Citrus Sinensis ID: 019989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEEcEEEccHcHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHcHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MDAARKKAIFRAKLNAQkkekrinsplvrynefdqpvcrVCDVvlksdsqwdaHQASRKHHEAIKNikagatgnntrvvsdaakpeagvdssrsesgsasqnaELENsaklgkarppsvlpsnffdnqevkrpktdsvklvdpdstkpsgvsaktQALKSVVLEnemdelpngnavhaekgqpfkehpekskqnAGSEAKQikgalpegffdnkdADLLargikpvkpdvkDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASsrsaksrgssevarkeppkeelssdddseeiFAVDWRAQHL
Flexible Loop (DISEMBL)
mdaarkkaifraklnaqkkekrinsplvrynefdqpvCRVCDVVLKSDSQWDAHQASRKHheaiknikagatgnntrvVSDAAkpeagvdssrsesgsasqNAELENSAKLGKARPPSVLpsnffdnqevkrpktdsvklvdpdstkpsgvsaktqALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLArgikpvkpdvkdEYKEYEKLIQEDLKQVDDRLEEEEIDAAEmieeyesvdqktyrEKVEALRkkkkeweassrsaksrgssevarkeppkeelssdddseeifAVDWRAQHL
Low Complexity Region (SEG)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLeeeeidaaemieeyeSVDQKTYREKVEALRKKKKEWEassrsaksrgssEVARKEPPKeelssdddseeIFAVDWRAQHL
Disordered region (IsUnstruct)
************************SPLVRYNEFDQPVCRVCDVVLKSDS************************************************************************************************************************************************************************LLARG**************************************************************************************************************
Disordered Region (DISOPRED)
**************************LVRYNEFDQPVCRVCDVVLKSDSQWDAHQAS********************************************************************************************************************************************************FFDNKDADLLA****************************************EMIEEYESVDQKTYREKVE*******************************************FAVDWRAQH*
Disordered Region (DISEMBL)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQ***********EAIKNIKAGATGNNTRVVSDA***************************KLGKARPPSVLPSNFFDNQEVKRPKTDSVKLV*************TQALKSVVLENEMDELPNGNAVHAEKGQ******************QIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYRE******************************************SEEIFAVDWRAQHL
Disordered Region (DISPRO)
*******************EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG************************************************************************************************************************************KGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSR***************************EIFAVDWRAQHL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q8R1N0	363	Zinc finger protein 830 O	yes	no	0.912	0.834	0.264	2e-11
Q6DJ13	357	Zinc finger protein 830 O	yes	no	0.906	0.843	0.250	2e-10
Q63ZM9	356	Zinc finger protein 830 O	N/A	no	0.777	0.724	0.221	6e-09
Q3MHS2	370	Zinc finger protein 830 O	yes	no	0.921	0.827	0.239	7e-09
Q96NB3	372	Zinc finger protein 830 O	yes	no	0.150	0.134	0.34	0.0004

>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 52/355 (14%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K
Sbjct: 24  LMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK 83

Query: 69  A--GAT-GNNTRVVSDAAKPEAG-VDSSRSESGSASQNAELE-----NSAKLGKAR-PPS 118
              GAT G +T  V  A K  A  V+S  ++   AS   +++     +SA L  AR  PS
Sbjct: 84  GAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAAPS 143

Query: 119 -----VLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNG 173
                +LP   +D++E +  +    +  D     P     K  +L S   E   + LPN 
Sbjct: 144 KPGLGLLPD--YDDEEEEEEEGGGEERRDSSKHLPDA-QGKEHSLAS-PRETTSNVLPN- 198

Query: 174 NAVHAEKGQPFKEHPEKSK--QNAGSEAK------------QIKGALPEGFFDNKDADLL 219
                    PF  +P K+    ++GS  K                ALPEGFFD+ + D  
Sbjct: 199 --------DPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAK 250

Query: 220 ARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK--TYREK 277
            R +   K  +  E+ E++K +++ +  + + +  EE +   +  +   +D++   YR +
Sbjct: 251 VRKVDAPKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-R 308

Query: 278 VEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEELSSDDDSE--EIFAVDWRAQ 330
           VE LR ++ E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 309 VEKLRNRQDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 359

Acts as an important regulator of the cell cycle in the preimplantation embryo by controlling different aspects of M phase.
Mus musculus (taxid: 10090)

>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 168/375 (44%), Gaps = 74/375 (19%)

Query: 2   DAARKKAI----FRAKLNAQKK----EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDA 53
           DA +KK +     R  + A+++    +KRI SPL +YN     +C VC++ +KS+  W A
Sbjct: 3   DAGKKKLVQQEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPA 62

Query: 54  HQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGK 113
           H   ++H E +  +K    G+   + S + K +      R   GS  +N E     K  +
Sbjct: 63  HILGKQHKEKVAELK----GSKANISSPSNKVQLHHIMKR--KGSEPENQE-SKRIKGTE 115

Query: 114 ARPPSV---LPSNFFDNQEVKRP-----KTDSVKL------------------VDPDST- 146
            +P ++   LP  FF+ +E         K  S+KL                  V+  ST 
Sbjct: 116 DQPTALKTKLPEGFFETEETSSAKHAAEKAPSLKLLAGDYEDDDEVEGEEYENVNEASTS 175

Query: 147 --KPSGV-----SAKTQALKSVVLENEMDELPN-GNAVHAEKGQPFKEHPEKSKQNAGSE 198
             KP+ +     ++    L +   E++M  + + G+ + A+  +   E  + + +     
Sbjct: 176 LQKPAEIPLPPPTSSADRLPADFFESKMPLVSHSGSVLKADIQEKIVERKDNTAE----- 230

Query: 199 AKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEID 258
                 ALPEGFFD+ +AD   R +   K  +  E++E++K I++ +  V D +  EE +
Sbjct: 231 ------ALPEGFFDDPEADAKVRKVDAPKDQMDKEWEEFQKEIRQ-VNSVSDAIVAEEDE 283

Query: 259 AAEMIEEYESVDQK--TYREKVEALRKKKKEWE-ASSRSAKSRGSSEVARKEPPKEELSS 315
              +  + + +D++   YR +VE LR  K   + A     KS+ S +       +EE+ S
Sbjct: 284 EGRLDRQIDEIDEQIECYR-RVEHLRDLKDTLQDAKMEVLKSKSSKKW------QEEIGS 336

Query: 316 DDDSE--EIFAVDWR 328
           DD+     +   +WR
Sbjct: 337 DDEETLPSLLYKNWR 351

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus tropicalis (taxid: 8364)

>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 129/316 (40%), Gaps = 58/316 (18%)

Query: 7   KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
           + + +AK      +KRI SPL +YN      C VC+ ++KS+  W AH   ++H E +  
Sbjct: 16  RKLMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAE 75

Query: 67  IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV----LPS 122
           +K      ++        P   ++  R      S+  + E+    G    PS     LP 
Sbjct: 76  LKGTKATTSS--------PSNTIEYPRITKRKGSEPEKQESKRTKGSEDHPSASTTKLPE 127

Query: 123 NFFDNQEV------------------------------KRPKTDSVKLVDPDSTKPSGVS 152
            FF+ ++                               +  K  S  L+ P        +
Sbjct: 128 EFFEKEKTSSAGNAPSLKLLAGDYEDVDDDDAEEGEEYENAKEASSSLLKPAEIPLPPPT 187

Query: 153 AKTQALKSVVLENEMDELPN-GNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFF 211
           +    L +   EN+M  + + G+ + A+  +   E  E + +           ALPEGFF
Sbjct: 188 SSADNLPADFFENKMPLVSHSGSVLKADIQEKIVERKENTAE-----------ALPEGFF 236

Query: 212 DNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQ 271
           D+ + D   R +   K  +  E++E++K I++ +  V + +  EE +   +  + + +D+
Sbjct: 237 DDPEVDAKVRKVDAPKDQMDKEWEEFQKEIRQ-VNTVSEAIVAEEDEEGRLDRQIDEIDE 295

Query: 272 --KTYREKVEALRKKK 285
             + YR +VE LR +K
Sbjct: 296 QIQCYR-RVEHLRDRK 310

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus laevis (taxid: 8355)

>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 156/359 (43%), Gaps = 53/359 (14%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K
Sbjct: 24  LMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK 83

Query: 69  A--GATGN-------------NTRVVS-DAAKPEAGVDSSRSESGSASQNAELEN--SAK 110
              GAT                T V S DA K +A VD  +  + ++S N E     + +
Sbjct: 84  GAKGATQGPSAGTAPQPTKRKTTDVESQDAKKAKASVDQVQPSTSASSANFEKSGKEATR 143

Query: 111 LGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKP-SGVSAKTQALKSVVLENEMDE 169
           +  ++    L  ++ + +E +  +         DS+K       +  +L S   E   + 
Sbjct: 144 VASSKTGLGLLPDYEEEEEEEEEEELGGGEERRDSSKHLPDAQGREHSLAS-PRETTSNV 202

Query: 170 LPNGNAVHAEKGQPFKEHPEKSKQ--NAGSEAK------------QIKGALPEGFFDNKD 215
           LPN          PF  +P K+    ++GS  K                ALPEGFFD+ +
Sbjct: 203 LPN---------DPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPE 253

Query: 216 ADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQK--T 273
            D   R +   K  +  E+ E++K +++ +  + + +  EE +   +  +   +D++   
Sbjct: 254 VDAKVRKVDAPKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIEC 312

Query: 274 YREKVEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEELSSDDDSE--EIFAVDWRAQ 330
           YR +VE LR ++ E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 313 YR-RVEKLRNRQDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 366

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Rattus norvegicus (taxid: 10116)

>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 21 KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG 70
          KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K  
Sbjct: 36 KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGA 85

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
24461854	344	CTV.12 [Citrus trifoliata]	1.0	0.965	0.886	1e-166
224065088	331	predicted protein [Populus trichocarpa]	0.978	0.981	0.585	3e-87
357491925	325	Zinc finger protein [Medicago truncatula	0.966	0.987	0.574	6e-87
356499554	326	PREDICTED: zinc finger protein 830-like	0.954	0.972	0.574	3e-86
356559669	326	PREDICTED: zinc finger protein 830-like	0.954	0.972	0.577	2e-82
255558696	375	Coiled-coil domain-containing protein, p	0.975	0.864	0.524	2e-81
388512271	304	unknown [Lotus japonicus]	0.897	0.980	0.553	1e-80
449460630	305	PREDICTED: zinc finger protein 830-like	0.912	0.993	0.532	6e-77
225443180	328	PREDICTED: zinc finger protein 830-like	0.882	0.893	0.567	3e-73
297832920	313	hypothetical protein ARALYDRAFT_477529 [	0.918	0.974	0.511	9e-68

>gi|24461854|gb|AAN62341.1|AF506028_8 CTV.12 [Citrus trifoliata]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/344 (88%), Positives = 317/344 (92%), Gaps = 12/344 (3%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH
Sbjct: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVL 120
           HEAIKNIKAGATGNN+R+VSDAAKPEAG +SSRSES SASQN E+E+SAKLGKAR  SVL
Sbjct: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNVEIESSAKLGKARTSSVL 120

Query: 121 PSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEK 180
           PSNFFD+QEVKRPKTDSVKLVDPDS K SGVSAKTQA+KSVVLENEMDELPNGNAV A+K
Sbjct: 121 PSNFFDSQEVKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180

Query: 181 GQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKL 240
           GQP KEHPEKSKQN  SEAKQIKGALPEGFFDNK+ADLLARGIKPVKPDVKDEYKEYEKL
Sbjct: 181 GQPLKEHPEKSKQNVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240

Query: 241 IQEDLKQVDDRLEEEE------------IDAAEMIEEYESVDQKTYREKVEALRKKKKEW 288
           IQEDLKQVDDR EEEE            IDAAEMIEEYESVDQKT+ E+VEALRKKK EW
Sbjct: 241 IQEDLKQVDDRFEEEENINNLKWTCEMQIDAAEMIEEYESVDQKTFSERVEALRKKKMEW 300

Query: 289 EASSRSAKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
           EA+SRSAKSRGSSEVARKEP KEELSSDDDSEEIFAVDWRAQHL
Sbjct: 301 EAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 344

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065088|ref|XP_002301664.1| predicted protein [Populus trichocarpa] gi|222843390|gb|EEE80937.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 198/338 (58%), Positives = 250/338 (73%), Gaps = 13/338 (3%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAA+KKA+FR+KLNAQ+KEK+I+SPLVRYNE DQPVCRVCDVVLKS+ QWDAHQASRKH
Sbjct: 1   MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNTRVVSDA-AKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
            EAI NIKA A     + V++A ++P A    S+    +  Q A+ E+  +L   RP S 
Sbjct: 61  IEAINNIKANAA--RLKNVNNAKSEPSAVSTGSKHADNAQLQVAKSESLTQL--PRPQSA 116

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDST-KPSGVSAKTQALKSVVLENEMDELPNGNAVHA 178
           LP +FFDN+E KR KTD+VK  + DS+ KP+G S +T+A +S+ LE+E   LP+GN +  
Sbjct: 117 LPPDFFDNKEAKRQKTDAVKPSELDSSLKPAG-SIQTKATRSL-LEDETGGLPSGNHLQT 174

Query: 179 EKGQPFK----EHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
           +  +  +           + + S+AKQ +GALPEGFFDNK+ADL ARGIKPVKPDV DEY
Sbjct: 175 KNTEDARGITNTPTPTPTEISDSQAKQGQGALPEGFFDNKEADLRARGIKPVKPDVNDEY 234

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRS 294
           KE+EKLIQ DL++VDDRLEEEE+DAAE IEE E+++QK YRE+VE L+KKK E  A+  S
Sbjct: 235 KEFEKLIQGDLREVDDRLEEEEVDAAETIEEAETLEQKAYRERVELLKKKKMELMAARAS 294

Query: 295 AKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
            +S+G SEVA KE   E+ SSDDDS+  FAVDWRAQHL
Sbjct: 295 ERSKG-SEVASKESSHEDSSSDDDSDVNFAVDWRAQHL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491925|ref|XP_003616250.1| Zinc finger protein [Medicago truncatula] gi|355517585|gb|AES99208.1| Zinc finger protein [Medicago truncatula]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 236/336 (70%), Gaps = 15/336 (4%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI+SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKDKRIDSPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           H EAI N+KA A G   +     AKP+  +  ++ E  S SQ    ++  ++ K +  SV
Sbjct: 61  HREAITNLKANAAGLTKQ---SNAKPD--IPKAKPEQPSGSQFKIPKSPQEVPKPQSSSV 115

Query: 120 LPSNFFDNQEVKRPKT--DSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDEL-PNGNAV 176
           LP +FFDN + K+ ++  DSV LVD D  +  G SA++    SV    E D    N N  
Sbjct: 116 LPPDFFDNNDAKKTRSEKDSVHLVDSDLGRNMGASAQS----SVSNSKEKDHFHGNNNPT 171

Query: 177 HAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKE 236
            ++  Q   E  + S +   +E KQ KGALPEGFFDNK+ADL ARGIK VKPDVKDEYKE
Sbjct: 172 QSKVNQATVETKQTSVKTIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKE 231

Query: 237 YEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAK 296
           +EKLIQEDL++VDDR+EEEEIDAAEMIEE ESV+Q+  +EKVE L++K+ E +AS   AK
Sbjct: 232 FEKLIQEDLQEVDDRMEEEEIDAAEMIEEAESVEQRNLKEKVEMLKRKRLELKAS--KAK 289

Query: 297 SRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
              SS V  KE   E+ SSDD+S E FAVDWRAQHL
Sbjct: 290 LSKSSGVVTKEARHEDSSSDDESGENFAVDWRAQHL 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499554|ref|XP_003518604.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 196/341 (57%), Positives = 234/341 (68%), Gaps = 24/341 (7%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI SPLVRYNEFD PVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKKKRIESPLVRYNEFDLPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDA----AKPEAGVDSSRSESGSASQNAELENSAKL 111
           H EAI N+KA A G    N  + V+D     AKPE  +DS         Q+   E S  +
Sbjct: 61  HREAISNLKANAAGLTQHNIAKPVADTSFFKAKPEHSLDS---------QSKAPEASQVV 111

Query: 112 GKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
            K +  SVLP  FFD+      KT S  LVD D  + +GVSA++Q L    LE E     
Sbjct: 112 SKPQSSSVLPPGFFDDS--NSGKTRSEHLVDSDLGRKAGVSAQSQVLN---LEKEKGHFH 166

Query: 172 NGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVK 231
           + NA  +  GQ   E  +   ++  +E +QIKG LPEGFFDNK+ADL ARGIK VKPDVK
Sbjct: 167 DNNAAKSNVGQAAMESRQTPVKSTDTEIQQIKGTLPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEAS 291
           DEYKE+EKLIQEDL++VDDRLEEEEIDAAEMIEE E V+QK   EKVE L+K++ E +A+
Sbjct: 227 DEYKEFEKLIQEDLREVDDRLEEEEIDAAEMIEEEEVVEQKILSEKVEMLKKRRLELKAA 286

Query: 292 SRSAKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
           + +AK   SSE+  KE  +EE SSDD+SE   AVDWRAQHL
Sbjct: 287 N-AAKRSKSSEIVAKESRREEPSSDDESEGNLAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559669|ref|XP_003548121.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 197/341 (57%), Positives = 237/341 (69%), Gaps = 24/341 (7%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDA----AKPEAGVDSSRSESGSASQNAELENSAKL 111
           H EAI N+KA A G    NN + V+D+    AKPE  +DS         Q    E S  +
Sbjct: 61  HREAISNLKANAAGLTQHNNAKPVADSSFSKAKPEHSLDS---------QFKPPEASQLV 111

Query: 112 GKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
            K +  SVLP  FFD+ +    KT S  LVD D  + +GVSAK+Q      LE +  +  
Sbjct: 112 SKPQSSSVLPPGFFDDSD--SGKTRSEHLVDSDLGRKAGVSAKSQVSN---LEKDKGQFD 166

Query: 172 NGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVK 231
           + N   +   Q   +  + S +   +E +Q+KG LPEGFFDNK+ADL ARGIK VKPDVK
Sbjct: 167 DNNVAKSNVSQATTDSRQTSVKTTDTEIQQVKGILPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEAS 291
           DEYKE+EKLIQEDL++VDDRLEEEEIDAAEMIEE E V+QK   EKVE L+K++ E +A+
Sbjct: 227 DEYKEFEKLIQEDLQEVDDRLEEEEIDAAEMIEEEEVVEQKMLSEKVEMLKKRRLELKAA 286

Query: 292 SRSAKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
           + +AK   SSE+  KE  +EE SSDD+SEE FAVDWRAQHL
Sbjct: 287 N-AAKRSKSSEIVAKESRQEESSSDDESEENFAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558696|ref|XP_002520372.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223540419|gb|EEF41988.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 201/383 (52%), Positives = 242/383 (63%), Gaps = 59/383 (15%)

Query: 1   MDAA-RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDAA +KKA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCR+C+VVLKS+S W AHQASRK
Sbjct: 1   MDAAAKKKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRICNVVLKSESLWAAHQASRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSR--SESGSASQNAELENSAKLGKARPP 117
           HHEAI NIK  A   + RV  ++ KPEA  +++R   E+ +   + + E S +L K +  
Sbjct: 61  HHEAINNIKNAA--GHLRV--NSTKPEAHKENTRPKYENDAELHDTKSEPSTRLTKPQSS 116

Query: 118 SVLPS-------------------------------------------NFFDNQEVKRPK 134
           SVLP+                                           NFFD+ E KR K
Sbjct: 117 SVLPADFFDTHKTETTLPKHAHYVELGDKMPEPSSKSSKHQSSSVLPPNFFDDPEAKRQK 176

Query: 135 TDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQN 194
            D+ K V+ +S K SG SA T+     +LE+EMD   +GN +  +     +E        
Sbjct: 177 IDTAKSVNSNSHKKSGNSAYTKV--ESLLEDEMDG-SSGNDMETKNTGRAREFVHTVDIT 233

Query: 195 AGSE-AKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLE 253
            GS   KQ+KGALPEGFFD+K+ADL ARGIK VKPDVKDEYKE+EKLIQEDL++VDDRLE
Sbjct: 234 GGSRYMKQVKGALPEGFFDDKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDDRLE 293

Query: 254 EEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEEL 313
           EEEIDAAEMIEE E+V+QKTYREKVE LRKKK E  A +RSAK R  S V+ K       
Sbjct: 294 EEEIDAAEMIEEAETVEQKTYREKVEFLRKKKMELIA-ARSAKRRRDSGVSGKMSSSNAE 352

Query: 314 SSD----DDSEEIFAVDWRAQHL 332
           SS     DD  E FAVDWRAQHL
Sbjct: 353 SSTDDEDDDDNENFAVDWRAQHL 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512271|gb|AFK44197.1| unknown [Lotus japonicus]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 187/338 (55%), Positives = 221/338 (65%), Gaps = 40/338 (11%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESNWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKAR 115
           H EAI N+KA A G    NN +     AKPE           S SQ    ++S ++ K +
Sbjct: 61  HREAISNLKANAAGLTQNNNAKREITKAKPE---------QPSVSQFKMPQSSQEVPKPQ 111

Query: 116 PPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNA 175
             SVLP NFFD+   ++  ++                          LENE       N 
Sbjct: 112 SSSVLPPNFFDDSHARKASSEKD------------------------LENEKGNFHANNT 147

Query: 176 VHAE-KGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
             ++   Q   E  + S + A  E K +K ALPEGFFDNK+ADL ARGIKPV+PD+KDEY
Sbjct: 148 AQSKVSSQAAMETRQTSDKTADKETKPVKEALPEGFFDNKEADLRARGIKPVRPDIKDEY 207

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRS 294
           KE+EKLIQEDLK+VDDR EEEEIDAAEMIEE ESV+QK +REKVE L++K+ E + +S+S
Sbjct: 208 KEFEKLIQEDLKEVDDRFEEEEIDAAEMIEEAESVEQKNFREKVELLKRKRLE-QKASKS 266

Query: 295 AKSRGSSEVARKEPPKEELSSDDDSEEIFAVDWRAQHL 332
           AK   SSEV  KE   EE SSDD+S   FAVDWRAQHL
Sbjct: 267 AKRSKSSEVVTKESRHEESSSDDESGGNFAVDWRAQHL 304

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460630|ref|XP_004148048.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus] gi|449516880|ref|XP_004165474.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 178/334 (53%), Positives = 230/334 (68%), Gaps = 31/334 (9%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A++KA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCRVCD+VLKS++ WDAHQ+SR+
Sbjct: 1   MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           HHEAI+N+KA A G +  V +  A+  A + ++R       +      S++L K    SV
Sbjct: 61  HHEAIQNLKASAAGRSG-VENIKAEAPAELPNNRPIDSKEKKEMTGGTSSELPKRPSSSV 119

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAE 179
           LPS+FFD Q  KR KT   K ++ DS   SG  A++Q +            P  + ++  
Sbjct: 120 LPSDFFD-QNAKRLKTG--KDIETDSR--SGSIAQSQVI------------PKASDLN-- 160

Query: 180 KGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEK 239
                    +KS  NAGSE KQIKGALPEGFFD+K+ADL A GIK VKPDVKDEYKE+EK
Sbjct: 161 ---------KKSSMNAGSEGKQIKGALPEGFFDDKEADLRAHGIKLVKPDVKDEYKEFEK 211

Query: 240 LIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAKSRG 299
           LIQEDL++VDDRLEEEEIDAAEMIEE E+++QK YRE+VE L++KK E ++   + +SR 
Sbjct: 212 LIQEDLQEVDDRLEEEEIDAAEMIEEAETLEQKAYRERVELLKRKKIELKSKKSAEQSRA 271

Query: 300 SSEVARKEPPKEELSSDDDSEEI-FAVDWRAQHL 332
             ++  K+   +  SSDDD  +  + VDWRAQHL
Sbjct: 272 EPQIPTKDSQVDYSSSDDDDSDTNYTVDWRAQHL 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443180|ref|XP_002267521.1| PREDICTED: zinc finger protein 830-like [Vitis vinifera]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/312 (56%), Positives = 218/312 (69%), Gaps = 19/312 (6%)

Query: 30  YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDAAKPEAGV 89
           YNEFDQPVCRVCDV+LKS+S WDAHQASRKHHEAIKN+KA A G  TR  ++ AKPEA  
Sbjct: 27  YNEFDQPVCRVCDVILKSESLWDAHQASRKHHEAIKNVKANAAGL-TR--ANNAKPEA-- 81

Query: 90  DSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKT--DSVKLVDPDSTK 147
              + ES +   NA  E S  L KA+  S LP++FFDN   K+ K+  D VK +DPDS  
Sbjct: 82  --PKPESSTVLSNATSEPSMNLQKAQLSSGLPADFFDNHVTKKQKSGNDDVKFLDPDSYN 139

Query: 148 PSG--VSAKTQALKSVVLENEMDELPNGNAVHAEK-GQPFKEHPEKSKQNAG----SEAK 200
            +G   SA+TQ+++ +  +N +D L   ++ H+EK G+    H     Q +G    SE K
Sbjct: 140 KTGGSASAQTQSMEPLESKNNLDGL---SSSHSEKMGKSGIRHARDLTQTSGKIVGSETK 196

Query: 201 QIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLEEEEIDAA 260
           ++KGALPEGFFDNKDADL ARGI PVKPDVKDEYKE+EKLIQEDLK+VD+RLEEEE DAA
Sbjct: 197 EVKGALPEGFFDNKDADLRARGIVPVKPDVKDEYKEFEKLIQEDLKEVDNRLEEEEFDAA 256

Query: 261 EMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEELSSDDDSE 320
           EMIEE ESV+QK Y EKVE L+KKK E +A+    +S+      + +  K + SS DDS+
Sbjct: 257 EMIEEAESVEQKVYWEKVEMLKKKKLELKAARSGRRSKDPEVRGKGQSSKGDSSSGDDSD 316

Query: 321 EIFAVDWRAQHL 332
             F VDWRAQHL
Sbjct: 317 GNFTVDWRAQHL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832920|ref|XP_002884342.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata] gi|297330182|gb|EFH60601.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 222/340 (65%), Gaps = 35/340 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FR+KLNA+KK+ RI+SPLVRYNE DQPVCRVC+VVLKS+S WD HQASRK
Sbjct: 1   MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query: 60  HHEAIKNIKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV 119
           HHEAI N+KA A G     V    KP            + ++ A+ E  AK  K++  S 
Sbjct: 61  HHEAIDNLKASAAG-----VQRGTKP------------AETRPAKTEALAKSSKSQTSSG 103

Query: 120 LPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNG---NAV 176
           LP NFF+N E  R +      V+P  +K   +    Q + S    N    LP G   N  
Sbjct: 104 LPPNFFENHEPARAE------VEPAISK--NIEQSKQTIGSET-NNSKGPLPAGFFDNQK 154

Query: 177 HAEKGQPFKEHPEKSK-QNAGSEAKQI-KGALPEGFFDNKDADLLARGIKPVKPDVKDEY 234
                      P++S+ Q  GSE K + KG LP GFFDNK+ADLLARGIK VKPD+KDEY
Sbjct: 155 TDSSNTKTTSEPKQSQTQTTGSETKSVVKGNLPTGFFDNKEADLLARGIKLVKPDIKDEY 214

Query: 235 KEYEKLIQEDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRS 294
           KE+EKLIQ+DL+ VD R+EEEE+DAAE IEE E  +Q++Y+EKVE L+++K+E +A +R 
Sbjct: 215 KEFEKLIQDDLQVVDSRMEEEEVDAAETIEEEEQREQRSYKEKVEILKRRKRELKA-ARL 273

Query: 295 AKSRGSSEVARKEPPK--EELSSDDDSEEIFAVDWRAQHL 332
           AK   +SE + K+P K  EE  SD++ +E  AVDWRAQHL
Sbjct: 274 AKRSKTSEGSVKKPKKTEEESLSDEEDDEDSAVDWRAQHL 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2075422	313	AT3G02860 [Arabidopsis thalian	0.734	0.779	0.343	1.1e-30
MGI|MGI:1914233	363	Zfp830 "zinc finger protein 83	0.954	0.873	0.237	5.3e-18
UNIPROTKB|I3L6H7	367	ZNF830 "Uncharacterized protei	0.319	0.288	0.268	6.7e-13
ZFIN|ZDB-GENE-040426-1834	326	zgc:77398 "zgc:77398" [Danio r	0.746	0.760	0.216	1.2e-07
UNIPROTKB|A3KN01	373	ZNF830 "Uncharacterized protei	0.674	0.600	0.240	2.8e-07
UNIPROTKB|E2RNS2	371	ZNF830 "Uncharacterized protei	0.340	0.304	0.285	4.6e-07
UNIPROTKB|Q96NB3	372	ZNF830 "Zinc finger protein 83	0.566	0.505	0.228	1.1e-05
RGD|1562573	370	Zfp830 "zinc finger protein 83	0.382	0.343	0.255	2.4e-05
UNIPROTKB|F1NPL1	368	ZNF830 "Uncharacterized protei	0.506	0.456	0.247	4e-05

TAIR|locus:2075422 AT3G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 88/256 (34%), Positives = 128/256 (50%)

Query:    81 DAAKPEA-GVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVK 139
             D+ K  A GV   R    + ++  ++E  AK   ++  S LP NFF+N+E  R + +  K
Sbjct:    66 DSLKASAAGVQ--RGSKPAETRPTKIEALAKSSNSQTSSGLPPNFFENREPARAEVEPAK 123

Query:   140 LVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEA 199
               + + +K + + ++T   K  +     D     ++      +P     +   Q  G E 
Sbjct:   124 SKNLEQSKHT-IGSETNKSKGPLPAGFFDNQKTDSSNTKTTSEP----KQSQTQTTGPET 178

Query:   200 K-QIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLXXXXXX 258
             K  + G LP GFFDNK+ADLLA GIK VKPD+KDEYKE+EKLIQ+DL+ VD R+      
Sbjct:   179 KPMVNGNLPTGFFDNKEADLLAHGIKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEEVD 238

Query:   259 XXXXXXXXXSVDQKTYREKVEALRKKKKEWEXXXXXXXXXXXXEVARKEPPKXXXXXXXX 318
                        +Q++Y+EKVE L++KK E +            E + K+P K        
Sbjct:   239 AAETIEEEEQREQRSYKEKVEILKRKKMELKAARLAKRSKTS-EGSVKKPKKTEEESPSD 297

Query:   319 XXXI--FAVDWRAQHL 332
                    AVDWRAQHL
Sbjct:   298 EEDDEDSAVDWRAQHL 313

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1914233 Zfp830 "zinc finger protein 830" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 82/345 (23%), Positives = 140/345 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKA--GAT-GNNTRVVSDAAKPEA-GVDSSRSESGSASQNAELE-----NSAKLGKARP- 116
             +K   GAT G +T  V  A K  A  V+S  ++   AS   +++     +SA L  AR  
Sbjct:    82 LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query:   117 PS-----VLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELP 171
             PS     +LP   +D++E +  +    +  D     P     K  +L S   E   + LP
Sbjct:   142 PSKPGLGLLPD--YDDEEEEEEEGGGEERRDSSKHLPDA-QGKEHSLASP-RETTSNVLP 197

Query:   172 NGNAVHAEKGQPFKEHP---EKSK--QNAGSEAKQIKGALPEGFFDNKDADLLARGIKPV 226
             N          P   H    EK++  +      +    ALPEGFFD+ + D   R +   
Sbjct:   198 NDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAP 257

Query:   227 KPDVKDEYKEYEKLIQEDLKQVDDRLXXXXXXXXXXXXXXXSVDQKTY-REKVEALRKKK 285
             K  +  E+ E++K +++ +  + + +                +D++     +VE LR ++
Sbjct:   258 KDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYRRVEKLRNRQ 316

Query:   286 KEWEXXXXXXXXXXXXEVARKEPPKXXXXXXXXXXXIFAVDWRAQ 330
              E +            E+ +KE              + + DWR +
Sbjct:   317 DEIKNKLKEVLTIK--ELQKKEEENVDSDDEGELQDLLSQDWRVK 359

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

UNIPROTKB|I3L6H7 ZNF830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 32/119 (26%), Positives = 56/119 (47%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNF 124
             +K GA         +A +   G  + R    + SQ+A+   ++ + + +P  S LP+NF
Sbjct:    82 LK-GA--------KEATQ---GPSAKRKAPDAESQDAKRVKASPVPQVQPSTSALPTNF 128

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

ZFIN|ZDB-GENE-040426-1834 zgc:77398 "zgc:77398" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 59/273 (21%), Positives = 111/273 (40%)

Query:    19 KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRV 78
             ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     +T  
Sbjct:    31 RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTPA 90

Query:    79 VSD--AAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSV-LPSNFFDNQEVKRPKT 135
              +   A  P A   SS +   +A         AKL       + L +  +D+ +      
Sbjct:    91 PAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHYDDDDDDEGGA 150

Query:   136 DSVKLVDP-DSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFKEHPEKSKQN 194
                K   P DS  P+       A    +  +       G+   AE+ Q  +E PE   ++
Sbjct:   151 GERKTAPPTDSALPADFFDSGPAPAPPISHS-------GSVSKAEQ-QESQEPPENRPES 202

Query:   195 AGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRLXX 254
                        LPEGFFD+   D   R +   K  ++ E++E++K +++ +    D +  
Sbjct:   203 -----------LPEGFFDDPVRDAQVRQVDTPKDQLEREWEEFQKEMRQ-VNSASDAIVA 250

Query:   255 XXXXXXXXXXXXXSVDQKTY-REKVEALRKKKK 286
                           ++++     +VE LR K++
Sbjct:   251 EDDEEGRLERQMDEIEEQMQCLRRVEELRAKQE 283

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|A3KN01 ZNF830 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 59/245 (24%), Positives = 105/245 (42%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNFF 125
             +K GA     +  S +A P++   + R    S SQ+A+   ++ + + +P  S LP+NF 
Sbjct:    82 LK-GAK-EAAQGPSASAVPQS---TKRKAPDSESQDAKRAKASLVPQVQPSTSALPTNF- 135

Query:   126 DNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFK 185
             D    K  K  +   V     K SG+            E+E +E   G     +     +
Sbjct:   136 D----KAGKESTRATVG----KASGLGLLPDYDDE---EDEEEEKGGGGGEGKKGDACKQ 184

Query:   186 EHPEKSKQNAGSEAKQIKGA-LPEGFFDNKD--ADLLARGIKPVKPDVKDEYKEYEKLIQ 242
                 +SK+++ S +++  G+ LP  F D     A L+       K ++ ++  E  +   
Sbjct:   185 PSTSQSKEHSLSSSREATGSRLPSNFSDTNPPKAPLIPHSGSIEKAEIHEKVVERRENTA 244

Query:   243 EDLKQ 247
             E L +
Sbjct:   245 EALPE 249

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|E2RNS2 ZNF830 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 34/119 (28%), Positives = 59/119 (49%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPP-SVLPSNF 124
             +K GA    T+  S +A P++   + R    +  Q+A+   ++ L + +P  S LP+NF
Sbjct:    82 LK-GAR-EATQGPSSSAAPQS---AKRKVPDADGQDAKRLKASPLPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|Q96NB3 ZNF830 "Zinc finger protein 830" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 47/206 (22%), Positives = 80/206 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKAR-PPSVLPSNFF 125
             +K GA     +  S  +   +   S + ++  A      +   K  KA   P V PS   
Sbjct:    82 LK-GA-----KEASQGSSASSAPHSVKRKAPDAD-----DQDVKRAKATLVPQVQPSTSA 130

Query:   126 DNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAVHAEKGQPFK 185
                   +   + ++   P  +KPSG+S           E E +E  +G     +  +P  
Sbjct:   131 WTTNFDKIGKEFIRAT-P--SKPSGLSLLPDYEDEE--EEEEEEEGDGERKRGDASKPLS 185

Query:   186 EHPEKSKQNAGSEAKQIKGALPEGFF 211
             +   K + +  S  +     LP  FF
Sbjct:   186 DAQGK-EHSVSSSREVTSSVLPNDFF 210

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1562573 Zfp830 "zinc finger protein 830" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 34/133 (25%), Positives = 60/133 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKAGATGNNTRVVSDAAKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFD 126
             +K GA G  T+  S    P+    + R  +   SQ+A+ +  A + + +P +   S  F+
Sbjct:    82 LK-GAKGA-TQGPSAGTAPQP---TKRKTTDVESQDAK-KAKASVDQVQPSTSASSANFE 135

Query:   127 NQEVKRPKTDSVK 139
                 +  +  S K
Sbjct:   136 KSGKEATRVASSK 148

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0001832 "blastocyst growth" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NPL1 ZNF830 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 46/186 (24%), Positives = 76/186 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAI-- 64
             + + R K      +KRI SP  +Y       C +C   +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKKRQNADKKRIESPFAKYPRLGHLSCTLCSAPVKSELLWQTHVLGKQHRERVAE 81

Query:    65 -KNIKAGATGNNTRVVSDAAKPE-AGVDSSRSESGSASQNAELENSAKLGKARPPSVLPS 122
              K  K  A+G+     S A K + A  +S++ +    + +    +++  G       LP+
Sbjct:    82 LKGAKQAASGSAAGASSHAVKRKTADAESTQLKRSKGTDDKPHTSTSTSG-------LPA 134

Query:   123 NFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVVLENEMDELPNGNAV-H-AEK 180
             +FFD  E        +K   P    PS +S           E E  + PN ++V H  E 
Sbjct:   135 DFFDESEQNNANKQFLK--GPG---PSLLSGNYDDDDEEEEEEEEQDQPNTSSVMHKTEI 189

Query:   181 GQPFKE 186
               P +E
Sbjct:   190 PPPTRE 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.126   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       294   0.00091  115 3  11 23  0.37    35
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  203 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.62u 0.10s 29.72t   Elapsed:  00:00:02
  Total cpu time:  29.63u 0.10s 29.73t   Elapsed:  00:00:02
  Start:  Fri May 10 19:06:07 2013   End:  Fri May 10 19:06:09 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002209 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	6e-06
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.001

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 CRVCDVVLKSDSQWDAHQASRKH 60
          C +C+V   S+SQ  +H   +KH
Sbjct: 3  CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 QPVCRVCDVVLKSDSQWDAHQASRKH 60
          Q  C  CD   KS++  + H  S+KH
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG3032	264	consensus Uncharacterized conserved protein [Funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.91
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.51
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	96.74
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.71
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.69
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	96.12
PLN02748	468	tRNA dimethylallyltransferase	94.27
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	88.79
KOG4727	193	consensus U1-like Zn-finger protein [General funct	88.65
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	86.52

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.6e-60  Score=435.27  Aligned_cols=260  Identities=42%  Similarity=0.640  Sum_probs=196.7

Q ss_pred             HHHHhHHHHHHHHHHHhhhcccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhccCCCCCccccCC
Q 019989            3 AARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNTRVVSDA   82 (332)
Q Consensus         3 ~~~~ka~~R~~lr~~r~~~rI~~P~A~Y~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~~~~~~~~~~~~~~   82 (332)
                      -+++|+|||++|+..+...||++|||+||.+|+|+|+|||++|| ++||++|++||+||++|..||..+.        ..
T Consensus         3 q~~~krl~k~k~~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~--------Kv   73 (264)
T KOG3032|consen    3 QAKKKRLFKSKLNAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGS--------KV   73 (264)
T ss_pred             hHHHHHHHHHHhhccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhc--------cc
Confidence            48999999999999999999999999999999999999999999 9999999999999999999993111        01


Q ss_pred             CCCCCCCCCCCCCCCccchhhhhhhccccCCCCCCCCCCCCccCcccCCCCCcCcccccCCCCCCCCCCccccccccchh
Q 019989           83 AKPEAGVDSSRSESGSASQNAELENSAKLGKARPPSVLPSNFFDNQEVKRPKTDSVKLVDPDSTKPSGVSAKTQALKSVV  162 (332)
Q Consensus        83 a~~~~~~~k~K~~~~~~~~~k~~k~~~~~~~~~~~s~LP~dFFd~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~v~~~~~  162 (332)
                      +.+.+   .+.+..+.++..+ .+    -.+.+.+|.||.+||+....+.+.               +++.++.      
T Consensus        74 ~k~~~---T~~p~~p~spn~k-ts----~~pnk~pstlPdk~~~~eqekh~~---------------gd~e~ka------  124 (264)
T KOG3032|consen   74 AKTRP---TKIPALPKSPNSK-TS----FFPNKEPSTLPDKSKNLEQEKHTI---------------GDEENKA------  124 (264)
T ss_pred             ccCcC---ccCccCCCCCCcc-cc----ccCCCCCCcCCCCCcchhcccCCC---------------Cccchhc------
Confidence            11111   1111111111111 11    012234589999998876433221               1111111      


Q ss_pred             hcccccCCCCCCcccccCCCCCCCCCcchhccccchhhhhcCCCCCCCCCChhhhhhhhcCCCCCCChHHHHHHHHHHHH
Q 019989          163 LENEMDELPNGNAVHAEKGQPFKEHPEKSKQNAGSEAKQIKGALPEGFFDNKDADLLARGIKPVKPDVKDEYKEYEKLIQ  242 (332)
Q Consensus       163 ~e~~~~~LP~~~~~~~~~~~~~~~~s~s~~k~~~~E~~~~~~~LPeGFFDD~~~DakaR~v~~~k~~~e~Ew~eFqkeI~  242 (332)
                          .|     +|+.    +              .+..++.++||+|||||++.|+.||+|..++++|++||++||++|+
T Consensus       125 ----qG-----nfs~----~--------------penent~e~lPegFFDdke~d~~vr~~~e~k~~~d~Ey~rfqkeI~  177 (264)
T KOG3032|consen  125 ----QG-----NFSN----Q--------------PENENTNENLPEGFFDDKEADLLVRGIKEVKPDIDDEYKRFQKEIQ  177 (264)
T ss_pred             ----cc-----cccC----C--------------ccccchhhcCcccccCchhhhhhhhhccccchhHHHHHHHHHHHHH
Confidence                11     2332    1              1335689999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccCCCCCCCCCCCchhhh
Q 019989          243 EDLKQVDDRLEEEEIDAAEMIEEYESVDQKTYREKVEALRKKKKEWEASSRSAKSRGSSEVARKEPPKEELSSDDDSEEI  322 (332)
Q Consensus       243 ee~~es~~~~EeEe~~~~~ere~~eidEQi~~~~RV~~Lk~kk~~~~~~~~~k~~~~~~~~~~~~~~~~~sssdde~~~d  322 (332)
                      +++++++.|++|++++++..|++.||+|||.||+||+.|+.++.+++.+.+.+..+    +.... +.++|++|.|++++
T Consensus       178 ~~~tesd~iveEeeed~~l~reieeidEQi~~~kkvekl~~qK~ellnkkRe~~~k----~ev~k-e~eesddDgeddDl  252 (264)
T KOG3032|consen  178 DDLTESDSIVEEEEEDAALTREIEEIDEQISYKKKVEKLKRQKMELLNKKREKTSK----GEVKK-EEEESDDDGEDDDL  252 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cccCc-ccccCccccchhhh
Confidence            99999999999999999999999999999999999999999999999875444333    11111 24666777788888


Q ss_pred             hhhcccccCC
Q 019989          323 FAVDWRAQHL  332 (332)
Q Consensus       323 ~~~DWRaK~~  332 (332)
                      +++|||+|||
T Consensus       253 ~a~DWRaKnl  262 (264)
T KOG3032|consen  253 SAVDWRAKNL  262 (264)
T ss_pred             hhhhhhhhhc
Confidence            8899999996

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.91  E-value=6.9e-06  Score=54.41  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CCceeecccccccCcchhHHhhCChHHHHHHHH
Q 019989           34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (332)
Q Consensus        34 G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~   66 (332)
                      |...|.+|+..+.++..|..|+.|+.|+.++.+
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            678999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.51  E-value=4.1e-05  Score=48.82  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=25.1

Q ss_pred             CceeecccccccCcchhHHhhCChHHH
Q 019989           35 QPVCRVCDVVLKSDSQWDAHQASRKHH   61 (332)
Q Consensus        35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr   61 (332)
                      |..|.+|+..+.++..|..|+.|+.||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            568999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.74  E-value=0.0018  Score=59.73  Aligned_cols=50  Identities=18%  Similarity=0.386  Sum_probs=45.0

Q ss_pred             ccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhccC
Q 019989           23 INSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGAT   72 (332)
Q Consensus        23 I~~P~A~Y~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~~~~   72 (332)
                      .+.||..-|.+|++.|.||+..-.+|+-.-.|..+|+|.+|+.+....+.
T Consensus        41 ~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~eks   90 (222)
T COG5246          41 MDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKS   90 (222)
T ss_pred             ccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhh
Confidence            45699999999999999999999999999999999999999999765444

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.00087  Score=68.85  Aligned_cols=35  Identities=31%  Similarity=0.633  Sum_probs=33.7

Q ss_pred             ceeecccccccCcchhHHhhCChHHHHHHHHHhhc
Q 019989           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG   70 (332)
Q Consensus        36 L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~~   70 (332)
                      |.|.+||...|+|..|.-|..||+|+++|+.|++.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.69  E-value=0.00083  Score=41.48  Aligned_cols=25  Identities=28%  Similarity=0.603  Sum_probs=23.8

Q ss_pred             ceeecccccccCcchhHHhhCChHH
Q 019989           36 PVCRVCDVVLKSDSQWDAHQASRKH   60 (332)
Q Consensus        36 L~C~lC~~~vk~EslW~aH~~sk~H   60 (332)
                      +.|.+|++...++..|..|+.|+.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            4699999999999999999999998

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.12  E-value=0.0061  Score=56.68  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=50.3

Q ss_pred             HHHhHHHHHHHHHHHhhhcccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989            4 ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus         4 ~~~ka~~R~~lr~~r~~~rI~~P~A~Y~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      ..|+--+|.|+-..-.  --..||.--|-.|.+.|.||+..-.+|.-.-+|..||+|.+||++.-+
T Consensus        24 ~~RrerlrqLaletid--l~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa   87 (222)
T KOG0227|consen   24 RDRRERLRQLALETID--LNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA   87 (222)
T ss_pred             HHHHHHHHHHHHhhcc--cccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence            3455556666554321  123599999999999999999999999999999999999999998543

>PLN02748 tRNA dimethylallyltransferase

Probab=94.27  E-value=0.028  Score=58.13  Aligned_cols=36  Identities=31%  Similarity=0.759  Sum_probs=31.9

Q ss_pred             CCceeecccc-cccCcchhHHhhCChHHHHHHHHHhh
Q 019989           34 DQPVCRVCDV-VLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        34 G~L~C~lC~~-~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      -+.+|-+|+. ++..|--|..|+.|+.||.++.+++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            3457999997 78899999999999999999998874

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=88.79  E-value=0.21  Score=43.60  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        32 ~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      ..||-.|+.|.-..-++..-..|..+|.|+.+|..|+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            67999999999998899999999999999999999873

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=88.65  E-value=0.53  Score=43.39  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             cccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHH
Q 019989           26 PLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (332)
Q Consensus        26 P~A~Y~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~   67 (332)
                      +-+.-+..|..-|-||+.+||.=.-+=-||++|.|.-|+..+
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            344456778899999999999877788999999999999764

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.52  E-value=0.54  Score=32.79  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             ceeecccccccCcc--hhHHhhCChHHHHHHHH
Q 019989           36 PVCRVCDVVLKSDS--QWDAHQASRKHHEAIKN   66 (332)
Q Consensus        36 L~C~lC~~~vk~Es--lW~aH~~sk~Hr~~~~~   66 (332)
                      --|-.|+.-|.+.+  .|..|..|.+|+.|+..
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            35999999995444  79999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.49
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.77
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.81
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	84.02
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	80.67

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.49  E-value=0.0016  Score=54.32  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 019989           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (332)
Q Consensus        32 ~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k   68 (332)
                      ..+.+.|.+|++.+.++..+..|+.||.|+.++.++.
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            5678899999999999999999999999999998763

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.83  E-value=0.015  Score=48.33  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      .+.|.+|++.+.+++.-.+|..|+.|+.+|..+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.77  E-value=0.013  Score=49.51  Aligned_cols=39  Identities=15%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989           31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        31 ~~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      +..|+..|..|+....+++.+..|.+||.|+.++..++.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            456899999999999999999999999999999999974

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.81  E-value=0.031  Score=55.45  Aligned_cols=36  Identities=28%  Similarity=0.573  Sum_probs=31.3

Q ss_pred             CCceeecccc------cccCcchhHHhhCChHHHHHHHHHhh
Q 019989           34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        34 G~L~C~lC~~------~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      -+-+|-+|+.      ++-.|--|..|+.|+.||.++.+.+.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k  400 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTR  400 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHH
Confidence            3458999997      78888999999999999999988764

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=84.02  E-value=0.66  Score=34.19  Aligned_cols=35  Identities=20%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      .+.|++|++.--+-.--..||.|++|-.+|..+-+
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            48999999987777778899999999999987543

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=80.67  E-value=0.91  Score=35.47  Aligned_cols=32  Identities=38%  Similarity=0.623  Sum_probs=26.9

Q ss_pred             ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 019989           36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI   67 (332)
Q Consensus        36 L~C~lC~~~vk~E--slW~aH~~sk~Hr~~~~~~   67 (332)
                      --|--|+.-|.+.  +.|..|+.|++|+.|+...
T Consensus         4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            4699999999555  4589999999999999873

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.64
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.87
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	92.27

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.1e-05  Score=60.12  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 019989           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        32 ~~G~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k~   69 (332)
                      ..||.-|++|+...+++..|..|..||+|+.+|.+|+.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            36999999999999999999999999999999999974

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.87  E-value=0.015  Score=41.26  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             ceeecccccccCcchhHHhhCChHHHHHHHHH
Q 019989           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (332)
Q Consensus        36 L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~   67 (332)
                      -.|.|||+..-+..+=..|..||.|..++...
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            48999999999999999999999999998654

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.27  E-value=0.032  Score=41.24  Aligned_cols=34  Identities=41%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 019989           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (332)
Q Consensus        35 ~L~C~lC~~~vk~EslW~aH~~sk~Hr~~~~~~k   68 (332)
                      ...|-+|++++-+||---+|--|++|..+|..+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998753