Citrus Sinensis ID: 020038

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MSTCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
ccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHccccEEEEEccccccccccHHHcccccccEEEEEEEccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccc
ccccHEHEEHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHccccHHHHHHHHcccHHHHHHHHccHHHHcccccHHHHHHHHHcccccHHHHHcccccccccEEEEEcccccHcHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccHEEccEEEEccHHHHHHHHHHcccEEEEEccccccccEEEEcccccEEEEEccccccHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHccHccc
MSTCRAIIRTSFSFVeskfyflpsksflslslrsqkpgpispysvrtrqYGSVQAAISlengnnliddendtpskdnveklltnpdDVTQFMKMERScmvndgvgsmeslsnkrwfpyldrykcgdvylsSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGlsdfgnvsatfrsadalgvQSVHVVscdsskryrenrhvsmgaekWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAisvydmdwscptaivvgnenrgvsdealslsdlrcsipmkgmvdsFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
mstcraiirtsfsfveskfyFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISlengnnliddendtpskdnveKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFrsadalgvqSVHVvscdsskryrenrhvsmgaekwldieLWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
MSTCRAIIRTSFSFVEskfyflpsksflslslrsqkPGPISPYSVRTRQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
***CRAIIRTSFSFVESKFYFLPSKSFLSL*******************************************************************CMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKH*****
**************************************************************************KDNVEKLLTNPDDVTQFMKME******************RWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYK******
MSTCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
**TCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAI**ENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHE****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVVVFPLILWFLLYKHETFQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
O67577211 tRNA (guanosine(18)-2'-O) yes no 0.509 0.800 0.317 8e-23
O51081218 Putative tRNA/rRNA methyl yes no 0.5 0.761 0.303 5e-20
P0AGJ4229 tRNA (guanosine(18)-2'-O) yes no 0.484 0.703 0.331 1e-19
P0AGJ2229 tRNA (guanosine(18)-2'-O) N/A no 0.484 0.703 0.331 1e-19
P0AGJ3229 tRNA (guanosine(18)-2'-O) N/A no 0.484 0.703 0.331 1e-19
Q6FF50248 23S rRNA (guanosine-2'-O- yes no 0.524 0.701 0.289 8e-11
Q9HUM8248 23S rRNA (guanosine-2'-O- yes no 0.460 0.616 0.3 1e-10
Q87VK2250 23S rRNA (guanosine-2'-O- yes no 0.469 0.624 0.286 1e-10
Q4L3J1249 Putative TrmH family tRNA yes no 0.484 0.646 0.295 3e-10
Q8CTT9249 Putative TrmH family tRNA yes no 0.506 0.674 0.284 4e-10
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus (strain VF5) GN=trmH PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 1/170 (0%)

Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
           ++E+R +R   V++ R   + +  + + +  N SA  R+ DA+GV  ++    +  K+ +
Sbjct: 7   VLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG-KKAK 65

Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVV 261
            N  ++ G+ KW+ IE  D P +     ++RG++I  T +  ++++  ++D++ PT +VV
Sbjct: 66  INEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVV 125

Query: 262 GNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311
           GNE +GVS E + ++D +  IPM GM  S NVSVA GI+++ A   R  +
Sbjct: 126 GNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEK 175
Specifically methylates guanosine-18 in various tRNAs.
Aquifex aeolicus (strain VF5) (taxid: 224324)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 4
>sp|O51081|Y052_BORBU Putative tRNA/rRNA methyltransferase BB_0052 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0052 PE=3 SV=1 Back     alignment and function description
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri GN=trmH PE=3 SV=1 Back     alignment and function description
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmH PE=1 SV=1 Back     alignment and function description
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli O157:H7 GN=trmH PE=3 SV=1 Back     alignment and function description
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter sp. (strain ADP1) GN=rlmB PE=3 SV=1 Back     alignment and function description
>sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rlmB PE=3 SV=1 Back     alignment and function description
>sp|Q87VK2|RLMB_PSESM 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rlmB PE=3 SV=1 Back     alignment and function description
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1 Back     alignment and function description
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
225452930372 PREDICTED: tRNA (guanosine(18)-2'-O)-met 0.915 0.817 0.638 1e-113
296082972369 unnamed protein product [Vitis vinifera] 0.915 0.823 0.638 1e-113
255584325334 rRNA methylase, putative [Ricinus commun 0.852 0.847 0.676 1e-112
15242287350 tRNA/rRNA methyltransferase (SpoU) famil 0.912 0.865 0.628 1e-104
297807561350 tRNA/rRNA methyltransferase family prote 0.894 0.848 0.621 1e-104
449438036370 PREDICTED: tRNA (guanosine(18)-2'-O)-met 0.930 0.835 0.593 1e-104
224080139269 predicted protein [Populus trichocarpa] 0.671 0.828 0.762 1e-99
356523592322 PREDICTED: tRNA (guanosine(18)-2'-O)-met 0.713 0.736 0.693 3e-97
357502123322 tRNA guanosine-2'-O-methyltransferase [M 0.837 0.863 0.592 2e-94
40715982368 rRNA methylase-like protein [Viscum albu 0.822 0.741 0.604 4e-92
>gi|225452930|ref|XP_002278944.1| PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/332 (63%), Positives = 249/332 (75%), Gaps = 28/332 (8%)

Query: 1   MSTCRAIIRTSFSFVE-------SKFYFLP-----SKSFLSLSLR--------SQKPGPI 40
           MS C+ ++R S S +E         F F+P     S S +S SLR        S     +
Sbjct: 4   MSACKTLVRISISSLEFSLVCNQRNFSFIPLPNHPSFSPISSSLRFASLLSPASSISLGL 63

Query: 41  SPYSVRTRQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMV 100
           + + + +R Y  V  ++ +E   +L DD N    KD VE LLTN DDV + MKMER  M 
Sbjct: 64  TRHKLHSRPYVHVAESVGVET-TDLEDDSN----KDIVEHLLTNTDDVGRLMKMERRSMT 118

Query: 101 NDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYS 160
            DG    E + +KRWFPYLD++K G  +LSSSE++EA+ PY+ME RKERF NVVK+RSYS
Sbjct: 119 GDG---GELIQSKRWFPYLDKFKTGTTFLSSSEILEAMDPYIMEVRKERFRNVVKSRSYS 175

Query: 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWD 220
           VCLVVEGL DFGNVSA FRSADALG QSVHVVSCDSSKRY++NRHVSMGAEKWLDIELW+
Sbjct: 176 VCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRYKDNRHVSMGAEKWLDIELWN 235

Query: 221 APRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRC 280
           + +ECF VL+SRGYRIATTHVGMDA+S+YDMDW+CPTAIVVGNENRG+SDEAL LSDL C
Sbjct: 236 STQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIVVGNENRGISDEALELSDLHC 295

Query: 281 SIPMKGMVDSFNVSVAAGILMHHAVCDRATRL 312
           SIPMKGMVDSFNVSVAAGILMHHAVCDR +RL
Sbjct: 296 SIPMKGMVDSFNVSVAAGILMHHAVCDRTSRL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis] gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449438036|ref|XP_004136796.1| PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa] gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523592|ref|XP_003530421.1| PREDICTED: tRNA (guanosine(18)-2'-O)-methyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|357502123|ref|XP_003621350.1| tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] gi|355496365|gb|AES77568.1| tRNA guanosine-2'-O-methyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2151001350 AT5G15390 [Arabidopsis thalian 0.900 0.854 0.611 1.6e-95
TIGR_CMR|CPS_4975235 CPS_4975 "tRNA (guanosine-2'-O 0.490 0.693 0.321 1.5e-21
UNIPROTKB|P0AGJ2229 trmH [Escherichia coli K-12 (t 0.472 0.685 0.333 1.5e-19
DICTYBASE|DDB_G0271370310 DDB_G0271370 "tRNA guanosine-2 0.316 0.338 0.280 3e-16
UNIPROTKB|Q3A9P4237 CHY_2335 "RNA methyltransferas 0.527 0.738 0.311 1e-11
TIGR_CMR|CHY_2335237 CHY_2335 "RNA methyltransferas 0.527 0.738 0.311 1e-11
TIGR_CMR|CPS_0784180 CPS_0784 "RNA methyltransferas 0.439 0.811 0.281 1.4e-11
UNIPROTKB|Q47VA9251 rlmB "23S rRNA (guanosine-2'-O 0.433 0.573 0.322 1.7e-10
TIGR_CMR|CPS_4616251 CPS_4616 "RNA methyltransferas 0.433 0.573 0.322 1.7e-10
UNIPROTKB|Q4KJ63254 rlmB "23S rRNA (guanosine-2'-O 0.445 0.582 0.315 2.6e-10
TAIR|locus:2151001 AT5G15390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 195/319 (61%), Positives = 233/319 (73%)

Query:     1 MSTCRAIIR---TSFSFVEX---XXXXXXXXXXXXXXXXXXXPGPISPYSVRTRQYGSVQ 54
             M++C+++IR   +SF FV                        P      + R   +G+V 
Sbjct:     1 MNSCKSLIRASISSFPFVPLPNPNFSITFISVRAFSPLSVLHPNSSCIVTARRTFHGAV- 59

Query:    55 AAISLENGNNLIDDENDTPSKDNVEKLLT-NPDDVTQFMKMERSCMVNDGVGSMESLSNK 113
              A+S E+    + +E+  P KD V+ LLT N  + +  MKMER C +++G G        
Sbjct:    60 -ALSPES----LTEES--P-KDTVKGLLTTNRGEASSLMKMERRCSLSNGEGDCRG---- 107

Query:   114 RWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGN 173
              WFPY DR++CG+V+LSS EV+EA+SP++MEER +RF  VV+NRSYSVCLVVEGLSDFGN
Sbjct:   108 SWFPYEDRFRCGEVHLSSREVLEAVSPHMMEERTDRFRRVVENRSYSVCLVVEGLSDFGN 167

Query:   174 VSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRG 233
             +SA FRSADALG+QSVHVVSCDSSKRY  NRHVSMGAEKWLDIE WD P+ECF VL+SRG
Sbjct:   168 ISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRG 227

Query:   234 YRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNV 293
             YRIATTH+GMD +S+YDMDWSCPTAIVVGNE RG+SDEAL LSDLRCSIPM GMVDSFNV
Sbjct:   228 YRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSIPMNGMVDSFNV 287

Query:   294 SVAAGILMHHAVCDRATRL 312
             SVAAGILMHHAV DR TRL
Sbjct:   288 SVAAGILMHHAVSDRTTRL 306
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
TIGR_CMR|CPS_4975 CPS_4975 "tRNA (guanosine-2'-O-)-methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P0AGJ2 trmH [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271370 DDB_G0271370 "tRNA guanosine-2'-O-methyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9P4 CHY_2335 "RNA methyltransferase, TrmH family, group 3" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2335 CHY_2335 "RNA methyltransferase, TrmH family, group 3" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0784 CPS_0784 "RNA methyltransferase, TrmH family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q47VA9 rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase RlmB" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4616 CPS_4616 "RNA methyltransferase, TrmH family, group 3" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KJ63 rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase RlmB" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.1.1.66LOW CONFIDENCE prediction!
3rd Layer2.1.1.34LOW CONFIDENCE prediction!
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021031001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (369 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
pfam00588142 pfam00588, SpoU_methylase, SpoU rRNA Methylase fam 1e-43
COG0566260 COG0566, SpoU, rRNA methylases [Translation, ribos 6e-39
PRK11081229 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltran 6e-34
TIGR00186237 TIGR00186, rRNA_methyl_3, rRNA methylase, putative 3e-23
PRK11181244 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-met 3e-10
PRK10864346 PRK10864, PRK10864, putative methyltransferase; Pr 1e-09
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family Back     alignment and domain information 
 Score =  146 bits (371), Expect = 1e-43
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 3/144 (2%)

Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY-RENRHVSMGAEKWLDIEL 218
            + +V++   D GN+ A  R+A A G   + +V    +  Y  +    S GA   L + +
Sbjct: 1   PLIVVLDEPQDPGNLGAIARTAAAFGADGLILVEPRCADPYNPKAIRASAGALFHLPLVI 60

Query: 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDL 278
            D   E    L+  G+ I  T   +    +Y++D+    A+V GNE  G+S+E L L D 
Sbjct: 61  VDNLEEALKDLKEAGFWIIATS--LKGKPLYEIDFPKKVALVFGNEGTGLSNEVLELCDR 118

Query: 279 RCSIPMKGMVDSFNVSVAAGILMH 302
              IPM G V+S NV+VAA I+++
Sbjct: 119 LVRIPMSGEVESLNVAVAAAIILY 142

This family of proteins probably use S-AdoMet. Length = 142
>gnl|CDD|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236837 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3 Back     alignment and domain information
>gnl|CDD|183021 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236779 PRK10864, PRK10864, putative methyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
COG0566260 SpoU rRNA methylases [Translation, ribosomal struc 100.0
PRK11181244 23S rRNA (guanosine-2'-O-)-methyltransferase; Prov 100.0
TIGR00186237 rRNA_methyl_3 rRNA methylase, putative, group 3. t 100.0
PRK10864346 putative methyltransferase; Provisional 100.0
PRK11081229 tRNA guanosine-2'-O-methyltransferase; Provisional 100.0
TIGR00185153 rRNA_methyl_2 rRNA methylase, putative, group 2. t 100.0
PF00588142 SpoU_methylase: SpoU rRNA Methylase family; InterP 100.0
PRK10358157 putative rRNA methylase; Provisional 100.0
TIGR00050233 rRNA_methyl_1 RNA methyltransferase, TrmH family, 99.97
PRK15114245 tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr 99.96
KOG0838271 consensus RNA Methylase, SpoU family [RNA processi 99.96
KOG2506371 consensus SpoU rRNA Methylase family protein [Tran 99.96
PRK10433228 putative RNA methyltransferase; Provisional 99.95
COG0219155 CspR Predicted rRNA methylase (SpoU class) [Transl 99.92
COG0565242 LasT rRNA methylase [Translation, ribosomal struct 99.87
KOG08391477 consensus RNA Methylase, SpoU family [RNA processi 99.82
PRK03958176 tRNA 2'-O-methylase; Reviewed 98.33
PF09936185 Methyltrn_RNA_4: SAM-dependent RNA methyltransfera 97.86
COG4080147 SpoU rRNA Methylase family enzyme [General functio 97.84
COG1303179 Uncharacterized protein conserved in archaea [Func 96.88
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 96.34
PRK12703 339 tRNA 2'-O-methylase; Reviewed 95.31
PF09895106 DUF2122: RecB-family nuclease (DUF2122); InterPro: 93.47
COG4752190 Uncharacterized protein conserved in bacteria [Fun 92.94
PF01994120 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; 89.49
PF14419173 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fus 85.67
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-49  Score=371.37  Aligned_cols=227  Identities=25%  Similarity=0.323  Sum_probs=188.8

Q ss_pred             hhhhcChHHHHHHHHcCCccc---ccCc----cchHHhhhhhcCCcc--cccccCCC--cccCcHHHHHhhCCCcchhhH
Q 020038           79 EKLLTNPDDVTQFMKMERSCM---VNDG----VGSMESLSNKRWFPY--LDRYKCGD--VYLSSSEVVEALSPYLMEERK  147 (332)
Q Consensus        79 e~ll~g~~~V~~~l~~~~r~~---~~~~----~~~i~~La~~~~i~~--~~~~~l~~--~~~~~qgV~~~v~~~~~~~r~  147 (332)
                      +.+++|.|.|.+++.++.++.   +.+.    ...+...+..+++++  +++..++.  ....||||++.+.+..+....
T Consensus        21 ~~~~~G~~~v~~al~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~~~  100 (260)
T COG0566          21 EFLIEGEHAVLEALASGPKIVRILVTEGRLPRFEELLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPLLD  100 (260)
T ss_pred             cEEEeeHHHHHHHHhcCCCceEEEEecccchhHHHHHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccchh
Confidence            478999999999999998654   2221    122333444456664  44444443  457899999999888765433


Q ss_pred             HHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChH-HHH
Q 020038          148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPR-ECF  226 (332)
Q Consensus       148 ~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~-~~l  226 (332)
                      +....    ...+++|+||+|+||||+|||+|||+|||+++||+.++++++++++++|+|+|+.+++|+.++.|.. .++
T Consensus       101 ~~~~~----~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~  176 (260)
T COG0566         101 DLLDA----EAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLL  176 (260)
T ss_pred             hhhhc----ccCCEEEEEecCcCCcchhhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHHHH
Confidence            33322    1557999999999999999999999999999999999999999999999999999999999989655 555


Q ss_pred             HHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 020038          227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC  306 (332)
Q Consensus       227 ~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~r  306 (332)
                      +.+++.|||++|++.++ +.++++.++++|++||||||+.|||+++++.||..|+|||.|.++|||||||+||+|||+.|
T Consensus       177 ~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~~r  255 (260)
T COG0566         177 ELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEARR  255 (260)
T ss_pred             HHHHHcCeEEEEECCCC-CcchhhccccCCEEEEECCCCCCcCHHHHhhCCEEEEecCCCCcchhHHHHHHHHHHHHHHH
Confidence            55555999999999986 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 020038          307 DRAT  310 (332)
Q Consensus       307 qR~~  310 (332)
                      ||..
T Consensus       256 q~~~  259 (260)
T COG0566         256 QRRA  259 (260)
T ss_pred             hhcC
Confidence            9864

>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3 Back     alignment and domain information
>PRK10864 putative methyltransferase; Provisional Back     alignment and domain information
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2 Back     alignment and domain information
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ] Back     alignment and domain information
>PRK10358 putative rRNA methylase; Provisional Back     alignment and domain information
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1 Back     alignment and domain information
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional Back     alignment and domain information
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10433 putative RNA methyltransferase; Provisional Back     alignment and domain information
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>PRK03958 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function Back     alignment and domain information
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only] Back     alignment and domain information
>COG1303 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function Back     alignment and domain information
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs Back     alignment and domain information
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1zjr_A211 Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODI 7e-24
1v2x_A194 Trmh Length = 194 2e-20
1ipa_A274 Crystal Structure Of Rna 2'-O Ribose Methyltransfer 1e-09
3gyq_A272 Structure Of The Thiostrepton-Resistance Methyltran 1e-07
1gz0_A253 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb 3e-07
1x7p_A287 Crystal Structure Of The Spou Methyltransferase Avi 5e-07
2i6d_A257 The Structure Of A Putative Rna Methyltransferase O 5e-07
2ha8_A184 Methyltransferase Domain Of Human Tar (Hiv-1) Rna B 6e-07
1x7o_A287 Crystal Structure Of The Spou Methyltransferase Avi 5e-06
3nk6_A277 Structure Of The Nosiheptide-Resistance Methyltrans 2e-04
>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING ENZYME Length = 211 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
           ++E+R +R   V++ R   + +  + + +  N SA  R+ DA+GV  ++    +  K+ +
Sbjct: 7   VLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG-KKAK 65
Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVV 261
            N  ++ G+ KW+ IE  D P +     ++RG++I  T +  ++++  ++D++ PT +VV
Sbjct: 66  INEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVV 125
Query: 262 GNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311
           GNE +GVS E + ++D +  IPM GM  S NVSVA GI+++ A   R  +
Sbjct: 126 GNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEK 175
>pdb|1V2X|A Chain A, Trmh Length = 194 Back     alignment and structure
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Back     alignment and structure
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272 Back     alignment and structure
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Back     alignment and structure
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet Length = 287 Back     alignment and structure
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Back     alignment and structure
>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding Protein 1 Length = 184 Back     alignment and structure
>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Back     alignment and structure
>pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase Length = 277 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 6e-66
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 2e-63
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 2e-44
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 2e-31
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 5e-29
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 9e-28
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 8e-26
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 1e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
3e5y_A160 TRMH family RNA methyltransferase; ssgcid, protein 5e-04
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211 Back     alignment and structure
 Score =  205 bits (524), Expect = 6e-66
 Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 1/171 (0%)

Query: 138 LSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSS 197
           +   ++E+R +R   V++ R   + +  + + +  N SA  R+ DA+GV  ++    +  
Sbjct: 3   MEYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG- 61

Query: 198 KRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPT 257
           K+ + N  ++ G+ KW+ IE  D P +     ++RG++I  T +  ++++  ++D++ PT
Sbjct: 62  KKAKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPT 121

Query: 258 AIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
            +VVGNE +GVS E + ++D +  IPM GM  S NVSVA GI+++ A   R
Sbjct: 122 VLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQR 172
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184 Back     alignment and structure
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287 Back     alignment and structure
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277 Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Length = 257 Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Length = 160 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 100.0
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 100.0
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 100.0
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 100.0
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 100.0
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 100.0
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 100.0
3e5y_A160 TRMH family RNA methyltransferase; ssgcid, protein 100.0
3n4j_A165 RNA methyltransferase; center for structural genom 100.0
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 100.0
3l8u_A182 SMU.1707C, putative rRNA methylase; methyltransfer 100.0
3kty_A173 Probable methyltransferase; alpha-beta-alpha sandw 100.0
3ilk_A244 Uncharacterized tRNA/RRNA methyltransferase HI038; 100.0
3onp_A249 TRNA/RRNA methyltransferase (SPOU); structural gen 100.0
3ic6_A223 Putative methylase family protein; putative methyl 100.0
3dcm_X192 AdoMet, uncharacterized protein TM_1570; trefoil k 99.66
2yy8_A201 ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, 96.15
2o3a_A178 UPF0106 protein AF_0751; structural genomics, unkn 95.81
2qmm_A197 UPF0217 protein AF_1056; alpha/beta knot, SAM, str 93.16
3aia_A211 UPF0217 protein MJ1640; DUF358, rRNA methyltransfe 90.49
2qwv_A208 UPF0217 protein VC_A1059; unknown function, struct 81.83
1vhk_A268 Hypothetical protein YQEU; structural genomics, un 80.54
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
Probab=100.00  E-value=2e-47  Score=357.25  Aligned_cols=229  Identities=21%  Similarity=0.260  Sum_probs=189.2

Q ss_pred             hhhhcChHHHHHHHHcCC-ccc---ccCc-----cchHHhhhhhcCCcc--cccccCCC--cccCcHHHHHhhCCCcchh
Q 020038           79 EKLLTNPDDVTQFMKMER-SCM---VNDG-----VGSMESLSNKRWFPY--LDRYKCGD--VYLSSSEVVEALSPYLMEE  145 (332)
Q Consensus        79 e~ll~g~~~V~~~l~~~~-r~~---~~~~-----~~~i~~La~~~~i~~--~~~~~l~~--~~~~~qgV~~~v~~~~~~~  145 (332)
                      ..+++|+|.|.++++++. .+.   +.+.     ...+..++++.++++  +++..++.  ....||||++.+.+..+..
T Consensus        12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~   91 (253)
T 1gz0_A           12 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQ   91 (253)
T ss_dssp             CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCC
T ss_pred             cEEEEEHHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCc
Confidence            468999999999999884 333   2221     124445566666664  44443433  3467999999998765421


Q ss_pred             hHHHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHH
Q 020038          146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPREC  225 (332)
Q Consensus       146 r~~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~  225 (332)
                      . ..+.++++.+..+++||||+++||+|+|+|+|||++||+++|++.+++++++++++.|+|||+.+|+|+.++.|+.++
T Consensus        92 ~-~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~  170 (253)
T 1gz0_A           92 E-NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART  170 (253)
T ss_dssp             G-GGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHH
T ss_pred             H-HHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHH
Confidence            1 123344443345789999999999999999999999999999998877777888999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 020038          226 FNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV  305 (332)
Q Consensus       226 l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~  305 (332)
                      ++.|+++|+++++++..+ +.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.
T Consensus       171 l~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~  249 (253)
T 1gz0_A          171 MRMLQEENIWIVGTAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV  249 (253)
T ss_dssp             HHHHHHTTCEEEEECTTC-SEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEECCC-CcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHH
Confidence            999999999999999754 6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 020038          306 CDRA  309 (332)
Q Consensus       306 rqR~  309 (332)
                      |||.
T Consensus       250 rq~~  253 (253)
T 1gz0_A          250 RQRS  253 (253)
T ss_dssp             HHTC
T ss_pred             HhhC
Confidence            9873
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Back     alignment and structure
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Back     alignment and structure
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0 Back     alignment and structure
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A* Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Back     alignment and structure
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0 Back     alignment and structure
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis} Back     alignment and structure
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae} Back     alignment and structure
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Back     alignment and structure
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Back     alignment and structure
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} Back     alignment and structure
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Back     alignment and structure
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Back     alignment and structure
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Back     alignment and structure
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1gz0a1166 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Esch 7e-27
d1v2xa_191 c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH 1e-26
d1mxia_156 c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransf 2e-20
d1ipaa1158 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal doma 1e-19
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (253), Expect = 7e-27
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 1/164 (0%)

Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
           ++    +++ +      L+++G++D  N+ A  RSADA GV +V V    S++     + 
Sbjct: 4   QENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKK 63

Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNEN 265
           V+ GA + + +           +L+     I     G    ++Y    +   A+V+G E 
Sbjct: 64  VACGAAESVPLIRVTNLARTMRMLQEENIWI-VGTAGEADHTLYQSKMTGRLALVMGAEG 122

Query: 266 RGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRA 309
            G+        D   SIPM G V S NVSVA GI +  AV  R+
Sbjct: 123 EGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 166
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191 Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 156 Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1gz0a1166 RlmB, C-terminal domain {Escherichia coli [TaxId: 100.0
d1v2xa_191 tRNA (Gm18) methyltransferase TrmH {Thermus thermo 100.0
d1ipaa1158 RrmA (RrmH), C-terminal domain {Thermus thermophil 100.0
d1mxia_156 Hypothetical tRNA/rRNA methyltransfease HI0766 (Yi 100.0
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 97.28
d2o3aa1167 Uncharacterized protein AF0751 {Archaeoglobus fulg 95.26
d1vhka2180 Hypothetical protein YqeU {Bacillus subtilis [TaxI 89.42
d2qwva1201 Uncharacterized protein VCA1059 {Vibrio cholerae [ 87.89
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-43  Score=306.95  Aligned_cols=160  Identities=28%  Similarity=0.357  Sum_probs=151.2

Q ss_pred             HHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHHHH
Q 020038          148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN  227 (332)
Q Consensus       148 ~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l~  227 (332)
                      ..+.+++++.+.|++||||+++||+|+|+|+|||++||+++|++..+++++..+++.|+|+|+.+++++..+.|+.++++
T Consensus         6 ~~l~~~~~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~~~~~~~l~   85 (166)
T d1gz0a1           6 NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMR   85 (166)
T ss_dssp             GGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHH
T ss_pred             ccHHHHHhccCCCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeecccccccchhhheeccCcceEeceeecCCHHHHHH
Confidence            35677777777899999999999999999999999999999999888888888889999999999999999999999999


Q ss_pred             HHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 020038          228 VLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD  307 (332)
Q Consensus       228 ~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rq  307 (332)
                      .+++.||++++++... ..++.+.++++|++||||||+.||++++++.||+.|+|||.|.++|||||+|+||+|||+.||
T Consensus        86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvs~A~~I~lye~~rq  164 (166)
T d1gz0a1          86 MLQEENIWIVGTAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ  164 (166)
T ss_dssp             HHHHTTCEEEEECTTC-SEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             Hhcccccccccccccc-cccHHHhhccCCeEEEeccCcCCCCHHHHHhCCEEEEEcCcCCCCceeHHHHHHHHHHHHHHc
Confidence            9999999999999764 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h
Q 020038          308 R  308 (332)
Q Consensus       308 R  308 (332)
                      |
T Consensus       165 r  165 (166)
T d1gz0a1         165 R  165 (166)
T ss_dssp             T
T ss_pred             c
Confidence            8
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure