Citrus Sinensis ID: 019954

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MAGGRMYNQNSSSGGGTSSLSFLIQSQKGSCSNSQNLDASFLSGPSPSPFLGPRSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEKESKNTELPVVNKQEPPQISEPVADSAASEGKVCKASVVACKQEDISSAKSDIFDSDSPNYTDGVHSSLLETCDSSYVFEPEQSDLSQDEDDSLSKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
cccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccc
ccccEEcccccccccccccHHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccc
maggrmynqnsssgggtssLSFLIQSqkgscsnsqnldasflsgpspspflgprsmvsfedvhlangsnnrpffrpfdrdengdedfdeyfhqpekkrrltVDQVQFLEKSFEVENKLEPERKIQLAKdlglqprqVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKekeskntelpvvnkqeppqisepvadsaasegkvCKASVVACkqedissaksdifdsdspnytdgvhsslletcdssyvfepeqsdlsqdeddslsknvllppyvfpkleeteysdpptnscnfgfpiedhafwswsf
maggrmynqnsssgggTSSLSFLIQSQKGSCSNSQNLDASFLSGPSPSPFLGPRSMVSFEDVHLangsnnrpffrpFDRDENGDEDFDEyfhqpekkrrltvDQVQFLEKSfevenklepeRKIQLakdlglqprqvAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKltdklqvkekeskntelpvvnkqeppqiSEPVADSAASEGKVCKASVVACKqedissaksdifdsdspNYTDGVHSSLLETCDSSYVFEPEQSDlsqdeddslskNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
MAGGRMYNQNsssgggtsslsFLIQSQKGSCSNSQNLDAsflsgpspspflgpRSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFkekeklkaevlklTDKLQVKEKESKNTELPVVNKQEPPQISEPVADSAASEGKVCKASVVACKQEDISSAKSDIFDSDSPNYTDGVHSSLLETCDSSYVFEPeqsdlsqdeddslsKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
*****************************************************************************************************VDQVQFLEK*F***********IQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKE*******VL***********************************************VV**********************************************************VLLPPYVFPKL**********NSCNFGFPIEDHAFWSW**
*****************************************************************************************************VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA**************************************************************************************************************************************************NVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
*****************SSLSFLI***********NLDASFLSGPSPSPFLGPRSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKE************************************SVVACKQEDISSAKSDIFDSDSPNYTDGVHSSLLETCDSSYVFE*************LSKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
*******NQNSSSGGGTSSLSFLIQSQKGSCSNSQNLDASFLSGPSPSP***********************************************KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL*****************************************************************************DSSY**************DSLSKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MAGGRMYNQNSSSGGGTSSLSFLIQSQKGSCSNSQNLDASFLSGPSPSPFLGPRSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKNTELPVVNKQEPPQISEPVADSAASEGKVCKASVVACKQEDISSAKSDIFDSDSPNYTDGVHSSLLETCDSSYVFEPEQSDLSQDEDDSLSKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q02283272 Homeobox-leucine zipper p yes no 0.699 0.856 0.421 1e-41
Q6YWR4343 Homeobox-leucine zipper p yes no 0.345 0.335 0.6 4e-36
A2X980345 Homeobox-leucine zipper p N/A no 0.345 0.333 0.6 4e-36
Q6Z248269 Homeobox-leucine zipper p no no 0.372 0.460 0.565 3e-35
A2YWC0269 Homeobox-leucine zipper p N/A no 0.372 0.460 0.565 3e-35
Q6ZA74349 Homeobox-leucine zipper p no no 0.309 0.295 0.650 3e-35
Q9XH36350 Homeobox-leucine zipper p N/A no 0.309 0.294 0.650 3e-35
Q940J1294 Homeobox-leucine zipper p no no 0.468 0.530 0.477 1e-34
Q6K498277 Homeobox-leucine zipper p no no 0.366 0.440 0.595 1e-34
Q9XH37277 Homeobox-leucine zipper p N/A no 0.366 0.440 0.595 1e-34
>sp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1 Back     alignment and function desciption
 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/287 (42%), Positives = 158/287 (55%), Gaps = 54/287 (18%)

Query: 52  GPRSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKS 111
           G RSM++ E+      S  RPFF      E+  +D       PEKKRRLT +QV  LEKS
Sbjct: 32  GARSMMNMEET-----SKRRPFF---SSPEDLYDDDFYDDQLPEKKRRLTTEQVHLLEKS 83

Query: 112 FEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADY 171
           FE ENKLEPERK QLAK LGLQPRQVA+WFQNRRARWKTKQLE+DYD+L+++Y+ L ++Y
Sbjct: 84  FETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNY 143

Query: 172 DNLFKEKEKLKAEVLKLTDKLQVKEKESKNTELPVVNKQEPPQISEPVADSAASEGKVCK 231
           D++  + +KL++EV  LT+KLQ K++ +     P     EP Q+ +PV  +AA       
Sbjct: 144 DSIVMDNDKLRSEVTSLTEKLQGKQETANE---PPGQVPEPNQL-DPVYINAA------- 192

Query: 232 ASVVACKQED---ISSAKSDIFDSDSPNYTDGVHSSLLETCDS---SYVFEPEQSDLS-Q 284
               A K ED     S  S + D D+P         LL++CDS   S V   + S+ S  
Sbjct: 193 ----AIKTEDRLSSGSVGSAVLDDDAPQ--------LLDSCDSYFPSIVPIQDNSNASDH 240

Query: 285 DEDDSLSKNVLLPPYVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSW 331
           D D S   +V +                PT S +     E  AFW W
Sbjct: 241 DNDRSCFADVFV----------------PTTSPSHDHHGESLAFWGW 271
Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6YWR4|HOX16_ORYSJ Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1 Back     alignment and function description
>sp|A2X980|HOX16_ORYSI Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z248|HOX20_ORYSJ Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1 Back     alignment and function description
>sp|A2YWC0|HOX20_ORYSI Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZA74|HOX5_ORYSJ Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH36|HOX5_ORYSI Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1 Back     alignment and function description
>sp|Q940J1|ATB16_ARATH Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2 Back     alignment and function description
>sp|Q6K498|HOX4_ORYSJ Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH37|HOX4_ORYSI Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
118488004314 unknown [Populus trichocarpa] 0.936 0.993 0.737 1e-128
255540907319 homeobox protein, putative [Ricinus comm 0.909 0.949 0.735 1e-122
225456662317 PREDICTED: homeobox-leucine zipper prote 0.942 0.990 0.683 1e-116
224133286268 predicted protein [Populus trichocarpa] 0.798 0.992 0.775 1e-113
224119128268 predicted protein [Populus trichocarpa] 0.798 0.992 0.746 1e-110
449469470339 PREDICTED: homeobox-leucine zipper prote 0.837 0.823 0.719 1e-109
147860587333 hypothetical protein VITISV_039798 [Viti 0.834 0.834 0.707 1e-108
302398829324 HD domain class transcription factor [Ma 0.831 0.854 0.700 1e-108
449469472334 PREDICTED: homeobox-leucine zipper prote 0.987 0.985 0.650 1e-107
449487811334 PREDICTED: LOW QUALITY PROTEIN: homeobox 0.987 0.985 0.647 1e-107
>gi|118488004|gb|ABK95823.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/335 (73%), Positives = 275/335 (82%), Gaps = 23/335 (6%)

Query: 1   MAGGRMYNQNSSSGGGTSSLSFLIQSQKGSCSNSQNLDASFLSGPSPSPFLGPRSMVSFE 60
           MAGG        +GG  S+LS L+QSQ+G C+ SQ L++ FLSG SPS FLG RSM+SFE
Sbjct: 1   MAGG--------TGGSNSNLSVLLQSQRGPCAASQPLESFFLSGSSPS-FLGSRSMMSFE 51

Query: 61  DVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEP 120
           DVH ANGS  RPFFR FD ++NGD+D DEYFHQPEKKRRLTVDQVQFLEKSFE+ENKLEP
Sbjct: 52  DVHQANGST-RPFFRSFDHEDNGDDDLDEYFHQPEKKRRLTVDQVQFLEKSFELENKLEP 110

Query: 121 ERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEK 180
           ERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQ+SYNSLKADYDNL KEKEK
Sbjct: 111 ERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQSSYNSLKADYDNLLKEKEK 170

Query: 181 LKAEVLKLTDKLQVKEKESKNTELPVVNK--QEPPQISEPVADSAASEGKVCKASVVACK 238
           LKAEV  LTDKL +KEKE   +EL   +   QEPP+    +ADS ASEG+V K S VACK
Sbjct: 171 LKAEVNLLTDKLLLKEKEKGISELSDKDALSQEPPK--RAIADS-ASEGEVSKISTVACK 227

Query: 239 QEDISSAKSDIFDSDSPNYTDGVHSSLLETCDSSYVFEPEQSDLSQDEDDSLSKNVLLPP 298
           QEDISSAKSDIFDSDSP+Y DGVHSSLLE  DSSYVFEP+QSDLSQDE+D+ SK+ LLPP
Sbjct: 228 QEDISSAKSDIFDSDSPHYADGVHSSLLEAGDSSYVFEPDQSDLSQDEEDNFSKS-LLPP 286

Query: 299 YVFPKLEETEYSDPPTNSCNFGFPIEDHAFWSWSF 333
           YVFPKLE+ +YSDPP +        EDHAFWSWS+
Sbjct: 287 YVFPKLEDDDYSDPPAS-------FEDHAFWSWSY 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540907|ref|XP_002511518.1| homeobox protein, putative [Ricinus communis] gi|223550633|gb|EEF52120.1| homeobox protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225456662|ref|XP_002271692.1| PREDICTED: homeobox-leucine zipper protein HAT5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133286|ref|XP_002321530.1| predicted protein [Populus trichocarpa] gi|222868526|gb|EEF05657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119128|ref|XP_002317992.1| predicted protein [Populus trichocarpa] gi|222858665|gb|EEE96212.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469470|ref|XP_004152443.1| PREDICTED: homeobox-leucine zipper protein HAT5-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147860587|emb|CAN83969.1| hypothetical protein VITISV_039798 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302398829|gb|ADL36709.1| HD domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449469472|ref|XP_004152444.1| PREDICTED: homeobox-leucine zipper protein HAT5-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487811|ref|XP_004157812.1| PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2084228272 HB-1 "homeobox 1" [Arabidopsis 0.573 0.702 0.466 1.2e-39
TAIR|locus:2140055294 HB16 "homeobox protein 16" [Ar 0.468 0.530 0.459 3.3e-31
TAIR|locus:2041283311 HB6 "homeobox protein 6" [Arab 0.393 0.421 0.496 7.9e-30
TAIR|locus:2205075294 ATHB13 [Arabidopsis thaliana ( 0.279 0.316 0.670 1e-29
TAIR|locus:2150901314 HB-3 "homeobox 3" [Arabidopsis 0.291 0.308 0.643 2.7e-29
TAIR|locus:2168225312 HB5 "homeobox protein 5" [Arab 0.240 0.256 0.712 6.4e-28
TAIR|locus:2102107286 HB20 "homeobox protein 20" [Ar 0.336 0.391 0.552 1.3e-27
TAIR|locus:2202795255 AtHB23 "homeobox protein 23" [ 0.285 0.372 0.593 1.1e-25
TAIR|locus:2079542235 HB-12 "homeobox 12" [Arabidops 0.516 0.731 0.350 1.4e-23
TAIR|locus:2062754258 HB-7 "homeobox 7" [Arabidopsis 0.249 0.321 0.530 2.1e-22
TAIR|locus:2084228 HB-1 "homeobox 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 400 (145.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 96/206 (46%), Positives = 127/206 (61%)

Query:    54 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDFDEYFHQPEKKRRLTVDQVQFLEKSFE 113
             RSM++ E+      S  RPFF     D   D+ +D+    PEKKRRLT +QV  LEKSFE
Sbjct:    34 RSMMNMEET-----SKRRPFFSS-PEDLYDDDFYDDQL--PEKKRRLTTEQVHLLEKSFE 85

Query:   114 VENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDN 173
              ENKLEPERK QLAK LGLQPRQVA+WFQNRRARWKTKQLE+DYD+L+++Y+ L ++YD+
Sbjct:    86 TENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDS 145

Query:   174 LFXXXXXXXXXXXXXTDKLQVKEKESKNTELPVVNKQEPPQISEPVADSAAS---EGKVC 230
             +              T+KLQ K+ E+ N   P     EP Q+ +PV  +AA+   E ++ 
Sbjct:   146 IVMDNDKLRSEVTSLTEKLQGKQ-ETANE--PPGQVPEPNQL-DPVYINAAAIKTEDRLS 201

Query:   231 KASVVACKQEDISSAKSDIFDSDSPN 256
               SV +   +D +    D  DS  P+
Sbjct:   202 SGSVGSAVLDDDAPQLLDSCDSYFPS 227
GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA
GO:0009637 "response to blue light" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=IMP
TAIR|locus:2140055 HB16 "homeobox protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041283 HB6 "homeobox protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205075 ATHB13 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150901 HB-3 "homeobox 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168225 HB5 "homeobox protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102107 HB20 "homeobox protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202795 AtHB23 "homeobox protein 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079542 HB-12 "homeobox 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062754 HB-7 "homeobox 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
pfam0004657 pfam00046, Homeobox, Homeobox domain 2e-18
smart0038957 smart00389, HOX, Homeodomain 6e-18
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 2e-17
pfam0218345 pfam02183, HALZ, Homeobox associated leucine zippe 4e-16
COG5576156 COG5576, COG5576, Homeodomain-containing transcrip 7e-09
smart00787312 smart00787, Spc7, Spc7 kinetochore protein 0.002
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information 
 Score = 77.5 bits (192), Expect = 2e-18
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 96  KKRR--LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149
           +++R   T +Q++ LEK FE       E + +LAK LGL  RQV +WFQNRRA+WK
Sbjct: 1   RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWK 56

Length = 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|202143 pfam02183, HALZ, Homeobox associated leucine zipper Back     alignment and domain information
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
KOG0483198 consensus Transcription factor HEX, contains HOX a 99.88
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 99.72
KOG0489261 consensus Transcription factor zerknullt and relat 99.7
KOG0488309 consensus Transcription factor BarH and related HO 99.69
KOG0843197 consensus Transcription factor EMX1 and related HO 99.65
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 99.64
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 99.64
KOG0487308 consensus Transcription factor Abd-B, contains HOX 99.64
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.61
KOG0494332 consensus Transcription factor CHX10 and related H 99.61
KOG0493342 consensus Transcription factor Engrailed, contains 99.6
KOG0850245 consensus Transcription factor DLX and related pro 99.6
KOG0492246 consensus Transcription factor MSH, contains HOX d 99.59
KOG0848317 consensus Transcription factor Caudal, contains HO 99.57
KOG2251228 consensus Homeobox transcription factor [Transcrip 99.51
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.48
KOG4577383 consensus Transcription factor LIM3, contains LIM 99.48
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.47
COG5576156 Homeodomain-containing transcription factor [Trans 99.44
KOG0844408 consensus Transcription factor EVX1, contains HOX 99.41
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 99.39
KOG0491194 consensus Transcription factor BSH, contains HOX d 99.38
KOG0847288 consensus Transcription factor, contains HOX domai 99.32
KOG0486351 consensus Transcription factor PTX1, contains HOX 99.3
KOG3802398 consensus Transcription factor OCT-1, contains POU 99.3
KOG0490235 consensus Transcription factor, contains HOX domai 99.15
KOG0849354 consensus Transcription factor PRD and related pro 98.91
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 98.8
KOG0775304 consensus Transcription factor SIX and related HOX 98.6
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 98.27
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 98.26
KOG0774334 consensus Transcription factor PBX and related HOX 98.26
KOG0490235 consensus Transcription factor, contains HOX domai 97.9
KOG2252558 consensus CCAAT displacement protein and related h 97.85
KOG1146 1406 consensus Homeobox protein [General function predi 97.39
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 96.34
KOG0773342 consensus Transcription factor MEIS1 and related H 96.04
PRK09413121 IS2 repressor TnpA; Reviewed 94.49
KOG3623 1007 consensus Homeobox transcription factor SIP1 [Tran 93.6
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 93.48
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 93.25
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 92.35
smart0034044 HALZ homeobox associated leucin zipper. 89.66
smart0034044 HALZ homeobox associated leucin zipper. 89.09
KOG4196135 consensus bZIP transcription factor MafK [Transcri 87.8
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 86.06
PRK00888105 ftsB cell division protein FtsB; Reviewed 85.44
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 81.11
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 80.67
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information 
Probab=99.88  E-value=7.5e-23  Score=186.24  Aligned_cols=102  Identities=63%  Similarity=0.946  Sum_probs=92.6

Q ss_pred             CCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 019954           92 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADY  171 (333)
Q Consensus        92 ~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq~~ke~~~l~~~~~~Lk~~~  171 (333)
                      ...+|++||+.+|+..||+.|+...++.+.+|..||++|||.+|||+|||||||||||.++++.+|+.|+..++.|+.++
T Consensus        49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~  128 (198)
T KOG0483|consen   49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSEN  128 (198)
T ss_pred             ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhh
Confidence            35577888999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 019954          172 DNLFKEKEKLKAEVLKLTDKLQ  193 (333)
Q Consensus       172 ~~L~~Ene~L~~E~~~l~~~l~  193 (333)
                      +.|..|+..|++++..++..+.
T Consensus       129 ~~Lq~e~~eL~~~~~~~~~~~~  150 (198)
T KOG0483|consen  129 DRLQSEVQELVAELSSLKREMQ  150 (198)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhc
Confidence            8888888888888777665444

>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PRK09413 IS2 repressor TnpA; Reviewed Back     alignment and domain information
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>smart00340 HALZ homeobox associated leucin zipper Back     alignment and domain information
>smart00340 HALZ homeobox associated leucin zipper Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
2e1o_A70 Solution Structure Of Rsgi Ruh-028, A Homeobox Doma 7e-07
2r5y_A88 Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HO 7e-06
1san_A62 The Des(1-6)antennapedia Homeodomain: Comparison Of 9e-06
1hom_A68 Determination Of The Three-Dimensional Structure Of 1e-05
1ahd_P68 Determination Of The Nmr Solution Structure Of An A 1e-05
9ant_A62 Antennapedia Homeodomain-Dna Complex Length = 62 1e-05
2m34_A71 Nmr Structure Of The Homeodomain Transcription Fact 2e-05
1b8i_A81 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 4e-05
2dmt_A80 Solution Structure Of The Homeobox Domain Of Homeob 5e-05
2l9r_A69 Solution Nmr Structure Of Homeobox Domain Of Homeob 1e-04
2h1k_A63 Crystal Structure Of The Pdx1 Homeodomain In Comple 2e-04
1b72_A97 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 2e-04
1nk2_P77 VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES 3e-04
3a01_A93 Crystal Structure Of Aristaless And Clawless Homeod 6e-04
1qry_A80 Homeobox Protein Vnd (Ventral Nervous System Defect 6e-04
1puf_A77 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 8e-04
>pdb|2E1O|A Chain A, Solution Structure Of Rsgi Ruh-028, A Homeobox Domain From Human Cdna Length = 70 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 99  RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149
           R + DQ   LEK FE +  L P  + +LAK L L  RQV  WFQNRRA+W+
Sbjct: 13  RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 63
>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd Site Length = 88 Back     alignment and structure
>pdb|1SAN|A Chain A, The Des(1-6)antennapedia Homeodomain: Comparison Of The Nmr Solution Structure And The Dna Binding Affinity With The Intact Antennapedia Homeodomain Length = 62 Back     alignment and structure
>pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The Antennapedia Homeodomain From Drosophila In Solution By 1h Nuclear Magnetic Resonance Spectroscopy Length = 68 Back     alignment and structure
>pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An Antennapedia Homeodomain-Dna Complex Length = 68 Back     alignment and structure
>pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex Length = 62 Back     alignment and structure
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1 From Homo Sapiens Length = 71 Back     alignment and structure
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 81 Back     alignment and structure
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Barh-Like 1 Length = 80 Back     alignment and structure
>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox Protein Nkx-3.1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr6470a Length = 69 Back     alignment and structure
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With Dna Length = 63 Back     alignment and structure
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 97 Back     alignment and structure
>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES Length = 77 Back     alignment and structure
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 93 Back     alignment and structure
>pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective Protein) Length = 80 Back     alignment and structure
>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 77 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 2e-30
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 3e-15
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 1e-14
3a01_A93 Homeodomain-containing protein; homeodomain, prote 2e-14
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 2e-14
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 3e-14
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 4e-14
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 5e-14
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 6e-14
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 7e-14
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 1e-13
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 2e-13
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 3e-13
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 3e-13
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 4e-13
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 4e-13
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 4e-13
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 7e-13
1e3o_C160 Octamer-binding transcription factor 1; transcript 7e-13
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 1e-12
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 1e-12
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 2e-12
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 2e-12
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 2e-12
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 2e-12
3d1n_I151 POU domain, class 6, transcription factor 1; prote 2e-12
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 3e-12
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 5e-12
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 6e-12
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 3e-11
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 3e-11
2xsd_C164 POU domain, class 3, transcription factor 1; trans 4e-11
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 4e-11
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 6e-11
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 7e-11
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 8e-11
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 9e-11
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 1e-10
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 2e-10
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 2e-10
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 4e-10
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 3e-09
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 3e-08
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 3e-08
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 4e-08
1uhs_A72 HOP, homeodomain only protein; structural genomics 4e-08
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 9e-08
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 5e-07
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 1e-06
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 1e-06
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 1e-06
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 3e-06
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 4e-06
3a02_A60 Homeobox protein aristaless; homeodomain, developm 7e-06
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 2e-05
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 2e-05
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 9e-05
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 4e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 4e-04
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 7e-04
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
 Score =  109 bits (274), Expect = 2e-30
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 93  QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149
            P+ K  ++     FLE+ F  +  L  + K ++AK  G+ P QV +WF N+R R K
Sbjct: 5   SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68 Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77 Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Length = 37 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.77
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.77
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.77
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.76
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.76
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.76
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.76
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.76
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.76
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.76
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.75
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.75
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.75
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.75
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.75
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.75
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.75
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.75
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.75
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.74
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.74
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.74
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.74
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.74
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.74
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.74
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.74
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.74
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.73
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.73
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.73
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.73
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.73
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.73
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.73
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.73
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.73
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.73
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.73
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.72
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.72
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.71
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.71
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.71
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.71
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.71
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.7
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.7
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.7
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.7
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.69
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.69
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.68
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.68
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.68
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.68
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.67
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.67
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.66
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.65
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.65
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.65
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 99.64
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.64
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.63
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.63
2e19_A64 Transcription factor 8; homeobox domain, structura 99.62
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.62
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.61
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.61
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.58
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.57
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 99.4
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 99.38
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.37
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 99.28
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 99.24
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 98.89
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 94.17
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 89.79
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 89.22
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 88.21
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 87.97
2jn6_A97 Protein CGL2762, transposase; GFT PSI-2, protein s 87.78
2wt7_B90 Transcription factor MAFB; transcription, transcri 85.53
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 81.77
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
Probab=99.77  E-value=3.5e-19  Score=138.06  Aligned_cols=62  Identities=24%  Similarity=0.450  Sum_probs=58.0

Q ss_pred             cCCCCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHHHH
Q 019954           91 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ  152 (333)
Q Consensus        91 ~~~~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Krkq  152 (333)
                      .+++++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+++
T Consensus        15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~   76 (80)
T 2da3_A           15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG   76 (80)
T ss_dssp             CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence            35667788899999999999999999999999999999999999999999999999999864
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 2e-17
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 4e-17
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 5e-17
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 7e-17
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 8e-17
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 8e-17
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 1e-15
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 2e-15
d1vnda_77 a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi 2e-15
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 2e-15
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 3e-15
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 3e-15
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 3e-15
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 6e-15
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 9e-15
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 1e-14
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 1e-14
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 2e-14
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 3e-14
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 5e-14
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 5e-14
d1ig7a_58 a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu 5e-14
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 1e-13
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 2e-13
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 2e-13
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 3e-12
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 3e-12
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 7e-12
d2ecca176 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H 1e-11
d2cufa182 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM 1e-10
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 5e-10
d1lfba_78 a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN 3e-09
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (180), Expect = 2e-17
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 96  KKRR--LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 153
           ++ R   T +Q++ LEK FE  +  +   + +LA  + L   ++ +WF NRRA+W+ ++ 
Sbjct: 2   QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61

Query: 154 EKD 156
            ++
Sbjct: 62  LRN 64
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.8
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.8
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.79
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.79
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.79
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.79
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.79
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.78
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.77
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.76
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.76
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.76
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.76
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.76
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.75
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.73
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.72
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.72
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.72
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.71
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.7
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.7
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.68
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.66
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.66
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.63
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.62
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.62
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.59
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.59
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.56
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.49
d1hlva166 DNA-binding domain of centromere binding protein B 89.79
d2jn6a189 Uncharacterized protein Cgl2762 {Corynebacterium g 81.28
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein prh
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-20  Score=135.96  Aligned_cols=57  Identities=46%  Similarity=0.715  Sum_probs=54.8

Q ss_pred             CCCCcccChHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCchhhhhhhhhhHHHHHH
Q 019954           94 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT  150 (333)
Q Consensus        94 ~rkR~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr  150 (333)
                      ++.|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+||
T Consensus         1 k~~R~~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk   57 (57)
T d2e1oa1           1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR   57 (57)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence            467889999999999999999999999999999999999999999999999999986
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure