Citrus Sinensis ID: 020048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHccccEEEEEEEEEEEEEccEEEcccccEEEEccccEEEEcccEEEEEEEEEEEcccEEEcccccccccEEEcccccEEEEEcccccccccccEEEEccccEEEEEEEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEccccEEEEEccccEEEEEcEEEEccccccccccccEEEccccEEEEEcEEEEccccEEEEEEccc
cccccccccccccccccccccccccccccccHcccccHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEEEccccEEEEccccccccEEEEEEccccccccccEEEEEEEccccccEEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEccccccccEEccccccEEcccEEcccccccccEEEEEEEEcc
mgnshghhhhhrneansyfphqtptptpppfkfgpsdhhqhqpaaqfqnnstmslpyahvdcSLRALAGqaegfgrlaigglhgplyhvttladdgpgslregcrmkepLWIVFEVSGtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdyddgliditrestditvsrchfsshdktmligadpshvadrcirvtihhcffdgtrqrhprvrYAKVHLYnnytrnwgIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFsipflnqssrFFCFQLYMG
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSgtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdYDDGLIDITrestditvsrchfSSHDKTMLIGADPSHVADRCIRVTIHhcffdgtrqrhprVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
MGNShghhhhhRNEANSYFPHQtptptpppFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
******************************************************LPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLY**
************N*ANSYF**********************************SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
*************EANSYFPHQTPTPTPPPFKFG**********AQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
*********************QTPTPTPPPFKFGPSDHHQHQPA*QFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKVSVLSIFFFSIPFLNQSSRFFCFQLYMG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
Q9C8G4368 Probable pectate lyase 4 no no 0.719 0.649 0.406 4e-43
Q9FM66392 Putative pectate lyase 21 no no 0.725 0.614 0.389 2e-40
O65388384 Putative pectate lyase 2 no no 0.680 0.588 0.398 3e-39
Q93Z04 501 Probable pectate lyase 13 no no 0.713 0.473 0.403 3e-38
P15721398 Probable pectate lyase P5 N/A no 0.707 0.590 0.405 3e-36
P40972397 Pectate lyase OS=Nicotian N/A no 0.707 0.591 0.390 1e-35
O65457394 Putative pectate lyase 17 no no 0.734 0.619 0.368 1e-35
P27762397 Pollen allergen Amb a 2 O N/A no 0.680 0.569 0.370 2e-35
Q9LTZ0412 Putative pectate lyase 11 no no 0.656 0.529 0.382 3e-35
O65456394 Probable pectate lyase 16 no no 0.689 0.581 0.377 5e-35
>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1 Back     alignment and function desciption
 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/251 (40%), Positives = 152/251 (60%), Gaps = 12/251 (4%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
           +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I
Sbjct: 53  QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQ 175
            L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I+
Sbjct: 113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query: 176 IKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCI 235
           +  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +
Sbjct: 173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query: 236 RVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
           RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K
Sbjct: 232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query: 295 KMAFKYLTEKV 305
           + + K +T+++
Sbjct: 292 RSS-KQVTKRM 301

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1 Back     alignment and function description
>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function description
>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2 Back     alignment and function description
>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O65457|PLY17_ARATH Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1 Back     alignment and function description
>sp|P27762|MPAA2_AMBAR Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|O65456|PLY16_ARATH Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
225439836373 PREDICTED: probable pectate lyase 4-like 0.900 0.801 0.784 1e-137
147866065422 hypothetical protein VITISV_005608 [Viti 0.912 0.718 0.777 1e-137
118483499386 unknown [Populus trichocarpa] 0.909 0.782 0.769 1e-136
118488640389 unknown [Populus trichocarpa] 0.921 0.786 0.766 1e-134
297741529329 unnamed protein product [Vitis vinifera] 0.759 0.765 0.904 1e-134
255587404389 Pollen allergen Amb a 1.1 precursor, put 0.921 0.786 0.789 1e-132
356548168366 PREDICTED: probable pectate lyase 4-like 0.879 0.797 0.748 1e-132
224140117333 predicted protein [Populus trichocarpa] 0.762 0.759 0.881 1e-132
224092007333 predicted protein [Populus trichocarpa] 0.762 0.759 0.877 1e-131
449448679376 PREDICTED: probable pectate lyase 4-like 0.903 0.797 0.764 1e-129
>gi|225439836|ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/306 (78%), Positives = 259/306 (84%), Gaps = 7/306 (2%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MG +HG        + ++  H TP  T  P    P+      P+   + N +  LPYAHV
Sbjct: 1   MGGAHGRC------SGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMS-CLPYAHV 53

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVFEVSG I
Sbjct: 54  DSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGII 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
           HL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD IQIKP S
Sbjct: 114 HLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 173

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRCIRVTIH
Sbjct: 174 KHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIH 233

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG KK+AFKY
Sbjct: 234 HCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKY 293

Query: 301 LTEKVS 306
           LTEK +
Sbjct: 294 LTEKAA 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147866065|emb|CAN80964.1| hypothetical protein VITISV_005608 [Vitis vinifera] Back     alignment and taxonomy information
>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488640|gb|ABK96132.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297741529|emb|CBI32661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255587404|ref|XP_002534262.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis] gi|223525624|gb|EEF28121.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548168|ref|XP_003542475.1| PREDICTED: probable pectate lyase 4-like [Glycine max] Back     alignment and taxonomy information
>gi|224140117|ref|XP_002323433.1| predicted protein [Populus trichocarpa] gi|222868063|gb|EEF05194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224092007|ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|222855411|gb|EEE92958.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449448679|ref|XP_004142093.1| PREDICTED: probable pectate lyase 4-like [Cucumis sativus] gi|449516487|ref|XP_004165278.1| PREDICTED: probable pectate lyase 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2100651331 AT3G55140 [Arabidopsis thalian 0.762 0.764 0.830 3.3e-118
TAIR|locus:2074999378 AT3G09540 [Arabidopsis thalian 0.792 0.695 0.757 1.6e-111
TAIR|locus:2204232368 AT1G30350 [Arabidopsis thalian 0.719 0.649 0.406 9.3e-43
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.361 0.291 0.451 1.7e-38
TAIR|locus:2082667 501 PMR6 "powdery mildew resistant 0.710 0.471 0.406 5.5e-38
TAIR|locus:2179949 518 AT5G04310 [Arabidopsis thalian 0.415 0.266 0.416 1.5e-37
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.472 0.347 0.369 2.3e-35
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.403 0.285 0.416 4.9e-35
TAIR|locus:2162182392 AT5G55720 [Arabidopsis thalian 0.626 0.530 0.383 8.5e-33
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.400 0.318 0.397 1.3e-31
TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 210/253 (83%), Positives = 233/253 (92%)

Query:    54 SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
             SLPYA  DCSLRALAG+AEGFGR A+GGLHG LY VT+LADDGPG+LREG R KEPLWIV
Sbjct:     3 SLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLWIV 62

Query:   114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
             F VSGTI+L S+LSVSSYKTIDGRGQR+KLTGKG+RLKECEH+IICNLEFEGG+G DVD 
Sbjct:    63 FAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDG 122

Query:   174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
             IQIKPKS+HIWIDRCSLRDYDDGLIDITR+STDITVSRC+F+ HDKTMLIGADPSHV DR
Sbjct:   123 IQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVEDR 182

Query:   234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
             CIRVTIHHCFFDGTRQR PR+R+ KVHLYNNYTRNWGIYAVCASV++Q++SQCNIYEAG 
Sbjct:   183 CIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEAGV 242

Query:   294 KKMAFKYLTEKVS 306
             KK  F+Y +EK +
Sbjct:   243 KKKTFEYYSEKAA 255
GO:0005886 "plasma membrane" evidence=ISM
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162182 AT5G55720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023108001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (329 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00022688001
RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)
 ••  •  0.923
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
 ••  •  0.923
GSVIVG00016383001
RecName- Full=Pectinesterase; EC=3.1.1.11; (357 aa)
 ••  •  0.921
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
 ••  •  0.921
GSVIVG00028034001
RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)
  •  •  0.920
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
 ••  •  0.920
GSVIVG00006908001
RecName- Full=Pectinesterase; EC=3.1.1.11; (528 aa)
  •  •  0.918
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
 ••  •  0.917
GSVIVG00026388001
RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)
 ••  •  0.916
GSVIVG00021009001
RecName- Full=Pectinesterase; EC=3.1.1.11; (316 aa)
 ••  •  0.916

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
smart00656190 smart00656, Amb_all, Amb_all domain 2e-67
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 6e-43
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 7e-38
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  209 bits (534), Expect = 2e-67
 Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 13/179 (7%)

Query: 126 LSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG---GKGPDVDAIQIKPKSKH 182
           + ++S KTIDGRG +V++ G GL +K   +VII NL         G D DAI I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSN 70

Query: 183 IWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           +WID  SL             DGLIDI   ST +T+S  +F +H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292
            +RVTI H +F   RQR PRVR+  VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.35
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 99.08
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.58
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.35
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.33
PLN02218431 polygalacturonase ADPG 98.32
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.28
PLN02793443 Probable polygalacturonase 98.26
PLN02218431 polygalacturonase ADPG 98.17
PLN03003 456 Probable polygalacturonase At3g15720 98.16
PLN03010409 polygalacturonase 98.08
PLN03003 456 Probable polygalacturonase At3g15720 98.01
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.0
PLN02480343 Probable pectinesterase 97.98
PLN02155394 polygalacturonase 97.98
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.89
PLN02793443 Probable polygalacturonase 97.86
PLN02155394 polygalacturonase 97.84
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.78
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.78
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.78
PLN03010409 polygalacturonase 97.77
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.74
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.69
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.65
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.62
PLN02176340 putative pectinesterase 97.59
PLN02197588 pectinesterase 97.58
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.52
PLN02304379 probable pectinesterase 97.44
PLN02432293 putative pectinesterase 97.37
PLN02497331 probable pectinesterase 97.29
PLN02682369 pectinesterase family protein 97.23
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.14
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.11
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.09
PLN02665366 pectinesterase family protein 97.02
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.0
smart00656190 Amb_all Amb_all domain. 97.0
PLN02773317 pectinesterase 96.94
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.87
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.86
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.85
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.85
PLN02634359 probable pectinesterase 96.81
PLN02301548 pectinesterase/pectinesterase inhibitor 96.75
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.75
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.74
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.74
PLN02314586 pectinesterase 96.65
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.62
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.61
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.6
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.59
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.55
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.54
PLN02671359 pectinesterase 96.36
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.24
PRK10531422 acyl-CoA thioesterase; Provisional 96.1
PLN02916502 pectinesterase family protein 96.08
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.84
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.67
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.5
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 95.44
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 93.34
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.02
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.03
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 88.94
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 84.35
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 80.5
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7e-55  Score=411.12  Aligned_cols=241  Identities=34%  Similarity=0.534  Sum_probs=211.7

Q ss_pred             CcccccC-------CCcCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEeeceEEEec------ceeEeccCcceee
Q 020048           70 QAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVSSYKTIDG  136 (332)
Q Consensus        70 ~aeGfg~-------~ttGG~gG~v~~VTnl~dsG~GSLr~Al~~~~Pr~IVF~VsGtI~L~------~~l~V~snkTI~G  136 (332)
                      +.+|||+       +||||.||++++|+|.+|     |..++.+.+|.++|+-|.|+|+++      ..|++.+||||.|
T Consensus        33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG  107 (345)
T COG3866          33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVG  107 (345)
T ss_pred             cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEe
Confidence            4788886       589999999999999999     999999999997777799999998      4577789999999


Q ss_pred             eccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCC--CceEEcCCCceEEEEceeeec--------CCCCceEeecCCcc
Q 020048          137 RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDV--DAIQIKPKSKHIWIDRCSLRD--------YDDGLIDITRESTD  206 (332)
Q Consensus       137 ~G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~~~~--DaI~i~~~s~nVwIDHcs~s~--------~~Dg~idi~~~s~n  206 (332)
                      .|..++|.|++|.|+.+.|||||||+|++....|.  |+|+|...++|||||||+|+.        ..||++|+++++++
T Consensus       108 ~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any  187 (345)
T COG3866         108 SGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY  187 (345)
T ss_pred             eccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence            99999999999999999999999999998654444  999997689999999999998        68999999999999


Q ss_pred             EEEeCceeccCCceeeecCCCCC-CCCcceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCccceEEEccC--ceEE
Q 020048          207 ITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD--SQIY  283 (332)
Q Consensus       207 VTIS~n~f~~h~k~~LiG~~d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~--a~v~  283 (332)
                      ||||||+|++|+|++|+|++|+. .+|++.+||+|||||+|+.+|+||+|+|.+|+|||||.+...+++..+++  |+++
T Consensus       188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Akiy  267 (345)
T COG3866         188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIY  267 (345)
T ss_pred             EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEE
Confidence            99999999999999999999875 45677899999999999999999999999999999999777666666666  9999


Q ss_pred             EEceEEecCCceeeeeehhcc---cc-CceeEEeee
Q 020048          284 SQCNIYEAGQKKMAFKYLTEK---VS-VLSIFFFSI  315 (332)
Q Consensus       284 ~egNyf~~g~~~~~~~~~~~~---~~-~~~~~~~~~  315 (332)
                      +|+|||++...+..|-+....   +. |...|+.++
T Consensus       268 vE~NyF~~~~~~~~f~dt~~~~GY~~~d~gsy~~~s  303 (345)
T COG3866         268 VENNYFENGSEGLGFLDTKGTSGYANQDSGSYLNSS  303 (345)
T ss_pred             EecceeccCCCCceeeecCCccceEEeccCceeccc
Confidence            999999999888755443333   33 666777555

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 6e-35
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 6e-24
3zsc_A340 Catalytic Function And Substrate Recognition Of The 2e-23
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 2e-20
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 3e-16
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 3e-16
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 8e-16
3krg_A399 Structural Insights Into Substrate Specificity And 2e-15
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-15
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 2e-13
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-13
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 1e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 1e-07
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 5e-07
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 3e-05
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 6e-05
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 27/251 (10%)
Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHL 122
           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I L
Sbjct: 21  LADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL 80
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVII-------CNLEFEG-------- 165
           +  L V+ +KTIDGRG  V L   G  L +++  HVI+       CN    G        
Sbjct: 81  KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESI 140
Query: 166 GKGP----DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           G  P    D DAI ++    + WID  SL D  DGLID+T  ST IT+S  HF +H K M
Sbjct: 141 GVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVM 199
Query: 222 LIGADPSHVADRCIRVTIH-HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+G D ++  D+ ++VT+  + F     QR PR RY  VH+ NN    W IYA+  S + 
Sbjct: 200 LLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNP 259
Query: 281 QIYSQCNIYEA 291
            I S+ N + A
Sbjct: 260 TILSEGNSFTA 270
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 3e-80
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 3e-77
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 7e-74
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 1e-61
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-60
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-60
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 2e-60
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 9e-55
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 5e-54
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-53
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 3e-51
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 4e-06
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 8e-05
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 3e-04
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
 Score =  246 bits (630), Expect = 3e-80
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 36/261 (13%)

Query: 66  ALAGQAEGFGRL--------AIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVS 117
           +L  +  GF  +         +GGL G +  V T  +     L +    +    IV + +
Sbjct: 1   SLNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIVVDGT 55

Query: 118 GTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGP 169
                +  + V S KTI G     K+ G GL +K+ ++VII N+ FEG        GK  
Sbjct: 56  IVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKY 114

Query: 170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
           D D I ++  S HIWID  +  + +DG +DI + S  ITVS   F  HDK  L+G+    
Sbjct: 115 DFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKE 173

Query: 230 VAD---RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNW----------GIYAVCA 276
             +   +  +VT HH +F    QR PR+R+   H++NN+               IY V +
Sbjct: 174 DPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233

Query: 277 SVDSQIYSQCNIYEAGQKKMA 297
           ++ ++++ + N +      MA
Sbjct: 234 AMGAKVHVEGNYFMGYGAVMA 254
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Length = 506 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.85
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.84
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.81
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.8
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.77
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.6
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.55
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.54
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.47
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.42
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.38
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.29
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.28
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.25
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.16
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.09
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.08
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.07
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.05
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.03
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.01
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.99
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.97
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.82
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.82
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.73
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.72
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.6
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.53
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.53
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.43
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.42
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.39
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.38
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.34
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.26
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.24
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.05
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.04
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.01
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.98
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.96
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.89
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.77
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.64
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.53
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.52
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.45
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.36
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.28
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.19
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 95.55
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.17
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.08
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 94.19
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.4
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=4.5e-65  Score=496.15  Aligned_cols=232  Identities=40%  Similarity=0.637  Sum_probs=218.6

Q ss_pred             cccccccCCcccccCCCcCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEeeceEEEecceeEeccCcceeee
Q 020048           62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGR  137 (332)
Q Consensus        62 ~~~~a~a~~aeGfg~~ttGG~gG~v~~VTnl~ds----G~GSLr~Al~~~~Pr~IVF~VsGtI~L~~~l~V~snkTI~G~  137 (332)
                      .+.++++++|||||++||||+||+||+||+|+|+    +|||||+||++++||+|||+++|+|+|+++|.|.+||||+|+
T Consensus        16 ~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~   95 (346)
T 1pxz_A           16 QNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGR   95 (346)
T ss_dssp             TCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECT
T ss_pred             hhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEcc
Confidence            3566677799999999999999999999999998    899999999999999999999999999999999999999999


Q ss_pred             ccceEEeC--CcEEEeeeccEEEeeeEEeCCC-------------------CCCCCceEEcCCCceEEEEceeeecCCCC
Q 020048          138 GQRVKLTG--KGLRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDG  196 (332)
Q Consensus       138 G~gitI~G--~gi~i~~a~NVIIRnL~ir~g~-------------------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg  196 (332)
                      |..++|.|  .+|+|..++|||||||+|+...                   ..+.|||.+. ++++||||||+|+|+.||
T Consensus        96 ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg  174 (346)
T 1pxz_A           96 GADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDG  174 (346)
T ss_dssp             TSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSE
T ss_pred             CCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCCC
Confidence            99999997  5899999999999999999753                   2578999998 899999999999999999


Q ss_pred             ceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceee-cCCCCcCCccccCeEEEEcceEEcCccceEE
Q 020048          197 LIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVC  275 (332)
Q Consensus       197 ~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf-~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~  275 (332)
                      ++|+++++++||||||+|++|.|++|||++|+...|+.++||||||+| +++.+|+||+|+|++|++||||++|+.|+++
T Consensus       175 ~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~  254 (346)
T 1pxz_A          175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG  254 (346)
T ss_dssp             EEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEE
T ss_pred             cEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEe
Confidence            999998999999999999999999999999877777778999999999 9999999999999999999999999999999


Q ss_pred             EccCceEEEEceEEecCCc
Q 020048          276 ASVDSQIYSQCNIYEAGQK  294 (332)
Q Consensus       276 ~~~~a~v~~egNyf~~g~~  294 (332)
                      .++++++++|+|||++++.
T Consensus       255 ~~~~~~i~~egN~F~~~~~  273 (346)
T 1pxz_A          255 GSSNPTILSEGNSFTAPSE  273 (346)
T ss_dssp             EESCCEEEEESCEEECCSC
T ss_pred             ccCCceEEEECCEEECCCC
Confidence            9999999999999999975
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-81
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-60
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-56
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-53
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 5e-49
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-45
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  249 bits (636), Expect = 1e-81
 Identities = 90/261 (34%), Positives = 127/261 (48%), Gaps = 25/261 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
             LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I
Sbjct: 19  MKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNI 78

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVIICNLEFEGGKGPDVDAIQIKP 178
            L+  L V+ +KTIDGRG  V L   G  L +++  HVI+ +L   G     +  + +  
Sbjct: 79  KLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSE 138

Query: 179 K------------------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
                                + WID  SL D  DGLID+T  ST IT+S  HF +H K 
Sbjct: 139 SIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKV 198

Query: 221 MLIGADPSHVADRCIRVTIHHC-FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD 279
           ML+G D ++  D+ ++VT+    F     QR PR RY  VH+ NN    W IYA+  S +
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSN 258

Query: 280 SQIYSQCNIYEAGQKKMAFKY 300
             I S+ N + A  +    + 
Sbjct: 259 PTILSEGNSFTAPSESYKKEV 279
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.77
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.7
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.45
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.45
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.34
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.24
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.04
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 98.01
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.97
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.82
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.77
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.39
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.38
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.08
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.06
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.05
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.04
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.02
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.64
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.63
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.56
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.39
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.28
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.94
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.59
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.32
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.3
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.3
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 94.78
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=8.6e-66  Score=498.72  Aligned_cols=235  Identities=40%  Similarity=0.646  Sum_probs=216.2

Q ss_pred             ccccccccCCcccccCCCcCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEeeceEEEecceeEeccCcceee
Q 020048           61 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDG  136 (332)
Q Consensus        61 d~~~~a~a~~aeGfg~~ttGG~gG~v~~VTnl~ds----G~GSLr~Al~~~~Pr~IVF~VsGtI~L~~~l~V~snkTI~G  136 (332)
                      +.+.++||+||||||+.||||+||+||+||||+|+    ||||||+||++++||||||+|+|+|+|+++|.|.|||||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G   94 (346)
T d1pxza_          15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             HHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEc
Confidence            45778999999999999999999999999999998    99999999999999999999999999999999999999999


Q ss_pred             eccceEEeCCc--EEEeeeccEEEeeeEEeCCC-------------------CCCCCceEEcCCCceEEEEceeeecCCC
Q 020048          137 RGQRVKLTGKG--LRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDD  195 (332)
Q Consensus       137 ~G~gitI~G~g--i~i~~a~NVIIRnL~ir~g~-------------------~~~~DaI~i~~~s~nVwIDHcs~s~~~D  195 (332)
                      ||..+.|.+.+  |.+.+++|||||||+|+.+.                   ..+.|+|.+. +++|||||||+|+|+.|
T Consensus        95 ~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D  173 (346)
T d1pxza_          95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeecccc
Confidence            98777887654  88888999999999999753                   1357999997 89999999999999999


Q ss_pred             CceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCC-CcCCccccCeEEEEcceEEcCccceE
Q 020048          196 GLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR-QRHPRVRYAKVHLYNNYTRNWGIYAV  274 (332)
Q Consensus       196 g~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~-~R~Pr~r~G~~hv~NN~~~n~~~~ai  274 (332)
                      |++|+++++++||||||+|.+|.|++|+|+++....++..+||||||+|.++. +|.|+.|+|.+|++||||+||..|++
T Consensus       174 ~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~  253 (346)
T d1pxza_         174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE
Confidence            99999999999999999999999999999988766667789999999997765 55568899999999999999999999


Q ss_pred             EEccCceEEEEceEEecCCcee
Q 020048          275 CASVDSQIYSQCNIYEAGQKKM  296 (332)
Q Consensus       275 ~~~~~a~v~~egNyf~~g~~~~  296 (332)
                      ++++++++++|+|||++++.+.
T Consensus       254 ~~~~~~~v~~e~N~F~~~~~~~  275 (346)
T d1pxza_         254 GGSSNPTILSEGNSFTAPSESY  275 (346)
T ss_dssp             EEESCCEEEEESCEEECCSCGG
T ss_pred             eccCceEEEEEeeEEECCCCcc
Confidence            9999999999999999988874
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure