYRNIMDMNAGFGGF---AAAIQSSKLWVMNVVPTLADKNT  217 (334)
Q Consensus       150 ~~~e~f~~d~~~W~~~v~~y~~ll~-----~l----~~~~~r~VLD~GCG~G~f---aa~L~~~~v~v~nVv~vD~s~~~  217 (334)
                      .+.|.|+.|.-+    ...|.+.+.     .+    ...+...|||+|||+|-+   ++.-.+++..-..|.+++.++ |
T Consensus       322 ~tYevFEkD~vK----y~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~  396 (637)
T 4gqb_A          322 QTYEVFEKDPIK----YSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-N  396 (637)
T ss_dssp             HHHHHHTTCHHH----HHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-H
T ss_pred             hhhhhhcCChhh----HHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-H
Confidence            356889888764    233433221     11    123346799999999987   333333333335689999985 4


Q ss_pred             HHHH----HHcCc---cchhhhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879          218 LGVI----YERGL---IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII  280 (334)
Q Consensus       218 L~~a----~~Rgl---i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~li  280 (334)
                      ...+    .+.|+   +.+++...+.+ ..|..+|+|++-. +......+.+..+|.-.+|.|||||.++
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev-~LPEKVDIIVSEw-MG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREW-VAPEKADIIVSEL-LGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTC-CCSSCEEEEECCC-CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceec-cCCcccCEEEEEc-CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            3333    33344   34455444554 4568999999863 2222223456678888999999999864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.04  E-value=2.3e-06  Score=79.34  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=49.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCCh-------hhHHHHHHc----Cc---cchhhhhcccC-CCCC---C
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADK-------NTLGVIYER----GL---IGIYHDWCEAF-STYP---R  242 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~-------~~L~~a~~R----gl---i~~~~d~~e~l-~~yp---~  242 (334)
                      ..+|||+|||+|.++..|+..+.   .|+++|.++       ++++.+.+.    |+   +..++...+.+ +.++   +
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             cCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            46899999999999999998763   689999999       888877543    22   22222222222 2234   6


Q ss_pred             ccceEEechhhcc
Q 019879          243 TYDLIHAHGLFSL  255 (334)
Q Consensus       243 sFDlVha~~vfs~  255 (334)
                      +||+|+++-.|.+
T Consensus       161 ~fD~V~~dP~~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPMYPE  173 (258)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CccEEEECCCCCC
Confidence            8999999877765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.00  E-value=2.2e-05  Score=74.66  Aligned_cols=119  Identities=13%  Similarity=0.070  Sum_probs=70.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCC-C--Cccc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTY-P--RTYD  245 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~y-p--~sFD  245 (334)
                      ......+|||+|||+|+.+..|++.  +.  ..|+++|+++.+++.+.++    |+  +...+.....+++. +  .+||
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~--g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCC
Confidence            3334579999999999999888773  21  3599999999999877654    44  22222222223322 1  5799


Q ss_pred             eEEec------hhhccccC--------cCCH-------HHHHHHHHHhhcCCeEEEEEeCh----hhHHHHHHHHhcc
Q 019879          246 LIHAH------GLFSLYKD--------KCNI-------EDILLEMDRILRPEGAIIIRDEV----DEIIKVKKIVGGM  298 (334)
Q Consensus       246 lVha~------~vfs~~~~--------~c~~-------~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~~~~~l  298 (334)
                      .|++.      .++..-++        ..++       ..+|....+.|+ ||.++.++-.    +.-..|+.+++..
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~  253 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN  253 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence            99963      23322111        1122       246777888887 9999987532    2233455555543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.99  E-value=2.9e-06  Score=80.33  Aligned_cols=135  Identities=15%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH---cCc-cchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~---Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      ..+|||+|||+|+|+...+++. -+..|+++|++.++...+..   .|. +.....-++ +..++ +.||+|.|..... 
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v~~l~~~~~DvVLSDmApn-  167 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-VFNMEVIPGDTLLCDIGES-  167 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-GGGSCCCCCSEEEECCCCC-
T ss_pred             CCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcc-hhhcCCCCcCEEEecCccC-
Confidence            3689999999999999777542 24578899987553111110   010 001111111 11344 8999999987665 


Q ss_pred             ccCc-CC---HHHHHHHHHHhhcCC--eEEEEEeCh-------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          256 YKDK-CN---IEDILLEMDRILRPE--GAIIIRDEV-------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       256 ~~~~-c~---~~~~L~Em~RVLRPG--G~lii~D~~-------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      --.. -|   ...+|.=..++||||  |.|++---.       +.++.++..+.+.+..  .+-+-  ....|.|++|+.
T Consensus       168 sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~--KPaSR--~~S~E~Y~V~~~  243 (282)
T 3gcz_A          168 SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVR--VPLSR--NSTHEMYWVSGT  243 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEEC--CTTSC--TTCCCEEEETTC
T ss_pred             CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEE--cCCCc--ccCcceeEEEec
Confidence            2111 01   113455557899999  999997543       2445555555554432  22111  225789998865

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.94  E-value=1e-05  Score=75.82  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc---cchhhhhcccCCCCC--CccceEEech
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL---IGIYHDWCEAFSTYP--RTYDLIHAHG  251 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl---i~~~~d~~e~l~~yp--~sFDlVha~~  251 (334)
                      ..... +|||+|||+|.++..|++.+   ..|+++|.+++|++.+.++--   +..++.....+ +++  ..||.|+++.
T Consensus        44 ~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~-~~~~~~~~~~iv~Nl  118 (271)
T 3fut_A           44 RPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLY-PWEEVPQGSLLVANL  118 (271)
T ss_dssp             CCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGS-CGGGSCTTEEEEEEE
T ss_pred             CCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhC-ChhhccCccEEEecC
Confidence            33345 89999999999999999986   369999999999998887632   22233222222 233  3789999984

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.93  E-value=1.5e-05  Score=73.91  Aligned_cols=46  Identities=9%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +......+|||+|||+|.++..|++++   ..|+++|++++|++.+.++
T Consensus        25 ~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~   70 (255)
T 3tqs_A           25 IHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKK   70 (255)
T ss_dssp             HCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHH
T ss_pred             cCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHH
Confidence            333445799999999999999999886   4699999999999988775

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.87  E-value=0.00015  Score=74.15  Aligned_cols=142  Identities=17%  Similarity=0.137  Sum_probs=81.2

Q ss_pred             ceEeeecccccHHHHHHHhC----C--C--------cEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-C--CCC
Q 019879          182 RNIMDMNAGFGGFAAAIQSS----K--L--------WVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-F--STY  240 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~----~--v--------~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l--~~y  240 (334)
                      .+|||.+||+|+|...+.+.    .  .        ...++.|+|+++.++.+|...    |+.....-.+.+ +  +.+
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            48999999999997765431    0  0        025799999999988877643    432111001112 1  234


Q ss_pred             C-CccceEEechhhcc-------------------------ccCcCC-HHHHHHHHHHhhcCCeEEEEEeChh-------
Q 019879          241 P-RTYDLIHAHGLFSL-------------------------YKDKCN-IEDILLEMDRILRPEGAIIIRDEVD-------  286 (334)
Q Consensus       241 p-~sFDlVha~~vfs~-------------------------~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~-------  286 (334)
                      + ..||+|+++-=|..                         +..... --.++..+.+.|+|||.+.+--+..       
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~  405 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTN  405 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGG
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcc
Confidence            4 78999999844432                         110111 1258899999999999977664432       


Q ss_pred             hHHHHHHHHhcccceEEEecCCCC----CCCCceEEEEEec
Q 019879          287 EIIKVKKIVGGMRWDTKMVDHEDG----PLVPEKILVAVKQ  323 (334)
Q Consensus       287 ~~~~i~~~~~~l~W~~~~~~~~~~----~~~~e~~l~~~K~  323 (334)
                      .-.+|++.+-.-..-..+.....+    ...+--|||.+|.
T Consensus       406 ~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~  446 (544)
T 3khk_A          406 NEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKD  446 (544)
T ss_dssp             GHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESC
T ss_pred             hHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecC
Confidence            224566654333333333222221    2234567777764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.83  E-value=8.5e-05  Score=79.41  Aligned_cols=143  Identities=10%  Similarity=0.003  Sum_probs=83.3

Q ss_pred             CceEeeecccccHHHHHHHhCC--CcEEEEEeccCChhhHHHHHHc----------Ccc--chhhhhcccCCCCC-Cccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSK--LWVMNVVPTLADKNTLGVIYER----------GLI--GIYHDWCEAFSTYP-RTYD  245 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~--v~v~nVv~vD~s~~~L~~a~~R----------gli--~~~~d~~e~l~~yp-~sFD  245 (334)
                      ..+|||.|||+|+|+.++++.-  ....++.|+|+++.++..|..|          |..  ....+........+ ..||
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            4689999999999999887642  1124689999999999888322          110  01111111111223 7899


Q ss_pred             eEEechhhccc-c------------------------CcCC-HHHHHHHHHHhhcCCeEEEEEeChhhH-------HHHH
Q 019879          246 LIHAHGLFSLY-K------------------------DKCN-IEDILLEMDRILRPEGAIIIRDEVDEI-------IKVK  292 (334)
Q Consensus       246 lVha~~vfs~~-~------------------------~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~-------~~i~  292 (334)
                      +|+++-=|... .                        ...+ ...++..+.+.|||||.+.+--+...+       .+++
T Consensus       402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLR  481 (878)
T 3s1s_A          402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFR  481 (878)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHH
Confidence            99998322110 0                        0011 335788899999999999887766544       3456


Q ss_pred             HHHhcccceEEEecCCC-CCC----CCceEEEEEec
Q 019879          293 KIVGGMRWDTKMVDHED-GPL----VPEKILVAVKQ  323 (334)
Q Consensus       293 ~~~~~l~W~~~~~~~~~-~~~----~~e~~l~~~K~  323 (334)
                      +.+-.-..-..+.+... .-+    ..--||+.+|.
T Consensus       482 k~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~  517 (878)
T 3s1s_A          482 EFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKG  517 (878)
T ss_dssp             HHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETT
T ss_pred             HHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcC
Confidence            55433333223333322 111    23457777775

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.82  E-value=2.1e-05  Score=74.98  Aligned_cols=136  Identities=15%  Similarity=0.100  Sum_probs=77.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH---HcCc-cchhhhhcccCCCCC-CccceEEechhhc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY---ERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~---~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ...+|||+||++|+|+..++++. -+..|+++|+..++.....   ..+. +.....-++ +-.++ ..||+|.|....+
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~d-i~~l~~~~~DlVlsD~APn  158 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSN-VFTMPTEPSDTLLCDIGES  158 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-TTTSCCCCCSEEEECCCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCce-eeecCCCCcCEEeecCcCC
Confidence            45899999999999999999852 2456888888643211000   0010 001111111 22344 8999999986554


Q ss_pred             cccCcC-C---HHHHHHHHHHhhcCC-eEEEEEeCh-------hhHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          255 LYKDKC-N---IEDILLEMDRILRPE-GAIIIRDEV-------DEIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       255 ~~~~~c-~---~~~~L~Em~RVLRPG-G~lii~D~~-------~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                       -..+. |   ...+|.=..++|+|| |.|++---.       +.+..++..+.+.+..  .+  -+-+...|.|+||..
T Consensus       159 -sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~--KP--aSR~~S~E~Y~V~~~  233 (300)
T 3eld_A          159 -SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVR--VP--FSRNSTHEMYYISGA  233 (300)
T ss_dssp             -CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEEC--CT--TSCTTCCCEEEESSC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEE--eC--CCCCCChHHeeeccC
Confidence             11110 1   123444447899999 999997543       3445555556554432  22  111225789998865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.82  E-value=1.4e-05  Score=73.86  Aligned_cols=45  Identities=4%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ......+|||+|||+|.++. |.. +.. ..|+++|++++|++.+.++
T Consensus        18 ~~~~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~   62 (252)
T 1qyr_A           18 NPQKGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTH   62 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTC
T ss_pred             CCCCcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHH
Confidence            33345789999999999999 754 311 1289999999999998876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.80  E-value=0.00012  Score=67.28  Aligned_cols=47  Identities=11%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +......+|||+|||+|.++..|++++.  ..|+++|+++.|++.+.++
T Consensus        27 ~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           27 LNIEEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TTCCTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS
T ss_pred             cCCCCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc
Confidence            3334457999999999999999998852  4799999999999998877

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.71  E-value=2.3e-05  Score=74.46  Aligned_cols=48  Identities=23%  Similarity=0.272  Sum_probs=38.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      +......+|||+|||+|+++.+|+++.. ...|+++|.+++|++.+.++
T Consensus        22 L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~   69 (301)
T 1m6y_A           22 LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEK   69 (301)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence            3333457999999999999999988621 14699999999999988875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.70  E-value=2.4e-05  Score=73.50  Aligned_cols=48  Identities=13%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCc-EEEEEeccCChhhHHHHHHc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLW-VMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~-v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ......+|||+|||+|.++..|++.+.. ...|+++|++++|++.+.++
T Consensus        39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~   87 (279)
T 3uzu_A           39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR   87 (279)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred             CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence            3344579999999999999999886421 01289999999999998876

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.67  E-value=3.4e-05  Score=81.22  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             CCccccchhhhhhHHHHHHHHHHHh-hcC-CCCCceEeeecccccHHHHHH--HhC--C--------CcEEEEEeccCCh
Q 019879          150 VSAESYQEDSNKWKKHVNAYKKINR-LLD-SGRYRNIMDMNAGFGGFAAAI--QSS--K--------LWVMNVVPTLADK  215 (334)
Q Consensus       150 ~~~e~f~~d~~~W~~~v~~y~~ll~-~l~-~~~~r~VLD~GCG~G~faa~L--~~~--~--------v~v~nVv~vD~s~  215 (334)
                      .+.|.|+.|.-+-...-++-...+. ..+ ..+...|||+|||+|-+..+.  +.+  +        .....|.+++.++
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp  456 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP  456 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence            3568898887653222222111111 122 123468999999999984321  111  1        1235799999986


Q ss_pred             hhHHH---HHHcCc---cchhhhhcccCCC-----CCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEE
Q 019879          216 NTLGV---IYERGL---IGIYHDWCEAFST-----YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAII  280 (334)
Q Consensus       216 ~~L~~---a~~Rgl---i~~~~d~~e~l~~-----yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~li  280 (334)
                      .+...   ....|+   +.+++...+.+..     -+...|+|++-.+ ..+.+.+.....|.-++|.|||||.+|
T Consensus       457 ~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          457 NAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            54322   222343   3344444444321     1578999999743 332223445678888899999999865

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.66  E-value=2.3e-05  Score=73.05  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH-------HHc----C-c---cchhhhhccc-CCCCCCccc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI-------YER----G-L---IGIYHDWCEA-FSTYPRTYD  245 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a-------~~R----g-l---i~~~~d~~e~-l~~yp~sFD  245 (334)
                      .+|||++||+|.++..|+.++.   .|+++|.++.+..++       .+.    + +   +..++..... +..++.+||
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD  166 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence            6899999999999999998764   589999998653322       211    1 1   1122222222 333456799


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEG  277 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG  277 (334)
                      +|+++-.|.+-. .   ..++++..|+||+.|
T Consensus       167 vV~lDP~y~~~~-~---saavkk~~~~lr~l~  194 (258)
T 2oyr_A          167 VVYLDPMFPHKQ-K---SALVKKEMRVFQSLV  194 (258)
T ss_dssp             EEEECCCCCCCC-C--------HHHHHHHHHS
T ss_pred             EEEEcCCCCCcc-c---chHHHHHHHHHHHhh
Confidence            999997776521 1   256677778888876

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.65  E-value=1.8e-05  Score=78.48  Aligned_cols=102  Identities=14%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc------Cc--cchhhhhcccC-CCCC-CccceEEec
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------GL--IGIYHDWCEAF-STYP-RTYDLIHAH  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R------gl--i~~~~d~~e~l-~~yp-~sFDlVha~  250 (334)
                      ..+|||+|||+|.++.+|+..+   ..|+++|.++.|+..+.+.      |+  +..++.....+ +.++ ++||+|+++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            4799999999999999998876   3699999999999987654      43  22222222221 1123 689999986


Q ss_pred             hhhccc-----cCcCCHHHHHHHHHHhhcC-CeEEEEEeCh
Q 019879          251 GLFSLY-----KDKCNIEDILLEMDRILRP-EGAIIIRDEV  285 (334)
Q Consensus       251 ~vfs~~-----~~~c~~~~~L~Em~RVLRP-GG~lii~D~~  285 (334)
                      --+..-     -...+...-+.++.+.|+. +..+++.-.+
T Consensus       171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP  211 (410)
T 3ll7_A          171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP  211 (410)
T ss_dssp             CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred             CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence            221110     0011122355666675554 4456665443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.63  E-value=0.00068  Score=66.51  Aligned_cols=85  Identities=11%  Similarity=0.034  Sum_probs=56.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKC  260 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c  260 (334)
                      ..+|||+||++||++..|++++.   .|+++|.. .|-....+-+.+..+......+.+-.+.||+|+|..+.       
T Consensus       212 G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~-~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-------  280 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKRNM---WVYSVDNG-PMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-------  280 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC---EEEEECSS-CCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-------
T ss_pred             CCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhh-hcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-------
Confidence            47999999999999999999974   68999986 45554444333322221111121112689999998544       


Q ss_pred             CHHHHHHHHHHhhcCC
Q 019879          261 NIEDILLEMDRILRPE  276 (334)
Q Consensus       261 ~~~~~L~Em~RVLRPG  276 (334)
                      .+..++.-+.+.|..|
T Consensus       281 ~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          281 KPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             ChHHhHHHHHHHHhcc
Confidence            3566777777777766

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.50  E-value=0.00014  Score=76.42  Aligned_cols=113  Identities=8%  Similarity=0.034  Sum_probs=67.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC------CC-----------------------------------cEEEEEeccCC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS------KL-----------------------------------WVMNVVPTLAD  214 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~------~v-----------------------------------~v~nVv~vD~s  214 (334)
                      ..+.....|||.+||+|+|+...+..      |.                                   .-..|+++|++
T Consensus       186 ~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did  265 (703)
T 3v97_A          186 SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSD  265 (703)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred             hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECC
Confidence            44555678999999999987544321      00                                   00369999999


Q ss_pred             hhhHHHHHHc----Cccc---hhhhhcccC-CCCC-CccceEEechhhcc-ccCcCCHHHH---HHHHHHhhcCCeEEEE
Q 019879          215 KNTLGVIYER----GLIG---IYHDWCEAF-STYP-RTYDLIHAHGLFSL-YKDKCNIEDI---LLEMDRILRPEGAIII  281 (334)
Q Consensus       215 ~~~L~~a~~R----gli~---~~~d~~e~l-~~yp-~sFDlVha~~vfs~-~~~~c~~~~~---L~Em~RVLRPGG~lii  281 (334)
                      +.|+..|.+.    |+..   ..+..+..+ ++++ ++||+|+++-=|.. +....++..+   |.++.+.+.|||.+++
T Consensus       266 ~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          266 ARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence            9999977654    4422   222222222 2333 48999999833321 1112234444   4455555568999888


Q ss_pred             EeChhhH
Q 019879          282 RDEVDEI  288 (334)
Q Consensus       282 ~D~~~~~  288 (334)
                      -.....+
T Consensus       346 lt~~~~l  352 (703)
T 3v97_A          346 FSASPDL  352 (703)
T ss_dssp             EESCHHH
T ss_pred             EeCCHHH
Confidence            7765533

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.50  E-value=0.00061  Score=69.66  Aligned_cols=145  Identities=12%  Similarity=0.060  Sum_probs=82.7

Q ss_pred             CCCceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHH----cCcc-chhhhhccc-C----CCCC-Cccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYE----RGLI-GIYHDWCEA-F----STYP-RTYD  245 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~----Rgli-~~~~d~~e~-l----~~yp-~sFD  245 (334)
                      ....+|||.+||+|+|...+.+.  .....++.|+|+++.++.+|..    +|+. ....-.+.+ +    +.++ ..||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            34579999999999988776553  0112579999999988887754    3431 000001111 2    2234 7899


Q ss_pred             eEEechhhcc-------------------ccCcCC-HHHHHHHHHHhhc-CCeEEEEEeChhhH------HHHHHHHhcc
Q 019879          246 LIHAHGLFSL-------------------YKDKCN-IEDILLEMDRILR-PEGAIIIRDEVDEI------IKVKKIVGGM  298 (334)
Q Consensus       246 lVha~~vfs~-------------------~~~~c~-~~~~L~Em~RVLR-PGG~lii~D~~~~~------~~i~~~~~~l  298 (334)
                      +|+++-=|+.                   +..... --.++..+.+.|+ |||.+.+--+...+      .+|++.+-.-
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~  379 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE  379 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence            9999832221                   000011 1248999999999 99998776554432      3466654333


Q ss_pred             cceEEEecCCCC----CCCCceEEEEEec
Q 019879          299 RWDTKMVDHEDG----PLVPEKILVAVKQ  323 (334)
Q Consensus       299 ~W~~~~~~~~~~----~~~~e~~l~~~K~  323 (334)
                      ..-..+.....+    ...+--|||.+|.
T Consensus       380 ~~l~~II~LP~~lF~~t~i~t~Ilvl~K~  408 (542)
T 3lkd_A          380 GAIDTVIGLPANIFFNTSIPTTVIILKKN  408 (542)
T ss_dssp             TCEEEEEECCSSCSSSCCCCEEEEEECSS
T ss_pred             CceeEEEEccccccCCCCCcEEEEEEecC
Confidence            333333222222    2234556776664

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.38  E-value=0.00037  Score=64.62  Aligned_cols=138  Identities=13%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             CCceEeeecccccHHHHHHHh--------CCC---cEEEEEeccCCh---hhHHHH-----------HHc----------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--------SKL---WVMNVVPTLADK---NTLGVI-----------YER----------  224 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--------~~v---~v~nVv~vD~s~---~~L~~a-----------~~R----------  224 (334)
                      +..+||++|+|+|..++.+.+        .+-   ...++++++..+   +++..+           .+.          
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            457999999999986655432        120   136788888764   444422           110          


Q ss_pred             --------Ccc--chh-hhhcccCCCCCC----ccceEEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEEeChhhH
Q 019879          225 --------GLI--GIY-HDWCEAFSTYPR----TYDLIHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEVDEI  288 (334)
Q Consensus       225 --------gli--~~~-~d~~e~l~~yp~----sFDlVha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~D~~~~~  288 (334)
                              +.+  ..+ .|..+.++..+.    .||+|+.. .|+--.+.. =-+.+|.+|.|+|||||.|+.......+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~~v  218 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFV  218 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBHHH
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence                    100  011 122222333442    79999875 243211111 0257999999999999999864443322


Q ss_pred             HHHHHHHhcccceEEEecCCCCCCCCceEEEEEecc
Q 019879          289 IKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVKQY  324 (334)
Q Consensus       289 ~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~~  324 (334)
                         ++-+..-.+.+...   .|.-.+-.++.+.|..
T Consensus       219 ---rr~L~~aGF~v~~~---~g~~~kr~m~~a~~~~  248 (257)
T 2qy6_A          219 ---RRGLQEAGFTMQKR---KGFGRKREMLCGVMEQ  248 (257)
T ss_dssp             ---HHHHHHHTEEEEEE---CCSTTCCCEEEEEEC-
T ss_pred             ---HHHHHHCCCEEEeC---CCCCCCCceEEEEecC
Confidence               33333344555432   2222455688888753

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.35  E-value=0.00047  Score=65.57  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc------Cc-----cchhhhhcccCC-CCCCcc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER------GL-----IGIYHDWCEAFS-TYPRTY  244 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R------gl-----i~~~~d~~e~l~-~yp~sF  244 (334)
                      ...++++||=+|-|.|+.+..+++.. .+..|+-+|+++..++++++-      |.     ..++.+.+-.+. ..+++|
T Consensus        80 ~~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~y  158 (294)
T 3o4f_A           80 AHGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTF  158 (294)
T ss_dssp             HSSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCE
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccC
Confidence            34567999999999999999998863 234678888888888877553      11     011111111111 223899


Q ss_pred             ceEEechhhccccCc-CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDK-CNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~-c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|+....=...... ---..++..+.|+|+|||.++..-
T Consensus       159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            999876321110000 011378999999999999999863

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.23  E-value=0.00089  Score=57.95  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=56.7

Q ss_pred             ceEeeeccccc-HHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-CCCCC---CccceEEechhhcc
Q 019879          182 RNIMDMNAGFG-GFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-FSTYP---RTYDLIHAHGLFSL  255 (334)
Q Consensus       182 r~VLD~GCG~G-~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l~~yp---~sFDlVha~~vfs~  255 (334)
                      .+|||+|||.| ..|..|++ .+   .+|+++|+++..++         .+   +.+ |.+..   ..||+|++.     
T Consensus        37 ~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~---------~v---~dDiF~P~~~~Y~~~DLIYsi-----   96 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG---------IV---RDDITSPRMEIYRGAALIYSI-----   96 (153)
T ss_dssp             SEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT---------EE---CCCSSSCCHHHHTTEEEEEEE-----
T ss_pred             CcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc---------eE---EccCCCCcccccCCcCEEEEc-----
Confidence            69999999999 69999997 77   47999999976655         11   122 22332   489999875     


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                       ....++...+.++.+-.  |.-++|+..
T Consensus        97 -rPP~El~~~i~~lA~~v--~adliI~pL  122 (153)
T 2k4m_A           97 -RPPAEIHSSLMRVADAV--GARLIIKPL  122 (153)
T ss_dssp             -SCCTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred             -CCCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence             33456778888887754  556777753

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.91  E-value=0.0037  Score=58.91  Aligned_cols=135  Identities=12%  Similarity=0.146  Sum_probs=78.3

Q ss_pred             CCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChh--------------------------hHHHHH----H
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKN--------------------------TLGVIY----E  223 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~--------------------------~L~~a~----~  223 (334)
                      .....+||.+|+..|..+..|+.    .+.....|+.+|.-+.                          .++.+.    +
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            34467999999999997666543    1110123566663210                          222222    2


Q ss_pred             cCc----cchhhhhc-ccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh---hhHHHHHHH
Q 019879          224 RGL----IGIYHDWC-EAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---DEIIKVKKI  294 (334)
Q Consensus       224 Rgl----i~~~~d~~-e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~~  294 (334)
                      -|+    +.....++ +.++.++ .+||+||...-.  +   ......|..+.+.|+|||++++.|-.   ...+.+.++
T Consensus       184 ~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y---~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef  258 (282)
T 2wk1_A          184 YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y---ESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEY  258 (282)
T ss_dssp             TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H---HHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHH
T ss_pred             cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c---ccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            233    22222222 3455666 899999986311  1   11346788999999999999988742   245567777


Q ss_pred             HhcccceEEEecCCCCCCCCceEEEEEec
Q 019879          295 VGGMRWDTKMVDHEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       295 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  323 (334)
                      .+...+...+....      ...++++|.
T Consensus       259 ~~~~~i~~~i~~~~------~~~v~~rk~  281 (282)
T 2wk1_A          259 RAKFDIADELITID------RDGVYWQRT  281 (282)
T ss_dssp             HHHTTCCSCCEECS------SSCEEEECC
T ss_pred             HHhcCCceEEEEec------CEEEEEEeC
Confidence            77777665543322      235666663

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.82  E-value=0.0018  Score=63.60  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=71.6

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--cc------------chhhhhc----ccCCC
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--LI------------GIYHDWC----EAFST  239 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--li------------~~~~d~~----e~l~~  239 (334)
                      ..+.++||=+|-|.|+.++.+++.+.  ..|+.+|+.+..++++++--  ..            ....+.+    +....
T Consensus       203 ~~~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          203 DYTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CCTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            34568999999999999999998764  46788888888888876531  00            0011000    00000


Q ss_pred             CCCccceEEechhhccc--cCcC------CHHHHHHHHHHhhcCCeEEEEEeC----hhhHHHHHHHHhcc
Q 019879          240 YPRTYDLIHAHGLFSLY--KDKC------NIEDILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGGM  298 (334)
Q Consensus       240 yp~sFDlVha~~vfs~~--~~~c------~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~~~~~l  298 (334)
                      -.+.||+|+... +...  ....      --..++..+.|+|+|||.++..-.    .+....+.+.++++
T Consensus       281 ~~~~yDvIIvDl-~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v  350 (381)
T 3c6k_A          281 EGREFDYVINDL-TAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL  350 (381)
T ss_dssp             HTCCEEEEEEEC-CSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred             ccCceeEEEECC-CCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence            125799998762 1110  0000      013678889999999999987532    23344455555554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.81  E-value=0.0016  Score=63.28  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=66.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--------chhhhhcccCCC-CCC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--------GIYHDWCEAFST-YPR  242 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--------~~~~d~~e~l~~-yp~  242 (334)
                      |+.....+||||.||.||=+.+|++.+. ...|+++|.++.-+..+.++    |..        .+.......++. .++
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence            4555668999999999999988888642 24699999998766654432    221        111111111222 348


Q ss_pred             ccceEEe----ch----hhcccc---CcC---C---H----HHHHHHHHHhhcCCeEEEEEe
Q 019879          243 TYDLIHA----HG----LFSLYK---DKC---N---I----EDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       243 sFDlVha----~~----vfs~~~---~~c---~---~----~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +||.|.+    +.    ++..-+   .+.   +   +    ..+|....+.|||||.|+-++
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            9999984    32    221100   000   0   1    267888889999999999986

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.76  E-value=0.0027  Score=57.10  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=61.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCc-----cchhhhhcc-c--------------
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGL-----IGIYHDWCE-A--------------  236 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgl-----i~~~~d~~e-~--------------  236 (334)
                      .++||++|||+  -+..|++..  ...|+.+|.+++..+.+.+    .|+     +...+..+. .              
T Consensus        31 a~~VLEiGtGy--STl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           31 AEVILEYGSGG--STVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             CSEEEEESCSH--HHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCEEEEECchH--HHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            47999999974  344444431  2468999999887776543    243     222222111 1              


Q ss_pred             CC-------CCC--CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh--hHHHHHHHHh
Q 019879          237 FS-------TYP--RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD--EIIKVKKIVG  296 (334)
Q Consensus       237 l~-------~yp--~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~~~~  296 (334)
                      ++       .++  ++||+|+...-+        ....+.+..+.|||||.+++.+-..  ....++++++
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k--------~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~  169 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF--------RVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLG  169 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS--------HHHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHC
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC--------chhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHh
Confidence            11       133  789999886422        2355666779999999996655221  2334455544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.65  E-value=0.0026  Score=59.62  Aligned_cols=132  Identities=15%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChh--hHHHHHH-cCc--cchhhhhcccCCCC-CCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN--TLGVIYE-RGL--IGIYHDWCEAFSTY-PRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~--~L~~a~~-Rgl--i~~~~d~~e~l~~y-p~sFDlVha~~vfs  254 (334)
                      ..+|||+||+.|++....+++. -+..|.+.++..+  +.+.... .|.  +.+...  .+|-.. +..||+|.|...=.
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G--~Df~~~~~~~~DvVLSDMAPn  150 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSG--VDVFYKPSEISDTLLCDIGES  150 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS--CCGGGSCCCCCSEEEECCCCC
T ss_pred             CCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeecc--CCccCCCCCCCCEEEeCCCCC
Confidence            4799999999999998888751 1223333333222  1111000 121  111100  022112 36899999984332


Q ss_pred             cccCcC-CHH---HHHHHHH-HhhcCCe-EEEEEeC----hhh---HHHHHHHHhcccceEEEecCCCCCCCCceEEEEE
Q 019879          255 LYKDKC-NIE---DILLEMD-RILRPEG-AIIIRDE----VDE---IIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAV  321 (334)
Q Consensus       255 ~~~~~c-~~~---~~L~Em~-RVLRPGG-~lii~D~----~~~---~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~  321 (334)
                       -.++. |..   .+| +|. ++|+||| .|++--.    .+.   ++.++..+.+..  ++.+-+-+  ...|.|+++.
T Consensus       151 -SG~~~vD~~Rs~~aL-~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vk--vk~paSR~--~S~E~YlVa~  224 (269)
T 2px2_A          151 -SPSAEIEEQRTLRIL-EMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGL--VRVPLSRN--SNHEMYWVSG  224 (269)
T ss_dssp             -CSCHHHHHHHHHHHH-HHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEE--ECCTTSCT--TCCCEEEETT
T ss_pred             -CCccHHHHHHHHHHH-HHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEE--EECCCCCC--CCccEEEEec
Confidence             11110 111   234 444 8999999 8887532    333   345566566644  23222222  2478888874

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.60  E-value=0.0074  Score=57.83  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             CCceEeeecc------cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechh
Q 019879          180 RYRNIMDMNA------GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GC------G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ...+|||+||      -.|++...-.. .+.   -|+++|+.+ +..   ..+  ..+...|..+. ..+.||+|++...
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~---~VVavDL~~-~~s---da~--~~IqGD~~~~~-~~~k~DLVISDMA  178 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLND-FVS---DAD--STLIGDCATVH-TANKWDLIISDMY  178 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSC-CBC---SSS--EEEESCGGGEE-ESSCEEEEEECCC
T ss_pred             CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCc---EEEEeeCcc-ccc---CCC--eEEEccccccc-cCCCCCEEEecCC
Confidence            4589999996      77885433222 222   478888863 321   111  11223343321 1288999998732


Q ss_pred             hc---ccc-Cc---CCHHHHHHHH-HHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          253 FS---LYK-DK---CNIEDILLEM-DRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       253 fs---~~~-~~---c~~~~~L~Em-~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      =.   +.. +.   ..+.....|+ .++|+|||.|++--... .-+.+.++.+.+.+-......-. ....|.+|+++.
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~VK~fK~ASR-a~SsEvYLVG~g  256 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVN-ASSSEAFLIGAN  256 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGG-TTSSCEEEEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCeEEEECCCCC-CCCeeEEEEeee
Confidence            21   111 11   1244555555 45899999999974321 11233444443332222212111 235899999975

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.30  E-value=0.0048  Score=57.54  Aligned_cols=42  Identities=17%  Similarity=-0.027  Sum_probs=37.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ....|||.+||+|.++.++...+   .+++++|+++.+++++.+|
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKER  276 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence            45789999999999999988877   4799999999999998876

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.67  E-value=0.026  Score=53.97  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH-----HHHHcCccchhhh-hcccCCCCCCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG-----VIYERGLIGIYHD-WCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~-----~a~~Rgli~~~~d-~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ..+|||+||++|+|..+.+... -+..|.++|.-..--+     ..+.-.++..... ....+++  ..+|+|+|...=+
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDigeS  171 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIGES  171 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCCCC
T ss_pred             CCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECccC
Confidence            3599999999999999666542 2457999998643100     0000011111100 0012222  6699999985422


Q ss_pred             cccCcC-CHH---HHHHHHHHhhcCC-eEEEEEeC----hhhHHHHHHH
Q 019879          255 LYKDKC-NIE---DILLEMDRILRPE-GAIIIRDE----VDEIIKVKKI  294 (334)
Q Consensus       255 ~~~~~c-~~~---~~L~Em~RVLRPG-G~lii~D~----~~~~~~i~~~  294 (334)
                      . .+.. +-+   .+|.=+-+.|++| |-|++--.    .+++++++.+
T Consensus       172 s-~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~l  219 (321)
T 3lkz_A          172 S-SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELL  219 (321)
T ss_dssp             C-SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHH
T ss_pred             C-CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHH
Confidence            2 1111 111   3444446889999 88888643    3455555554

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.23  E-value=0.19  Score=51.00  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=77.8

Q ss_pred             CCCCCceEeeecccccHHHHHHHh----CCC--------cEEEEEeccCChhhHHHHHH----cCccchhhhhcccCC--
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQS----SKL--------WVMNVVPTLADKNTLGVIYE----RGLIGIYHDWCEAFS--  238 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~----~~v--------~v~nVv~vD~s~~~L~~a~~----Rgli~~~~d~~e~l~--  238 (334)
                      ......+|+|-.||+|+|.....+    ...        .-.++.|.|..+.+..++.-    +|...........+.  
T Consensus       214 ~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~  293 (530)
T 3ufb_A          214 DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFP  293 (530)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSC
T ss_pred             ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCc
Confidence            334456899999999999765433    111        01358999999888776643    232110000111111  


Q ss_pred             ---CCC-CccceEEechhhcc---------cc---CcCCHH-HHHHHHHHhhc-------CCeEEEEEeChhhH------
Q 019879          239 ---TYP-RTYDLIHAHGLFSL---------YK---DKCNIE-DILLEMDRILR-------PEGAIIIRDEVDEI------  288 (334)
Q Consensus       239 ---~yp-~sFDlVha~~vfs~---------~~---~~c~~~-~~L~Em~RVLR-------PGG~lii~D~~~~~------  288 (334)
                         ..+ ..||+|+++-=|+.         +.   ...+.. .++.-+.+.||       |||.+.+--+..++      
T Consensus       294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~  373 (530)
T 3ufb_A          294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS  373 (530)
T ss_dssp             GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHH
T ss_pred             hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchH
Confidence               112 57999999844431         10   011122 35566777776       79987776554322      


Q ss_pred             HHHHHHHhcccceEEEecCCCCCC-----CCceEEEEEec
Q 019879          289 IKVKKIVGGMRWDTKMVDHEDGPL-----VPEKILVAVKQ  323 (334)
Q Consensus       289 ~~i~~~~~~l~W~~~~~~~~~~~~-----~~e~~l~~~K~  323 (334)
                      .+|++.+-.-+.-..+.....+-+     .+--|||.+|+
T Consensus       374 ~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~  413 (530)
T 3ufb_A          374 ARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRS  413 (530)
T ss_dssp             HHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESS
T ss_pred             HHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECC
Confidence            345555433344333333322222     34467888775

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.18  E-value=0.01  Score=70.42  Aligned_cols=98  Identities=11%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             CceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcc------cCCCC-CCccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCE------AFSTY-PRTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e------~l~~y-p~sFDlVha  249 (334)
                      ..+||.+|+|+|+....+.+    .+....+.+-.|+|+...+.+.++-  .. .+...      ...++ +.+||+|++
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f--~~-~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKL--EQ-LHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTH--HH-HTEEEECCCSSCCCC-----CCEEEE
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHh--hh-cccccccccccccccCCCCceeEEEE
Confidence            46899999999986544332    1222346777888866655444431  00 01000      11123 378999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++++|...   ++...|..+.++|||||++++.+.
T Consensus      1318 ~~vl~~t~---~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1318 NCALATLG---DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             ECC-----------------------CCEEEEEEC
T ss_pred             cccccccc---cHHHHHHHHHHhcCCCcEEEEEec
Confidence            99996432   467899999999999999999764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=95.14  E-value=0.021  Score=54.01  Aligned_cols=45  Identities=18%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE  223 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~  223 (334)
                      +.......++|++||.|+.+.+|++++   ..|+++|.++.++..+.+
T Consensus        18 L~~~~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           18 LAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh
Confidence            444445799999999999999999974   369999999999987765

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.12  E-value=0.25  Score=46.97  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch-hhhhcccCCCCC-CccceEEec---hhhccc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFSTYP-RTYDLIHAH---GLFSLY  256 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d~~e~l~~yp-~sFDlVha~---~vfs~~  256 (334)
                      .+|+|+-||.|++...+...|+.  .|.++|.++..++..... .... ..|.. .+..-. ..+|+|+++   .-||..
T Consensus        12 ~~~~dLFaG~Gg~~~g~~~aG~~--~v~~~e~d~~a~~t~~~N-~~~~~~~Di~-~~~~~~~~~~D~l~~gpPCQ~fS~a   87 (327)
T 2c7p_A           12 LRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMN-FGEKPEGDIT-QVNEKTIPDHDILCAGFPCQAFSIS   87 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHH-HSCCCBSCGG-GSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred             CcEEEECCCcCHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHH-cCCCCcCCHH-HcCHhhCCCCCEEEECCCCCCcchh
Confidence            58999999999999999998864  478899987776654432 1111 11211 121111 358999987   234422


Q ss_pred             c------C-cCCHHHHHHHHHHhhcCCeEEEEEeCh---------hhHHHHHHHHh----cccceEEEecCCCCCCCCce
Q 019879          257 K------D-KCNIEDILLEMDRILRPEGAIIIRDEV---------DEIIKVKKIVG----GMRWDTKMVDHEDGPLVPEK  316 (334)
Q Consensus       257 ~------~-~c~~~~~L~Em~RVLRPGG~lii~D~~---------~~~~~i~~~~~----~l~W~~~~~~~~~~~~~~e~  316 (334)
                      -      + +..+-.-+.++-+.+||-  +++-+++         ..++.|.+.+.    .+.|.+-....-..|+.+++
T Consensus        88 g~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R  165 (327)
T 2c7p_A           88 GKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRER  165 (327)
T ss_dssp             SCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEE
T ss_pred             cccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceE
Confidence            1      1 112333333444456894  4444332         12333333333    44455432222234667777


Q ss_pred             EEE-EEe
Q 019879          317 ILV-AVK  322 (334)
Q Consensus       317 ~l~-~~K  322 (334)
                      +++ +.+
T Consensus       166 ~~iv~~~  172 (327)
T 2c7p_A          166 IYMICFR  172 (327)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEe
Confidence            654 544

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=94.28  E-value=0.37  Score=44.86  Aligned_cols=110  Identities=13%  Similarity=0.032  Sum_probs=58.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHcCcc-chhhhh--cccCCCCCCccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLI-GIYHDW--CEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~Rgli-~~~~d~--~e~l~~yp~sFDlVha~~vfs  254 (334)
                      ..+|||+||++|+|..+.+... -+..|.++|.-..--+   .....|-. ..+..-  ...+++  ..||+|.|...=+
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIgeS  155 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIGES  155 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCCCC
T ss_pred             CCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEecCCC
Confidence            3699999999999999666542 2457999998632100   00011111 111110  012333  6699999984443


Q ss_pred             cccCcCCHH---HHHHHHHHhhcCCeEEEEEeC----hhhHHHHHHH
Q 019879          255 LYKDKCNIE---DILLEMDRILRPEGAIIIRDE----VDEIIKVKKI  294 (334)
Q Consensus       255 ~~~~~c~~~---~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~~  294 (334)
                      .-...-+-+   .+|.=+-+.|++ |-|++--.    ++++++++.+
T Consensus       156 s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~l  201 (267)
T 3p8z_A          156 SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERL  201 (267)
T ss_dssp             CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHH
T ss_pred             CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHH
Confidence            211111111   244444678888 78888642    2355555544

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.24  E-value=0.16  Score=48.40  Aligned_cols=137  Identities=13%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCC--CC-CccceEEech---hhc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFST--YP-RTYDLIHAHG---LFS  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~--yp-~sFDlVha~~---vfs  254 (334)
                      .+|+|+-||.|++...+...|...-.|.++|.++..++.....-- ...+......+.+  ++ ..+|+|+++.   -||
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            479999999999999998887433458999999887776554321 1111111112211  12 2689999872   243


Q ss_pred             cccCc---CC-HHHHHHHHHHhh---c--CCeEEEEEeCh------hhHHHHHHHHhcccceEE--EecC--CCCCCCCc
Q 019879          255 LYKDK---CN-IEDILLEMDRIL---R--PEGAIIIRDEV------DEIIKVKKIVGGMRWDTK--MVDH--EDGPLVPE  315 (334)
Q Consensus       255 ~~~~~---c~-~~~~L~Em~RVL---R--PGG~lii~D~~------~~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e  315 (334)
                      ..-..   .+ -..++.|+.|++   +  |- ++++ +++      ...+.|.+.+..+..++.  +.+.  -.-|+.++
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~-~~~~-ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~  160 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILL-ENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRL  160 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCCS-EEEE-EEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCC
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHhcCCCC-EEEE-eCCccccCHHHHHHHHHHHHHCCCeeEEEEEEHHHCCCCCccc
Confidence            22111   11 113555565655   4  65 3333 322      234445555555544433  2222  22466677


Q ss_pred             eEEEE
Q 019879          316 KILVA  320 (334)
Q Consensus       316 ~~l~~  320 (334)
                      ++++.
T Consensus       161 R~~iv  165 (343)
T 1g55_A          161 RYFLI  165 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.18  E-value=0.15  Score=47.28  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHhhcCCeEEEEE
Q 019879          262 IEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +..++.|+.|+|||||.+++.
T Consensus        76 l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           76 LDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            356889999999999999876

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.17  E-value=0.095  Score=49.70  Aligned_cols=92  Identities=14%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCC-CCCccceEEechh
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFST-YPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~-yp~sFDlVha~~v  252 (334)
                      ...+||-+|||. |.++..+++ .+..  .|+.+|.+++.++.+.+.|....+  .  ++.+.+.. .++.||+|+-.. 
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~-  266 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST-  266 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC-
Confidence            457999999986 667777765 3531  478888888888888877742211  1  11111111 113689886431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                              .-...+.+..+.|||||.+++.
T Consensus       267 --------g~~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          267 --------GSPEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             --------CCHHHHHHHHHTEEEEEEEEEC
T ss_pred             --------CCHHHHHHHHHHHhcCCEEEEe
Confidence                    1245788999999999999875

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.02  E-value=0.93  Score=42.02  Aligned_cols=136  Identities=12%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEec---hhhcccc-
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH---GLFSLYK-  257 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~---~vfs~~~-  257 (334)
                      +|+|+=||.|+|...|.+.|+.+  |.++|+++...+.-...--...+......+..-. ..+|+++++   .-||..- 
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~--v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~   79 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRI--ICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS   79 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEE--EEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEE--EEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence            69999999999999999988754  6788888766654332211111111111222212 468999876   3444321 


Q ss_pred             --CcCCH-HHHHHHHHHh---hcCCeEEEEEeCh---------hhHHHHHHHHhc----ccceEEEecCCCCCCCCceE-
Q 019879          258 --DKCNI-EDILLEMDRI---LRPEGAIIIRDEV---------DEIIKVKKIVGG----MRWDTKMVDHEDGPLVPEKI-  317 (334)
Q Consensus       258 --~~c~~-~~~L~Em~RV---LRPGG~lii~D~~---------~~~~~i~~~~~~----l~W~~~~~~~~~~~~~~e~~-  317 (334)
                        ...+. ..++.|+.|+   +||-  +++-+++         ..++.|...+..    +.|.+-....-.-|+.++++ 
T Consensus        80 ~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvf  157 (331)
T 3ubt_Y           80 LRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVF  157 (331)
T ss_dssp             ECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEE
T ss_pred             ccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEE
Confidence              11122 1455555554   6895  4444332         233444333443    44444322223346777776 


Q ss_pred             EEEEe
Q 019879          318 LVAVK  322 (334)
Q Consensus       318 l~~~K  322 (334)
                      +|+.+
T Consensus       158 ivg~r  162 (331)
T 3ubt_Y          158 YIGFR  162 (331)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            45544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.92  E-value=0.21  Score=47.13  Aligned_cols=43  Identities=19%  Similarity=0.464  Sum_probs=29.1

Q ss_pred             CC-CccceEEechhhcc-----ccC------cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          240 YP-RTYDLIHAHGLFSL-----YKD------KCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       240 yp-~sFDlVha~~vfs~-----~~~------~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ++ ++||+|+++-=+..     +.+      .+.+..+|.|+.|+|||||.+++.
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            44 78888887621110     000      013678999999999999999885

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.24  E-value=0.14  Score=46.64  Aligned_cols=42  Identities=12%  Similarity=-0.008  Sum_probs=36.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ....|||..||+|+.+.+..+.+   .+++++|+++..+.++.+|
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFV  253 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHH
Confidence            45789999999999988888776   4689999999998888876

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.04  E-value=0.23  Score=46.84  Aligned_cols=92  Identities=13%  Similarity=0.038  Sum_probs=59.1

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h-----hhcccCCC-CCCccceEEe
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H-----DWCEAFST-YPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~-----d~~e~l~~-yp~sFDlVha  249 (334)
                      ...+||-+|||. |.++..|+. .|.  ..|+.++.+++.++.+.+.|....+  .     ++.+.+.. .++.||+|+-
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid  248 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  248 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence            457899999875 667777765 453  1578888888888888877752211  1     11111100 0146898865


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..         .-...+.+..+.|||||.+++.
T Consensus       249 ~~---------g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          249 CT---------GAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CC---------CChHHHHHHHHHhcCCCEEEEE
Confidence            31         1135678889999999999874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=91.98  E-value=0.9  Score=43.97  Aligned_cols=40  Identities=15%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE  223 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~  223 (334)
                      -+|+|+-||.|+++..|.+.|+.  -|.++|.++..++....
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~--~v~avE~d~~a~~t~~~   42 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFD--VKMAVEIDQHAINTHAI   42 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCE--EEEEECSCHHHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCc--EEEEEeCCHHHHHHHHH
Confidence            37999999999999999988864  37799999777665443

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.90  E-value=0.42  Score=45.54  Aligned_cols=140  Identities=14%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEE-EeccCChhhHHHHHHcCccc-hhhhhcccCCC--CC-CccceEEec---hh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNV-VPTLADKNTLGVIYERGLIG-IYHDWCEAFST--YP-RTYDLIHAH---GL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nV-v~vD~s~~~L~~a~~Rgli~-~~~d~~e~l~~--yp-~sFDlVha~---~v  252 (334)
                      .-+|+|+-||.|++...|.+.|+..--| .++|+++...+..... ... .+......+..  ++ ..+|+++++   .-
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N-~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKN-FKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQP   88 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHH-HCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHH-CCCCcccCChhhcCHHHhccCCCCEEEecCCccC
Confidence            3589999999999999999887422236 6999997666543322 111 11111111111  22 268999876   23


Q ss_pred             h--cccc---CcCCH-HHHHHHHHH-hh-----cCCeEEEEEeCh------hhHHHHHHHHhcccceEE--EecC--CCC
Q 019879          253 F--SLYK---DKCNI-EDILLEMDR-IL-----RPEGAIIIRDEV------DEIIKVKKIVGGMRWDTK--MVDH--EDG  310 (334)
Q Consensus       253 f--s~~~---~~c~~-~~~L~Em~R-VL-----RPGG~lii~D~~------~~~~~i~~~~~~l~W~~~--~~~~--~~~  310 (334)
                      |  |..-   ...+. ..++.|+.| ++     ||  .+++-+++      ...+.|.+.+..+...+.  +.+.  -.-
T Consensus        89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGv  166 (327)
T 3qv2_A           89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGI  166 (327)
T ss_dssp             CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTC
T ss_pred             cccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCC
Confidence            4  3221   11222 267888888 66     45  45555443      233445544555444433  2222  224


Q ss_pred             CCCCceEE-EEEec
Q 019879          311 PLVPEKIL-VAVKQ  323 (334)
Q Consensus       311 ~~~~e~~l-~~~K~  323 (334)
                      |+.+++++ ++.+.
T Consensus       167 PQ~R~R~fivg~r~  180 (327)
T 3qv2_A          167 PNSRTRYYVMARLT  180 (327)
T ss_dssp             SBCCCEEEEEEESS
T ss_pred             CccceEEEEEEEeC
Confidence            66777765 55544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=91.60  E-value=0.51  Score=45.72  Aligned_cols=50  Identities=18%  Similarity=0.034  Sum_probs=37.8

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHH
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVI  221 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a  221 (334)
                      ++..|.......++|..||.|+.+.+|+++-.-...|+++|.++++++.+
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A   98 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA   98 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            33344444557899999999999999988611113699999999999887

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.11  E-value=0.35  Score=45.33  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=58.4

Q ss_pred             CCCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccc
Q 019879          179 GRYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       179 ~~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      ....+||=.|+|. |.++..|++ .|+   +|+.++.+++.++.+.+.|....+.+ .+.   +.+.||+|+-.     .
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~v~~~-~~~---~~~~~D~vid~-----~  242 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGA---EVSVFARNEHKKQDALSMGVKHFYTD-PKQ---CKEELDFIIST-----I  242 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC---EEEEECSSSTTHHHHHHTTCSEEESS-GGG---CCSCEEEEEEC-----C
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHhcCCCeecCC-HHH---HhcCCCEEEEC-----C
Confidence            3457899999875 666666665 453   68888888888998888775332211 111   22478988643     1


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..    ...+.+..+.|||||.+++.
T Consensus       243 g~----~~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          243 PT----HYDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             CS----CCCHHHHHTTEEEEEEEEEC
T ss_pred             Cc----HHHHHHHHHHHhcCCEEEEE
Confidence            11    12566788999999999885

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.56  E-value=0.31  Score=45.50  Aligned_cols=92  Identities=13%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             CCCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCCCCCccceEEechh
Q 019879          179 GRYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ....+||-.|||. |.++..+++ .|+   +|+.++.+++.++.+.+.|....+  .  ++.+.+....+.+|+|+-.. 
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~-  240 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL---RVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA-  240 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC-
Confidence            3457899999975 777777766 454   688889888889988887742221  1  11111100013578775431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                              .-...+.+..+.|||||.+++.
T Consensus       241 --------g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          241 --------VSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             --------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             --------CCHHHHHHHHHHhccCCEEEEe
Confidence                    1246788899999999999885

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.11  E-value=0.66  Score=39.49  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CCCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCC--CCCCccceEEe
Q 019879          179 GRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFS--TYPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~--~yp~sFDlVha  249 (334)
                      ...++||-.|+  |.|..++.++. .|.   +|+.++.+++.++.+.+.|....  +.  +..+.+.  +-.+.+|+|+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~  113 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLN  113 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence            34579999995  45555555544 453   57888888777777766553211  10  1111110  11246999876


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +.  .        ...+.+..+.|||||.+++.-
T Consensus       114 ~~--g--------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          114 SL--A--------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CC--C--------THHHHHHHHTEEEEEEEEECS
T ss_pred             CC--c--------hHHHHHHHHHhccCCEEEEEc
Confidence            41  1        246788999999999998754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.81  E-value=0.75  Score=43.48  Aligned_cols=92  Identities=12%  Similarity=-0.001  Sum_probs=57.9

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hhh----hcccCCCC-CCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YHD----WCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d----~~e~l~~y-p~sFDlVha~  250 (334)
                      ...+||-.|+|. |.++..++. .+..  .|+.++.+++.++.+.+.|....  +.+    +.+.+... ++.||+|+-.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~--~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~  268 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  268 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEEC
Confidence            347899999875 556666665 4531  47888888888888887775221  111    11111101 1468988643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                      .         .-...+.+..+.|||| |.+++.
T Consensus       269 ~---------g~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          269 I---------GRLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             S---------CCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             C---------CCHHHHHHHHHHhhcCCcEEEEe
Confidence            1         1135788889999999 998874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=89.74  E-value=0.61  Score=44.03  Aligned_cols=92  Identities=9%  Similarity=-0.078  Sum_probs=58.0

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh----hhcccCCCC-CCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH----DWCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~----d~~e~l~~y-p~sFDlVha~  250 (334)
                      ...+||-.|+|. |.++..|++ .|..  .|+.++.+++.++.+.+.|....  +.    ++.+.+... ++.||+|+-.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~--~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~  267 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGAS--RIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  267 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEEC
Confidence            457899999865 556666655 3431  57888888888888887775322  11    111111101 1468988643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                      .         .-...+.+..+.|||| |.+++.
T Consensus       268 ~---------g~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          268 I---------GNVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             S---------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             C---------CcHHHHHHHHHhhccCCcEEEEE
Confidence            1         1135788899999999 998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=89.72  E-value=0.61  Score=44.09  Aligned_cols=92  Identities=9%  Similarity=-0.034  Sum_probs=58.0

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hhh----hcccCCCC-CCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YHD----WCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d----~~e~l~~y-p~sFDlVha~  250 (334)
                      ...+||-.|+|. |.++..+++ .|.  ..|+.++.+++.++.+.+.|....  +.+    +.+.+... .+.||+|+-.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~  269 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGA--KRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  269 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEEC
Confidence            347899999864 556666655 453  157888888888888887775221  111    11111001 1368988653


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                      .         .-...+.+..+.|||| |.+++.
T Consensus       270 ~---------g~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          270 V---------GNVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             S---------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             C---------CCHHHHHHHHHHhhcCCcEEEEE
Confidence            1         1135788899999999 998874

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=89.31  E-value=0.46  Score=44.41  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             CCceEeeecccc-cHHHHHHHh-C--CCcEEEEEeccCChhhHHHHHHcCccch--hh---hhcccCCCCCCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-S--KLWVMNVVPTLADKNTLGVIYERGLIGI--YH---DWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~--~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~---d~~e~l~~yp~sFDlVha~  250 (334)
                      ...+||-.|+|. |.++..|++ .  |.   .|+.++.+++.++.+.+.|....  +.   ++.+.+ +-.+.||+|+-.
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~-~~g~g~D~vid~  245 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNI---TIVGISRSKKHRDFALELGADYVSEMKDAESLINKL-TDGLGASIAIDL  245 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTC---EEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHH-HTTCCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCC---EEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHh-hcCCCccEEEEC
Confidence            457999999964 556666655 3  53   58889988888888887774221  11   122221 112479998654


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .         .-...+.+..+.|||||.+++.
T Consensus       246 ~---------g~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          246 V---------GTEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             S---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             C---------CChHHHHHHHHHhhcCCEEEEe
Confidence            1         1135788899999999998874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=89.24  E-value=1.2  Score=42.23  Aligned_cols=92  Identities=14%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCC----CCCCccceEEe
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFS----TYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~----~yp~sFDlVha  249 (334)
                      ...+||=.|+|. |.++..|+. .|+  ..|+.++.+++.++.+.+.|....+.    ++.+.+.    ..++.||+|+-
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid  259 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGA--TTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE  259 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence            347899999865 556666665 454  15788888888888888877532211    1111111    11247999864


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .     .    .-...+.+..+.|||||.+++.
T Consensus       260 ~-----~----G~~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          260 C-----A----GVAETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             C-----S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             C-----C----CCHHHHHHHHHHhccCCEEEEE
Confidence            3     1    1146788999999999999885

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.20  E-value=0.36  Score=46.27  Aligned_cols=100  Identities=17%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hh-cccCCC-CC-CccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DW-CEAFST-YP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~-~e~l~~-yp-~sFDlVha~  250 (334)
                      ...+||-+|||. |.++..|++ .|.  ..|+.+|.+++.++.+.+.|.. .+.    ++ .+.+.. .+ +.||+|+-.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~  261 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGA--ACVIVGDQNPERLKLLSDAGFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDA  261 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHTTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCc-EEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            457999999976 777777766 353  1588888888888888877752 111    10 111100 12 369998654


Q ss_pred             hhhccccC-----cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKD-----KCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~-----~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .--..+..     .......+.+..+.|||||.+++.
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            11110000     001124788999999999998763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.08  E-value=0.56  Score=44.63  Aligned_cols=88  Identities=14%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCCCCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ...+||-+|+|. |.++..|+. .|+   .|+.++.+++.++.+.+.|....  +.  ++.+.+.   +.||+|+-..  
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga---~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~--  265 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTV--  265 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECC--
Confidence            357899999875 666666665 454   47888888888888887774221  11  1122221   5789986531  


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                         ..    ...+.+..+.|||||.+++.
T Consensus       266 ---g~----~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          266 ---AA----PHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             ---SS----CCCHHHHHTTEEEEEEEEEC
T ss_pred             ---CC----HHHHHHHHHHhccCCEEEEe
Confidence               10    12466778999999998874

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=89.07  E-value=1.5  Score=41.65  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             cCCCCC-CccceEEechhhccccCcCC-HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCC
Q 019879          236 AFSTYP-RTYDLIHAHGLFSLYKDKCN-IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLV  313 (334)
Q Consensus       236 ~l~~yp-~sFDlVha~~vfs~~~~~c~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~  313 (334)
                      .++.++ ..||+++-.. |+--.+..- -+.+|..|.|.++|||.|.-......   +++-++...+.+....   |.-.
T Consensus       178 ~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~---VRR~L~~aGF~V~k~~---G~g~  250 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLS---VRKSLLTLGFKVGSSR---EIGR  250 (308)
T ss_dssp             HGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHH---HHHHHHHTTCEEEEEE---CC--
T ss_pred             HHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHH---HHHHHHHCCCEEEecC---CCCC
Confidence            344455 5799998753 553222111 15899999999999999986665543   3555667777776542   3334


Q ss_pred             CceEEEEEec
Q 019879          314 PEKILVAVKQ  323 (334)
Q Consensus       314 ~e~~l~~~K~  323 (334)
                      +-..+++.++
T Consensus       251 KReml~A~~~  260 (308)
T 3vyw_A          251 KRKGTVASLK  260 (308)
T ss_dssp             -CEEEEEESS
T ss_pred             CCceeEEecC
Confidence            5567888764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=88.97  E-value=0.55  Score=43.56  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             CCCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh---hhcccCCC-CCCccceEEe
Q 019879          179 GRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH---DWCEAFST-YPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~---d~~e~l~~-yp~sFDlVha  249 (334)
                      ...++||-.||  |.|.+++.++. .|.   +|+.++.+++.++.+.+.|....  +.   ++.+.+.. ..+.+|+|+.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~---~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~  220 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGC---KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFD  220 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEE
Confidence            34579999998  56666666554 554   57888888777877765553111  10   11111100 1246898876


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.-          ...+.+..+.|||||.+++.
T Consensus       221 ~~g----------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          221 NVG----------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             SSC----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            511          13578888999999998874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.93  E-value=0.79  Score=43.31  Aligned_cols=92  Identities=10%  Similarity=-0.046  Sum_probs=58.2

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh----hhcccCCC-CCCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH----DWCEAFST-YPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~----d~~e~l~~-yp~sFDlVha~  250 (334)
                      ...+||=+|||. |.++..|++ .+..  .|+.++.+++.++.+.+.|....  +.    ++.+.+.. .++.||+|+-.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~  268 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  268 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence            347899999874 556666665 3531  47888888888888888775221  11    11111110 11468988643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                      .         .-...+.+..+.|||| |.+++.
T Consensus       269 ~---------g~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          269 A---------GRIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             S---------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             C---------CCHHHHHHHHHHHhcCCCEEEEE
Confidence            1         1145788899999999 998874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=88.51  E-value=0.67  Score=42.68  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             CCCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccc
Q 019879          179 GRYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       179 ~~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      ....+||=.|||. |.++..|++ .|+   +|+.++ +++.++.+.+.|....+.| .+.+   ++.||+|+-..     
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga---~Vi~~~-~~~~~~~~~~lGa~~v~~d-~~~v---~~g~Dvv~d~~-----  207 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGY---VVDLVS-ASLSQALAAKRGVRHLYRE-PSQV---TQKYFAIFDAV-----  207 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEEC-SSCCHHHHHHHTEEEEESS-GGGC---CSCEEEEECC------
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEE-ChhhHHHHHHcCCCEEEcC-HHHh---CCCccEEEECC-----
Confidence            3458999999963 566666665 354   578888 7788888888775333333 3333   67899986431     


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      -     ...+.+..+.|+|||.+++.
T Consensus       208 g-----~~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          208 N-----SQNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             -----------TTGGGEEEEEEEEEE
T ss_pred             C-----chhHHHHHHHhcCCCEEEEE
Confidence            1     12335778999999998876

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.46  E-value=0.85  Score=43.15  Aligned_cols=92  Identities=8%  Similarity=-0.077  Sum_probs=57.8

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh----hhcccCCCC-CCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH----DWCEAFSTY-PRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~----d~~e~l~~y-p~sFDlVha~  250 (334)
                      ...+||=+|||. |.++..|++ .++  ..|+.++.+++.++.+.+.|....  +.    ++.+.+.-. ++.||+|+-.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~  272 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  272 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence            347899999874 556666665 353  157888888888888887775221  11    111111000 1368988643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                           .    .-...+.+..+.|||| |.+++.
T Consensus       273 -----~----G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          273 -----A----GTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             -----S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             -----C----CCHHHHHHHHHHhhcCCCEEEEE
Confidence                 1    1135788999999999 998864

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=88.43  E-value=1  Score=42.97  Aligned_cols=139  Identities=14%  Similarity=0.091  Sum_probs=72.7

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-CccchhhhhcccCCC--CC-CccceEEec---hhhc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFST--YP-RTYDLIHAH---GLFS  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli~~~~d~~e~l~~--yp-~sFDlVha~---~vfs  254 (334)
                      -+++|+=||.|++...|.+.|+..--|.++|.++...+.-... +-...+......+.+  ++ ..+|+++++   .-||
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            4799999999999999988775334578999997666543332 111111111112211  22 368999876   2333


Q ss_pred             ccc---CcCCH-HHHHHHHHHhh---c-CCeEEEEEeCh------hhHHHHHHHHhcccceEE--EecC--CCCCCCCce
Q 019879          255 LYK---DKCNI-EDILLEMDRIL---R-PEGAIIIRDEV------DEIIKVKKIVGGMRWDTK--MVDH--EDGPLVPEK  316 (334)
Q Consensus       255 ~~~---~~c~~-~~~L~Em~RVL---R-PGG~lii~D~~------~~~~~i~~~~~~l~W~~~--~~~~--~~~~~~~e~  316 (334)
                      ..-   ...+. ..++.|+.|++   | |  .+++-+++      ...+.|.+.+..+...+.  +.+.  -.-|+.+++
T Consensus        84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R  161 (333)
T 4h0n_A           84 RNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLR  161 (333)
T ss_dssp             ETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCE
T ss_pred             hhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceE
Confidence            221   11111 13556666665   4 6  45555443      123444444555444432  2222  224666777


Q ss_pred             EE-EEEe
Q 019879          317 IL-VAVK  322 (334)
Q Consensus       317 ~l-~~~K  322 (334)
                      ++ |+.+
T Consensus       162 ~fiva~r  168 (333)
T 4h0n_A          162 YYCTARR  168 (333)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            65 4444

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=88.30  E-value=1.2  Score=41.57  Aligned_cols=91  Identities=14%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h---hhcccCC--CC---CCccceE
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H---DWCEAFS--TY---PRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~---d~~e~l~--~y---p~sFDlV  247 (334)
                      ...+||-.|||. |.++..|+. .|.   .|+.++.+++.++.+.+.|....+  .   ++.+.+.  +-   .+.||+|
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v  244 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  244 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence            347899999874 556666665 453   478888888888888877752211  1   1111110  00   2458988


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +-..         .-...+.+..+.|||||.+++.
T Consensus       245 id~~---------g~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          245 IDCS---------GNEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             EECS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EECC---------CCHHHHHHHHHHHhcCCEEEEE
Confidence            6531         1135678889999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.84  E-value=2.1  Score=39.98  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhcCCCCCceEeeecccc--cHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCC-CCC
Q 019879          166 VNAYKKINRLLDSGRYRNIMDMNAGF--GGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFST-YPR  242 (334)
Q Consensus       166 v~~y~~ll~~l~~~~~r~VLD~GCG~--G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~-yp~  242 (334)
                      ++++.+.+..+......+|.=+|+|.  |.++..|.+.|. ..+|+..|.+++.++.+.+.|.+....   .++.. .-.
T Consensus        18 ~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr~~~~~~~a~~~G~~~~~~---~~~~~~~~~   93 (314)
T 3ggo_A           18 GSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGT---TSIAKVEDF   93 (314)
T ss_dssp             -----------CCCSCSEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEE---SCTTGGGGG
T ss_pred             ccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHCCCcchhc---CCHHHHhhc
Confidence            34444433323333356888899885  236777777774 136899999988888888887642111   11111 114


Q ss_pred             ccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHhc
Q 019879          243 TYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVGG  297 (334)
Q Consensus       243 sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~~  297 (334)
                      ..|+|+..     .+ ......++.++...|+||..++-...  ...++.+++.+..
T Consensus        94 ~aDvVila-----vp-~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~  144 (314)
T 3ggo_A           94 SPDFVMLS-----SP-VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  144 (314)
T ss_dssp             CCSEEEEC-----SC-GGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             cCCEEEEe-----CC-HHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC
Confidence            56888654     22 22467889999999999875543222  2356667666544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=87.81  E-value=1.3  Score=41.19  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             HHHHHHHhhcCCCCCceEeeeccc--ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCC-
Q 019879          167 NAYKKINRLLDSGRYRNIMDMNAG--FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFS-  238 (334)
Q Consensus       167 ~~y~~ll~~l~~~~~r~VLD~GCG--~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~-  238 (334)
                      ..|..+.....-....+||=.|||  .|.+++.++. .|+   +|+.++.+++.++.+.+.|....+  .  ++.+.+. 
T Consensus       131 ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~  207 (340)
T 3gms_A          131 TAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF---RLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVME  207 (340)
T ss_dssp             HHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC---EEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHH
Confidence            344444332333345799999987  5667766665 454   578888877888888776642211  1  1111110 


Q ss_pred             -CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          239 -TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       239 -~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                       +-.+.||+|+-..         . ...+.+..+.|||||.+++.
T Consensus       208 ~~~~~g~Dvvid~~---------g-~~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          208 LTNGIGADAAIDSI---------G-GPDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             HTTTSCEEEEEESS---------C-HHHHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCCcEEEECC---------C-ChhHHHHHHHhcCCCEEEEE
Confidence             1125799987541         1 12334555899999999885

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=87.76  E-value=0.97  Score=42.34  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             CCceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCC--CCCCccceEEech
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFS--TYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~--~yp~sFDlVha~~  251 (334)
                      ...+||=+|+|. |.++..++.. |+  ..|+.+|.+++.++.+.+.|....+  .  ++.+.+.  +-.+.||+|+-. 
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga--~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~-  242 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGA--GRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIA-  242 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC--SSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEEC-
Confidence            457899999875 5566666653 43  1478888888888888887753221  1  1111111  112579998643 


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                          ..    -...+.+..+.|+|||.+++.
T Consensus       243 ----~g----~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          243 ----GG----DVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             ----SS----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             ----CC----ChHHHHHHHHHHhcCCEEEEe
Confidence                11    124788899999999999864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=87.73  E-value=1.7  Score=41.05  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCceEeeec-cc-ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchh---hhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMN-AG-FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIY---HDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~G-CG-~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~---~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ...+||=.| +| .|.++..|++. +.  ..|+.++.+++.++.+.+.|....+   .++.+.+.... +.||+|+-.  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g--~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~--  246 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTD--LTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFST--  246 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEEC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEEC--
Confidence            457899888 44 46677777763 22  3688899888888888877742211   11122211123 679988643  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                             ..-...+.+..+.|||||.+++.
T Consensus       247 -------~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          247 -------THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             -------CCchhhHHHHHHHhcCCCEEEEE
Confidence                   12345788999999999999875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=87.67  E-value=0.32  Score=46.07  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          262 IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +..+|.|+.|+|+|||.+++.-.
T Consensus        85 ~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           85 AKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCeEEEEEcC
Confidence            56889999999999999988743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=87.48  E-value=1.6  Score=42.22  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhcccc-CcC
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK-DKC  260 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~-~~c  260 (334)
                      .+||++|-+.|.++..|...    .+|+.+.-|-.........|+.....   ......+..||+|...     ++ ++.
T Consensus        47 ~~~l~~n~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~d~v~~~-----~Pk~k~  114 (381)
T 3dmg_A           47 ERALDLNPGVGWGSLPLEGR----MAVERLETSRAAFRCLTASGLQARLA---LPWEAAAGAYDLVVLA-----LPAGRG  114 (381)
T ss_dssp             SEEEESSCTTSTTTGGGBTT----BEEEEEECBHHHHHHHHHTTCCCEEC---CGGGSCTTCEEEEEEE-----CCGGGC
T ss_pred             CcEEEecCCCCccccccCCC----CceEEEeCcHHHHHHHHHcCCCcccc---CCccCCcCCCCEEEEE-----CCcchh
Confidence            68999999999877777633    23444433422223333445532111   1112345889998653     22 121


Q ss_pred             --CHHHHHHHHHHhhcCCeEEEEEe-ChhhHHHHHHHHh
Q 019879          261 --NIEDILLEMDRILRPEGAIIIRD-EVDEIIKVKKIVG  296 (334)
Q Consensus       261 --~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~~~~  296 (334)
                        ..+..|.++.+.|+|||.+++.- ..+.++++.+.++
T Consensus       115 ~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~  153 (381)
T 3dmg_A          115 TAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEAR  153 (381)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHH
Confidence              35789999999999999988765 5555666555544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=86.88  E-value=0.9  Score=43.07  Aligned_cols=92  Identities=11%  Similarity=-0.008  Sum_probs=58.1

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh----hhcccCCC-CCCccceEEec
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH----DWCEAFST-YPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~----d~~e~l~~-yp~sFDlVha~  250 (334)
                      ...+||=+|||. |.++..+++ .|+  ..|+.+|.+++.++.+.+.|....  +.    ++.+.+.. .++.||+|+-.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~  270 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGA--SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC  270 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTC--SCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence            457899999864 566666665 353  147888888888998888775221  11    11111100 12468988643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                           .    .-...+.+..+.|||| |.+++.
T Consensus       271 -----~----g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          271 -----I----GNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             -----S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             -----C----CCHHHHHHHHHHhhccCCEEEEE
Confidence                 1    1245788999999997 998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=86.54  E-value=0.88  Score=42.28  Aligned_cols=90  Identities=16%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHH-HcCccch--hh---hhcccCC-CCCCccceEEe
Q 019879          180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIY-ERGLIGI--YH---DWCEAFS-TYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~-~Rgli~~--~~---d~~e~l~-~yp~sFDlVha  249 (334)
                      ...+||-.||  |.|.+++.++. .|.   +|+.++.+++.++.+. +.|....  +.   ++.+.+. ..++.+|+|+.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~---~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~  231 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGC---YVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE  231 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence            4579999998  56666666665 453   5788888877888776 4453211  11   0101100 01246898875


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.         .- ..+.+..+.|+|||.+++.
T Consensus       232 ~~---------g~-~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          232 NV---------GG-KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             SS---------CH-HHHHHHHTTEEEEEEEEEC
T ss_pred             CC---------CH-HHHHHHHHHHhcCCEEEEE
Confidence            41         11 4788889999999999874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=85.66  E-value=0.5  Score=44.67  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCC-CC-CccceEEech
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFST-YP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~-yp-~sFDlVha~~  251 (334)
                      ...+||=.|+|. |.++..+++ .|+   +|+.++.+++.++.+.+.|....+.    ++.+.+.. .+ +.||+|+-..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~  265 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGA---EVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIA  265 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence            457899999775 555666655 454   6788888888888888777522211    11111100 12 4799987541


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      -          ...+.+..+.|||||.+++.
T Consensus       266 g----------~~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          266 G----------GAGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             T----------SSCHHHHHHHEEEEEEEEEE
T ss_pred             C----------hHHHHHHHHHhhcCCEEEEE
Confidence            1          13466778999999999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=85.60  E-value=0.71  Score=43.19  Aligned_cols=91  Identities=13%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h---hhcccCCC-CCCccceEEec
Q 019879          180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H---DWCEAFST-YPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~---d~~e~l~~-yp~sFDlVha~  250 (334)
                      ...+||-.|+  |.|.+++.++. .|.   +|+.++.+++.++.+.+.|....+  .   ++.+.+.. .++.+|+|+.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga---~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~  245 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGY---RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINV  245 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---cEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence            4579999999  56666666655 554   577777776777777766632111  1   00011100 01258988764


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .-         ....+.+..+.|+|||.+++.
T Consensus       246 ~g---------~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          246 SV---------SEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             SS---------CHHHHHHHTTSEEEEEEEEEC
T ss_pred             CC---------cHHHHHHHHHHHhcCCEEEEE
Confidence            11         135788999999999998874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=85.55  E-value=0.5  Score=44.57  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh---hhcccCCCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH---DWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~---d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ...+||-+|+|. |.++..+++ .|.   .|+.++.+++.++.+.+.|....  +.   ++.+.+.   +.||+|+-..-
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga---~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~---~~~D~vid~~g  252 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF---DTFDLIVVCAS  252 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC---SCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh---cCCCEEEECCC
Confidence            347999999864 556666655 353   57888877788888887774221  11   2222222   57899875411


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      -  ..     ...+.+..+.|||||.+++.
T Consensus       253 ~--~~-----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          253 S--LT-----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             C--ST-----TCCTTTGGGGEEEEEEEEEC
T ss_pred             C--Cc-----HHHHHHHHHHhcCCCEEEEe
Confidence            1  00     12455677899999998864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.49  E-value=1.1  Score=41.87  Aligned_cols=91  Identities=15%  Similarity=0.061  Sum_probs=56.9

Q ss_pred             CCceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCCCCCCccceEEechhh
Q 019879          180 RYRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ...+||-.|+| .|.+++.++. .|.   +|+.++.+++.++.+.+.|....+  .  ++.+.+....+.||+|+-..  
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~--  238 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA--  238 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECC--
Confidence            34789999996 3566666655 453   688899888888888776642111  1  11111000003588886541  


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                             .....+.+..+.|||||.+++.
T Consensus       239 -------g~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          239 -------VSKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             -------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             -------CCHHHHHHHHHHhhcCCEEEEe
Confidence                   1135778889999999998874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=85.00  E-value=1.1  Score=42.64  Aligned_cols=101  Identities=17%  Similarity=0.009  Sum_probs=60.7

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch-hhh---hcccCCC-CC-CccceEEech
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI-YHD---WCEAFST-YP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d---~~e~l~~-yp-~sFDlVha~~  251 (334)
                      ...+||-+|||. |.++..|++ .|+.  .|+.+|.+++.++.+.+.|...+ +..   +.+.+.. .+ +.||+|+-..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~  262 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  262 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECC
Confidence            457899999876 667777766 4542  47888888888998888775211 110   1111110 12 4689887542


Q ss_pred             hhccc------cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLY------KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~------~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      --...      .+..+....+.+..++|||||.+++.
T Consensus       263 G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          263 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            11100      00012235788999999999998874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=84.22  E-value=0.57  Score=43.72  Aligned_cols=92  Identities=12%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             CCceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchhh---hhcccCCCC-C-CccceEEechh
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIYH---DWCEAFSTY-P-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~---d~~e~l~~y-p-~sFDlVha~~v  252 (334)
                      ...+||=.|+|. |.++..|++. +.  ..|+.+|.+++.++.+.+.|....+.   ++.+.+... + +.||+|+-.  
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~--~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~--  246 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSA--ARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF--  246 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC--
Confidence            357899999875 5666666653 22  46889999988899888877532211   111111001 2 468888643  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                         .    .-...+.+..+.|+|||.+++.
T Consensus       247 ---~----G~~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          247 ---V----GAQSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             ---S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ---C----CCHHHHHHHHHHHhcCCEEEEE
Confidence               1    1235788999999999999885

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=83.65  E-value=1.7  Score=40.60  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCC--CCCCccceEEech
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFS--TYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~--~yp~sFDlVha~~  251 (334)
                      ...+||-.|+|. |.+++.++. .|.  ..|+.++.+++.++.+.+.|....  +.  ++.+.+.  +-.+.||+|+-..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga--~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~  244 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGA--YPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFS  244 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC--CSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence            457899999963 555666655 453  147888888888888877664211  11  1111111  1124689986541


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                               .....+.+..+.|+|||.+++.
T Consensus       245 ---------g~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          245 ---------GAPKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             ---------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             ---------CCHHHHHHHHHHHhcCCEEEEE
Confidence                     1135788889999999998875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=83.30  E-value=2.4  Score=39.15  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CCCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHH-HHcCccchh--h--hhcccCC-CCCCccceEEe
Q 019879          179 GRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVI-YERGLIGIY--H--DWCEAFS-TYPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a-~~Rgli~~~--~--d~~e~l~-~yp~sFDlVha  249 (334)
                      ....+||-.||  |.|..++.++. .|.   +|+.++.+++.++.+ .+.|....+  .  ++.+.+. ..++.||+|+.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  224 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGC---RVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFD  224 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEE
Confidence            34579999998  55666666665 454   678888887788877 555542111  1  1111110 01356998875


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.         . ...+.+..+.|||||.+++.
T Consensus       225 ~~---------g-~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          225 NV---------G-GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             SS---------C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             CC---------C-cchHHHHHHHHhhCCEEEEE
Confidence            41         1 24788889999999999874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=83.11  E-value=2.6  Score=40.42  Aligned_cols=93  Identities=14%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH-----HcCccchhhhhcccCCCCCCccceEEechhhccc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY-----ERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~-----~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      .+||.+|.++|.++..|...+++.  +  .| | -+-..+.     ..|+......+...+...+..||+|+..  +  -
T Consensus        40 ~~~~~~~d~~gal~~~~~~~~~~~--~--~d-s-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--l--p  109 (375)
T 4dcm_A           40 GPVLILNDAFGALSCALAEHKPYS--I--GD-S-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK--V--P  109 (375)
T ss_dssp             SCEEEECCSSSHHHHHTGGGCCEE--E--ES-C-HHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEEE--C--C
T ss_pred             CCEEEECCCCCHHHHhhccCCceE--E--Eh-H-HHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEEE--c--C
Confidence            579999999999999998765432  2  23 2 1211221     2243221111122333456899998664  1  1


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++...+...|.++...|+||+.+++...
T Consensus       110 k~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          110 KTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence            2333467888999999999999887654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=83.02  E-value=0.23  Score=41.44  Aligned_cols=25  Identities=36%  Similarity=0.715  Sum_probs=19.9

Q ss_pred             CCceeeEeecccccCCceEEEecCC
Q 019879           10 ADGRYMIEVDRVLRPGGYWVLSGPP   34 (334)
Q Consensus        10 ~~g~~l~E~dR~LrpgGy~v~s~pp   34 (334)
                      +--.+|-|+-|+|||||+|+++.|.
T Consensus        79 ~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           79 HSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEccc
Confidence            3345677889999999999997653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=82.44  E-value=1.8  Score=40.36  Aligned_cols=90  Identities=19%  Similarity=0.159  Sum_probs=56.8

Q ss_pred             CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCC-CCC-CccceEEec
Q 019879          180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFS-TYP-RTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~-~yp-~sFDlVha~  250 (334)
                      ...+||-.|+  |.|.+++.++. .|.   +|+.++.+++.++.+.+.|....  +.  ++.+.+. ..+ +.+|+|+.+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~---~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~  242 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGA---RVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDH  242 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence            4579999998  56777777665 453   57888888788887776563211  11  1111110 012 479998765


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      .-          ...+.+..+.|+|||.+++.
T Consensus       243 ~g----------~~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          243 TG----------ALYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             SC----------SSSHHHHHHHEEEEEEEEES
T ss_pred             CC----------HHHHHHHHHhhccCCEEEEE
Confidence            21          12567788999999998874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=82.38  E-value=2.3  Score=39.86  Aligned_cols=92  Identities=11%  Similarity=-0.047  Sum_probs=56.6

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccc-hh-------hhhcccCC--CCCCccceE
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIG-IY-------HDWCEAFS--TYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~-~~-------~d~~e~l~--~yp~sFDlV  247 (334)
                      ...+||=.|+|. |.++..|++ .|+.  .|+.++.+++.++.+.+.+-.. .+       .++.+.+.  +-.+.||+|
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~--~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv  256 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGAC--PLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVA  256 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC--SEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEE
Confidence            347888899865 556666665 3542  2677888888888777652110 11       11222111  113678998


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +-.     .    .-...+.+..+.|||||.+++.
T Consensus       257 id~-----~----g~~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          257 LEC-----T----GVESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             EEC-----S----CCHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEC-----C----CChHHHHHHHHHhcCCCEEEEE
Confidence            653     1    1135788899999999999885

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=81.90  E-value=3.6  Score=38.01  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=56.7

Q ss_pred             CCCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCC--CCCCccceEEe
Q 019879          179 GRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFS--TYPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~--~yp~sFDlVha  249 (334)
                      ....+||=.|+  |.|.+++.++. .|+   +|+.++.+++.++.+.+.|....+  .  ++.+.+.  +-.+.||+|+-
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid  223 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGA---HTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFD  223 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence            34578999995  44556666655 454   578888888888888776642111  1  1111110  11356999875


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.-          ...+....+.|||||.+++.
T Consensus       224 ~~g----------~~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          224 SVG----------KDTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CCG----------GGGHHHHHHHEEEEEEEEEC
T ss_pred             CCC----------hHHHHHHHHHhccCCEEEEE
Confidence            411          13567788999999998884

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=81.82  E-value=3.4  Score=37.85  Aligned_cols=86  Identities=15%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             eEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--hhhhcccCCCC-CCccceEEechhhccc
Q 019879          183 NIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--YHDWCEAFSTY-PRTYDLIHAHGLFSLY  256 (334)
Q Consensus       183 ~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d~~e~l~~y-p~sFDlVha~~vfs~~  256 (334)
                      +||=.||  |.|.++..|++ .|+   .|+.++.+++.++.+.+.|....  +.+... .... .+.+|+|+-.     .
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~-~~~~~~~~~d~v~d~-----~  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY---QVAAVSGRESTHGYLKSLGANRILSRDEFAE-SRPLEKQLWAGAIDT-----V  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTCSEEEEGGGSSC-CCSSCCCCEEEEEES-----S
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhcCCCEEEecCCHHH-HHhhcCCCccEEEEC-----C
Confidence            3998887  56677777766 454   57888888888888888774221  222111 1112 2578887543     1


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                          . ...+.+..+.|+|||.+++.
T Consensus       220 ----g-~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          220 ----G-DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             ----C-HHHHHHHHHTEEEEEEEEEC
T ss_pred             ----C-cHHHHHHHHHHhcCCEEEEE
Confidence                1 23788999999999999875

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=81.72  E-value=3.3  Score=39.37  Aligned_cols=100  Identities=8%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH----HHHcC--------------------------ccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV----IYERG--------------------------LIG  228 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rg--------------------------li~  228 (334)
                      .....|+.+|||..+.+-.|..... .+.+..+|.+ ++++.    +.+.+                          +++
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~P-~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYN-ESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECH-HHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCCH-HHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            3468999999999999999987421 2468999984 66552    11111                          010


Q ss_pred             -hh--hhhc----ccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          229 -IY--HDWC----EAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       229 -~~--~d~~----e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       .+  .+|-    +... -++...++++-.|+.++. ......++..+.+.+ |||.+++.|
T Consensus       174 ~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCT-KREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             CCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             cCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEEEEe
Confidence             00  1332    1222 226778999999998775 445667777777766 888887665

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=81.25  E-value=2.6  Score=38.98  Aligned_cols=92  Identities=12%  Similarity=-0.011  Sum_probs=56.1

Q ss_pred             CCceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCC--CCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFS--TYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~--~yp~sFDlVha~~  251 (334)
                      ...+||=+|+|.++ +++.++. .+  ...|+.+|.+++-++.+.+.|....+.    ++.+.+.  +-..-+|.++-..
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~--g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~  240 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVF--GAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA  240 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTS--CCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhC--CCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence            35789999998765 4444443 32  246899999988888888877532211    1111110  1223455554321


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                               .-...+....+.|||||.+++.
T Consensus       241 ---------~~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          241 ---------VARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             ---------SCHHHHHHHHHTEEEEEEEEEC
T ss_pred             ---------cCcchhheeheeecCCceEEEE
Confidence                     1246788888999999998875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=81.25  E-value=1.8  Score=40.42  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             CCceEeeeccc--ccHHHHHHHh-C-CCcEEEEEeccCChhhHHHHHHcCccch--hh--hhcccCC-CCC-CccceEEe
Q 019879          180 RYRNIMDMNAG--FGGFAAAIQS-S-KLWVMNVVPTLADKNTLGVIYERGLIGI--YH--DWCEAFS-TYP-RTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG--~G~faa~L~~-~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~--d~~e~l~-~yp-~sFDlVha  249 (334)
                      ...+||-.|+|  .|.+++.++. . |.   +|+.+|.+++.++.+.+.|....  +.  ++.+.+. ... +.+|+|+.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga---~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  246 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA---TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID  246 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCC---EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCC---eEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEE
Confidence            45789999998  5555555554 3 53   57888888788887776663211  11  1100000 012 47898875


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.         .-...+.+..+.|||||.+++.
T Consensus       247 ~~---------g~~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          247 LN---------NSEKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             SC---------CCHHHHTTGGGGEEEEEEEEEC
T ss_pred             CC---------CCHHHHHHHHHHHhcCCEEEEE
Confidence            41         1134778889999999998874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=80.44  E-value=3.3  Score=37.72  Aligned_cols=85  Identities=16%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             CCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccch--h---hhhcccCCCCCCccceEEech
Q 019879          180 RYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGI--Y---HDWCEAFSTYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~---~d~~e~l~~yp~sFDlVha~~  251 (334)
                      ...+||-.|+  |.|.+++.++. .|.   +|+.++.+++.++.+.+.|....  +   .++.+.+    +.||+|+- .
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga---~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~----~~~d~vid-~  196 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW----GGLDLVLE-V  196 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT----TSEEEEEE-C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh----cCceEEEE-C
Confidence            3579999998  45666666665 453   57888887778887777664211  1   1222222    56888864 1


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                           ..     ..+.+..+.|||||.+++.
T Consensus       197 -----g~-----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          197 -----RG-----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -----SC-----TTHHHHHTTEEEEEEEEEC
T ss_pred             -----CH-----HHHHHHHHhhccCCEEEEE
Confidence                 11     2567888999999998864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=80.28  E-value=3.2  Score=39.04  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=57.0

Q ss_pred             CCceEeeec--ccccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccCC-CCCCccceEEech
Q 019879          180 RYRNIMDMN--AGFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAFS-TYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~G--CG~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l~-~yp~sFDlVha~~  251 (334)
                      ...+||=.|  .|.|.+++.++. .|.   +|+.++.+++.++.+.+.|....+  .  ++.+.+. ..++.+|+|+-..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga---~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKC---HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV  239 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence            457899999  356667766665 454   578888887788888776642111  1  1111110 0135689886541


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                           .     ...+.+..+.|||||.+++.
T Consensus       240 -----g-----~~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          240 -----G-----GAMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             -----C-----THHHHHHHHHEEEEEEEEEC
T ss_pred             -----C-----HHHHHHHHHHHhcCCEEEEE
Confidence                 1     14778889999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	3e-04

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 1/128 (0%)

Query: 155 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLAD 214
           Y+    + K  ++  ++I +       R ++D+  G G     +      V+ +      
Sbjct: 16  YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75

Query: 215 KNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRIL 273
                   +   + I     +         +D +       +Y D+ ++  +  ++   L
Sbjct: 76  LRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL 135

Query: 274 RPEGAIII 281
           +P G  I 
Sbjct: 136 KPGGVFIT 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.74
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.73
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.68
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.68
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.67
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.67
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.65
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.64
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.61
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.6
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.59
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.58
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.56
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.52
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.48
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.47
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.47
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.46
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.43
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.42
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.36
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.33
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.33
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.32
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.3
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.27
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.24
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.24
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.23
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.23
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.09
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.09
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.06
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.06
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.0
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.95
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.91
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.91
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.87
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.84
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.73
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.72
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.62
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.61
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.59
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.57
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.54
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.51
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.5
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.44
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.34
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.32
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.3
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.22
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.16
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.14
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.14
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.08
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.07
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.06
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.95
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.92
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.91
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.91
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.86
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.71
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.67
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.52
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.49
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.37
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.37
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.36
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.22
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.19
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.93
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.88
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.77
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.61
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.45
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.23
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.04
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.71
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.02
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.93
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	94.79
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.78
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	94.73
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	94.57
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.57
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	94.18
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.11
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.99
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.4
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.79
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.76
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.56
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.22
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.2
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.12
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	90.04
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.01
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.89
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.82
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.8
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.07
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.45
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	84.38
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.11
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	82.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.61
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	81.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	80.55
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	80.29

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=3.3e-18  Score=150.87  Aligned_cols=97  Identities=23%  Similarity=0.419  Sum_probs=81.6

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEec-hhhccccC
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH-GLFSLYKD  258 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~-~vfs~~~~  258 (334)
                      ..+|||+|||+|.++..|++.+.   .|+++|.|+.|++.|.+++........++++ +|+ ++||+|+|. .+++|+. 
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l-~~~~~~fD~ii~~~~~~~~~~-  117 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDL-PFPSGAFEAVLALGDVLSYVE-  117 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSC-CSCTTCEEEEEECSSHHHHCS-
T ss_pred             CCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccccccc-ccccccccceeeecchhhhhh-
Confidence            46899999999999999999874   6999999999999999998644433444565 466 999999985 6888875 


Q ss_pred             cCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                        +...+|+|+.|+|||||.++++..
T Consensus       118 --d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         118 --NKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --hHHHHHHHHHhhcCcCcEEEEEEC
Confidence              478899999999999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=4.3e-18  Score=151.64  Aligned_cols=101  Identities=19%  Similarity=0.366  Sum_probs=81.9

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEe
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      .-....+|||+|||+|.++..|++++   .+|+++|+|++|++.|.++    |+  +......++.+ +|+ ++||+|+|
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~   88 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDIITC   88 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEEEE
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccceeee
Confidence            33345899999999999999999876   3799999999999987655    32  22333344555 466 99999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ..+|+|+.   +++.+|+|+.|+|||||.+++.+.
T Consensus        89 ~~~l~~~~---d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          89 RYAAHHFS---DVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eceeeccc---CHHHHHHHHHHeeCCCcEEEEEEc
Confidence            99999975   489999999999999999999763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.73  E-value=3.7e-18  Score=150.29  Aligned_cols=98  Identities=17%  Similarity=0.253  Sum_probs=80.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCCCCC-CccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ...+|||+|||+|.++..|++.+.   +|+++|+|++|++.|.++    |.  +...+..++.+ +|+ ++||+|+|..+
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHIVTCRIA   90 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEEEEEESC
T ss_pred             CcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccc-ccccccccccccccc
Confidence            347999999999999999998864   689999999999987654    33  23344445555 466 99999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|+.   +++.+|.|++|+|||||+++|.+.
T Consensus        91 l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          91 AHHFP---NPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             GGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccC---CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99985   478999999999999999999763

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=1.2e-17  Score=145.27  Aligned_cols=99  Identities=16%  Similarity=0.334  Sum_probs=79.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      .+|||+|||+|.++..|++.+.   +|+++|+|++|++.|+++    +. +.......+.+ +++ ++||+|+|..+|+|
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEESCGGG
T ss_pred             CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccc-cccCcCceEEEEecchhh
Confidence            6899999999999999999874   699999999999988765    22 11222223444 455 99999999999999


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +.+ .++..+|+|+.|+|||||.+++.+..
T Consensus       115 ~~~-~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         115 FEP-LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            853 46889999999999999999998653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=4.3e-17  Score=145.08  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=84.1

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCc
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRT  243 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~s  243 (334)
                      +..++......+.++|||+|||+|.++..|++++.   +|+++|.|++|+..|.++    ++ +.......+.+ +++++
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~~~~~  105 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNE  105 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSC
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhc-ccccc
Confidence            33344444555568999999999999999999874   799999999999988776    32 22233334455 46689


Q ss_pred             cceEEec-hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YDLIHAH-GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FDlVha~-~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||+|+|. ++|+|+. ..+...+|.+++|+|||||.+++..
T Consensus       106 fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         106 FDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999986 6777763 3467899999999999999999864

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=3.2e-17  Score=142.72  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCC
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN  261 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~  261 (334)
                      .+|||+|||+|.++..|.+       ++++|.|+.|++.+.+|++ ......+++++..+++||+|+|+++|+|+.   +
T Consensus        38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d  106 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---D  106 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---C
T ss_pred             CeEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---c
Confidence            4799999999999988853       4799999999999999874 334445566644449999999999999985   4


Q ss_pred             HHHHHHHHHHhhcCCeEEEEEeC
Q 019879          262 IEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +..+|.|++|+|||||.+++.+.
T Consensus       107 ~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_         107 PERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhhhhcCCCCceEEEEec
Confidence            78999999999999999999864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=4.8e-17  Score=144.17  Aligned_cols=103  Identities=8%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             CceEeeecccccHHHHHHHhCC-CcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSK-LWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~-v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++..|++.- .-..+|+++|.|++|++.|.++    +....++..+.++..++ ..||+|+|+.+++
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~  119 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  119 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence            4689999999999998887631 1125899999999999999875    33334444445566777 8999999999999


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+. ..+...+|+||+|+|||||.|++.|.
T Consensus       120 ~~~-~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         120 FLP-PEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             GSC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence            874 45788999999999999999999874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.67  E-value=6.9e-17  Score=147.98  Aligned_cols=99  Identities=21%  Similarity=0.268  Sum_probs=80.1

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-CccceEEe
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~sFDlVha  249 (334)
                      .+..+|||+|||+|.++..|+++ +   .+|+++|+|+.|++.+.++    |+.   ......++.+ +++ ++||+|+|
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~V~~  141 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWS  141 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCC---cEEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccchhhc
Confidence            34589999999999999999876 4   3689999999999887765    432   2333334455 466 99999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ..+|+|++   ++..+|.|+.|+|||||.|++.+.
T Consensus       142 ~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         142 QDAFLHSP---DKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             ESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhhcc---CHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99999985   478999999999999999999863

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=140.28  Aligned_cols=123  Identities=18%  Similarity=0.218  Sum_probs=93.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc------cchhhhhcccCCCCCCccceEEechh
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL------IGIYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl------i~~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ....+|||+|||+|.++..|+++..  ..|+++|+|++|++.|+++.-      +..+....+.+++.+++||+|+|..+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            4457899999999999999877654  369999999999999887632      11223334455433499999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh---------------hhHHHHHHHHhcccceEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV---------------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~~~~~l~W~~~~  304 (334)
                      ++|+.+ .++..+|.++.|+|||||.+++.+..               ...+.++++++.-.+++..
T Consensus       137 l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         137 IGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            999864 34678999999999999999998631               1356677777777776543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.2e-16  Score=141.56  Aligned_cols=99  Identities=13%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             CCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEEec
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAH  250 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~  250 (334)
                      ....+|||+|||+|.++..|+++ +   ..|+++|.|+.|++.+.++    |+.   ...+...+.+ +.+++||+|+|.
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~~~---~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~  107 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACV  107 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhcC---CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEE
Confidence            34579999999999999999875 4   3589999999999987765    542   2232222333 334999999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+++|+.   ++..+|.|++|+|||||.+++.+.
T Consensus       108 ~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_         108 GATWIAG---GFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             SCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             ehhhccC---CHHHHHHHHHHHcCcCcEEEEEec
Confidence            9999976   468999999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=2.6e-16  Score=143.60  Aligned_cols=133  Identities=16%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             HHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhhhhcccCCCCCCccc
Q 019879          170 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYHDWCEAFSTYPRTYD  245 (334)
Q Consensus       170 ~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~d~~e~l~~yp~sFD  245 (334)
                      ..++..+......+|||+|||+|.++..|+.+..  .+|+++|.|+.|++.|+++-    .+..+....+.+++-+++||
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence            3445555556678999999999999999887543  36899999999999998762    12233333345543349999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------------hhHHHHHHHHhcccceEEEe
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------------DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~~~~~l~W~~~~~  305 (334)
                      +|+|..+|+|+.+ .++..+|.++.|+|||||+|+|.+..                ...+.++++++.-.+++...
T Consensus       161 ~I~~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~  235 (254)
T d1xtpa_         161 LIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             eEEeeccccccch-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence            9999999999864 35678999999999999999998642                12356677776666665433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.63  E-value=1.1e-16  Score=135.60  Aligned_cols=103  Identities=7%  Similarity=-0.026  Sum_probs=79.0

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc----c--------------chhhhhcccCC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL----I--------------GIYHDWCEAFS  238 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl----i--------------~~~~d~~e~l~  238 (334)
                      ...+..+|||+|||+|..+..|+++|.   +|+++|+|++|++.+.++.-    .              ..+......++
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence            334568999999999999999999884   68999999999999988621    0              01111112223


Q ss_pred             CCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          239 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       239 ~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +++ .+||+|+++.+++|+.. .+...++.+|.|+|||||.+++..
T Consensus        94 ~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          94 ARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEE
Confidence            344 78999999999998753 456789999999999999988764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.63  E-value=3e-16  Score=139.34  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhcccCCCCCCccceEEechhhcccc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEAFSTYPRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~l~~yp~sFDlVha~~vfs~~~  257 (334)
                      +..+|||+|||+|.++..|++.+.   +|+++|.|++|++.+.++..  +...+...+++ +++++||+|+|..||+|+.
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccc-ccccccccccccceeEecC
Confidence            356899999999999999998763   68999999999999987742  22233333443 3469999999999999985


Q ss_pred             CcCCHHHHHHHHH-HhhcCCeEEEEEe
Q 019879          258 DKCNIEDILLEMD-RILRPEGAIIIRD  283 (334)
Q Consensus       258 ~~c~~~~~L~Em~-RVLRPGG~lii~D  283 (334)
                         ++..+|.|+. |+|||||.+++..
T Consensus        96 ---d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          96 ---DPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             ---SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---CHHHHHHHHHHHhcCCCceEEEEe
Confidence               5789999997 8999999999975

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=5e-16  Score=138.82  Aligned_cols=100  Identities=15%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEec-hhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAH-GLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~-~vf  253 (334)
                      ..++|||+|||+|.++..|++++.   +|+|+|.|++||+.|.+|    |+ +.........+ ..+++||+|+|. ++|
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTTGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhh-cccccccccceeeeee
Confidence            357899999999999999999874   689999999999998776    32 22222222233 245899999985 688


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|+.+..++..+|++++|.|||||.|++.-
T Consensus       113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            888776778899999999999999999853

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=5.5e-16  Score=134.86  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCC--CCCCccceEEechhh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFS--TYPRTYDLIHAHGLF  253 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~--~yp~sFDlVha~~vf  253 (334)
                      ...+|||+|||+|.++..|++++.   .|+++|+|+.|++.+.++    |+. .+...+.++.  +++++||+|+|+.+|
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~~~~~~  105 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFILSTVVM  105 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEEEeeee
Confidence            345899999999999999999874   689999999999976543    332 1111122222  356999999999999


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +|++ ..+...+|.++.|+|||||.+++..
T Consensus       106 ~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         106 MFLE-AQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GGSC-TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ecCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9985 3567899999999999999999974

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.6e-16  Score=140.47  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      ..+..+|||+|||+|.++..|++...- ..++++|+|+.|+..+.++.. +......++.+ +|+ ++||+|++.++++|
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-PFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-SBCTTCEEEEEEESCCCC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccccccceeeehhhc-cCCCCCEEEEeecCCHHH
Confidence            445689999999999999999986321 468999999999999988753 22233334555 455 99999999866654


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                                +.|+.|||||||.|++..+.
T Consensus       160 ----------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         160 ----------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             ----------HHHHHHHEEEEEEEEEEEEC
T ss_pred             ----------HHHHHHHhCCCcEEEEEeeC
Confidence                      46999999999999998754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=9.5e-16  Score=141.26  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCCCccceEEechh
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYPRTYDLIHAHGL  252 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp~sFDlVha~~v  252 (334)
                      ..+..+|||+|||+|.++..|++.--....|+++|+|+.|++.|.++    ++ +.......+.+ +++++||+|+|+++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHAF  103 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEESC
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEehh
Confidence            34568999999999999999987411124689999999999988765    22 11222223333 45688999999999


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|+.   ++..+|.++.|+|||||.+++.++
T Consensus       104 l~~~~---d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         104 LLHMT---TPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GGGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence            99976   478999999999999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=2.3e-15  Score=139.69  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             HHHHHHHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC
Q 019879          167 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP  241 (334)
Q Consensus       167 ~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp  241 (334)
                      +.+..++..+.-.+..+|||+|||+|+++..++++ +   .+|+++|+|+++++.+.+|    |+.........+...++
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g---~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA  115 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc---eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc
Confidence            33444555555556789999999999999998875 5   3799999999999877665    55333222223333456


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++||.|++..+|+|+.+ .+...+|++++|+|||||.+++.+
T Consensus       116 ~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         116 EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence            99999999999999863 467899999999999999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.59  E-value=4.9e-16  Score=140.20  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-------cchhhhhcccCCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-------IGIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-------i~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      +..+|||+|||+|+.+..+++.+.  .+|+|+|+|++|++.|.+|..       +......+...+... ++||+|+|..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            347999999999999999988664  369999999999999987621       111121122222223 7999999999


Q ss_pred             hhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          252 LFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       252 vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +++|+.. ..++..+|.++.|+|||||+|+++...
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            9998743 345779999999999999999987653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=132.78  Aligned_cols=122  Identities=10%  Similarity=0.037  Sum_probs=88.3

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----c-cc------hhh-----------------
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----L-IG------IYH-----------------  231 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----l-i~------~~~-----------------  231 (334)
                      +..+|||+|||+|.++..++..+.  .+|+++|+|+.|++.+.++-    . ..      .+.                 
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            457899999999999887776653  47999999999999887641    0 00      000                 


Q ss_pred             ---------hhcc--cCCCCC-CccceEEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeChh------------
Q 019879          232 ---------DWCE--AFSTYP-RTYDLIHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEVD------------  286 (334)
Q Consensus       232 ---------d~~e--~l~~yp-~sFDlVha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~~------------  286 (334)
                               +...  ...+++ ++||+|++..+++|+.. ..++..++.++.|+|||||.+++.+...            
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~  208 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  208 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence                     0000  123456 89999999999999742 3367789999999999999999986311            


Q ss_pred             ----hHHHHHHHHhcccceEE
Q 019879          287 ----EIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       287 ----~~~~i~~~~~~l~W~~~  303 (334)
                          ..+.+++.+..-.+.+.
T Consensus       209 ~~~~~~~~~~~~l~~aGf~v~  229 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAGFDIE  229 (257)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEE
T ss_pred             ccCCCHHHHHHHHHHCCCEEE
Confidence                24667777777777653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-15  Score=139.94  Aligned_cols=106  Identities=15%  Similarity=0.247  Sum_probs=77.8

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccchhh-------hhc--ccCCCCCC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIGIYH-------DWC--EAFSTYPR  242 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~~~~-------d~~--e~l~~yp~  242 (334)
                      ++....++|||+|||+|.++..|++++.   +|+++|.|++||..|.++.    ......       ++.  +.-.++.+
T Consensus        52 l~~~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD  128 (292)
T ss_dssp             HHHTTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred             hhhcCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence            4444457999999999999999999873   6999999999999887652    211110       110  00123458


Q ss_pred             ccceEEec-hhhccccCc----CCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          243 TYDLIHAH-GLFSLYKDK----CNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       243 sFDlVha~-~vfs~~~~~----c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +||+|+|. .+|+|+.+.    .+...+|+|+.|+|||||.|+|...
T Consensus       129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            99999975 588887542    2467899999999999999999653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=8.3e-15  Score=136.95  Aligned_cols=111  Identities=13%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             HHHHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCcc
Q 019879          170 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTY  244 (334)
Q Consensus       170 ~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sF  244 (334)
                      ..++..++-....+|||+|||.|+++.+++++ +   .+|+++++|+++++.+.++    |+.........+.++.+++|
T Consensus        51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g---~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC---cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            33445555556789999999999999999864 5   4789999999988766554    65443332233444445999


Q ss_pred             ceEEechhhccccCc------CCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDK------CNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~------c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |.|+|-.+|.|+.+.      .....+|++++|+|||||.+++.+
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            999999999998642      246899999999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=129.12  Aligned_cols=121  Identities=8%  Similarity=0.002  Sum_probs=88.2

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-c-------------------hhhhhcc---
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-G-------------------IYHDWCE---  235 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-~-------------------~~~d~~e---  235 (334)
                      ....+|||+|||+|..+..|+++|.   +|+++|+|+.+++.++++.-. .                   .....+.   
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            3457999999999999999999984   689999999999988765210 0                   0000111   


Q ss_pred             cCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHHHHHHhcccceE
Q 019879          236 AFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       236 ~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~~~~~l~W~~  302 (334)
                      .+++.+ ++||+|+...+|+|+. ..+.+.++.+|.|+|||||.+++....            -..+.++.++.. .|++
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i  198 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI  198 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred             hccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence            123444 8999999999999975 456789999999999999988776421            023557777755 4666


Q ss_pred             EE
Q 019879          303 KM  304 (334)
Q Consensus       303 ~~  304 (334)
                      ..
T Consensus       199 ~~  200 (229)
T d2bzga1         199 RC  200 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=7.3e-14  Score=121.50  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=90.6

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccch-hh-hhcccCCCCC-CccceE
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI-YH-DWCEAFSTYP-RTYDLI  247 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~-~~-d~~e~l~~yp-~sFDlV  247 (334)
                      .+...+..+|||+|||+|.++..|++..   -+|+++|+++.++..+.++    ++... +. ..+..+..++ ++||+|
T Consensus        47 ~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~I  123 (194)
T d1dusa_          47 NVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKI  123 (194)
T ss_dssp             HCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEE
T ss_pred             hCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEE
Confidence            4555567899999999999999998865   3789999999999988754    32110 10 0111122344 899999


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh-hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD-EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      +|+..+++..  ...+.++.++.|+|+|||.+++..... ..+.+...++..-+++......    .+=++|-++|
T Consensus       124 i~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K  193 (194)
T d1dusa_         124 ITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK  193 (194)
T ss_dssp             EECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred             EEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence            9998887542  235689999999999999987754332 2233444444444444432222    1335677766

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.47  E-value=1e-13  Score=129.07  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=82.2

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCccce
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~sFDl  246 (334)
                      +...++-....+|||+|||.|+++.++++. |   ..|+++++|+.+++.|.+|    |+.....-.+.++..+|.+||.
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g---~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~  130 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDR  130 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred             HHHHcCCCCCCEEEEecCcchHHHHHHHhcCC---cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccc
Confidence            444455556689999999999999998774 5   4799999999988876554    4433322222333345689999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |++-.+|.|+.+ .....+|++++|+|||||.+++.+
T Consensus       131 i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         131 IVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence            999999999753 356899999999999999999855

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.9e-14  Score=127.63  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             ceEeeecccccHHHHHHHhC-----CCcEEEEEeccCChhhHHHHHHcC-----ccchhhhhc---------ccCCCCC-
Q 019879          182 RNIMDMNAGFGGFAAAIQSS-----KLWVMNVVPTLADKNTLGVIYERG-----LIGIYHDWC---------EAFSTYP-  241 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~-----~v~v~nVv~vD~s~~~L~~a~~Rg-----li~~~~d~~---------e~l~~yp-  241 (334)
                      -+|||+|||+|.++..|+..     +.....++++|.|+.|++.+.++-     +.....++.         ....+++ 
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            47999999999987776542     223467899999999999887761     110000000         0123455 


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++||+|+|.++|+|..   ++..+|++++|+|||||.+++..
T Consensus       122 ~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEEE
Confidence            9999999999999975   57899999999999999998874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.9e-14  Score=127.33  Aligned_cols=99  Identities=13%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cc-hhhhhcccCCCCC-CccceEEe---
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IG-IYHDWCEAFSTYP-RTYDLIHA---  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~-~~~d~~e~l~~yp-~sFDlVha---  249 (334)
                      ...+|||+|||+|.++.++++++  +.+|+++|+|+.|++.+.++..     +. ...+.......++ ++||+|+.   
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            45799999999999999998865  3579999999999999887642     11 1112222223455 78888763   


Q ss_pred             --chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          250 --HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       250 --~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                        ...+.|+   .+.+.++.|+.|+|||||.|++.+
T Consensus       131 ~~~~~~~~~---~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTT---HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccccc---cCHHHHHHHHHHHcCCCcEEEEEe
Confidence              4444443   347889999999999999998854

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.46  E-value=5.3e-14  Score=127.18  Aligned_cols=107  Identities=25%  Similarity=0.309  Sum_probs=78.0

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCCCccceEEe
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYPRTYDLIHA  249 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp~sFDlVha  249 (334)
                      .+.....++|||+|||+|.++..|+++... ..++.+|.+ ++++.+.++    |+...+.....+ +.+.|.+||+|++
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~  152 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL  152 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence            445567799999999999999999886322 357888985 788766544    442221111122 3344578999999


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      +++|||+.+ .+...+|++++|+|||||.|+|.|.
T Consensus       153 ~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         153 SFVLLNWPD-HDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEec
Confidence            999999753 3456899999999999999999863

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=1.8e-13  Score=125.44  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-hhhhhcccCCCCC-CccceEEechhhc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAFSTYP-RTYDLIHAHGLFS  254 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~~~d~~e~l~~yp-~sFDlVha~~vfs  254 (334)
                      ..+|||+|||+|.++.+++..+.   .|+++|+++.|++.|+++    |+.. ..+...+  ..++ ++||+|+|+.+.+
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~--~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE--AALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH--HHGGGCCEEEEEEECCHH
T ss_pred             cCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEecccc--ccccccccchhhhccccc
Confidence            47999999999999999988774   589999999999988753    3311 1111111  1345 8999999985554


Q ss_pred             cccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceEEEe
Q 019879          255 LYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDTKMV  305 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~~~~  305 (334)
                      .      +..++.++.|+|||||+|++++.. +..+.+.+.+....|+....
T Consensus       196 ~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             c------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence            3      467899999999999999998753 34567777788888876543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=125.76  Aligned_cols=125  Identities=13%  Similarity=0.115  Sum_probs=86.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--Cccch-------------------------
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--GLIGI-------------------------  229 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--gli~~-------------------------  229 (334)
                      +..+..+|||+|||+|.+...++.+.+  .+|+++|.|+.|++.+.++  ...+.                         
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  128 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER  128 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence            334568999999999988766665543  4799999999999987653  10000                         


Q ss_pred             ----------hhhhccc--C--CCC-CCccceEEechhhcccc-CcCCHHHHHHHHHHhhcCCeEEEEEeCh--------
Q 019879          230 ----------YHDWCEA--F--STY-PRTYDLIHAHGLFSLYK-DKCNIEDILLEMDRILRPEGAIIIRDEV--------  285 (334)
Q Consensus       230 ----------~~d~~e~--l--~~y-p~sFDlVha~~vfs~~~-~~c~~~~~L~Em~RVLRPGG~lii~D~~--------  285 (334)
                                ..|..+.  +  ..+ +++||+|.|.++++|+. ++.++..+|+++.|+|||||.|++.+..        
T Consensus       129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~  208 (263)
T d2g72a1         129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG  208 (263)
T ss_dssp             HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence                      0011111  1  122 27899999999999874 4456889999999999999999997531        


Q ss_pred             --------hhHHHHHHHHhcccceEE
Q 019879          286 --------DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       286 --------~~~~~i~~~~~~l~W~~~  303 (334)
                              -..+.|++.+.....++.
T Consensus       209 ~~~~~~~~~t~e~v~~~l~~aGf~v~  234 (263)
T d2g72a1         209 EARLTVVPVSEEEVREALVRSGYKVR  234 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHCCCeEE
Confidence                    023667777776666554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=8.8e-13  Score=113.95  Aligned_cols=119  Identities=16%  Similarity=0.241  Sum_probs=85.4

Q ss_pred             hhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-Cccc
Q 019879          174 RLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RTYD  245 (334)
Q Consensus       174 ~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~sFD  245 (334)
                      ..+...+..+|||+|||+|.++..|+....   .|+++|.++++++.|.++    |+.   ...+..+..+ .++ .+||
T Consensus        27 ~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~-~~~~~~~D  102 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKIPDID  102 (186)
T ss_dssp             HHHCCCTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTSCCEE
T ss_pred             HhcCCCCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc-ccccCCcC
Confidence            345556678999999999999999987653   689999999999988764    442   2233222333 244 8999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccceE
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~~  302 (334)
                      +|++....+      .++.++.++.+.|||||.+++.... +....+.+.+....++.
T Consensus       103 ~v~~~~~~~------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         103 IAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             EEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEeCccc------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence            999975433      3578999999999999999998754 34445555555555543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.33  E-value=9.2e-13  Score=119.79  Aligned_cols=106  Identities=23%  Similarity=0.241  Sum_probs=77.3

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhcc-cCCCCCCccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCE-AFSTYPRTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e-~l~~yp~sFDlVha~  250 (334)
                      ++....++|||+|||+|.++..|+++.-. +.++.+|.+ ++++.+.++    |+......... .+.+.|..||+|++.
T Consensus        77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~  154 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVELA-GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS  154 (256)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred             CCCccCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence            34456789999999999999999986211 468899984 777765543    43221111111 233456789999999


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ++|||+.+ .+...+|++++|+|||||.|+|.|.
T Consensus       155 ~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         155 FVLLNWSD-EDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccccCc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence            99998753 3456889999999999999999875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.33  E-value=4.3e-12  Score=112.60  Aligned_cols=99  Identities=14%  Similarity=0.041  Sum_probs=67.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCCCc---cceEEech
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYPRT---YDLIHAHG  251 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp~s---FDlVha~~  251 (334)
                      .+..+|||+|||+|.++.+|++.-.. ..|+++|+|+.|++.+.++    +.+......++....++..   +|+|++. 
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~-  132 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  132 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec-
Confidence            34589999999999999999874211 2599999999999866543    4333332222222234444   4444332 


Q ss_pred             hhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          252 LFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       +.|   ..+...++.|++|+|||||.+++.+
T Consensus       133 -~~~---~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         133 -IAQ---KNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             -CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccC---hhhHHHHHHHHHHHhccCCeEEEEE
Confidence             333   3457889999999999999999976

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=3.3e-12  Score=115.14  Aligned_cols=122  Identities=11%  Similarity=-0.036  Sum_probs=83.4

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----CccchhhhhcccCCCCC-CccceEEechh
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      -.+..+|||+|||+|.++.+|++..-. ..|+++|+|+.|++.+.++    +.+......+.....|. .+||++++.+.
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence            345689999999999999999985322 3699999999999977665    22222222222223344 77888777666


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh----------hhHHHHHHHHhcccceEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV----------DEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~----------~~~~~i~~~~~~l~W~~~  303 (334)
                      ++|.   .+.+.++.++.|+|||||.+++.+..          ...+.+.+.++.-..+..
T Consensus       151 ~~~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv  208 (230)
T d1g8sa_         151 VAQP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV  208 (230)
T ss_dssp             CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred             ccch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            6653   45788999999999999999998531          233445555555556543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=3e-12  Score=113.53  Aligned_cols=115  Identities=10%  Similarity=0.069  Sum_probs=78.5

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH----cCcc--chhhhhcccCC-CCC-CccceEEechhh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE----RGLI--GIYHDWCEAFS-TYP-RTYDLIHAHGLF  253 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~----Rgli--~~~~d~~e~l~-~yp-~sFDlVha~~vf  253 (334)
                      ..|||+|||+|.++..|++.... .+++|+|.++.++..+.+    .|+.  ..++..+..+. .++ ++||.|+..+..
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            47999999999999999885322 489999999998876544    3542  22222222222 255 999999887665


Q ss_pred             ccccC-----cCCHHHHHHHHHHhhcCCeEEEEE-eChhhHHHHHHHHhc
Q 019879          254 SLYKD-----KCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGG  297 (334)
Q Consensus       254 s~~~~-----~c~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~~~~~  297 (334)
                      .+...     +---..+|.+++|+|||||.|+|. |...+.+.+...+..
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~  159 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  159 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHH
Confidence            54321     111257999999999999999885 555566666655543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=8.1e-12  Score=112.51  Aligned_cols=139  Identities=12%  Similarity=0.102  Sum_probs=86.5

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccch-hhhhc--ccCCCCCCccceEEe
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGI-YHDWC--EAFSTYPRTYDLIHA  249 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~-~~d~~--e~l~~yp~sFDlVha  249 (334)
                      .-....+|||+|||+|.++.+|++.-.....|+++|+++.|++.+.++    +.+.. ..+-.  +.++.....+|+|++
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence            334568999999999999999988410113699999999999876554    32221 11111  122223378999887


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC----------hhhHHHHHHHHhcccceEE-EecCCCCCC-CCceE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE----------VDEIIKVKKIVGGMRWDTK-MVDHEDGPL-VPEKI  317 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~i~~~~~~l~W~~~-~~~~~~~~~-~~e~~  317 (334)
                      .  ++|   ..+...++.++.|+|||||.+++...          ..+...++++... .++.. ..+.  .|. ...-+
T Consensus       150 d--~~~---~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L--~p~~~~H~~  221 (227)
T d1g8aa_         150 D--VAQ---PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNL--EPYEKDHAL  221 (227)
T ss_dssp             C--CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEEC--TTTSSSEEE
T ss_pred             E--ccc---cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcC--CCCCCceEE
Confidence            5  333   23467899999999999999999742          1233445554433 45443 2222  222 23456


Q ss_pred             EEEEec
Q 019879          318 LVAVKQ  323 (334)
Q Consensus       318 l~~~K~  323 (334)
                      +|+||+
T Consensus       222 vv~rK~  227 (227)
T d1g8aa_         222 FVVRKT  227 (227)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            778875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.4e-12  Score=116.09  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             HHHHHHHHh-hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHH---HHHcCcc---chhhhhcccCC
Q 019879          166 VNAYKKINR-LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGV---IYERGLI---GIYHDWCEAFS  238 (334)
Q Consensus       166 v~~y~~ll~-~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~---a~~Rgli---~~~~d~~e~l~  238 (334)
                      .+.|.+.+. .+...+..+|||+|||+|.++..+++.|+.  .|+++|.|+.++..   +.+.++.   ...+...+.+ 
T Consensus        20 ~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-   96 (311)
T d2fyta1          20 TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-   96 (311)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-
T ss_pred             HHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-
Confidence            455655332 223334578999999999999999988753  68999999776542   2333432   2233333444 


Q ss_pred             CCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          239 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       239 ~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +++ .+||+|+|..+.+++.....++.++..++|.|||||.++-.
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            455 89999999877776654445778888899999999998753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=7.2e-12  Score=117.28  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHH----HcCccc---hhhhhcccCCCCC-CccceEEechh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIY----ERGLIG---IYHDWCEAFSTYP-RTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~----~Rgli~---~~~d~~e~l~~yp-~sFDlVha~~v  252 (334)
                      ..+|||+|||+|.++..+++.|+.  .|+++|.+ +++..+.    +.++..   ..+...+.+ ++| .+||+|++..+
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWM  114 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCC
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEec
Confidence            479999999999999999888753  58999998 4655443    334422   233333344 455 89999999888


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      ++++.....++.++.+++|+|||||.++-
T Consensus       115 ~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence            87776666789999999999999999863

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.24  E-value=1.3e-11  Score=109.34  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhhhhcccCC-CCC-CccceEEechhh
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYHDWCEAFS-TYP-RTYDLIHAHGLF  253 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~d~~e~l~-~yp-~sFDlVha~~vf  253 (334)
                      ..|||+|||+|.++..|++.... .+++|+|.++.++..+.++    ++  +..++..++.+. .++ .++|.|++.+--
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            47999999999999999885322 4899999999888866543    44  222333233332 356 999999886432


Q ss_pred             c-----cccCcCCHHHHHHHHHHhhcCCeEEEEE-eChhhHHHHHHHHhcccceE
Q 019879          254 S-----LYKDKCNIEDILLEMDRILRPEGAIIIR-DEVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       254 s-----~~~~~c~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~~~~~l~W~~  302 (334)
                      .     |...+---..+|.++.|+|||||.|+|. |..++.+.+........+..
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~  166 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL  166 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccc
Confidence            2     2221111268999999999999999885 55556666555555545543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=4.1e-12  Score=112.77  Aligned_cols=102  Identities=13%  Similarity=-0.025  Sum_probs=70.2

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCCCccce
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYPRTYDL  246 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp~sFDl  246 (334)
                      +..++-....+|||+|||+|.+++.|++.-.....|+++|.++.+++.+.++    ++.  ...+.......+..++||+
T Consensus        68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~  147 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV  147 (213)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence            3334444568999999999999998876311113689999999999988765    221  1112112222233389999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |++..++++++         .++.|.|||||.+++-.
T Consensus       148 I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         148 IFVTVGVDEVP---------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred             hhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence            99998887754         25778999999999854

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=9.5e-12  Score=115.99  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHH---HHHHcCccc---hhhhhcccCCCCC-CccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLG---VIYERGLIG---IYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~---~a~~Rgli~---~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      .++|||+|||+|.++..+++.|+.  .|+++|.|+.+..   .+...|+..   ..+...+.+ +++ ++||+|++..+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCB
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeeeeee
Confidence            478999999999999988888753  5899999854322   223335422   222223343 455 899999998777


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIII  281 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii  281 (334)
                      +++.+...++.++.+++|+|||||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            7666556789999999999999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=7.5e-11  Score=108.54  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=71.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc------CccchhhhhcccC--CCCC-Cccc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER------GLIGIYHDWCEAF--STYP-RTYD  245 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R------gli~~~~d~~e~l--~~yp-~sFD  245 (334)
                      ++-....+|||+|||+|.++.+|+.. +-. ..|+++|.++++++.|+++      +........+.++  ..++ ++||
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~-G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCC-cEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence            44445689999999999999999873 111 3699999999999988763      1111111111111  3566 9999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      .|+..     ++   ++..++.++.|+|||||.+++..+.
T Consensus       171 aV~ld-----lp---~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         171 RAVLD-----ML---APWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             EEEEE-----SS---CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             eEEEe-----cC---CHHHHHHHHHhccCCCCEEEEEeCc
Confidence            99763     33   3568999999999999999987754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.1e-10  Score=107.21  Aligned_cols=118  Identities=13%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-CCCCC-CccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-FSTYP-RTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-l~~yp-~sFDlVha  249 (334)
                      ++-....+|||+|||+|.++.+|+..-.-...|+++|.++++++.|.++    |+......-..+ ...++ ..||.|+.
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe
Confidence            3444568999999999999999986311113699999999999987654    332221110111 12345 78888754


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccce
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRWD  301 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W~  301 (334)
                           +++   ++..+|.++.|+|||||.|++.-+. +.++++-+.++...|.
T Consensus       179 -----d~p---~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         179 -----DVP---DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             -----CCS---CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             -----cCC---CHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence                 443   4678999999999999999987653 3444444444444553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.06  E-value=1.1e-10  Score=106.66  Aligned_cols=114  Identities=12%  Similarity=0.085  Sum_probs=76.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chh-hhhcccCCCCCCccce
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIY-HDWCEAFSTYPRTYDL  246 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~-~d~~e~l~~yp~sFDl  246 (334)
                      ++-....+|||+|||+|.++.+|++. +. ...|+++|.++++++.|.++    +..   ... .|.++.  ..+++||.
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~fD~  157 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDA  157 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccceeee
Confidence            33344589999999999999888863 11 13689999999999988764    221   122 222221  12389999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-hhHHHHHHHHhcccc
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-DEIIKVKKIVGGMRW  300 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~~~~~l~W  300 (334)
                      |+++     ++   ++..++.++.|+|||||.|++.-+. +.++++-..++...|
T Consensus       158 V~ld-----~p---~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         158 VIAD-----IP---DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             EEEC-----CS---CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred             eeec-----CC---chHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence            9874     22   3457899999999999999998664 334444444444444

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.1e-11  Score=105.66  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=65.0

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc-------chhhhhcccCCCCC-Cccce
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI-------GIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-------~~~~d~~e~l~~yp-~sFDl  246 (334)
                      .+..+|||+|||+|.+++.|++.-.....|+++|.++++++.+.++    ++.       ......+... .++ +.||.
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~-~~~~~~fD~  153 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPYDA  153 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc-cchhhhhhh
Confidence            3457999999999998887776311113689999999999877543    221       1111111111 233 89999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+++.++++++         .++.+.|||||.+++--
T Consensus       154 I~~~~~~~~ip---------~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         154 IHVGAAAPVVP---------QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EEECSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             hhhhcchhhcC---------HHHHhhcCCCcEEEEEE
Confidence            99998877654         36789999999999854

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.3e-10  Score=112.85  Aligned_cols=125  Identities=10%  Similarity=0.034  Sum_probs=78.9

Q ss_pred             CCCCccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCc
Q 019879          148 PGVSAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGL  226 (334)
Q Consensus       148 ~g~~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgl  226 (334)
                      ..++.+.|.+-.-.   .+.+   ++..++-....+|||+|||+|.++..++.. +.  ..|+|+|+++.|++.|.++.-
T Consensus       190 ~~fs~~vYGEl~~~---~i~~---Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         190 KAFSNYVYGELLPN---FLSD---VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             CSSGGGCCCCBCHH---HHHH---HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCccccCCHH---HHHH---HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHH
Confidence            34566777655442   2333   333333344578999999999999888764 42  368999999999998876521


Q ss_pred             c------------ch-hhhhcccC---CCCC---CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          227 I------------GI-YHDWCEAF---STYP---RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       227 i------------~~-~~d~~e~l---~~yp---~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .            +. .......+   ..++   ..+|+|++++. .|.   .++...|.||.|+|||||.|+..+.
T Consensus       262 e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~---~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         262 ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LFD---EDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             HHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TCC---HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             HHhhhhhhhccccccceeeeeechhhccccccccccceEEEEecc-cCc---hHHHHHHHHHHHhcCCCcEEEEecc
Confidence            0            00 00000111   0111   35678877643 232   3578999999999999999998763

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-10  Score=108.30  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=69.0

Q ss_pred             HHhhcCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc-----------Cc----cchhhhhcc
Q 019879          172 INRLLDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER-----------GL----IGIYHDWCE  235 (334)
Q Consensus       172 ll~~l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R-----------gl----i~~~~d~~e  235 (334)
                      ++..++-....+|||+|||+|.++..++.. +.  ..++|+|+++.++..|.+.           |+    +...+....
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            344344444579999999999998877653 43  3689999999998876543           11    112221111


Q ss_pred             cCCCCC-Ccc--ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          236 AFSTYP-RTY--DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       236 ~l~~yp-~sF--DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+ +|. ..|  |+|+++.+ .|.   .++...|.|+.|+|||||.+++..
T Consensus       221 ~~-~~~~~~~~advi~~~~~-~f~---~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         221 SE-EWRERIANTSVIFVNNF-AFG---PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             SH-HHHHHHHHCSEEEECCT-TTC---HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cc-ccccccCcceEEEEcce-ecc---hHHHHHHHHHHHhCCCCcEEEEec
Confidence            11 233 344  67776543 332   357899999999999999999865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.8e-10  Score=104.74  Aligned_cols=99  Identities=15%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcC--------------c---cchhh-hhcccC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG--------------L---IGIYH-DWCEAF  237 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rg--------------l---i~~~~-d~~e~l  237 (334)
                      +-....+|||+|||+|.++.+|+.. +.. ..|+++|.++++++.|.++-              .   +...+ |.++..
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~-G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCC-cEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence            3334589999999999999999873 111 35899999999999876531              0   11111 222222


Q ss_pred             CCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          238 STYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       238 ~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ..++ .+||.|+..     ++   ++..++.++.|+|||||.|++.-+
T Consensus       174 ~~~~~~~fD~V~LD-----~p---~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         174 EDIKSLTFDAVALD-----ML---NPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             -------EEEEEEC-----SS---STTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cccCCCCcceEeec-----Cc---CHHHHHHHHHHhccCCCEEEEEeC
Confidence            2344 789999763     22   234689999999999999998664

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.91  E-value=2.2e-09  Score=93.46  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=71.9

Q ss_pred             CCCCceEeeecccccH----HHHHHHhC---CCcEEEEEeccCChhhHHHHHHcCc---------cch------------
Q 019879          178 SGRYRNIMDMNAGFGG----FAAAIQSS---KLWVMNVVPTLADKNTLGVIYERGL---------IGI------------  229 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~----faa~L~~~---~v~v~nVv~vD~s~~~L~~a~~Rgl---------i~~------------  229 (334)
                      ..+.-+|+++|||+|.    +|..|.+.   ..+-..|++.|+++.+|+.|.+ |.         ...            
T Consensus        22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y~~~~~~~~~~~~~~~yf~~~~~~  100 (193)
T d1af7a2          22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIYRLSELKTLSPQQLQRYFMRGTGP  100 (193)
T ss_dssp             SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred             cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-CcccHHHHhhhhHHHHhhceeecCCC
Confidence            3445689999999997    45555442   1233579999999999987753 21         000            


Q ss_pred             ------------------hhhhcccCCCCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          230 ------------------YHDWCEAFSTYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       230 ------------------~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                                        .++.... .+.+ +.||+|.|.+||.++. ......++..+++.|+|||+|++...
T Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         101 HEGLVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             SCSEEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ccceeehHHHHHHHHHHhhhhcccc-ccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEecC
Confidence                              0000011 1233 8899999999999875 34567999999999999999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.87  E-value=1.4e-09  Score=97.61  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC--c--cchhhhhcccCCCCC--Cccce
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG--L--IGIYHDWCEAFSTYP--RTYDL  246 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg--l--i~~~~d~~e~l~~yp--~sFDl  246 (334)
                      +..+.-....+|||+|||+|.+++.|+...   ..|+++|.+++++..|.++-  .  +...+..  ....++  +.||.
T Consensus        63 l~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d--~~~g~~~~~pfD~  137 (224)
T d1vbfa_          63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGD--GTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESC--GGGCCGGGCCEEE
T ss_pred             HHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCc--hhhcchhhhhHHH
Confidence            333444456799999999999999888764   35899999999888877651  1  1112211  111233  77999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |++...+.+++         .++.+.|||||.+++-
T Consensus       138 Iiv~~a~~~ip---------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATAPTLL---------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred             HHhhcchhhhh---------HHHHHhcCCCCEEEEE
Confidence            99987776654         2456789999999884

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=3.6e-09  Score=97.52  Aligned_cols=133  Identities=14%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCC-CccceEEec--
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYP-RTYDLIHAH--  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp-~sFDlVha~--  250 (334)
                      ..+|||+|||+|-.+..|+..... ..|+++|+|+.++..|.+.    |+  +..++ |+.+   +++ ++||+|+|+  
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP  184 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSNPP  184 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEECCC
T ss_pred             ccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc---ccCCCceeEEEecch
Confidence            467999999999999988763211 4799999999999987653    33  22222 3222   344 799999998  


Q ss_pred             hh-----------hccccCc---------CCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccce-EE-EecCC
Q 019879          251 GL-----------FSLYKDK---------CNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD-TK-MVDHE  308 (334)
Q Consensus       251 ~v-----------fs~~~~~---------c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~-~~-~~~~~  308 (334)
                      ++           ..|-+..         ..+.+++.+..+.|+|||.+++--..+..+.+.+++....|. +. ..|. 
T Consensus       185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl-  263 (274)
T d2b3ta1         185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY-  263 (274)
T ss_dssp             CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT-
T ss_pred             hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC-
Confidence            11           1111100         113478999999999999999976555557778888777775 33 3332 


Q ss_pred             CCCCCCceEEEEE
Q 019879          309 DGPLVPEKILVAV  321 (334)
Q Consensus       309 ~~~~~~e~~l~~~  321 (334)
                         .+.++++++|
T Consensus       264 ---~g~~R~v~~r  273 (274)
T d2b3ta1         264 ---GDNERVTLGR  273 (274)
T ss_dssp             ---TSSEEEEEEE
T ss_pred             ---CCCceEEEEe
Confidence               2578898886

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=3.1e-08  Score=90.17  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ..+|||+|||+|.|+..++.++.  ..|+++|.++.+++.+.+.    |+.   ..++..+..++ ..+.||.|+++.. 
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p-  183 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-  183 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC-
T ss_pred             ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC-
Confidence            47999999999999998887763  3699999999988876543    432   22332222221 1288999987622 


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh-------hhHHHHHHHHhcccceEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIRDEV-------DEIIKVKKIVGGMRWDTKM  304 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~-------~~~~~i~~~~~~l~W~~~~  304 (334)
                            ..-..++.+..++|+|||++.+.+..       +..+.+.++......++..
T Consensus       184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ------CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence                  12245778889999999999775421       2445666676666666543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=2.6e-09  Score=99.92  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhh----hhcccCCCCCCccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYH----DWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~----d~~e~l~~yp~sFDlVha  249 (334)
                      ...+|||++||+|+|+.+++..   ...|+++|.|+.+++.+.+.    |+..  ..+    ++.+.+.....+||+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            3589999999999999998753   35799999999999977653    4421  111    111222223379999998


Q ss_pred             ch-hhcccc-----CcCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HG-LFSLYK-----DKCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~-vfs~~~-----~~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      .- .|+.-.     ...+...++..+.++|||||.|+++...
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            62 111100     0012346888999999999999998753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.62  E-value=1.2e-08  Score=92.15  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccch-hhhhcccCCCCCCccceEEechhhccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGI-YHDWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~-~~d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      ....++|||+|||+|.++.+|+++.-. +.++-.|.+ .+++.+....-+.. .+|.   +.+.| ..|+++..++||++
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLP-QVIENAPPLSGIEHVGGDM---FASVP-QGDAMILKAVCHNW  152 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH-HHHTTCCCCTTEEEEECCT---TTCCC-CEEEEEEESSGGGS
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecch-hhhhccCCCCCeEEecCCc---ccccc-cceEEEEehhhhhC
Confidence            466799999999999999999885322 356778875 44432111111111 1221   22344 45999999999987


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .+ .+...+|+.+++.|+|||.++|.|.
T Consensus       153 ~d-e~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         153 SD-EKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             CH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CH-HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            53 4567899999999999999999873

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=2.2e-08  Score=93.63  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhhhccc-------CCCCCCccceEEe
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHDWCEA-------FSTYPRTYDLIHA  249 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d~~e~-------l~~yp~sFDlVha  249 (334)
                      ..+|||++||+|+|+.+++..|+.  .|+++|.++.+++.+.+.    |+....+..+.+       +.....+||+|++
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            479999999999999999888753  699999999999877653    442221111111       1112379999998


Q ss_pred             chh-hcccc-C----cCCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          250 HGL-FSLYK-D----KCNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       250 ~~v-fs~~~-~----~c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      .-- |.... +    ..+...++....++|||||.|+++...
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            621 11000 0    012346888899999999999998754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.61  E-value=8.7e-08  Score=84.13  Aligned_cols=95  Identities=15%  Similarity=0.001  Sum_probs=59.5

Q ss_pred             CccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchh
Q 019879          151 SAESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIY  230 (334)
Q Consensus       151 ~~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~  230 (334)
                      .-|.|......=...+.    .....+.-..++|||+|||+|.++..++..+.  .+|+++|+++.+++.+++..-  ..
T Consensus        23 ~leQy~T~~~~a~~~~~----~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~--~~   94 (197)
T d1ne2a_          23 YLEQYPTDASTAAYFLI----EIYNDGNIGGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG--GV   94 (197)
T ss_dssp             ----CCCCHHHHHHHHH----HHHHHTSSBTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT--TS
T ss_pred             ccccCCCCHHHHHHHHH----HHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccc--cc
Confidence            45667666654211121    11123344568999999999999888877764  369999999999998876531  11


Q ss_pred             hhhcccCCCCCCccceEEechhh
Q 019879          231 HDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       231 ~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      .-.+.++..+++.||+|+++-=|
T Consensus        95 ~~~~~D~~~l~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          95 NFMVADVSEISGKYDTWIMNPPF  117 (197)
T ss_dssp             EEEECCGGGCCCCEEEEEECCCC
T ss_pred             cEEEEehhhcCCcceEEEeCccc
Confidence            11223344467899999998444

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=3.8e-07  Score=79.50  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=73.7

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-cc-hhhhhcccCCCCCCccceEEechhh
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-IG-IYHDWCEAFSTYPRTYDLIHAHGLF  253 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i~-~~~d~~e~l~~yp~sFDlVha~~vf  253 (334)
                      ++.....+|||+|||+|.++..++.+|.  ..|+++|+++.++..+.+.-. .+ .....+.+...++..||+|+++-=|
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF  119 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence            3444567999999999999988888775  379999999999998876421 01 1111122333456889999998544


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE--eChhhHHHHHHHHhcccceEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR--DEVDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~--D~~~~~~~i~~~~~~l~W~~~  303 (334)
                      .......+... +   .+.+.+++.++..  .......-++.+.....|.+.
T Consensus       120 ~~~~~~~d~~~-l---~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~  167 (201)
T d1wy7a1         120 GSQRKHADRPF-L---LKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVT  167 (201)
T ss_dssp             SSSSTTTTHHH-H---HHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             ccccccccHHH-H---HHHHhhcccchhcccchHHHHHHHHHHHhhcCceEE
Confidence            33222223322 2   2334445544433  233344456666666677654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=3.8e-08  Score=85.95  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=81.1

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-----cchhhhhccc----CCCCC-C
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-----IGIYHDWCEA----FSTYP-R  242 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-----i~~~~d~~e~----l~~yp-~  242 (334)
                      +..+.......+||++||+|+++.+++++-.. ..|+++|.++.|++.+.++.-     +..++.....    +..+. +
T Consensus        16 i~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~   94 (192)
T d1m6ya2          16 IEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE   94 (192)
T ss_dssp             HHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred             HHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCC
Confidence            33445555689999999999999999885222 479999999999999987631     1122221111    22355 8


Q ss_pred             ccceEEechhhccc--c----CcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHh
Q 019879          243 TYDLIHAHGLFSLY--K----DKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVG  296 (334)
Q Consensus       243 sFDlVha~~vfs~~--~----~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~  296 (334)
                      +||.|....-+|..  .    ........|.++.++|+|||.+++...+..- .-++.+++
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~  155 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR  155 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence            89988766433321  1    1123568999999999999999888765422 23444443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=6.2e-08  Score=86.31  Aligned_cols=95  Identities=15%  Similarity=0.035  Sum_probs=63.1

Q ss_pred             CCceEeeecccccHHHHHHHhC----CC-cEEEEEeccCChhhHHHHHHcC----c-------cchhhhhcccCCCCCCc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS----KL-WVMNVVPTLADKNTLGVIYERG----L-------IGIYHDWCEAFSTYPRT  243 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~----~v-~v~nVv~vD~s~~~L~~a~~Rg----l-------i~~~~d~~e~l~~yp~s  243 (334)
                      +..+|||+|||+|.+++.|...    ++ ....|+++|.+++++..+.++-    +       +...+..+....+-.+.
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~  159 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP  159 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence            3579999999999998888652    21 1125899999988888776541    0       11122111111112278


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ||.|++...+.++++         .+.+.|||||.+++--
T Consensus       160 fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         160 YNAIHVGAAAPDTPT---------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             EEEEEECSCBSSCCH---------HHHHTEEEEEEEEEEE
T ss_pred             eeeEEEEeechhchH---------HHHHhcCCCcEEEEEE
Confidence            999999987765542         4568999999998853

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.51  E-value=2.2e-08  Score=83.55  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcccCCCCC-CccceEEech
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ...+|||+|||+|.++...+.+|+  .+|+.+|.++.+++.+.+.    ++.   ..+...+..+...+ +.||+|++.-
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP   91 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP   91 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence            457999999999999988888876  3799999999888866543    321   12222222222233 8999999862


Q ss_pred             hhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeC
Q 019879          252 LFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDE  284 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~  284 (334)
                      =+..    .....++..+  .++|+|||.+++...
T Consensus        92 Py~~----~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          92 PYAK----ETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhcc----chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            1110    1123344333  478999999998654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=3.9e-07  Score=83.50  Aligned_cols=134  Identities=13%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhh-hhcccCCCCCCccceEEec--
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAFSTYPRTYDLIHAH--  250 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~-d~~e~l~~yp~sFDlVha~--  250 (334)
                      ..+|+|+|||+|..+..++..+-  ..|+++|+|+..+..|.+.    |+..   ..+ +|.+.++...+.||+|+||  
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP  188 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  188 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             ccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence            46899999999998888776432  4689999999999987653    3311   112 2333222122789999998  


Q ss_pred             hh-----hc----cccC------cCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceEEEecCCCCCCCCc
Q 019879          251 GL-----FS----LYKD------KCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDTKMVDHEDGPLVPE  315 (334)
Q Consensus       251 ~v-----fs----~~~~------~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~~~~~~~~~~~~~e  315 (334)
                      ++     +.    |.+.      ...+..+-+=+.+.|+|||++++--..+..+.+++++....|   ..|.-    +.+
T Consensus       189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~---~kDl~----g~~  261 (271)
T d1nv8a_         189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF---LKDSA----GKY  261 (271)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEE---EECTT----SSE
T ss_pred             ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCE---EeccC----CCc
Confidence            11     00    1100      000111111145789999999997766666778888777666   23332    689


Q ss_pred             eEEEEEec
Q 019879          316 KILVAVKQ  323 (334)
Q Consensus       316 ~~l~~~K~  323 (334)
                      ++++++|+
T Consensus       262 R~~~~~k~  269 (271)
T d1nv8a_         262 RFLLLNRR  269 (271)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEc
Confidence            99999986

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.45  E-value=3.9e-07  Score=85.04  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc----hhh----hhcccCCCCCCccceEE
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG----IYH----DWCEAFSTYPRTYDLIH  248 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~----~~~----d~~e~l~~yp~sFDlVh  248 (334)
                      .++|||+.||+|+|+.+++..+.  ..|+++|.++.+++.+.+.    |+-.    .+.    ++.+.+..-.+.||+|+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            47999999999999988877664  3589999999888876643    4421    111    11111111236899999


Q ss_pred             ec-hhhccc-cCc----CCHHHHHHHHHHhhcCCeEEEEEeCh
Q 019879          249 AH-GLFSLY-KDK----CNIEDILLEMDRILRPEGAIIIRDEV  285 (334)
Q Consensus       249 a~-~vfs~~-~~~----c~~~~~L~Em~RVLRPGG~lii~D~~  285 (334)
                      +. -.|..- ...    .+...++....++|+|||+|+++...
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            85 111110 000    12446888889999999999998754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.44  E-value=1.2e-07  Score=84.17  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCCC--Cccce
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTYP--RTYDL  246 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~yp--~sFDl  246 (334)
                      ++-.+..+|||+|||+|.+++.|+.. +   ..|+.+|..++++..+.++    |+.  ...+...  ...++  +.||.
T Consensus        74 L~l~~g~~VLeIGsGsGY~taila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~--~~g~~~~~pfD~  148 (215)
T d1jg1a_          74 ANLKPGMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFPPKAPYDV  148 (215)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCGGGCCEEE
T ss_pred             hccCccceEEEecCCCChhHHHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc--ccCCcccCccee
Confidence            34444579999999999999888763 3   2488999998888876654    321  1222111  11233  88999


Q ss_pred             EEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          247 IHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       247 Vha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      |++.....++++     .    +..-|||||.+++-
T Consensus       149 Iiv~~a~~~ip~-----~----l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         149 IIVTAGAPKIPE-----P----LIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEECSBBSSCCH-----H----HHHTEEEEEEEEEE
T ss_pred             EEeecccccCCH-----H----HHHhcCCCCEEEEE
Confidence            999877766542     2    34569999999874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.3e-07  Score=78.65  Aligned_cols=132  Identities=17%  Similarity=0.084  Sum_probs=85.5

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCC-----CCCCccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFS-----TYPRTYD  245 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~-----~yp~sFD  245 (334)
                      .+.++||++|||+|.-+.+|++.=..-..|+.+|.++.....|.+.    |+.   .... +-.+.++     ..+++||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            3468999999999999988886310113689999998877766543    331   1111 1111111     1248999


Q ss_pred             eEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeCh------------hhHHHH----HHHHhcccceEEEecCCC
Q 019879          246 LIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEV------------DEIIKV----KKIVGGMRWDTKMVDHED  309 (334)
Q Consensus       246 lVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i----~~~~~~l~W~~~~~~~~~  309 (334)
                      +|+..+      +.......+..+.+.|||||.+++.|..            .....|    +.+.+.-+|.+...-.  
T Consensus       138 ~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi--  209 (219)
T d2avda1         138 VAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL--  209 (219)
T ss_dssp             EEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred             EEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec--
Confidence            998862      2345678889999999999999997642            111223    3346677888775422  


Q ss_pred             CCCCCceEEEEEe
Q 019879          310 GPLVPEKILVAVK  322 (334)
Q Consensus       310 ~~~~~e~~l~~~K  322 (334)
                          .+++++|+|
T Consensus       210 ----gdGl~ia~K  218 (219)
T d2avda1         210 ----GDGLTLAFK  218 (219)
T ss_dssp             ----TTCEEEEEE
T ss_pred             ----CCeeEEEEe
Confidence                346999988

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=1.8e-07  Score=79.54  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-hhhhhcccC---CCCC-CccceEEech
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-IYHDWCEAF---STYP-RTYDLIHAHG  251 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~~~d~~e~l---~~yp-~sFDlVha~~  251 (334)
                      ..+|||+|||+|.++...+.+++   .|+.+|.++.+++.+.+.    |+.. +....+..+   .... .+||+|+++-
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            36899999999999998888885   477899999999876543    3311 111111111   1123 7899998862


Q ss_pred             hhccccCcCCHHHHHHHH--HHhhcCCeEEEEEeChh
Q 019879          252 LFSLYKDKCNIEDILLEM--DRILRPEGAIIIRDEVD  286 (334)
Q Consensus       252 vfs~~~~~c~~~~~L~Em--~RVLRPGG~lii~D~~~  286 (334)
                      =|+     .+....+.++  ...|+|||.+++....+
T Consensus       119 PY~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         119 PYA-----MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTT-----SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             ccc-----cCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence            111     1223334443  35899999999865443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.32  E-value=1.5e-07  Score=84.26  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=67.6

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCcc-chhhhhcccCCCCCCccceEEechhhcccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLI-GIYHDWCEAFSTYPRTYDLIHAHGLFSLYK  257 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli-~~~~d~~e~l~~yp~sFDlVha~~vfs~~~  257 (334)
                      ...++|||+|||+|.++..|+++-.. +.++..|.+ .+++.+....-+ ...+|..+   +.|. .|++...+++|+..
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~~~~~~r~~~~~~d~~~---~~P~-ad~~~l~~vlh~~~  153 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLP-HVIEDAPSYPGVEHVGGDMFV---SIPK-ADAVFMKWICHDWS  153 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECT-TTTTTCCCCTTEEEEECCTTT---CCCC-CSCEECSSSSTTSC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccH-HhhhhcccCCceEEecccccc---cCCC-cceEEEEEEeecCC
Confidence            34689999999999999999985222 357888886 454433222111 12222222   3442 46677788888764


Q ss_pred             CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          258 DKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       258 ~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      + .+...+|+++.+.|+|||.++|.|.
T Consensus       154 d-~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         154 D-EHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             H-HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             H-HHHHHHHHHHHHhcCCCceEEEEEE
Confidence            3 4567899999999999999999864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.4e-07  Score=81.68  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc---chhh-hhcccCC----CCC-Cc
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI---GIYH-DWCEAFS----TYP-RT  243 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~-d~~e~l~----~yp-~s  243 (334)
                      ...++++||++|||+|..+.+|++.--....|+.+|.++++++.+.+.    |+.   .... +..+.++    .++ ++
T Consensus        53 ~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          53 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence            334568999999999999998886311113589999999888876532    542   1111 1112222    244 78


Q ss_pred             cceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC-----hhhHHHHHHHHhcccceEE
Q 019879          244 YDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE-----VDEIIKVKKIVGGMRWDTK  303 (334)
Q Consensus       244 FDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~~~~~l~W~~~  303 (334)
                      ||+|+..+--+.+    .....+.|..|.|||||.+++.|.     .+..+.++.   .-+|...
T Consensus       133 ~D~ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~  190 (214)
T d2cl5a1         133 LDMVFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECT  190 (214)
T ss_dssp             EEEEEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEE
T ss_pred             cceeeeccccccc----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeeh
Confidence            9999886322211    123457788899999998776552     234444443   4456554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=9.8e-07  Score=79.15  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccC
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKD  258 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~  258 (334)
                      ...++|||+|||+|.++..++++--. ..++..|.+ +.++.+....-+....   .++......+|+++..++||++.+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~~~~~~rv~~~~---gD~f~~~p~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRP-QVVENLSGSNNLTYVG---GDMFTSIPNADAVLLKYILHNWTD  153 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECH-HHHTTCCCBTTEEEEE---CCTTTCCCCCSEEEEESCGGGSCH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCC-CeEEEecCH-HHHHhCcccCceEEEe---cCcccCCCCCcEEEEEeecccCCh
Confidence            35688999999999999999885222 367888885 4544322111111111   122111246799999999998753


Q ss_pred             cCCHHHHHHHHHHhhcCC---eEEEEEeC
Q 019879          259 KCNIEDILLEMDRILRPE---GAIIIRDE  284 (334)
Q Consensus       259 ~c~~~~~L~Em~RVLRPG---G~lii~D~  284 (334)
                       .+...+|+.+.+.|+||   |.++|.|.
T Consensus       154 -~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         154 -KDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             -HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             -HHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence             34568999999999999   77888764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=6.7e-06  Score=75.43  Aligned_cols=145  Identities=11%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             CCCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHHHc----Cc-cchhhhhcccCCCCC-Cccce
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIYER----GL-IGIYHDWCEAFSTYP-RTYDL  246 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~~R----gl-i~~~~d~~e~l~~yp-~sFDl  246 (334)
                      ......+|||.+||+|+|+.++.+    +...-.+++|+|+++.++..|...    +. ....+  ...+...+ ..||+
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~  191 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDV  191 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--cccccccccccccc
Confidence            444567899999999999887753    333446799999998888776543    11 11111  11222334 88999


Q ss_pred             EEechhhcccc--------------CcCCHH-HHHHHHHHhhcCCeEEEEEeChh-----hHHHHHHHHhcccceEEEec
Q 019879          247 IHAHGLFSLYK--------------DKCNIE-DILLEMDRILRPEGAIIIRDEVD-----EIIKVKKIVGGMRWDTKMVD  306 (334)
Q Consensus       247 Vha~~vfs~~~--------------~~c~~~-~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~~~~~l~W~~~~~~  306 (334)
                      |+++-=|....              ...+.. .++..+.+.|+|||.+++--+..     .-..+++.+....+-..+.+
T Consensus       192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~  271 (328)
T d2f8la1         192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK  271 (328)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence            99984443210              001122 36777999999999876654332     23456665444444333333


Q ss_pred             CCC----CCCCCceEEEEEec
Q 019879          307 HED----GPLVPEKILVAVKQ  323 (334)
Q Consensus       307 ~~~----~~~~~e~~l~~~K~  323 (334)
                      ...    +...+--+||.+|+
T Consensus       272 lp~~~F~~~~~~t~ilvl~K~  292 (328)
T d2f8la1         272 LPETLFKSEQARKSILILEKA  292 (328)
T ss_dssp             CCGGGSCC-CCCEEEEEEEEC
T ss_pred             CCccccCCCCCCeEEEEEECC
Confidence            221    22244568888885

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1.3e-05  Score=70.44  Aligned_cols=128  Identities=10%  Similarity=0.089  Sum_probs=80.8

Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCcc--chh
Q 019879          159 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLI--GIY  230 (334)
Q Consensus       159 ~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli--~~~  230 (334)
                      ...|.+++.+-..+...+.   ..+|+|+|+|.|-  +..++....   .+++-+|.+..-..+    +.+-|+.  ..+
T Consensus        47 ~~~~~rHi~DSl~~~~~~~---~~~ilDiGsGaG~PGi~laI~~p~---~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~  120 (207)
T d1jsxa_          47 NEMLVRHILDSIVVAPYLQ---GERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFLRQVQHELKLENIEPV  120 (207)
T ss_dssp             -CHHHHHHHHHHHHGGGCC---SSEEEEETCTTTTTHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred             HHHHHHHhcchHhhhhhhc---CCceeeeeccCCceeeehhhhccc---ceEEEEecchHHHHHHHHHHHHcCCcceeee
Confidence            3455555543232333443   3589999999994  444554444   468999987654443    3333552  334


Q ss_pred             hhhcccCCCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccceE
Q 019879          231 HDWCEAFSTYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWDT  302 (334)
Q Consensus       231 ~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~~  302 (334)
                      ++-.|.+. ...+||+|+|..+       ..+..++.-+...|+|||.+++.-.....++++..-  ..|+.
T Consensus       121 ~~R~E~~~-~~~~fD~V~sRA~-------~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~  182 (207)
T d1jsxa_         121 QSRVEEFP-SEPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV  182 (207)
T ss_dssp             ECCTTTSC-CCSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred             ccchhhhc-cccccceehhhhh-------cCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence            44455432 2378999998733       347788888999999999999998766666665543  35554

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=1.2e-06  Score=81.68  Aligned_cols=101  Identities=20%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccchhhh-hcccC-------CCCCCccceE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIGIYHD-WCEAF-------STYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~~~~d-~~e~l-------~~yp~sFDlV  247 (334)
                      +..+|||+.||+|+|+.+++..+.   .|+.+|.|..+++.|.+.    |+....+. .+++.       ....+.||+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            357999999999999999998874   589999999999987653    33211111 11221       0123789999


Q ss_pred             Eech-hhccccC------cCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          248 HAHG-LFSLYKD------KCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       248 ha~~-vfs~~~~------~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ++.- .|..-+.      ..++..++..+.++|+|||.+++..
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9851 1211110      1123456667888999999766553

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=1.4e-05  Score=71.69  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=93.3

Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCceEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHH----HHHcCcc--chh
Q 019879          159 SNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGV----IYERGLI--GIY  230 (334)
Q Consensus       159 ~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~----a~~Rgli--~~~  230 (334)
                      .+.|.+++.+-..++..+......+|+|+|+|.|-  +..++....   .+++-+|.+..-..+    +.+-||.  ..+
T Consensus        49 ~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~---~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~  125 (239)
T d1xdza_          49 KEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLENTTFC  125 (239)
T ss_dssp             HHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             HHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCC---ccceeecchHHHHHHHHHHHHHhCCCCcEEE
Confidence            46666665443323333433345789999999994  444444444   368888887554332    3334653  234


Q ss_pred             hhhcccCCC---CCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhh---HHHHHHHHhcccceEE-
Q 019879          231 HDWCEAFST---YPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDE---IIKVKKIVGGMRWDTK-  303 (334)
Q Consensus       231 ~d~~e~l~~---yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~~~~~l~W~~~-  303 (334)
                      +.-+|.+..   +...||+|+|..|       ..+..++.=....|+|||.+++--....   ++..++....+.++.. 
T Consensus       126 ~~R~E~~~~~~~~~~~~D~v~sRAv-------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         126 HDRAETFGQRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELEN  198 (239)
T ss_dssp             ESCHHHHTTCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred             eehhhhccccccccccceEEEEhhh-------hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEE
Confidence            554555432   3478999999743       3467889999999999999999876554   4444455666666653 


Q ss_pred             --EecCCCCCCCCceEEEEEeccc
Q 019879          304 --MVDHEDGPLVPEKILVAVKQYW  325 (334)
Q Consensus       304 --~~~~~~~~~~~e~~l~~~K~~w  325 (334)
                        .+... .....-.+++.+|.-=
T Consensus       199 v~~~~lp-~~~~~r~lv~i~K~~~  221 (239)
T d1xdza_         199 IHSFKLP-IEESDRNIMVIRKIKN  221 (239)
T ss_dssp             EEEEECT-TTCCEEEEEEEEECSC
T ss_pred             EEEEeCC-CCCCCEEEEEEEECCC
Confidence              22211 1112335777776543

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=1e-06  Score=75.39  Aligned_cols=144  Identities=16%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhh
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLF  253 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vf  253 (334)
                      .+......+|||.|||+|+|+..+.++.....++.++|+++.++..+....+  ...+   .+...+ ..||+|+++--+
T Consensus        14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~--~~~~---~~~~~~~~~fd~ii~npP~   88 (223)
T d2ih2a1          14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEG--ILAD---FLLWEPGEAFDLILGNPPY   88 (223)
T ss_dssp             HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEE--EESC---GGGCCCSSCEEEEEECCCC
T ss_pred             hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccccee--eeee---hhccccccccceecccCcc
Confidence            3445556899999999999998887642223468999998765433221110  1111   111223 899999998555


Q ss_pred             cccc-------------------------CcCCH-HHHHHHHHHhhcCCeEEEEEeChh-----hHHHHHHH-Hhcccce
Q 019879          254 SLYK-------------------------DKCNI-EDILLEMDRILRPEGAIIIRDEVD-----EIIKVKKI-VGGMRWD  301 (334)
Q Consensus       254 s~~~-------------------------~~c~~-~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~~-~~~l~W~  301 (334)
                      ....                         ...++ ..++....+.|+|||.+++--+..     .-+.+++. ++.....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~  168 (223)
T d2ih2a1          89 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTS  168 (223)
T ss_dssp             CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEE
T ss_pred             ccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEE
Confidence            3211                         11112 245677889999999987764332     22344444 4433333


Q ss_pred             EEEec-CCCCCCCCceEEEEEec
Q 019879          302 TKMVD-HEDGPLVPEKILVAVKQ  323 (334)
Q Consensus       302 ~~~~~-~~~~~~~~e~~l~~~K~  323 (334)
                      +.... .-.+....--+|+.+|+
T Consensus       169 i~~~~~~F~~~~v~t~i~~~~k~  191 (223)
T d2ih2a1         169 VYYLGEVFPQKKVSAVVIRFQKS  191 (223)
T ss_dssp             EEEEESCSTTCCCCEEEEEEESS
T ss_pred             EEcchhcCCCCCCcEEEEEEEeC
Confidence            33221 11122244566777663

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=3.8e-06  Score=71.74  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cc--cchhh-hhcccCCCCCCccceEEechhhc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GL--IGIYH-DWCEAFSTYPRTYDLIHAHGLFS  254 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gl--i~~~~-d~~e~l~~yp~sFDlVha~~vfs  254 (334)
                      .+|||++||+|.++...+.+|+.  .|+.+|.+..+++.+.+.    +.  ...+. |..+-+......||+|++.-=+.
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  122 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence            68999999999999988888874  689999999888866542    21  11111 11111222338899999972221


Q ss_pred             cccCcCCHHHHHHHHH--HhhcCCeEEEEEe
Q 019879          255 LYKDKCNIEDILLEMD--RILRPEGAIIIRD  283 (334)
Q Consensus       255 ~~~~~c~~~~~L~Em~--RVLRPGG~lii~D  283 (334)
                          ....+.++.-+.  .+|+|+|.+++-.
T Consensus       123 ----~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         123 ----RGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             ----TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ----cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence                123455555554  4799999999954

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.95  E-value=1.5e-05  Score=73.98  Aligned_cols=145  Identities=12%  Similarity=0.011  Sum_probs=84.7

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c-----cchhh-hhcccCCCCCCccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L-----IGIYH-DWCEAFSTYPRTYD  245 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l-----i~~~~-d~~e~l~~yp~sFD  245 (334)
                      ..++++||.+|.|.|+.+..+++.. .+.+|+.+|+++.+++++.+.-      .     +..+. |..+-+...++.||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            4567999999999999999988753 2357899999999988876541      1     01111 11111112347899


Q ss_pred             eEEechhhccccC--cCC--HHHHHHHHHHhhcCCeEEEEEeC------hhhHHHHHHHHhcccceEEEecC-C-CCCCC
Q 019879          246 LIHAHGLFSLYKD--KCN--IEDILLEMDRILRPEGAIIIRDE------VDEIIKVKKIVGGMRWDTKMVDH-E-DGPLV  313 (334)
Q Consensus       246 lVha~~vfs~~~~--~c~--~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~~~~~l~W~~~~~~~-~-~~~~~  313 (334)
                      +|+....=.+...  ...  -..+++.+.|.|+|||.+++.-.      .+....|.+.+++.=-.+..+.. . ..+ .
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~-~  232 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFF-L  232 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGT-E
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcC-C
Confidence            9997531101000  001  15789999999999999998431      23445555554444333433211 0 000 1


Q ss_pred             CceEEEEEecc
Q 019879          314 PEKILVAVKQY  324 (334)
Q Consensus       314 ~e~~l~~~K~~  324 (334)
                      .-.+++|.|..
T Consensus       233 ~w~f~~aS~~~  243 (312)
T d1uira_         233 NFGFLLASDAF  243 (312)
T ss_dssp             EEEEEEEESSS
T ss_pred             CCEeEEEeCCC
Confidence            23577887753

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.92  E-value=1.7e-05  Score=70.34  Aligned_cols=98  Identities=14%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             CCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHc----Ccc---chhhhhcc-cCCC------CCCcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYER----GLI---GIYHDWCE-AFST------YPRTY  244 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~R----gli---~~~~d~~e-~l~~------yp~sF  244 (334)
                      +.++||.+|+++|.-+..|++. +- ...|+.+|.+++....|.+.    |+.   ...+..+. .++.      ..++|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCC-CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4689999999999988888752 11 13588889888777665442    431   11111111 1111      24689


Q ss_pred             ceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          245 DLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |+|+...      +.......+..+.+.|||||.+++.+-
T Consensus       138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence            9998862      234567888899999999999999763

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=1.1e-06  Score=75.62  Aligned_cols=139  Identities=10%  Similarity=0.058  Sum_probs=73.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHH---cCccchhhhhcccCCC-CCCccceEEechhhcc
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYE---RGLIGIYHDWCEAFST-YPRTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~---Rgli~~~~d~~e~l~~-yp~sFDlVha~~vfs~  255 (334)
                      +..+|||+||++|+|...+.++......|+++|.. +|-.+-.-   .|-+............ ....||+|.|...+.-
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~-~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL-PMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS-CCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecc-cccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence            34789999999999999887641111357788875 33211000   0111100000000001 2378999999865442


Q ss_pred             c--------cCcCCHHHHHHHHHHhhcCCeEEEEEe--Chh---hHHHHHHHHhcccceEEEecCCCCCCCCceEEEEEe
Q 019879          256 Y--------KDKCNIEDILLEMDRILRPEGAIIIRD--EVD---EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKILVAVK  322 (334)
Q Consensus       256 ~--------~~~c~~~~~L~Em~RVLRPGG~lii~D--~~~---~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  322 (334)
                      -        ..-.-....+.=+.++|||||.|++--  ..+   .+..++..++.++  +..+.+-. +...|.++||+.
T Consensus       101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~--~~KP~aSR-~~SsE~Ylv~~g  177 (180)
T d1ej0a_         101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK--VRKPDSSR-ARSREVYIVATG  177 (180)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEE--EECCTTSC-TTCCEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEE--EECCCCcc-cCCceEEEEEec
Confidence            1        100112256666789999999999953  222   3344444444333  22222211 336899999974

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.6e-05  Score=68.13  Aligned_cols=121  Identities=9%  Similarity=-0.026  Sum_probs=75.4

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhh-hhcccC-C---CCC-Cccc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYH-DWCEAF-S---TYP-RTYD  245 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~-d~~e~l-~---~yp-~sFD  245 (334)
                      ....+|||+|||+|-.+..|+.+- ...+++++|+++.+++.|.+.    ++..   ..+ ++.+.+ .   ... .+||
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             cccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            345689999999999988887641 113799999999999987654    2211   111 111221 1   122 6899


Q ss_pred             eEEechhhccccC----------------------c----------CCHHHHHHHHHHhhcCCeEEEEEeC-hhhHHHHH
Q 019879          246 LIHAHGLFSLYKD----------------------K----------CNIEDILLEMDRILRPEGAIIIRDE-VDEIIKVK  292 (334)
Q Consensus       246 lVha~~vfs~~~~----------------------~----------c~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~  292 (334)
                      +|+|+-=|.....                      .          ..+.+++.|-.+.++..|++.+--. .+.++.|.
T Consensus       139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~  218 (250)
T d2h00a1         139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK  218 (250)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred             EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence            9999832221000                      0          0144677888889999998865433 34556677


Q ss_pred             HHHhcccc
Q 019879          293 KIVGGMRW  300 (334)
Q Consensus       293 ~~~~~l~W  300 (334)
                      ++++....
T Consensus       219 ~~L~~~g~  226 (250)
T d2h00a1         219 EELRIQGV  226 (250)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            77666665

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.86  E-value=1.1e-05  Score=69.02  Aligned_cols=98  Identities=19%  Similarity=0.164  Sum_probs=65.0

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc---hhhhhccc-CCC---CCCccceEE
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG---IYHDWCEA-FST---YPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~---~~~d~~e~-l~~---yp~sFDlVh  248 (334)
                      ...+|||+.||+|.++...+.+|+.  .|+.+|.+..++..+.+.    +...   .....+.. +..   -...||+|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            4589999999999999999888863  689999999888876543    2211   11111111 111   125799998


Q ss_pred             echhhccccCcCCHHHHHHHHH--HhhcCCeEEEEEe
Q 019879          249 AHGLFSLYKDKCNIEDILLEMD--RILRPEGAIIIRD  283 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~--RVLRPGG~lii~D  283 (334)
                      +.-=+    .......+|..+.  .+|+|+|++++-.
T Consensus       119 lDPPY----~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         119 LDPPY----AKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ECCCG----GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhh----hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            86211    1224566676664  4799999998853

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=7.1e-05  Score=64.15  Aligned_cols=126  Identities=17%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc--cchhhhhccc----CCCCC-Cccc
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL--IGIYHDWCEA----FSTYP-RTYD  245 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl--i~~~~d~~e~----l~~yp-~sFD  245 (334)
                      +..|.......++|+.+|.||.+..|++++   ..|+++|..+.++..+..+-.  ...++.....    +..+. ..+|
T Consensus        11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          11 LDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             HHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             HHhcCCCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccC
Confidence            333444556799999999999999999976   368999999999988876522  1222222221    22345 7899


Q ss_pred             eEEechhhcc--ccCcC----CHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccce
Q 019879          246 LIHAHGLFSL--YKDKC----NIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWD  301 (334)
Q Consensus       246 lVha~~vfs~--~~~~c----~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~  301 (334)
                      .|....-++.  +.+..    .....|.....+|+|||.+++-..+..- ..++.+++.-.++
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            9988754442  21111    2345677779999999999988765422 2355555543333

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.67  E-value=0.00011  Score=66.67  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             CCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc---------------chhhhhcccCCCC
Q 019879          177 DSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI---------------GIYHDWCEAFSTY  240 (334)
Q Consensus       177 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li---------------~~~~d~~e~l~~y  240 (334)
                      ...++++||-+|+|.|+.+..+++.+.  ..|+.+|+++.+++++.+-- +.               .+++..+..+..-
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             cCCCCceEEEecCCchHHHHHHHHhCC--ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            345679999999999999999888764  35788889989998876421 10               0111101011111


Q ss_pred             CCccceEEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEe
Q 019879          241 PRTYDLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       241 p~sFDlVha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .++||+|+... +........  -..+++.+.|.|+|||.+++.-
T Consensus       147 ~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         147 NRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            37899999763 221110011  1478999999999999999853

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=7.4e-05  Score=68.75  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCc-c---------chhhhhc-ccCCCCCCccce
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGL-I---------GIYHDWC-EAFSTYPRTYDL  246 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgl-i---------~~~~d~~-e~l~~yp~sFDl  246 (334)
                      ..++++||=+|.|.|+.+..+++.. .+..|+.+|+++.+++.+.+-.- .         ..+++.+ +-+...++.||+
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            4567999999999999999998864 23568888999889888765321 0         0111111 112223588999


Q ss_pred             EEechhhccccCcC--CHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          247 IHAHGLFSLYKDKC--NIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       247 Vha~~vfs~~~~~c--~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      |++...-.......  --..+++.+.|.|+|||.+++.-.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            99863221110001  125899999999999999999653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.49  E-value=7.5e-05  Score=69.30  Aligned_cols=145  Identities=11%  Similarity=0.045  Sum_probs=82.4

Q ss_pred             CCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC-cc-c--------hhhhhccc-CCCCCCccce
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG-LI-G--------IYHDWCEA-FSTYPRTYDL  246 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg-li-~--------~~~d~~e~-l~~yp~sFDl  246 (334)
                      ..++++||-+|-|.|+.+..+++.. .+..|+.+|+++.+++.+.+-- .. +        .+++.+-. +...+++||+
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            4567999999999999999999854 2357899999988988876531 00 0        01100000 1113488999


Q ss_pred             EEechhhccccC-cCCHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecC--CCCCCCCceEE
Q 019879          247 IHAHGLFSLYKD-KCNIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDH--EDGPLVPEKIL  318 (334)
Q Consensus       247 Vha~~vfs~~~~-~c~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~--~~~~~~~e~~l  318 (334)
                      |+....-..... .---..++..+.|+|+|||.++..-..     +.+..+.+.++..=..+..+..  ..-|.+.-.++
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~  262 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYL  262 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceee
Confidence            998632211110 011247899999999999999997432     2334444444443333433221  11111223477


Q ss_pred             EEEec
Q 019879          319 VAVKQ  323 (334)
Q Consensus       319 ~~~K~  323 (334)
                      +|.|.
T Consensus       263 ~aSk~  267 (312)
T d2b2ca1         263 ICAKN  267 (312)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            88774

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=0.00016  Score=66.10  Aligned_cols=107  Identities=14%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cch-hhhhcccCCCCC-Cc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGI-YHDWCEAFSTYP-RT  243 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~-~~d~~e~l~~yp-~s  243 (334)
                      +...++++||=+|-|.|+.+..+++.. .+..|+.+|+++.+++++++--      +    ... ..|-.+-+...+ ++
T Consensus        76 ~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~  154 (290)
T d1xj5a_          76 CSIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS  154 (290)
T ss_dssp             TTSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             hhCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence            344567999999999999999998863 1346888899988888876531      0    001 111111121234 79


Q ss_pred             cceEEechhhccc-c-CcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          244 YDLIHAHGLFSLY-K-DKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       244 FDlVha~~vfs~~-~-~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      ||+|+... +.-. . ..---..+++.+.|+|+|||.+++.-.
T Consensus       155 yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         155 YDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            99999752 2110 0 000125799999999999999999743

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00015  Score=66.14  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC------c----cchhhhhccc-CCCCCCcc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG------L----IGIYHDWCEA-FSTYPRTY  244 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg------l----i~~~~d~~e~-l~~yp~sF  244 (334)
                      +....+++||=+|-|.|+.+..+.+... +.+|+.+|+.+++++++.+--      +    ..++++.+-. +-..+++|
T Consensus        74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y  152 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF  152 (285)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             hhCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence            3445679999999999999999998631 357888899989998876531      0    0111111111 11234889


Q ss_pred             ceEEechhhccccCcCC--HHHHHHHHHHhhcCCeEEEEEe
Q 019879          245 DLIHAHGLFSLYKDKCN--IEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       245 DlVha~~vfs~~~~~c~--~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      |+|++.. +.-......  -..+++.+.|.|+|||.+++.-
T Consensus       153 DvIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         153 DVIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            9999873 221100001  1378999999999999999964

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.0018  Score=59.32  Aligned_cols=123  Identities=13%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             HHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhccc-CCC--C
Q 019879          170 KKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEA-FST--Y  240 (334)
Q Consensus       170 ~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~-l~~--y  240 (334)
                      ..++..++.....+|||+-||+|.|+..|+++.   ..|+++|.++.+++.|.+.    |+.  ..++...+. +..  .
T Consensus       202 ~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~  278 (358)
T d1uwva2         202 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW  278 (358)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred             HHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence            334445555556899999999999999999875   3689999999888866542    321  112221222 211  2


Q ss_pred             -CCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChhhH-HHHHHHHhcccceEE
Q 019879          241 -PRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVDEI-IKVKKIVGGMRWDTK  303 (334)
Q Consensus       241 -p~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~~~~~l~W~~~  303 (334)
                       ...||+|+..      +.+.....++.++.+ ++|.-.++++=++..+ .-++.+.+ -.|+..
T Consensus       279 ~~~~~d~vilD------PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~  335 (358)
T d1uwva2         279 AKNGFDKVLLD------PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIA  335 (358)
T ss_dssp             GTTCCSEEEEC------CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEE
T ss_pred             hhccCceEEeC------CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEe
Confidence             2779999887      666666677777766 5899999999655533 33544432 235443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.36  E-value=0.00052  Score=62.08  Aligned_cols=145  Identities=13%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             CCCCceEeeecccccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcC-----c-----cchhhhhccc-CCCCCCccc
Q 019879          178 SGRYRNIMDMNAGFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERG-----L-----IGIYHDWCEA-FSTYPRTYD  245 (334)
Q Consensus       178 ~~~~r~VLD~GCG~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rg-----l-----i~~~~d~~e~-l~~yp~sFD  245 (334)
                      ..++++||-+|-|.|+.++.+++. ++  ..|+.+|++++.++++.+--     .     +..+.+.+-. +...++.||
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~--~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yD  150 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD  150 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCc--ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCC
Confidence            446789999999999999999885 33  46888888888888876531     0     0111111111 112348899


Q ss_pred             eEEechhhccccCcC-CHHHHHHHHHHhhcCCeEEEEEeCh-----hhHHHHHHHHhcccceEEEecCC--CCCCCCceE
Q 019879          246 LIHAHGLFSLYKDKC-NIEDILLEMDRILRPEGAIIIRDEV-----DEIIKVKKIVGGMRWDTKMVDHE--DGPLVPEKI  317 (334)
Q Consensus       246 lVha~~vfs~~~~~c-~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~~~~~l~W~~~~~~~~--~~~~~~e~~  317 (334)
                      +|+....-..-.... --..+++.+.|+|+|||.++..-..     +.+..+.+.++..=-.+..+..-  .-+.+.-.+
T Consensus       151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f  230 (274)
T d1iy9a_         151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF  230 (274)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred             EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEE
Confidence            998873221111000 1247899999999999999986432     23344444444432333332111  001122357


Q ss_pred             EEEEecc
Q 019879          318 LVAVKQY  324 (334)
Q Consensus       318 l~~~K~~  324 (334)
                      ++|.|.+
T Consensus       231 ~~aS~~~  237 (274)
T d1iy9a_         231 TIGSKKY  237 (274)
T ss_dssp             EEEESSC
T ss_pred             EEEcCCC
Confidence            7777653

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.22  E-value=0.00038  Score=62.75  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=72.9

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChh-----hHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhcc
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKN-----TLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSL  255 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~-----~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~  255 (334)
                      .+|+|+|||.|+++..++++. .++.|.+.++-.+     +....+.-+++.. . --.++-..+ ...|+|+|...-+.
T Consensus        68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~-~-~~~dv~~l~~~~~D~vlcDm~ess  144 (257)
T d2p41a1          68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRL-Q-SGVDVFFIPPERCDTLLCDIGESS  144 (257)
T ss_dssp             EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEE-E-CSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccc-h-hhhhHHhcCCCcCCEEEeeCCCCC
Confidence            579999999999999998764 3456776666311     1000000111110 0 001121233 88999999854331


Q ss_pred             ccCcC-C---HHHHHHHHHHhhcCCeEEEEEe----ChhhHHHHHHHHhcccceE-EEecCCCCCCCCceEEEE
Q 019879          256 YKDKC-N---IEDILLEMDRILRPEGAIIIRD----EVDEIIKVKKIVGGMRWDT-KMVDHEDGPLVPEKILVA  320 (334)
Q Consensus       256 ~~~~c-~---~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~~~~~l~W~~-~~~~~~~~~~~~e~~l~~  320 (334)
                       .++. +   ...+|.=+.+.|+|||.|++--    ..+++++++.+-...+=.. +.+.+-+  ...|.|+++
T Consensus       145 -~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR~P~SRn--st~EmY~Vs  215 (257)
T d2p41a1         145 -PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRN--STHEMYWVS  215 (257)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCT--TCCCEEEET
T ss_pred             -CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEcCCCCcc--ccceeEEee
Confidence             1110 1   1245555668899999998863    3456777666644443222 2332222  246888875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.19  E-value=0.00046  Score=58.30  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             ceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc-h---h-hhhcccCC-CCC-CccceEEec
Q 019879          182 RNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG-I---Y-HDWCEAFS-TYP-RTYDLIHAH  250 (334)
Q Consensus       182 r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~-~---~-~d~~e~l~-~yp-~sFDlVha~  250 (334)
                      .+|||+-||||.++...+.+|+.  .|+-+|.+...+..+.+.    ++.. .   . .+..+.+. ... ..||+|++.
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            58999999999999999999974  699999998888766542    2211 0   1 11111111 122 579999886


Q ss_pred             hhhccccCcCCHHHHHHHHH--HhhcCCeEEEEEe
Q 019879          251 GLFSLYKDKCNIEDILLEMD--RILRPEGAIIIRD  283 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~--RVLRPGG~lii~D  283 (334)
                      ==+.    ....+.+|.-+.  .+|+|+|++++-.
T Consensus       123 PPY~----~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         123 PPFH----FNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hhHh----hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            1111    112344444443  5899999999854

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.93  E-value=0.0018  Score=61.21  Aligned_cols=149  Identities=15%  Similarity=0.069  Sum_probs=85.0

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhC----CC--------cEEEEEeccCChhhHHHHHHc----Cccchh-hhhccc-
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSS----KL--------WVMNVVPTLADKNTLGVIYER----GLIGIY-HDWCEA-  236 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~----~v--------~v~nVv~vD~s~~~L~~a~~R----gli~~~-~d~~e~-  236 (334)
                      .+......+|+|-.||+|+|.....++    ..        .-.++.++|.++.+..++.-.    |..... .-.+++ 
T Consensus       157 ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~  236 (425)
T d2okca1         157 CINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS  236 (425)
T ss_dssp             HHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT
T ss_pred             eccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch
Confidence            445556689999999999998776542    10        012488999998777765432    221110 001122 


Q ss_pred             CCCCC-CccceEEechhhcccc-------------CcCCH-HHHHHHHHHhhcCCeEEEEEeChh------hHHHHHHHH
Q 019879          237 FSTYP-RTYDLIHAHGLFSLYK-------------DKCNI-EDILLEMDRILRPEGAIIIRDEVD------EIIKVKKIV  295 (334)
Q Consensus       237 l~~yp-~sFDlVha~~vfs~~~-------------~~c~~-~~~L~Em~RVLRPGG~lii~D~~~------~~~~i~~~~  295 (334)
                      +...+ ..||+|+++-=|+...             ...+. ..++.-+...|+|||.+.+--+..      .-.++++.+
T Consensus       237 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~L  316 (425)
T d2okca1         237 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRL  316 (425)
T ss_dssp             TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHH
T ss_pred             hhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHH
Confidence            22234 7899999985443210             00111 258888999999999877654432      223455554


Q ss_pred             hcccceEEEecCCCCC----CCCceEEEEEec
Q 019879          296 GGMRWDTKMVDHEDGP----LVPEKILVAVKQ  323 (334)
Q Consensus       296 ~~l~W~~~~~~~~~~~----~~~e~~l~~~K~  323 (334)
                      -.-+.-..+.....+-    ..+--|||.+|+
T Consensus       317 l~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~  348 (425)
T d2okca1         317 LQDFNLHTILRLPTGIFYAQGVKANVLFFSKG  348 (425)
T ss_dssp             HHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             HHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence            4444433333332222    245668888884

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0016  Score=58.87  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccC-CCCCCccceE
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAF-STYPRTYDLI  247 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l-~~yp~sFDlV  247 (334)
                      .+......+||||.||.|+=+.+|++.... ..|+++|.++.-+....++    |+..  ...+..... ...+..||.|
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence            355566789999999999977777663211 3589999988766544332    4321  111100000 1123789999


Q ss_pred             Eec------hhhcccc------CcCCH-------HHHHHHHHHhhcCCeEEEEEe
Q 019879          248 HAH------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       248 ha~------~vfs~~~------~~c~~-------~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .+.      .++..-+      ...++       ..+|....+.|||||.++-++
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            853      3333211      01111       278888899999999999986

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.77  E-value=0.0029  Score=57.88  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc----Cccc--hhhhhcccCCCCCCccceEEe
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER----GLIG--IYHDWCEAFSTYPRTYDLIHA  249 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R----gli~--~~~d~~e~l~~yp~sFDlVha  249 (334)
                      +......+|||+.||.|+=+.+|++.-.--..+++.|.++.-+....++    |...  ..++....++..+..||.|..
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            4455568999999999995555543211112589999998766644332    4322  222212223334588999975


Q ss_pred             c------hhhcccc------CcCCH-------HHHHHHHHHhhcCCeEEEEEeC
Q 019879          250 H------GLFSLYK------DKCNI-------EDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       250 ~------~vfs~~~------~~c~~-------~~~L~Em~RVLRPGG~lii~D~  284 (334)
                      .      .++..-+      ...++       ..+|....+.|||||+++-++-
T Consensus       192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            3      2332111      00111       1688899999999999999863

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.61  E-value=0.00024  Score=63.46  Aligned_cols=88  Identities=13%  Similarity=0.199  Sum_probs=56.6

Q ss_pred             cccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC----ccc
Q 019879          153 ESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG----LIG  228 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg----li~  228 (334)
                      ..|-.|...=.+       ++..+......+||++|||+|.++..|++.+.   .|+++|.++++++.+.++.    .+.
T Consensus         9 QnFL~d~~ii~k-------Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~~~n~~   78 (245)
T d1yuba_           9 QNFLTSEKVLNQ-------IIKQLNLKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVT   78 (245)
T ss_dssp             CCBCCCTTTHHH-------HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEE
T ss_pred             CcccCCHHHHHH-------HHHhcCCCCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhhccchh
Confidence            456666554222       23334445568999999999999999998763   6899999988877665552    122


Q ss_pred             hhhhhcccCCCCC-CccceEEech
Q 019879          229 IYHDWCEAFSTYP-RTYDLIHAHG  251 (334)
Q Consensus       229 ~~~d~~e~l~~yp-~sFDlVha~~  251 (334)
                      ..+..+..+ .++ ..++.|+++.
T Consensus        79 ii~~D~l~~-~~~~~~~~~vv~NL  101 (245)
T d1yuba_          79 LIHQDILQF-QFPNKQRYKIVGNI  101 (245)
T ss_dssp             ECCSCCTTT-TCCCSSEEEEEEEC
T ss_pred             hhhhhhhcc-ccccceeeeEeeee
Confidence            333322222 244 6777787773

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.45  E-value=0.0028  Score=55.75  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             HhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC
Q 019879          173 NRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG  225 (334)
Q Consensus       173 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg  225 (334)
                      +..++-....+||++|||+|.++..|++.+.   .|++++.++++.+...++.
T Consensus        14 v~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~   63 (235)
T d1qama_          14 MTNIRLNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKL   63 (235)
T ss_dssp             HTTCCCCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHT
T ss_pred             HHhcCCCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHh
Confidence            3334445668999999999999999998763   6899999988888877764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.23  E-value=0.0026  Score=54.12  Aligned_cols=101  Identities=17%  Similarity=-0.018  Sum_probs=62.7

Q ss_pred             CCceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhh----hcccC--CCCCCccceEEech
Q 019879          180 RYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHD----WCEAF--STYPRTYDLIHAHG  251 (334)
Q Consensus       180 ~~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d----~~e~l--~~yp~sFDlVha~~  251 (334)
                      ...+||-+|||..+ +++.++. .+.  ..|+.+|.++..++.+.+.|.......    +.+..  .+-+.-+|+++-..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcc--cceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            34799999999855 4555544 354  358888999889999999885322211    11110  01235678776331


Q ss_pred             hh------ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          252 LF------SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       252 vf------s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      -+      ++..........|.++.+++||||.+++.
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            11      11111112357899999999999999886

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.04  E-value=0.0053  Score=54.03  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             HHHHHHHhhcCCCCCceEeeecccccHHHHHHHh----CCCcEEEEEeccCChhhHHHHH-HcCccchhhhhcc---cCC
Q 019879          167 NAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQS----SKLWVMNVVPTLADKNTLGVIY-ERGLIGIYHDWCE---AFS  238 (334)
Q Consensus       167 ~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~----~~v~v~nVv~vD~s~~~L~~a~-~Rgli~~~~d~~e---~l~  238 (334)
                      .-|.+++..++   +.+||.+|++.|+-+..+++    .+. -..|+++|+.+....... ...-+..+...+.   .+.
T Consensus        70 ~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~-~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~  145 (232)
T d2bm8a1          70 AVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFE  145 (232)
T ss_dssp             HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGG
T ss_pred             HHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCC-CceEEecCcChhhhhhhhccccceeeeecccccHHHHH
Confidence            34555555454   57999999999985554432    221 136888888654322111 1111212211111   111


Q ss_pred             CCC-CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeChh
Q 019879          239 TYP-RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDEVD  286 (334)
Q Consensus       239 ~yp-~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~~~  286 (334)
                      .+. ..||+|+-... |+..    ....-.++...|+|||++|+-|...
T Consensus       146 ~l~~~~~dlIfID~~-H~~~----~v~~~~~~~~lLk~GG~iIveD~i~  189 (232)
T d2bm8a1         146 HLREMAHPLIFIDNA-HANT----FNIMKWAVDHLLEEGDYFIIEDMIP  189 (232)
T ss_dssp             GGSSSCSSEEEEESS-CSSH----HHHHHHHHHHTCCTTCEEEECSCHH
T ss_pred             HHHhcCCCEEEEcCC-cchH----HHHHHHHHhcccCcCCEEEEEcCCc
Confidence            223 56888877643 2211    1111125678999999999999753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.021  Score=55.28  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=82.3

Q ss_pred             hcCCCCCceEeeecccccHHHHHHHhC----CC-------------cEEEEEeccCChhhHHHHHHc----Cccc-hhh-
Q 019879          175 LLDSGRYRNIMDMNAGFGGFAAAIQSS----KL-------------WVMNVVPTLADKNTLGVIYER----GLIG-IYH-  231 (334)
Q Consensus       175 ~l~~~~~r~VLD~GCG~G~faa~L~~~----~v-------------~v~nVv~vD~s~~~L~~a~~R----gli~-~~~-  231 (334)
                      .+......+|+|-.||+|+|.....+.    ..             ...++.+.|..+.+..++.-.    |... ..+ 
T Consensus       159 ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~  238 (524)
T d2ar0a1         159 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG  238 (524)
T ss_dssp             HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred             cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccccccc
Confidence            455555679999999999998655431    10             012578999988777665432    2111 111 


Q ss_pred             hhcccCCC-----CC-CccceEEechhhccc----------cCcCCHH-HHHHHHHHhhcCCeEEEEEeChhhH------
Q 019879          232 DWCEAFST-----YP-RTYDLIHAHGLFSLY----------KDKCNIE-DILLEMDRILRPEGAIIIRDEVDEI------  288 (334)
Q Consensus       232 d~~e~l~~-----yp-~sFDlVha~~vfs~~----------~~~c~~~-~~L~Em~RVLRPGG~lii~D~~~~~------  288 (334)
                      +....-.+     .. ..||+|+++-=|..-          ....+.+ .++.-+.+.|+|||.+.+--+...+      
T Consensus       239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~  318 (524)
T d2ar0a1         239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  318 (524)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhh
Confidence            10000011     12 679999998444311          0011122 4788899999999987776543322      


Q ss_pred             HHHHHHHhcccceEEEecCCCCCC----CCceEEEEEec
Q 019879          289 IKVKKIVGGMRWDTKMVDHEDGPL----VPEKILVAVKQ  323 (334)
Q Consensus       289 ~~i~~~~~~l~W~~~~~~~~~~~~----~~e~~l~~~K~  323 (334)
                      .++++.+-.-++-..+.....+-+    .+--|||.+|.
T Consensus       319 ~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~  357 (524)
T d2ar0a1         319 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG  357 (524)
T ss_dssp             HHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEB
T ss_pred             HHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECC
Confidence            345555444444333433333222    45678888774

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.02  E-value=0.012  Score=55.29  Aligned_cols=94  Identities=13%  Similarity=0.056  Sum_probs=62.9

Q ss_pred             CceEeeecccccHHHHHH-HhCCCcEEEEEeccCChhhHHHHHHc----Ccc-----------------chhhhhcccCC
Q 019879          181 YRNIMDMNAGFGGFAAAI-QSSKLWVMNVVPTLADKNTLGVIYER----GLI-----------------GIYHDWCEAFS  238 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L-~~~~v~v~nVv~vD~s~~~L~~a~~R----gli-----------------~~~~d~~e~l~  238 (334)
                      ..+|||+.||+|.++... .+.++  -.|+..|++++.++.+.+.    ++.                 ...+..+..+.
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            468999999999999854 44554  3699999999999887653    110                 00000000011


Q ss_pred             -CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          239 -TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       239 -~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                       .-...||+|...- |.      ....+|.-..|-+|.||+|.++-
T Consensus       124 ~~~~~~fDvIDiDP-fG------s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         124 AERHRYFHFIDLDP-FG------SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHSTTCEEEEEECC-SS------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhcCcCCcccCCC-CC------CcHHHHHHHHHHhccCCEEEEEe
Confidence             1125799998762 22      24578888889999999999984

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.049  Score=44.26  Aligned_cols=102  Identities=16%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             HHHHHHhhcCCCCCceEeeecc--cccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccC--C
Q 019879          168 AYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAF--S  238 (334)
Q Consensus       168 ~y~~ll~~l~~~~~r~VLD~GC--G~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l--~  238 (334)
                      .|..+....+-.+..+||-.||  |.|.++..+++ .|.   +|+.++.+++.++.+.+.|...++  .  ++.+.+  .
T Consensus        16 A~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~   92 (174)
T d1yb5a2          16 AYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL---KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKY   92 (174)
T ss_dssp             HHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc---ccccccccccccccccccCcccccccccccHHHHhhhh
Confidence            4444433222234578999997  45556666655 454   467777777788888887753221  1  111111  1


Q ss_pred             CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       239 ~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +-++.||+|+..          .-...+.+..++|||||.++..
T Consensus        93 t~~~g~d~v~d~----------~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          93 VGEKGIDIIIEM----------LANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HCTTCEEEEEES----------CHHHHHHHHHHHEEEEEEEEEC
T ss_pred             hccCCceEEeec----------ccHHHHHHHHhccCCCCEEEEE
Confidence            223779999764          1135778888999999999985

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.93  E-value=0.027  Score=45.45  Aligned_cols=92  Identities=17%  Similarity=0.060  Sum_probs=59.2

Q ss_pred             CCceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh-h--------hcccC-CCCCCccceE
Q 019879          180 RYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH-D--------WCEAF-STYPRTYDLI  247 (334)
Q Consensus       180 ~~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-d--------~~e~l-~~yp~sFDlV  247 (334)
                      ...+||=+|||.-+ +++.++. .|   .+|+.+|.+++-++.+++.|....+. +        ..+.+ ..+++.+|+|
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~G---a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhc---ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            34789999999544 4554544 45   36889999988999998877422110 0        00111 1234568888


Q ss_pred             EechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          248 HAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       248 ha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +-.         ..-...+....++|||||.+++.-
T Consensus       103 id~---------~g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         103 IDC---------SGNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             EEC---------SCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             eec---------CCChHHHHHHHHHHhcCCceEEEe
Confidence            542         112467888899999999999863

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.058  Score=48.34  Aligned_cols=119  Identities=13%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhC--CCcEEEEEeccCChhhHHHHHHc----Ccc--chhhhhcccCCCC-C--Ccc
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSS--KLWVMNVVPTLADKNTLGVIYER----GLI--GIYHDWCEAFSTY-P--RTY  244 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~--~v~v~nVv~vD~s~~~L~~a~~R----gli--~~~~d~~e~l~~y-p--~sF  244 (334)
                      +......+|||+.||.|+=+.+|++.  +.  ..|+++|.+..-+..+.++    |+.  ...+.....+.+. +  ..|
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~--~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCC--ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence            34455678999999999976666542  11  2489999997766654432    432  1222111222222 2  679


Q ss_pred             ceEEec------hhhcccc--------CcCCHH-------HHHHHHHHhhcCCeEEEEEeC----hhhHHHHHHHHhc
Q 019879          245 DLIHAH------GLFSLYK--------DKCNIE-------DILLEMDRILRPEGAIIIRDE----VDEIIKVKKIVGG  297 (334)
Q Consensus       245 DlVha~------~vfs~~~--------~~c~~~-------~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~~~~~  297 (334)
                      |.|.+.      .++...+        ....+.       .+|.... .|+|||.|+-++-    .+.-+-|+.+++.
T Consensus       168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~  244 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQ  244 (293)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred             eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHh
Confidence            999864      2322111        001111       2333333 4799999988863    2233345555544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.011  Score=48.26  Aligned_cols=94  Identities=13%  Similarity=0.038  Sum_probs=57.0

Q ss_pred             CCceEeeeccc-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--hhhcccCCCCCCccceEEechhhcc
Q 019879          180 RYRNIMDMNAG-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--HDWCEAFSTYPRTYDLIHAHGLFSL  255 (334)
Q Consensus       180 ~~r~VLD~GCG-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~d~~e~l~~yp~sFDlVha~~vfs~  255 (334)
                      ...+||-+||| .|.++..+++ .|+   +|+.+|.+++.++.+++-|....+  .+..+......+.||+|+....-.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc---cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence            34789999998 4445555554 353   577888888889998887753222  1111111123478998764210000


Q ss_pred             ccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          256 YKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       256 ~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                             ...+....++|||||.+++--
T Consensus       104 -------~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         104 -------DIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -------TCCTTTGGGGEEEEEEEEECC
T ss_pred             -------cchHHHHHHHhhccceEEEec
Confidence                   012446789999999998863

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.024  Score=51.00  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc--C--ccchhhhhcccCCCCC-CccceEEec
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER--G--LIGIYHDWCEAFSTYP-RTYDLIHAH  250 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R--g--li~~~~d~~e~l~~yp-~sFDlVha~  250 (334)
                      ++.....+||++|+|+|.++..|++++.   .|++++.++++++...++  +  ......-...++..++ ..++.|+++
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~~vV~N   93 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVAN   93 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEE
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhhhhhcc
Confidence            3444457999999999999999998764   588999998887766554  1  1111111123344444 556788887

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=94.57  E-value=0.031  Score=52.09  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=58.6

Q ss_pred             CceEeeecccccHHHH--------HHHh-------CCCcEEEEEeccCChhhHHHHHHcCccc-------hhh-hhcccC
Q 019879          181 YRNIMDMNAGFGGFAA--------AIQS-------SKLWVMNVVPTLADKNTLGVIYERGLIG-------IYH-DWCEAF  237 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa--------~L~~-------~~v~v~nVv~vD~s~~~L~~a~~Rgli~-------~~~-d~~e~l  237 (334)
                      .-+|.|+||..|..+.        ++.+       ...-...|.-.|.+.+-....+.. |..       .+. .....|
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~-L~~~~~~~~~~f~~gvpGSF  130 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRS-LPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTT-TTTSCSCTTCEEEEEEESCS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHh-ccccccCCCCeEEEecCCch
Confidence            3679999999998552        2221       122346777777776654444432 100       000 000111


Q ss_pred             --CCCC-CccceEEechhhccccCc-C-----------------------------CHHHHHHHHHHhhcCCeEEEEE
Q 019879          238 --STYP-RTYDLIHAHGLFSLYKDK-C-----------------------------NIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       238 --~~yp-~sFDlVha~~vfs~~~~~-c-----------------------------~~~~~L~Em~RVLRPGG~lii~  282 (334)
                        --|| +|.|++||+..+|.+.+. +                             |+..+|+==.+-|+|||.+++.
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence              1267 999999999988876320 0                             2223555555667999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.025  Score=45.98  Aligned_cols=93  Identities=14%  Similarity=0.030  Sum_probs=61.3

Q ss_pred             CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-------C-CCCCCccceEEe
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-------F-STYPRTYDLIHA  249 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-------l-~~yp~sFDlVha  249 (334)
                      ...+||=+|||..++.+.+..  .+.  .+|+.+|.++.-++.+.+-|....+..-.++       + .+++..||+|+-
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~--~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCC--ceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            346899999998776554433  354  3789999999999999887752221100000       0 123457888865


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      .         ..-+..+......|||||.+++.-
T Consensus       104 ~---------~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         104 C---------TGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             C---------SCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             c---------cCCchhHHHHHHHhcCCCEEEEEe
Confidence            3         112567888999999999999863

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.02  Score=50.68  Aligned_cols=47  Identities=4%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             cCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcC
Q 019879          176 LDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERG  225 (334)
Q Consensus       176 l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rg  225 (334)
                      +.......||.+|||+|.++..|++++.   +|+++++++.+++...++.
T Consensus        17 ~~~~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_          17 INPQKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHh
Confidence            4444568999999999999999999864   5899999988888776653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.11  E-value=0.017  Score=47.40  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=63.0

Q ss_pred             HHHHHhhcCCCCCceEeeecccccHHHHH-HHh-CCCcEEEEEeccCChhhHHHHHHcCccchh----hhhcccCC-CCC
Q 019879          169 YKKINRLLDSGRYRNIMDMNAGFGGFAAA-IQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY----HDWCEAFS-TYP  241 (334)
Q Consensus       169 y~~ll~~l~~~~~r~VLD~GCG~G~faa~-L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~----~d~~e~l~-~yp  241 (334)
                      |..++...+.....+||=+|||.-++++. +++ .+..  .|+.+|.+++-++.+.+.|....+    .++.+.+. ..+
T Consensus        17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~   94 (174)
T d1f8fa2          17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITD   94 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccc--eeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcC
Confidence            43333333334457899899987665443 333 3543  467778888889998888753222    11112111 123


Q ss_pred             CccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          242 RTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       242 ~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +.||+|+-.         ..-+..+.+..++|||+|.+++.
T Consensus        95 gg~D~vid~---------~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          95 GGVNFALES---------TGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             SCEEEEEEC---------SCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEEc---------CCcHHHHHHHHhcccCceEEEEE
Confidence            678988532         11256888999999999999885

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.99  E-value=0.016  Score=49.28  Aligned_cols=40  Identities=8%  Similarity=-0.076  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhhcCCeEEEEEeChhhHHHHHHHHhcccce
Q 019879          262 IEDILLEMDRILRPEGAIIIRDEVDEIIKVKKIVGGMRWD  301 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~~~~~l~W~  301 (334)
                      +..++.|+.|+|+|||.+++.........+...+....|.
T Consensus        53 ~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~   92 (256)
T d1g60a_          53 TYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMI   92 (256)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccce
Confidence            4478999999999999988776555444554544444454

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.40  E-value=0.24  Score=42.80  Aligned_cols=135  Identities=12%  Similarity=0.099  Sum_probs=72.9

Q ss_pred             eEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-CccchhhhhcccCCCCC-CccceEEec---hhhcccc
Q 019879          183 NIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFSTYP-RTYDLIHAH---GLFSLYK  257 (334)
Q Consensus       183 ~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli~~~~d~~e~l~~yp-~sFDlVha~---~vfs~~~  257 (334)
                      +|||+=||.|+|...|.+.|+.+  +.++|..+...+..... +-.....|. ..+..-. ...|+++++   .-||...
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~--~~a~e~d~~a~~~~~~N~~~~~~~~Di-~~~~~~~~~~~dll~~g~PCq~fS~ag   78 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRI--ICANEYDKSIWKTYESNHSAKLIKGDI-SKISSDEFPKCDGIIGGPPCQSWSEGG   78 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEE--EEEEECCHHHHHHHHHHCCSEEEESCT-TTSCGGGSCCCSEEEECCCCTTTSSSS
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEE--EEEEeCCHHHHHHHHHHCCCCCccCCh-hhCCHhHcccccEEeeccccccccccc
Confidence            69999999999999998888654  67888887666543322 211112222 2222222 468999876   2344221


Q ss_pred             ---CcCCHH-HH---HHHHHHhhcCCeEEEEEeCh---------h----hHHHHHHHHhcccceEEEecCCCCCCCCceE
Q 019879          258 ---DKCNIE-DI---LLEMDRILRPEGAIIIRDEV---------D----EIIKVKKIVGGMRWDTKMVDHEDGPLVPEKI  317 (334)
Q Consensus       258 ---~~c~~~-~~---L~Em~RVLRPGG~lii~D~~---------~----~~~~i~~~~~~l~W~~~~~~~~~~~~~~e~~  317 (334)
                         ...+.. .+   +.++-..+||-  +++-+++         .    ++..+..+-..+.|.+-....-..|+.++++
T Consensus        79 ~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~  156 (324)
T d1dcta_          79 SLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRV  156 (324)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEE
T ss_pred             ccccccccccchHHHHHHHHHhhCCc--eeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhcee
Confidence               112222 33   34455567894  3443332         1    2233333344666665433333457778886


Q ss_pred             E-EEEe
Q 019879          318 L-VAVK  322 (334)
Q Consensus       318 l-~~~K  322 (334)
                      . |+.+
T Consensus       157 fiv~~r  162 (324)
T d1dcta_         157 FYIGFR  162 (324)
T ss_dssp             EEEEEE
T ss_pred             eEeeec
Confidence            5 4443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.25  E-value=0.12  Score=41.29  Aligned_cols=100  Identities=14%  Similarity=0.034  Sum_probs=64.5

Q ss_pred             Eeeeccc--ccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCCCccceEEechhhccccCcCC
Q 019879          184 IMDMNAG--FGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHAHGLFSLYKDKCN  261 (334)
Q Consensus       184 VLD~GCG--~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp~sFDlVha~~vfs~~~~~c~  261 (334)
                      |.=+|+|  -+.+|..|.+++.   +|++.|.+++.++.+.++|++....+..+.+    ...|+|+-.     .+ ...
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIila-----vp-~~~   69 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLC-----TP-IQL   69 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEEC-----SC-HHH
T ss_pred             EEEEeecHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHhhccceeeeecccc----ccccccccc-----Cc-Hhh
Confidence            4456777  3347788888874   6889999988999999988754332222222    567988753     12 234


Q ss_pred             HHHHHHHHHHhhcCCeEEEEEeCh--hhHHHHHHHHh
Q 019879          262 IEDILLEMDRILRPEGAIIIRDEV--DEIIKVKKIVG  296 (334)
Q Consensus       262 ~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~~~~  296 (334)
                      ++.++.|+...|+|+-+++-....  .....++++..
T Consensus        70 ~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~  106 (165)
T d2f1ka2          70 ILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS  106 (165)
T ss_dssp             HHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST
T ss_pred             hhhhhhhhhhhcccccceeeccccchHHHHHHHHhhc
Confidence            678999999888888866544322  23444555443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.063  Score=43.89  Aligned_cols=92  Identities=24%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh-------hhcccCC--CCCCccceEE
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH-------DWCEAFS--TYPRTYDLIH  248 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~-------d~~e~l~--~yp~sFDlVh  248 (334)
                      ...+||-+|||. |.++..++. .|+  .+|+.+|.+++.++.+.+-|....+.       ++.+.+.  +.++.||+|+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGA--ENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB--SEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCccchhheeccccccc--ccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            458999999984 556666655 353  36899999999999998877421110       1111111  2236699986


Q ss_pred             echhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          249 AHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       249 a~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      -..     -    -...+.+..+.|||||.+++-
T Consensus       106 d~v-----G----~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         106 EAT-----G----DSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             ECS-----S----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             ecC-----C----chhHHHHHHHHhcCCCEEEEE
Confidence            431     1    134677888999999998875

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.76  E-value=0.78  Score=39.89  Aligned_cols=138  Identities=16%  Similarity=0.146  Sum_probs=76.3

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEec---hhhccc
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAH---GLFSLY  256 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~---~vfs~~  256 (334)
                      .-+|||+=||.|++...|.+.|+.+  |.++|..+..++..... .....+.....+..-. ..+|+++++   .-||..
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG~~~--v~a~e~d~~a~~~~~~N-~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~a   87 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCGAEC--VYSNEWDKYAQEVYEMN-FGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSIS   87 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEE--EEEECCCHHHHHHHHHH-HSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred             CCeEEEECccccHHHHHHHHCCCeE--EEEEeCCHHHHHHHHHH-CCCCCcCchhcCchhhcceeeeeecccccchhhhh
Confidence            4689999999999999999988654  67889987766654332 1111121122222222 568999876   234421


Q ss_pred             -------cCcCCHHHHHHHHHHhhcCCeEEEEEeCh---------hhHHH----HHHHHhcccceEEEecCCCCCCCCce
Q 019879          257 -------KDKCNIEDILLEMDRILRPEGAIIIRDEV---------DEIIK----VKKIVGGMRWDTKMVDHEDGPLVPEK  316 (334)
Q Consensus       257 -------~~~c~~~~~L~Em~RVLRPGG~lii~D~~---------~~~~~----i~~~~~~l~W~~~~~~~~~~~~~~e~  316 (334)
                             ..+..+-..+.++-+.+||.  +++-+++         ..++.    ++++-..+.|.+-..-.-..|+.+++
T Consensus        88 g~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R  165 (327)
T d2c7pa1          88 GKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRER  165 (327)
T ss_dssp             SCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEE
T ss_pred             hhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhh
Confidence                   12223444555566668895  3333322         23333    33333345555433222334677777


Q ss_pred             E-EEEEec
Q 019879          317 I-LVAVKQ  323 (334)
Q Consensus       317 ~-l~~~K~  323 (334)
                      + +++.|+
T Consensus       166 ~fivg~r~  173 (327)
T d2c7pa1         166 IYMICFRN  173 (327)
T ss_dssp             EEEEEEBG
T ss_pred             heeeeecc
Confidence            4 566654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.56  E-value=0.033  Score=47.78  Aligned_cols=43  Identities=19%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             CCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          179 GRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       179 ~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      .....|||.=||+|+.+.+-.+.+   .+.+++|+++....+|.+|
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~R  248 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQ  248 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHH
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHH
Confidence            345789999999998776665544   4689999999999998887

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.22  E-value=0.49  Score=38.55  Aligned_cols=92  Identities=8%  Similarity=-0.103  Sum_probs=59.7

Q ss_pred             CCceEeeecccccH-HHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-C------CCCCCccceEEec
Q 019879          180 RYRNIMDMNAGFGG-FAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-F------STYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~-faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l------~~yp~sFDlVha~  250 (334)
                      ...+||=+|||.-+ +++.+++ .+.  ..|+.+|.++.-++.+++-|...++..--++ .      .+.++-+|+|+=.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC--ceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            44789999999844 5555544 343  3588889998899999988853322110000 0      0123567887432


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                               ..-+..+.+..+.|||| |.+++-
T Consensus       106 ---------~G~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         106 ---------AGTAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             ---------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             ---------cccchHHHHHHHHhhcCCeEEEec
Confidence                     12357899999999996 998885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.20  E-value=0.14  Score=41.13  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             CCCceEeeecc-c-ccHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccC--CCCCCccceEEe
Q 019879          179 GRYRNIMDMNA-G-FGGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAF--STYPRTYDLIHA  249 (334)
Q Consensus       179 ~~~r~VLD~GC-G-~G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l--~~yp~sFDlVha  249 (334)
                      ....+||=+|| | .|.++..++. .+.  ..|+.++.+++.++.+.+-|....+  .  +..+..  .+.+..||+|+.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid  103 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID  103 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence            34578999997 4 3444444444 343  3588888888888888887742111  0  111111  134567998865


Q ss_pred             chhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          250 HGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       250 ~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      ..         .-...+....+.|||||.+++.
T Consensus       104 ~~---------g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         104 LN---------NSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SC---------CCHHHHTTGGGGEEEEEEEEEC
T ss_pred             cc---------ccchHHHhhhhhcccCCEEEEe
Confidence            31         1246778889999999999886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.12  E-value=0.13  Score=41.46  Aligned_cols=91  Identities=13%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             CceEeeecccccHHHH-HHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc----C-CCCCCccceEEechhh
Q 019879          181 YRNIMDMNAGFGGFAA-AIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA----F-STYPRTYDLIHAHGLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa-~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~----l-~~yp~sFDlVha~~vf  253 (334)
                      ..+||=.|||..+..+ .++. .+.  ..|+.+|.+++-++.+++-|....+..-.+.    + .+-++-+|+|+-.   
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~---  107 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDF---  107 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEES---
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEe---
Confidence            4789999999877654 4433 343  3578888888888888877643222110010    0 1223568888643   


Q ss_pred             ccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          254 SLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       254 s~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                            ..-...+....+.|||||.+++.
T Consensus       108 ------~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         108 ------VGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             ------SCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             ------cCcchHHHHHHHHHhCCCEEEEE
Confidence                  11245788899999999999985

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.53  Score=40.94  Aligned_cols=137  Identities=13%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             CceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc-CccchhhhhcccCC--CCC-CccceEEec---hhh
Q 019879          181 YRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER-GLIGIYHDWCEAFS--TYP-RTYDLIHAH---GLF  253 (334)
Q Consensus       181 ~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R-gli~~~~d~~e~l~--~yp-~sFDlVha~---~vf  253 (334)
                      +-+|+|+=||.|+|...|...|+..--|.++|+.+...+.-... +-...+.+..+.+.  .++ ..+|+++++   .-|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f   81 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence            35799999999999999987775333367888887666653322 11111211122221  123 368999876   234


Q ss_pred             ccccCc---CC-HHHHHHHHHHhh-----cCCeEEEEEeChh------hHHHHHHHHhcc----cceEEEecCCCCCCCC
Q 019879          254 SLYKDK---CN-IEDILLEMDRIL-----RPEGAIIIRDEVD------EIIKVKKIVGGM----RWDTKMVDHEDGPLVP  314 (334)
Q Consensus       254 s~~~~~---c~-~~~~L~Em~RVL-----RPGG~lii~D~~~------~~~~i~~~~~~l----~W~~~~~~~~~~~~~~  314 (334)
                      |..-..   .+ ...++.|+.|++     ||-  +++-+++.      ..+.|.+.+..+    .|.+-....-.-|+.+
T Consensus        82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R  159 (343)
T d1g55a_          82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSR  159 (343)
T ss_dssp             --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCC
T ss_pred             cccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccc
Confidence            422111   11 124667777775     574  44444431      223333333444    4443322222246677


Q ss_pred             ceEEE
Q 019879          315 EKILV  319 (334)
Q Consensus       315 e~~l~  319 (334)
                      +++.+
T Consensus       160 ~Rvfi  164 (343)
T d1g55a_         160 LRYFL  164 (343)
T ss_dssp             CEEEE
T ss_pred             eeEEE
Confidence            77644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.01  E-value=0.53  Score=38.27  Aligned_cols=92  Identities=5%  Similarity=-0.022  Sum_probs=55.9

Q ss_pred             CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC-------CCCCCccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-------STYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l-------~~yp~sFDlVha~  250 (334)
                      ...+|+=+|||..++.+....  .+.  .+|+.+|.+++.++.+++.|-..++..--++.       .+.++-+|+|+-.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~--~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGA--SRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC--ceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            457899999997775544433  343  47999999999999999998643322100110       1234668876432


Q ss_pred             hhhccccCcCCHHHHHHHH-HHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEM-DRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em-~RVLRPGG~lii~  282 (334)
                               ......+.+. ..++|++|.+++.
T Consensus       107 ---------~g~~~~~~~a~~~~~~~~G~~v~v  130 (176)
T d1d1ta2         107 ---------IGHLETMIDALASCHMNYGTSVVV  130 (176)
T ss_dssp             ---------SCCHHHHHHHHTTSCTTTCEEEEC
T ss_pred             ---------CCchHHHHHHHHHhhcCCeEEEEE
Confidence                     1123444444 4455666888875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.89  E-value=0.15  Score=41.07  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             CCceEeeecccc-cHHHHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccc
Q 019879          180 RYRNIMDMNAGF-GGFAAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLY  256 (334)
Q Consensus       180 ~~r~VLD~GCG~-G~faa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~  256 (334)
                      ...+||=+|||. |.++..+++ .|.   .++.+|.+++.++.+.+-|....+....+...... +.||+++-..     
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~-----  101 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV-----  101 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC-----
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc---cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee-----
Confidence            347888899875 345555555 454   45567777778888888775322211111111112 6799886431     


Q ss_pred             cCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          257 KDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       257 ~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      ..    ...+....++|+|||.+++.-
T Consensus       102 g~----~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2         102 AA----PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             SS----CCCHHHHHTTEEEEEEEEECC
T ss_pred             ec----chhHHHHHHHHhcCCEEEEec
Confidence            11    124556678999999999863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.82  E-value=0.28  Score=39.06  Aligned_cols=104  Identities=15%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             eEeeecccc-cH-HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccCCCCC-CccceEEechhhccccCc
Q 019879          183 NIMDMNAGF-GG-FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAFSTYP-RTYDLIHAHGLFSLYKDK  259 (334)
Q Consensus       183 ~VLD~GCG~-G~-faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l~~yp-~sFDlVha~~vfs~~~~~  259 (334)
                      +|+=+|||. |+ +|..|.+.+. ...|++.|.+++.++.+.+.|.+.....   ...... ...|+|+..      ...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~dlIila------~p~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTT---SIAKVEDFSPDFVMLS------SPV   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEES---CGGGGGGTCCSEEEEC------SCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhh---hhhhhhcccccccccc------CCc
Confidence            577789986 43 6778877763 2469999999999999999887543211   111112 467888654      112


Q ss_pred             CCHHHHHHHHHHhhcCCeEEEEEeC--hhhHHHHHHHHh
Q 019879          260 CNIEDILLEMDRILRPEGAIIIRDE--VDEIIKVKKIVG  296 (334)
Q Consensus       260 c~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~~~~  296 (334)
                      .....++.++...++++-.++-.-.  ....+.+++...
T Consensus        73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            2466889999999998765543332  235556665543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.80  E-value=0.25  Score=40.31  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=58.4

Q ss_pred             CceEeeecccc-cHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccchh--h--hhcccC--CCCCCccceEEechh
Q 019879          181 YRNIMDMNAGF-GGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGIY--H--DWCEAF--STYPRTYDLIHAHGL  252 (334)
Q Consensus       181 ~r~VLD~GCG~-G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~~--~--d~~e~l--~~yp~sFDlVha~~v  252 (334)
                      ..+||=+|||. |.++..+++. +.  -.|+.+|.+++-++.+.+-|...++  .  ++.+.+  .+-..-||+|+-.  
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga--~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~--  103 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGA--GRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA--  103 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC--SCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC--
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccc--cccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc--
Confidence            46788899987 5566666653 43  2588999998888988887753221  1  111111  1222569988543  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                         ..    -...+.+..++|||||.+++.
T Consensus       104 ---~g----~~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         104 ---GG----GSETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             ---SS----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             ---cC----CHHHHHHHHHHHhcCCEEEEE
Confidence               11    124667778999999999985

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.57  E-value=0.048  Score=46.71  Aligned_cols=46  Identities=26%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             CCCCC-CccceEEech----hhccccC----cCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          237 FSTYP-RTYDLIHAHG----LFSLYKD----KCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       237 l~~yp-~sFDlVha~~----vfs~~~~----~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +..+| +|+|+|+++-    .+.....    ...+...+.|+.|+|||||.+++.
T Consensus        16 l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_          16 LAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             HHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            34556 8888888762    1111110    112568899999999999999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.07  E-value=0.68  Score=37.43  Aligned_cols=92  Identities=10%  Similarity=0.002  Sum_probs=56.7

Q ss_pred             CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC-------CCCCCccceEEec
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-------STYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l-------~~yp~sFDlVha~  250 (334)
                      ...+||=+|||..++.+....  .+.  ..|+.+|.++.-++.+.+-|....+..-.++.       .+-++-+|+|+-.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC--ceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            447899999998776655433  343  46899999989999999988533221100110       1123457777542


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcC-CeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRP-EGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRP-GG~lii~  282 (334)
                               ..-...+.+..+.|++ +|.+++-
T Consensus       105 ---------~g~~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2         105 ---------AGRIETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             ---------SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             ---------CCCchHHHHHHHHHHHhcCceEEE
Confidence                     1124566666666655 5888874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.88  E-value=0.37  Score=38.02  Aligned_cols=90  Identities=16%  Similarity=0.036  Sum_probs=56.9

Q ss_pred             CCceEeeecccccHHHHHHHh--CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCCC-CCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQS--SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFSTY-PRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~--~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~y-p~sFDlVha~~v  252 (334)
                      ...+||=.|||.-++++....  .+.   .|+.++.+++-++.+++-|......    +..+.+... ++.+|+|.+.. 
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  102 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-  102 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC---eEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence            347888899998876554433  343   5788888888899888877532211    111111111 24455554431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                               -...+....+.|||||.+++.
T Consensus       103 ---------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         103 ---------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             ---------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             ---------CHHHHHHHHHHhccCCceEec
Confidence                     146788999999999999985

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.45  E-value=0.2  Score=39.89  Aligned_cols=90  Identities=14%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             CCceEeeecccccHHHH-HHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhh----hhcccCCC-CCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAA-AIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYH----DWCEAFST-YPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa-~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~----d~~e~l~~-yp~sFDlVha~~v  252 (334)
                      ...+||=+|||.=++++ .+++ .|   .+|+.+|.+++.++.+++-|....+.    +..+.+.. ..+.+|.|.+.. 
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G---~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~-  102 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMG---LHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV-  102 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcC---CccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence            35688889998766443 3333 34   46889999988999988877532221    11111100 123344554431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                               -...+....+.|||||.+++-
T Consensus       103 ---------~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         103 ---------SNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             ---------CHHHHHHHHTTEEEEEEEEEC
T ss_pred             ---------cchHHHHHHHHhcCCcEEEEE
Confidence                     135778888999999999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.38  E-value=1.6  Score=34.64  Aligned_cols=94  Identities=10%  Similarity=-0.024  Sum_probs=56.9

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc-C------CCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA-F------STYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~-l------~~yp~sFDlVha~~v  252 (334)
                      ...+||=+|||.++..+...-+......|+.+|.+++-++.+.+.|....+...-++ .      .+-++-+|+|+-.. 
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~-  106 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI-  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS-
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC-
Confidence            347899999987664444333222234789999998999999998864332211110 0      12336689886431 


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCC-eEEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPE-GAIIIR  282 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPG-G~lii~  282 (334)
                              .....+....+.+++| |.+++.
T Consensus       107 --------G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         107 --------GRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             --------CCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             --------CchhHHHHHHHHHhcCCcceEEe
Confidence                    1245666777888886 566554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.38  E-value=1.4  Score=34.91  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             HHHHHHhhcCCCCCceEeeecc--cccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccch--hhh--hcccC--C
Q 019879          168 AYKKINRLLDSGRYRNIMDMNA--GFGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGI--YHD--WCEAF--S  238 (334)
Q Consensus       168 ~y~~ll~~l~~~~~r~VLD~GC--G~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~--~~d--~~e~l--~  238 (334)
                      .|..+.....-.+..+||=.|+  |.|.++..|+.. +.   .|+.++.+++.++.+.+.|....  +++  +.+.+  .
T Consensus        13 A~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~   89 (183)
T d1pqwa_          13 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILEL   89 (183)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc---cceeeecccccccccccccccccccCCccCHHHHHHHH
Confidence            4444433222233468887663  445566666653 54   45555556677888887774222  111  11111  1


Q ss_pred             CCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          239 TYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       239 ~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                      +-++-||+|+...     .     ...+.+..++|||+|.++..
T Consensus        90 t~~~g~d~v~d~~-----g-----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          90 TDGYGVDVVLNSL-----A-----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTTCCEEEEEECC-----C-----THHHHHHHHTEEEEEEEEEC
T ss_pred             hCCCCEEEEEecc-----c-----chHHHHHHHHhcCCCEEEEE
Confidence            2236799998641     1     24677888999999999985

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=0.86  Score=36.24  Aligned_cols=116  Identities=12%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             cchhhhhhHHHHHHHHHHHhhcCCCCCceEeeeccc--ccHHHHHHHhC-CCcEEEEEeccCChhhHHHHHHcCccch--
Q 019879          155 YQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAG--FGGFAAAIQSS-KLWVMNVVPTLADKNTLGVIYERGLIGI--  229 (334)
Q Consensus       155 f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG--~G~faa~L~~~-~v~v~nVv~vD~s~~~L~~a~~Rgli~~--  229 (334)
                      |++.....-..+-.|..+....+-....+||=.|+|  .|.++..|++. |   .+|+.++.+++.++.+++.|-...  
T Consensus         3 fe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G---a~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           3 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC---CeEeecccchHHHHHHHhcCCeEEEE
Confidence            444444444444456544432122234688887665  45566677653 4   468888888888888888774221  


Q ss_pred             h--hhhcccC--CCCCCccceEEechhhccccCcCCHHHHHHHHHHhhcCCeEEEEEe
Q 019879          230 Y--HDWCEAF--STYPRTYDLIHAHGLFSLYKDKCNIEDILLEMDRILRPEGAIIIRD  283 (334)
Q Consensus       230 ~--~d~~e~l--~~yp~sFDlVha~~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D  283 (334)
                      +  .++.+.+  .+-++-+|+|+...     .     ...+....+.|+|+|.+++.-
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~-----g-----~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSV-----G-----RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECS-----C-----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCc-----c-----HHHHHHHHHHHhcCCeeeecc
Confidence            1  2233322  12347789886541     1     135678889999999987753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.11  E-value=1.7  Score=34.17  Aligned_cols=92  Identities=7%  Similarity=-0.085  Sum_probs=56.3

Q ss_pred             CCceEeeecccccHH-HHHHHh-CCCcEEEEEeccCChhhHHHHHHcCccchhhh-----hccc--CCCCCCccceEEec
Q 019879          180 RYRNIMDMNAGFGGF-AAAIQS-SKLWVMNVVPTLADKNTLGVIYERGLIGIYHD-----WCEA--FSTYPRTYDLIHAH  250 (334)
Q Consensus       180 ~~r~VLD~GCG~G~f-aa~L~~-~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d-----~~e~--l~~yp~sFDlVha~  250 (334)
                      ...+||=.|||..+. +..++. .+.  ..|+.+|.++..++.+++-|....+..     +.+.  ..+.++-+|+|+-.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~--~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGA--SRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhc--CceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            347888889885443 333433 243  357888888888998888775332211     0000  01234668888643


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEE
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIR  282 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~  282 (334)
                           .    .-..++.....++++||.+++-
T Consensus       106 -----~----G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2         106 -----I----GNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             -----S----CCHHHHHHHHHTBCTTTCEEEE
T ss_pred             -----C----CCHHHHHHHHHhhcCCceeEEE
Confidence                 1    1246788899999999876654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=82.24  E-value=1  Score=39.41  Aligned_cols=101  Identities=12%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             cccchhhhhhHHHHHH--HHHHHh--hcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhH---HHHHHcC
Q 019879          153 ESYQEDSNKWKKHVNA--YKKINR--LLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTL---GVIYERG  225 (334)
Q Consensus       153 e~f~~d~~~W~~~v~~--y~~ll~--~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L---~~a~~Rg  225 (334)
                      -+|......|+..-..  -..+..  .++.+...+|||+=||.|..+..|+..|.   .|+.++-++-+.   +-+.+|.
T Consensus        57 vdF~~g~~~~R~~~~~~~~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~  133 (250)
T d2oyra1          57 VDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARG  133 (250)
T ss_dssp             CCSSSHHHHHHHHHSCGGGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHhhhccCcchhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHH
Confidence            3576666666654321  111222  23444445899999999999999988774   589999886432   2222221


Q ss_pred             c------------cchhh-hhcccCCCCCCccceEEechhhccc
Q 019879          226 L------------IGIYH-DWCEAFSTYPRTYDLIHAHGLFSLY  256 (334)
Q Consensus       226 l------------i~~~~-d~~e~l~~yp~sFDlVha~~vfs~~  256 (334)
                      .            +..++ |-.+-+..+...||+|+..-+|.+-
T Consensus       134 ~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         134 YADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred             HhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCccc
Confidence            0            11111 1122233445789999999888754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.61  E-value=2.2  Score=33.57  Aligned_cols=93  Identities=8%  Similarity=-0.036  Sum_probs=53.8

Q ss_pred             CCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhcccC-------CCCCCccceEEechh
Q 019879          180 RYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEAF-------STYPRTYDLIHAHGL  252 (334)
Q Consensus       180 ~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~l-------~~yp~sFDlVha~~v  252 (334)
                      ...+||=+|||.++..+....+..-..+|+.+|.+++-++.+.+-|....+..-.++.       .+-++-+|+|+-.  
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~--  105 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC--  105 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC--
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee--
Confidence            3478999999997755444332122246899999988999999988532221100110       0112457877532  


Q ss_pred             hccccCcCCHHHHHHHHHHhhcCC-eEEEE
Q 019879          253 FSLYKDKCNIEDILLEMDRILRPE-GAIII  281 (334)
Q Consensus       253 fs~~~~~c~~~~~L~Em~RVLRPG-G~lii  281 (334)
                             .--...+......+++| |.+++
T Consensus       106 -------~G~~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2         106 -------VGNVGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             -------SCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             -------cCCHHHHHHHHHHhhCCCcceeE
Confidence                   11245666667776666 44444

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=81.05  E-value=0.1  Score=45.55  Aligned_cols=19  Identities=37%  Similarity=0.807  Sum_probs=17.1

Q ss_pred             eEeecccccCCceEEEecC
Q 019879           15 MIEVDRVLRPGGYWVLSGP   33 (334)
Q Consensus        15 l~E~dR~LrpgGy~v~s~p   33 (334)
                      +-|+.|||||||+++.+.|
T Consensus       160 ~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEee
Confidence            4589999999999999977

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=80.55  E-value=2.5  Score=33.01  Aligned_cols=93  Identities=18%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             eEeeecccccH--HHHHHHhCCCcEEEEEeccCChhhHHHHHHcCccchhhhhccc------CCC-C-C--CccceEEec
Q 019879          183 NIMDMNAGFGG--FAAAIQSSKLWVMNVVPTLADKNTLGVIYERGLIGIYHDWCEA------FST-Y-P--RTYDLIHAH  250 (334)
Q Consensus       183 ~VLD~GCG~G~--faa~L~~~~v~v~nVv~vD~s~~~L~~a~~Rgli~~~~d~~e~------l~~-y-p--~sFDlVha~  250 (334)
                      +|-=+|||.-|  +|+.|.++|.   +|+..|.++..++.+.+.|....+...-+.      ..+ . .  ..+|+|+..
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             EEEEECccHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            45557888766  6777788874   678888887777777665532111100000      000 0 1  567888754


Q ss_pred             hhhccccCcCCHHHHHHHHHHhhcCCeEEEEEeC
Q 019879          251 GLFSLYKDKCNIEDILLEMDRILRPEGAIIIRDE  284 (334)
Q Consensus       251 ~vfs~~~~~c~~~~~L~Em~RVLRPGG~lii~D~  284 (334)
                           .+ ....+.++.++...|.++-.+++.-.
T Consensus        80 -----v~-~~~~~~~~~~i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          80 -----VP-AIHHASIAANIASYISEGQLIILNPG  107 (184)
T ss_dssp             -----SC-GGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             -----Ec-hhHHHHHHHHhhhccCCCCEEEEeCC
Confidence                 11 23467899999999999987766543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.29  E-value=0.98  Score=40.45  Aligned_cols=71  Identities=8%  Similarity=0.071  Sum_probs=44.6

Q ss_pred             ccccchhhhhhHHHHHHHHHHHhhcCCCCCceEeeecccccHHHHHHHhCCCcEEEEEeccCChhhHHHHHHc
Q 019879          152 AESYQEDSNKWKKHVNAYKKINRLLDSGRYRNIMDMNAGFGGFAAAIQSSKLWVMNVVPTLADKNTLGVIYER  224 (334)
Q Consensus       152 ~e~f~~d~~~W~~~v~~y~~ll~~l~~~~~r~VLD~GCG~G~faa~L~~~~v~v~nVv~vD~s~~~L~~a~~R  224 (334)
                      ...|-.|...=.+.++. ..+-.........+||++|.|.|.++..|.+.+. .-.|+.++.++...+...++
T Consensus        16 GQnfL~d~~i~~~Iv~~-~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~   86 (322)
T d1i4wa_          16 GFKYLWNPTVYNKIFDK-LDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAK   86 (322)
T ss_dssp             GCCCBCCHHHHHHHHHH-HCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHH-hcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHh
Confidence            45677776653333322 2111112223456899999999999999987521 12688999987777765554