Citrus Sinensis ID: 019934

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccEEEEccccccEEEEEccccccEEEEEHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
ccEEEccccccccccccEEEEcccccccccccEEcccccccccccccccEEEEEEEccccccccccccHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHcHHHHHHHcccccccEEEEEcccccEEEEEccccccEEEEEcHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHcccccccccccc
MATVTLSsslfstqkprtlsfsygvssdklnhtsfsgnfkfgsmkqsrrmrLVPVCRAAASVVFrdldaddfrhpldkQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNleapdlyvrqspvpnaytlaisgkkpFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANiltlgaytipgigGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLaggcpsladQLNVDAFLEQArsydkassspvgwyIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
matvtlssslfstqkprTLSFSygvssdklnhTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSydkassspvgWYIRNAqtrqlshpLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
************************************************RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKA*SSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASL*************
********SLF***************************************RLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAG*************FLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLL************
**********FSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQA*********PVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
*ATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMK*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATVTLSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVHTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q8PSE5294 Protease HtpX homolog 2 O yes no 0.402 0.455 0.297 1e-07
Q8TP15294 Protease HtpX homolog 2 O yes no 0.408 0.462 0.275 3e-07
A9M3Q1279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
B4RKA0279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
Q5F9J4279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
A1KT72279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
Q9K006279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
Q9JV19279 Protease HtpX homolog OS= yes no 0.195 0.232 0.384 1e-06
Q2RKK7299 Protease HtpX homolog OS= yes no 0.408 0.454 0.265 3e-06
Q6L2Q7307 Protease HtpX homolog OS= no no 0.216 0.234 0.402 5e-06
>sp|Q8PSE5|HTPX2_METMA Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1 Back     alignment and function desciption
 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 24/158 (15%)

Query: 122 LMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHE 181
           ++T    I +L  P + + ++ VPNA+    +  K  V V T L++ L+  EL+AVLAHE
Sbjct: 82  MITRLCAIADLPKPQVAIVRTQVPNAFATGRNQNKAVVAVTTGLMDKLSPAELEAVLAHE 141

Query: 182 LGHLKCDHGVWLTFANILTLGAYTIP----GIGGMIAQSLEEQ---LFRWL--------- 225
           L H+K      LT A+ L+  A+ I       G M     +E    +  WL         
Sbjct: 142 LSHVKNRDMAVLTIASFLSSVAFYIVRYSLYFGNMGGGRRKEGGGIMLVWLVSIVVWIVS 201

Query: 226 --------RAAELTCDRAALLVSQDPKVVISVLMKLAG 255
                   R  E + DR A +++  P  + S LMK++G
Sbjct: 202 FLLIRALSRYREFSADRGAAVITGQPANLASALMKISG 239

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1 Back     alignment and function description
>sp|A9M3Q1|HTPX_NEIM0 Protease HtpX homolog OS=Neisseria meningitidis serogroup C (strain 053442) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|B4RKA0|HTPX_NEIG2 Protease HtpX homolog OS=Neisseria gonorrhoeae (strain NCCP11945) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q5F9J4|HTPX_NEIG1 Protease HtpX homolog OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|A1KT72|HTPX_NEIMF Protease HtpX homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q9K006|HTPX_NEIMB Protease HtpX homolog OS=Neisseria meningitidis serogroup B (strain MC58) GN=htpX PE=3 SV=2 Back     alignment and function description
>sp|Q9JV19|HTPX_NEIMA Protease HtpX homolog OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073) GN=htpX PE=3 SV=1 Back     alignment and function description
>sp|Q6L2Q7|HTPX_PICTO Protease HtpX homolog OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=htpX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
225451439363 PREDICTED: uncharacterized protein LOC10 0.948 0.870 0.784 1e-147
255536903338 metalloendopeptidase, putative [Ricinus 0.966 0.952 0.766 1e-146
356558714329 PREDICTED: uncharacterized protein LOC10 0.867 0.878 0.823 1e-144
297814950344 peptidase M48 family protein [Arabidopsi 0.924 0.895 0.767 1e-140
18405231344 Peptidase family M48 family protein [Ara 0.924 0.895 0.767 1e-140
449455858334 PREDICTED: protease HtpX homolog 1-like 0.978 0.976 0.746 1e-140
224060249347 predicted protein [Populus trichocarpa] 0.933 0.896 0.781 1e-139
21553677344 unknown [Arabidopsis thaliana] 0.924 0.895 0.763 1e-139
115442497327 Os01g0970700 [Oryza sativa Japonica Grou 0.837 0.853 0.783 1e-129
357134404325 PREDICTED: uncharacterized protein LOC10 0.795 0.815 0.819 1e-128
>gi|225451439|ref|XP_002273907.1| PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera] gi|296082349|emb|CBI21354.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/338 (78%), Positives = 296/338 (87%), Gaps = 22/338 (6%)

Query: 1   MATVTLSSSLFSTQKPRTLSFSYG-VSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAA 59
           MA+V LSS++F           +G +++ K   +SF    +F  +K+++R+R V VCRAA
Sbjct: 39  MASVPLSSTVF-----------FGSITAKKSRFSSFP--LEFRPLKKTQRVR-VSVCRAA 84

Query: 60  ASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119
            SVVFRDLDADDFRHPLDKQNTL+LRAIPGLN++G+ALLGTVTEQ+MLLENIGTSVLVSK
Sbjct: 85  -SVVFRDLDADDFRHPLDKQNTLILRAIPGLNEIGKALLGTVTEQVMLLENIGTSVLVSK 143

Query: 120 NQL------MTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 173
           NQL      M EAAEILNL+APDLY+RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE
Sbjct: 144 NQLSDLHQLMLEAAEILNLDAPDLYIRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 203

Query: 174 LQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCD 233
           LQAVLAHELGHLKCDHGVWLTFANILTLGAY++PG+GG+IA+ LEEQLFRWLRAAELTCD
Sbjct: 204 LQAVLAHELGHLKCDHGVWLTFANILTLGAYSLPGLGGLIARQLEEQLFRWLRAAELTCD 263

Query: 234 RAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQT 293
           RAALLV+QDPKVVISVLMKLAGG PSLADQLNVDAFLEQARSY+KASSSPVGWYIRNAQT
Sbjct: 264 RAALLVAQDPKVVISVLMKLAGGSPSLADQLNVDAFLEQARSYEKASSSPVGWYIRNAQT 323

Query: 294 RQLSHPLLVLRAREIDAWSRSQDYASLLKRAMKMNTVH 331
           RQLSHPL VLRAREID WSRS+DY SLL RA  +N+V 
Sbjct: 324 RQLSHPLPVLRAREIDEWSRSKDYRSLLSRAAPINSVQ 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255536903|ref|XP_002509518.1| metalloendopeptidase, putative [Ricinus communis] gi|223549417|gb|EEF50905.1| metalloendopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356558714|ref|XP_003547648.1| PREDICTED: uncharacterized protein LOC100776801 [Glycine max] Back     alignment and taxonomy information
>gi|297814950|ref|XP_002875358.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321196|gb|EFH51617.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405231|ref|NP_566808.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|30688648|ref|NP_850640.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|9279635|dbj|BAB01093.1| unnamed protein product [Arabidopsis thaliana] gi|15010606|gb|AAK73962.1| AT3g27110/MOJ10_21 [Arabidopsis thaliana] gi|27363402|gb|AAO11620.1| At3g27110/MOJ10_21 [Arabidopsis thaliana] gi|222423154|dbj|BAH19556.1| AT3G27110 [Arabidopsis thaliana] gi|332643747|gb|AEE77268.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|332643748|gb|AEE77269.1| Peptidase family M48 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449455858|ref|XP_004145667.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] gi|449521182|ref|XP_004167609.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224060249|ref|XP_002300105.1| predicted protein [Populus trichocarpa] gi|222847363|gb|EEE84910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115442497|ref|NP_001045528.1| Os01g0970700 [Oryza sativa Japonica Group] gi|15289972|dbj|BAB63667.1| peptidase M48-like [Oryza sativa Japonica Group] gi|113535059|dbj|BAF07442.1| Os01g0970700 [Oryza sativa Japonica Group] gi|125529277|gb|EAY77391.1| hypothetical protein OsI_05379 [Oryza sativa Indica Group] gi|125601518|gb|EAZ41094.1| hypothetical protein OsJ_25586 [Oryza sativa Japonica Group] gi|215704388|dbj|BAG93822.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357134404|ref|XP_003568807.1| PREDICTED: uncharacterized protein LOC100839697 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2092010344 AT3G27110 [Arabidopsis thalian 0.945 0.915 0.762 1.6e-125
UNIPROTKB|O53978348 Rv1977 "Uncharacterized protei 0.777 0.744 0.311 6e-32
UNIPROTKB|Q887E6 400 PSPTO_1350 "Uncharacterized pr 0.516 0.43 0.282 2.1e-06
UNIPROTKB|P65815286 htpX "Protease HtpX homolog" [ 0.195 0.227 0.307 0.00043
TIGR_CMR|CHY_0108281 CHY_0108 "peptidase, M48 famil 0.156 0.185 0.403 0.0007
TAIR|locus:2092010 AT3G27110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 253/332 (76%), Positives = 282/332 (84%)

Query:     6 LSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSR-RMRLVPVCRAAASVVF 64
             LS SL   + P+ + FS G  S      S+ G   FG+ K  R R+R VP+CRA   ++F
Sbjct:    20 LSRSL-GYRLPKKVGFSSGRRS-----VSYIG---FGAEKVGRFRVR-VPICRAVPPLLF 69

Query:    65 RDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQL-- 122
             +DLDADDFRHP DKQNTLLLRAIPGLN+ G+ALLG++TEQIMLLENIGTSVLVSKNQL  
Sbjct:    70 KDLDADDFRHPFDKQNTLLLRAIPGLNEFGKALLGSMTEQIMLLENIGTSVLVSKNQLSD 129

Query:   123 ----MTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVL 178
                 + EAAEILN+EAPDLYVRQSPVPNAYTLAISGKKPF+VVHTSL+ELLT  ELQAVL
Sbjct:   130 LHGLLVEAAEILNIEAPDLYVRQSPVPNAYTLAISGKKPFIVVHTSLIELLTSAELQAVL 189

Query:   179 AHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALL 238
             AHELGHLKCDHGVWLTFANILTLGAYT+P  G MIA++LEEQL RWLR+AELTCDRAALL
Sbjct:   190 AHELGHLKCDHGVWLTFANILTLGAYTVPAFGQMIARTLEEQLLRWLRSAELTCDRAALL 249

Query:   239 VSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSH 298
             V+QDPKVV+SVLMKLAGGCPS+ADQLNVDAFLEQARSYDKASSSP+GWYIRNAQT QLSH
Sbjct:   250 VAQDPKVVVSVLMKLAGGCPSIADQLNVDAFLEQARSYDKASSSPLGWYIRNAQTSQLSH 309

Query:   299 PLLVLRAREIDAWSRSQDYASLLKRAMKMNTV 330
             PL VLRAREID WSRS +Y SLLKRA + +TV
Sbjct:   310 PLPVLRAREIDEWSRSLEYKSLLKRANRKSTV 341
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
UNIPROTKB|O53978 Rv1977 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|Q887E6 PSPTO_1350 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|P65815 htpX "Protease HtpX homolog" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0108 CHY_0108 "peptidase, M48 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.84LOW CONFIDENCE prediction!
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
COG0501302 COG0501, HtpX, Zn-dependent protease with chaperon 2e-24
pfam01435223 pfam01435, Peptidase_M48, Peptidase family M48 1e-14
PRK02391296 PRK02391, PRK02391, heat shock protein HtpX; Provi 4e-11
PRK01265324 PRK01265, PRK01265, heat shock protein HtpX; Provi 2e-09
PRK02870336 PRK02870, PRK02870, heat shock protein HtpX; Provi 1e-07
PRK03982288 PRK03982, PRK03982, heat shock protein HtpX; Provi 3e-07
PRK04897298 PRK04897, PRK04897, heat shock protein HtpX; Provi 3e-07
PRK01345317 PRK01345, PRK01345, heat shock protein HtpX; Provi 5e-07
PRK03001283 PRK03001, PRK03001, M48 family peptidase; Provisio 1e-05
PRK05457284 PRK05457, PRK05457, heat shock protein HtpX; Provi 2e-04
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  100 bits (251), Expect = 2e-24
 Identities = 59/262 (22%), Positives = 97/262 (37%), Gaps = 48/262 (18%)

Query: 87  IPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK--------NQLMTEAAEILNLEA---- 134
           I  L      L+  +  + ++L+++G   L             L+ + AE+         
Sbjct: 58  IALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHM 117

Query: 135 PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH----- 189
           P++Y+ ++P PNA+ L    K   VVV T L++LL   EL+AVLAHELGH+K  H     
Sbjct: 118 PEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRL 177

Query: 190 ----GVWLTFANILTL-----GAYTIPGIGGMIAQSLEEQLF-----RWLRAAELTCDRA 235
                +   F  + TL               ++   L   L       + R  E   DR 
Sbjct: 178 TLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRF 237

Query: 236 ALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQ 295
           A  ++  P+ + S L KLA        +  + +                G+     Q   
Sbjct: 238 AAKLTG-PEKLASALQKLARLSGRANSKAFIAS----------------GFSGGRLQALF 280

Query: 296 LSHPLLVLRAREIDAWSRSQDY 317
            +HP L  R   +   + +   
Sbjct: 281 STHPPLAERIAALRQLALTVGI 302

Length = 302
>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 Back     alignment and domain information
>gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional Back     alignment and domain information
>gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional Back     alignment and domain information
>gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PRK04897298 heat shock protein HtpX; Provisional 100.0
PRK02870336 heat shock protein HtpX; Provisional 100.0
PRK03072288 heat shock protein HtpX; Provisional 100.0
PRK01345317 heat shock protein HtpX; Provisional 100.0
PRK03982288 heat shock protein HtpX; Provisional 100.0
PRK03001283 M48 family peptidase; Provisional 100.0
PRK05457284 heat shock protein HtpX; Provisional 100.0
PRK02391296 heat shock protein HtpX; Provisional 100.0
PRK01265324 heat shock protein HtpX; Provisional 100.0
COG0501302 HtpX Zn-dependent protease with chaperone function 99.96
PF01435226 Peptidase_M48: Peptidase family M48 This is family 99.92
COG4783 484 Putative Zn-dependent protease, contains TPR repea 99.86
KOG2719428 consensus Metalloprotease [General function predic 99.83
KOG2661424 consensus Peptidase family M48 [Posttranslational 99.76
COG4784 479 Putative Zn-dependent protease [General function p 99.73
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 99.68
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 99.35
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 97.69
PF10463206 Peptidase_U49: Peptidase U49; InterPro: IPR019504 97.12
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 97.06
PRK09672305 phage exclusion protein Lit; Provisional 97.04
PF04228292 Zn_peptidase: Putative neutral zinc metallopeptida 96.97
COG1451223 Predicted metal-dependent hydrolase [General funct 95.97
PF13203292 DUF2201_N: Putative metallopeptidase domain 95.42
PF1369979 DUF4157: Domain of unknown function (DUF4157) 95.19
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 94.42
smart00731146 SprT SprT homologues. Predicted to have roles in t 93.82
PRK04351149 hypothetical protein; Provisional 93.68
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 92.72
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 92.65
COG2856213 Predicted Zn peptidase [Amino acid transport and m 91.4
PF04298222 Zn_peptidase_2: Putative neutral zinc metallopepti 90.26
PRK04860160 hypothetical protein; Provisional 90.21
PF14247220 DUF4344: Domain of unknown function (DUF4344) 87.7
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 87.55
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 85.1
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 84.6
TIGR00181591 pepF oligoendopeptidase F. This family represents 84.29
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 82.37
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.7e-37  Score=293.50  Aligned_cols=253  Identities=17%  Similarity=0.225  Sum_probs=172.8

Q ss_pred             cccccccc-ccchhHHHHHHHHHHHhcCccccccCCcchHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHcCCccccCh
Q 019934           41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK  119 (333)
Q Consensus        41 ~~~~~~n~-~t~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~l~~ipgl~~~~~~~i~~~~~~~~~~~~~~~~v~~~~  119 (333)
                      |+||++|+ ||.+++ +.+.+++.++|...+.+..+ +......+..   +..++..+++++...++..+..+... +++
T Consensus         3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~-v~~   76 (298)
T PRK04897          3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIAL---IIGVIYALIMIFQSTNVVMSMNHARE-VTE   76 (298)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHH---HHHHHHHHHHHHhhHHHHHHhCCCEE-CCh
Confidence            68999999 999888 55556677777543321111 1011111111   22356678889999998888766433 343


Q ss_pred             HH------HHHHHHHHcCCCCCcEEEEeCCCCCEEEEeccCCCCEEEEchhHHhhcCHHHHHHHHHHHHHHHHhcchHHH
Q 019934          120 NQ------LMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL  193 (333)
Q Consensus       120 ~q------~~~~l~~~lgi~~p~v~v~~s~~~NAfa~G~~~~~~~I~lt~gLl~~L~~~EL~aVLaHElgHi~~~h~~~~  193 (333)
                      +|      .++++|+++|++.|++|+++++.+|||++|+++.++.|++++||++.+++||++||||||+||++++|..++
T Consensus        77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~  156 (298)
T PRK04897         77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS  156 (298)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence            32      899999999999999999999999999999877778999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH----------hchh----------hH--H---HHH-------HHHH-H-HHHHHHHHHHHHHHHHHHHh
Q 019934          194 TFANILTLGAY----------TIPG----------IG--G---MIA-------QSLE-E-QLFRWLRAAELTCDRAALLV  239 (333)
Q Consensus       194 ~l~~~l~~~~~----------~~~~----------~~--~---~i~-------~~l~-~-~l~~~sR~~E~~AD~~a~~~  239 (333)
                      ++...+..+..          +..+          .+  .   .+.       .++. . ....+||.+||+||++|+++
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l  236 (298)
T PRK04897        157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL  236 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            76543221110          0000          00  0   000       1111 1 12468999999999999999


Q ss_pred             cCCcHHHHHHHHHHhccCCCCc-hhhcHHHHHHHHhhccccCCCCCchhhhcccccCCCCCChHHHHHHHHh
Q 019934          240 SQDPKVVISVLMKLAGGCPSLA-DQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA  310 (333)
Q Consensus       240 ~~~p~~~~~aL~kla~~~~~~~-~~~~~~~f~~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~  310 (333)
                      ++||+++++||.|++..+.... .+.+.+.+.     +.  +    +.+......+++|||++.+||++|++
T Consensus       237 t~~p~~La~AL~KL~~~~~~~~~~~~~~~~~~-----i~--~----p~~~~~~~~lfsTHP~~~eRI~~L~~  297 (298)
T PRK04897        237 TRNPQGLISALEKISNSQPMKHPVDDASAALY-----IS--D----PLKKKGLSKLFDTHPPIEERIERLKN  297 (298)
T ss_pred             hCCHHHHHHHHHHHHhccccccccChHHHHhc-----cC--C----CcccchHHHHHcCCcCHHHHHHHHHc
Confidence            9999999999999997654321 111111211     00  1    11100112479999999999999985

>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2719 consensus Metalloprotease [General function prediction only] Back     alignment and domain information
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4784 Putative Zn-dependent protease [General function prediction only] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>PRK09672 phage exclusion protein Lit; Provisional Back     alignment and domain information
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PF13203 DUF2201_N: Putative metallopeptidase domain Back     alignment and domain information
>PF13699 DUF4157: Domain of unknown function (DUF4157) Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PF14247 DUF4344: Domain of unknown function (DUF4344) Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
3cqb_A107 Probable protease HTPX homolog; heat shock protein 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 1e-04
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 6e-04
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 Back     alignment and structure
 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 125 EAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 184
             A+   +  P + +  S   NA+          V V T L+  +TR E +AVLAHE+ H
Sbjct: 34  RQAQQAGIGMPTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNMTRDEAEAVLAHEVSH 93

Query: 185 LK 186
           + 
Sbjct: 94  IA 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 Back     alignment and structure
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
4aw6_A482 CAAX prenyl protease 1 homolog; hydrolase, M48 pep 99.95
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 99.93
3cqb_A107 Probable protease HTPX homolog; heat shock protein 99.74
3dte_A301 IRRE protein; radiotolerance, gene regulation, met 96.82
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A Back     alignment and structure
Probab=99.95  E-value=1.8e-26  Score=230.23  Aligned_cols=179  Identities=25%  Similarity=0.272  Sum_probs=129.3

Q ss_pred             cCCccccChHH---HHHHHHHHcCCCCCcEEEEe----CCCCCEEEEeccCCCCEEEEchhHHhh---------------
Q 019934          111 IGTSVLVSKNQ---LMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLVEL---------------  168 (333)
Q Consensus       111 ~~~~v~~~~~q---~~~~l~~~lgi~~p~v~v~~----s~~~NAfa~G~~~~~~~I~lt~gLl~~---------------  168 (333)
                      .++-.+.++.+   .++++|+++|+|.|++||++    ++.+|||++|++ ++++|++.++|++.               
T Consensus       223 fnk~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~-~~krIVl~dtLl~~~~~~~~~~~~~~~~~  301 (482)
T 4aw6_A          223 FDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFF-KNKRIVLFDTLLEEYSVLNKDIQEDSGME  301 (482)
T ss_dssp             HSCEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESS-SCEEEEEEHHHHC----------------
T ss_pred             cCCCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCC-CCcEEEEEchHHHhccccccccccccccc
Confidence            34444555444   99999999999999999999    789999999985 56789999999987               


Q ss_pred             ----------------------cCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH------HHhc--------------
Q 019934          169 ----------------------LTRKELQAVLAHELGHLKCDHGVWLTFANILTLG------AYTI--------------  206 (333)
Q Consensus       169 ----------------------L~~~EL~aVLaHElgHi~~~h~~~~~l~~~l~~~------~~~~--------------  206 (333)
                                            |++||++||+|||+||++++|..++++...+..+      ..+.              
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~  381 (482)
T 4aw6_A          302 PRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDS  381 (482)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSC
T ss_pred             ccccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCc
Confidence                                  8999999999999999999999988765443211      1110              


Q ss_pred             -hh-hHHHH-H----HH---H-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCchhhcHHHHHHHHhh
Q 019934          207 -PG-IGGMI-A----QS---L-EEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARS  275 (333)
Q Consensus       207 -~~-~~~~i-~----~~---l-~~~l~~~sR~~E~~AD~~a~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~f~~qa~~  275 (333)
                       |. ++.++ .    .+   + ......+||.+|++||++|+++ ++|+++++||.|++..+...+              
T Consensus       382 ~p~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~p~~L~~AL~KL~~~n~s~~--------------  446 (482)
T 4aw6_A          382 QPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GKAKDLYSALIKLNKDNLGFP--------------  446 (482)
T ss_dssp             CCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHTTCCS--------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccCC--------------
Confidence             10 11111 1    11   1 1123578999999999999998 679999999999987653211              


Q ss_pred             ccccCCCCCchhhhcccccCCCCCChHHHHHHHHhHhhhh
Q 019934          276 YDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQ  315 (333)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~~~~~~  315 (333)
                            .+.+++    ..+++|||++.+||++|++..++.
T Consensus       447 ------~~~~~~----~~~~sTHP~~~eRI~~L~~~~~~~  476 (482)
T 4aw6_A          447 ------VSDWLF----SMWHYSHPPLLERLQALKTMKQHA  476 (482)
T ss_dssp             ------CCCHHH----HHHSCSSCCHHHHHHHHHHC----
T ss_pred             ------CCChHH----HHHhcCCcCHHHHHHHHHHhhHhh
Confidence                  112222    136899999999999999876654
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00