Citrus Sinensis ID: 020106

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccHHcccccccHccccccHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHEEEcccccccccccccccHHHHHcHHHHHHHHccccHHHccccccc
Coil and Loop (DISEMBL)
medsgagssddatksststcprghwrpaeDEKLRQLVEQYGAQNWNSIAEKLqgrsgkscrlrwfnqldprinrrpfteDEEERLLAAHRIHGNKWALIARlfpgrtdnavkNHWHVIMARKQREqsklcgkrshqdtgniisdqnFIHARRSRSqdamlsskfgfdqnsrifefrnpnhdrtfavspppsssltwafgaapivtssnnssvdlsrreagdffntstkvsdqhpyrscypnssaygsyrgsssfgvtnyrrfvpspfgyvkvgddyeshgvIKKEvikfsdnspshlnLRLSTqqaqaddqsikhheevpfidflgvgias
Flexible Loop (DISEMBL)
medsgagssddatksststcprghwrpaEDEKLRQLVEQYGAQNWNSIAEklqgrsgkscrlrwfnqldprinrrpftEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQreqsklcgkrshqdtgniisdqnfIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVtssnnssvdLSRREAGDFfntstkvsdqhpyrSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS
Low Complexity Region (SEG)
MEdsgagssddatksststCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSCYPNssaygsyrgsssFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS
Disordered region (IsUnstruct)
***********************************LVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPF*****ERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA**************************************************************************TWAFGAAPIV*********************************CY****AYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKF*****************************VPFIDFLGVG***
Disordered Region (DISOPRED)
************************WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI*********************************************************************************************************************************************************************************************************PFIDFLGVGIA*
Disordered Region (DISEMBL)
*************************RPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR**************QDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRL***********IKHHEEVPFIDFLGVGIAS
Disordered Region (DISPRO)
*****AGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGK****************************************************************************************DFFNTSTKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.326	0.354	0.539	3e-31
P52551	743	Myb-related protein B OS=	N/A	no	0.383	0.170	0.451	8e-28
B0G0Y5	971	Myb-like protein AA OS=Di	yes	no	0.305	0.104	0.524	1e-26
Q08759	624	Transcriptional activator	N/A	no	0.435	0.230	0.388	2e-26
Q03237	686	Myb-related protein B OS=	yes	no	0.250	0.120	0.495	2e-26
P48972	704	Myb-related protein B OS=	yes	no	0.305	0.143	0.485	3e-26
P10244	700	Myb-related protein B OS=	yes	no	0.305	0.144	0.485	3e-26
P10242	640	Transcriptional activator	no	no	0.326	0.168	0.462	6e-26
P06876	636	Transcriptional activator	no	no	0.326	0.169	0.462	7e-26
P46200	640	Transcriptional activator	no	no	0.326	0.168	0.462	7e-26

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 79/115 (68%), Gaps = 7/115 (6%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W P EDE+LR+LV +YG +NW  I++ + GRSGKSCRLRW NQL P++  RPF+ +E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQ 136
           +E +  AH   GNKWA IARL  GRTDNAVKNHW+  + RK       CG   H+
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK-------CGGYDHR 113

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 6/133 (4%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   EDEK+ +LV++YG ++W  IA++L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQ----- 136
           +  +  AH++ GN+WA IA+L PGRTDNAVKNHW+  + RK      L  K S Q     
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQQEERE 202

Query: 137 DTG-NIISDQNFI 148
           D+G     DQN +
Sbjct: 203 DSGYQAAEDQNHV 215

Xenopus laevis (taxid: 8355)

>sp|B0G0Y5|MYBAA_DICDI Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 69/101 (68%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +GHW   EDEKLR LV+ +G + W  IA  L  R+G+ CR RW NQLDP I R  +T +E
Sbjct: 757 KGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLEE 816

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +L AH  +GNKWA I++L PGRT+ A+KNHW+  M RK
Sbjct: 817 DRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRK 857

Dictyostelium discoideum (taxid: 44689)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 8/152 (5%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV +YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTGNI 141
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK+ EQ       S  +   I
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKE-EQEGYLQNSSKTNQHTI 207

Query: 142 ISD-------QNFIHARRSRSQDAMLSSKFGF 166
           +++         F H R S       +S F +
Sbjct: 208 VTNFPKSNHLMTFTHTRASAEHSQASTSSFPY 239

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 72/101 (71%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+K+ +LV++YG + W  IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 83  KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH++ GN+WA IA+L PGRTDNAVKNHW+  + RK
Sbjct: 143 DRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 72/101 (71%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+K+ +LV++YG + W  IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 83  KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 142

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH++ GN+WA IA++ PGRTDNAVKNHW+  + RK
Sbjct: 143 DRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Mus musculus (taxid: 10090)

>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 72/101 (71%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+K+ +LV++YG + W  IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 83  KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEE 142

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH++ GN+WA IA++ PGRTDNAVKNHW+  + RK
Sbjct: 143 DRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Homo sapiens (taxid: 9606)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKL 129
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++  L
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYL 199

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKL 129
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++  L
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYL 199

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 75/108 (69%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKL 129
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++  L
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYL 199

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
224085057	334	predicted protein [Populus trichocarpa]	0.975	0.967	0.663	1e-110
359492779	321	PREDICTED: transcriptional activator Myb	0.924	0.953	0.607	7e-98
356518595	331	PREDICTED: transcription factor LAF1-lik	0.918	0.918	0.530	1e-83
356507610	338	PREDICTED: uncharacterized protein LOC10	0.921	0.902	0.523	4e-81
224062960	264	predicted protein [Populus trichocarpa]	0.788	0.988	0.537	1e-78
255558450	346	r2r3-myb transcription factor, putative	0.836	0.800	0.557	4e-75
147810338	320	hypothetical protein VITISV_041798 [Viti	0.788	0.815	0.559	3e-72
147776678	312	hypothetical protein VITISV_035519 [Viti	0.906	0.961	0.501	2e-66
225431453	302	PREDICTED: transcriptional activator Myb	0.906	0.993	0.501	2e-66
224093402	348	predicted protein [Populus trichocarpa]	0.969	0.922	0.436	7e-64

>gi|224085057|ref|XP_002307474.1| predicted protein [Populus trichocarpa] gi|222856923|gb|EEE94470.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/342 (66%), Positives = 265/342 (77%), Gaps = 19/342 (5%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           ME+S AG+S D  KS+   CPRGHWRPAED+KLRQLVEQYGAQNWNSIAEKLQGRSGKSC
Sbjct: 1   MEESLAGNSSDDAKSTA--CPRGHWRPAEDDKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 58

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRWFNQLDPRINRRPF+E+EEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA
Sbjct: 59  RLRWFNQLDPRINRRPFSEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 118

Query: 121 RKQREQSKLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNH 180
           R+QREQSKLCGKRS+QD  +  +  N  HA +SR+QD + +S+ GFD +SR+ EFRNP  
Sbjct: 119 RRQREQSKLCGKRSYQDNLSESNATNSSHAGKSRAQD-VFNSRIGFD-DSRVLEFRNPGK 176

Query: 181 DRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGD-FFNTST--------KVSD 231
           DR  ++S P  SS +W F  + I  S+N+SSVDLSRRE  D +FN+S          +SD
Sbjct: 177 DRILSIS-PSGSSPSWNFAPSTIAASNNSSSVDLSRREGRDNYFNSSLFCTTESSKLISD 235

Query: 232 QHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFG-YVKVGDDYESHGVIKKEVIKFS 290
           Q  YR  Y NSS  GSYR SS FG+ NYRR VPSPFG Y+K+GDDYE+HG+IKKE+    
Sbjct: 236 QPIYRY-YTNSSVCGSYRSSSIFGLPNYRRVVPSPFGSYLKLGDDYENHGMIKKELAS-C 293

Query: 291 DNSPSHLNLR-LSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
            NS +  NLR  S  Q + D +SIK H++ PFIDFLGVGI+S
Sbjct: 294 HNSSTLNNLRATSNHQEKGDHESIK-HKDAPFIDFLGVGISS 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492779|ref|XP_002278632.2| PREDICTED: transcriptional activator Myb-like [Vitis vinifera] gi|302142744|emb|CBI19947.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/336 (60%), Positives = 245/336 (72%), Gaps = 30/336 (8%)

Query: 8   SSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ 67
           SSDDA      TCPRGHWRPAEDEKLRQLVE+YGAQNWNSIAEKLQGRSGKSCRLRWFNQ
Sbjct: 4   SSDDAK-----TCPRGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQGRSGKSCRLRWFNQ 58

Query: 68  LDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 127
           LDPRINR+PFTE+EEERLLAAHRIHGNKWALI+RLFPGRTDNAVKNHWHVIMARKQREQS
Sbjct: 59  LDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHVIMARKQREQS 118

Query: 128 KLCGKRSHQDTGNIISDQNF----IHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRT 183
           KLCGKRS++D   ++SD N          SRSQ    +++    +NSR+FEF NPN +  
Sbjct: 119 KLCGKRSYKD---VLSDSNTSSNGFRGSNSRSQQYSSANRL---ENSRLFEFLNPNKEGI 172

Query: 184 FAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNT--------STKVSDQHPY 235
           F++S P SSS +W F  +    ++N+SS DL RR   D FN+        S    D+  Y
Sbjct: 173 FSIS-PSSSSPSWTFARSISKATNNSSSTDLLRRGGRDHFNSCSSDGIMDSQNSLDRSLY 231

Query: 236 RSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPS 295
           R  + NSSAYG YR S++FG  NY+R V  P GY K+GD    HG++K+E + F DNSP+
Sbjct: 232 R-YFSNSSAYGGYRTSTAFGFPNYKRVVSGPVGYSKLGD---PHGMLKREFVNFGDNSPT 287

Query: 296 HLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
              + ++ QQ Q +D+SIK  + +PFIDFLGVGI+S
Sbjct: 288 FAKMIMTNQQEQ-EDESIK-QKNIPFIDFLGVGISS 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518595|ref|XP_003527964.1| PREDICTED: transcription factor LAF1-like [Glycine max]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 189/356 (53%), Positives = 227/356 (63%), Gaps = 52/356 (14%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           MEDS AG         T TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC
Sbjct: 1   MEDSSAGED-------TKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 53

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRWFNQLDPRINRRPFTE+EEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA
Sbjct: 54  RLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 113

Query: 121 RKQREQSKLCGKRSHQDTGNIISDQNFIHAR---RSRSQDAMLSSKFGFDQNSRIFEFRN 177
           RKQREQSKLCGKRS QD  N  S+  F+  R   +S  QD + S++FG  +N   F+FR+
Sbjct: 114 RKQREQSKLCGKRSFQDVYN-DSNNTFLEKRTTPQSHHQDMLFSTRFGL-ENGIFFDFRS 171

Query: 178 ---------PNHDRTFAVSPPPSSSLTWAFGAAPIVTSS------NNSSVDLSRREAGDF 222
                     N+ R  + +P  +S  +W FG+ P  T+       NN+S       +  +
Sbjct: 172 LDKNKDDSNNNNHRIVSDTPSSNSLASWNFGSVPTTTTKGARDNFNNTSC-----SSSVY 226

Query: 223 FNTSTKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVP-SPFGYVKVGDDYESHGV 281
            +  ++ SD+      YPN           +F + NY+R VP SP     +G   +  G 
Sbjct: 227 LSECSRSSDRSFLYRIYPN----------PAFSLPNYKRVVPTSPLISTFLGSS-DHDGR 275

Query: 282 IKKEVIKFSDN----SPSHLNLRLST----QQAQADDQSIKHHEEVPFIDFLGVGI 329
           IKK+++ F DN    S +   L+ ST    QQ   D+ +    +EVPFIDFLGVG+
Sbjct: 276 IKKDLMSFCDNNTNSSSTFTKLKASTEKDQQQTNEDETNNIKPKEVPFIDFLGVGV 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507610|ref|XP_003522557.1| PREDICTED: uncharacterized protein LOC100817328 [Glycine max]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 190/363 (52%), Positives = 232/363 (63%), Gaps = 58/363 (15%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           MEDS AG         T TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC
Sbjct: 1   MEDSSAGED-------TRTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 53

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRWFNQLDPRINRRPFTE+EEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA
Sbjct: 54  RLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 113

Query: 121 RKQREQSKLCGKRSHQDTGNIISDQNFIHAR---RSRSQDAMLS-SKFGFDQNSRIFEFR 176
           RKQREQSKLCGKRS QD  N  S+  F+  R   +S  QD + S ++FG  +N R F+FR
Sbjct: 114 RKQREQSKLCGKRSFQDVYN-DSNNTFLEKRTTPQSHHQDMLFSTTRFGL-ENGRFFDFR 171

Query: 177 NPNHD-------RTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTS--- 226
           + +++       R  + +   +S  +W F + P  TS+       + + A D+FNTS   
Sbjct: 172 SLDNNKDDDNNYRIVSDTTSSTSLASWNFASVPTTTST-------TTKGARDYFNTSRSS 224

Query: 227 -------TKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVP-SPFGYVKVGDDYES 278
                  ++ SD+      YPN           +F + NY+R VP SPF       D+  
Sbjct: 225 SVYLSECSRSSDRSFLYRIYPN----------PAFSLPNYKRVVPTSPFRTFLGSSDHHD 274

Query: 279 HGVIKKEVIKFSD-----NSPSHLNLRLST-----QQAQADDQSIKHHEEVPFIDFLGVG 328
             +IK++++ F D     +S +   L+ ST     QQ   +D +    +EVPFIDFLGVG
Sbjct: 275 GWIIKRDLMSFCDNNNNNSSSTFSKLKASTEKDHQQQQTNEDATNVEPKEVPFIDFLGVG 334

Query: 329 IAS 331
           ++S
Sbjct: 335 VSS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062960|ref|XP_002300949.1| predicted protein [Populus trichocarpa] gi|222842675|gb|EEE80222.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/331 (53%), Positives = 215/331 (64%), Gaps = 70/331 (21%)

Query: 2   EDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCR 61
           E S AG+S D  KS+   CPRGHWRPAED+KLRQLVEQYGAQNWN IAEKLQGRSGKSCR
Sbjct: 3   EYSLAGNSSDDAKSTA--CPRGHWRPAEDDKLRQLVEQYGAQNWNDIAEKLQGRSGKSCR 60

Query: 62  LRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121
           LRWFNQLDPRINRRPF+E+EEERLLAAH++HGNKWALIAR+FPGRTDNAVKNHWHVIMAR
Sbjct: 61  LRWFNQLDPRINRRPFSEEEEERLLAAHQVHGNKWALIARVFPGRTDNAVKNHWHVIMAR 120

Query: 122 KQREQSKLCGKRSHQDTGNIISDQNFI-HARRSRSQDAMLSSKFGFDQNSRIFEFRNPNH 180
           KQREQSKLCGKR +QD+ +  +  +   HAR+SR+Q+ + SS+ GF ++SR  EFRN   
Sbjct: 121 KQREQSKLCGKRRYQDSLSDSNPPSSSSHARKSRTQE-LFSSRIGF-EDSRECEFRN--- 175

Query: 181 DRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSCYP 240
                    PS   T++   +    S N+    L+                         
Sbjct: 176 ---------PSKDRTFSISPSSSSPSWNSPPSTLA------------------------A 202

Query: 241 NSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLNLR 300
           +++   S   SS FG+ NYRR VPSP GY+K+GDDY +HG+IKKE+              
Sbjct: 203 SNNWRSSNWSSSKFGLPNYRRVVPSPLGYLKLGDDYGNHGMIKKEL-------------- 248

Query: 301 LSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
                          H++VPFIDFLGVGI+S
Sbjct: 249 ---------------HKDVPFIDFLGVGISS 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558450|ref|XP_002520250.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223540469|gb|EEF42036.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 214/312 (68%), Gaps = 35/312 (11%)

Query: 50  EKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDN 109
           E +   +GKSCRLRWFNQLDPRINRRPF+E+EEERLLAAHR HGNKWALIARLFPGRTDN
Sbjct: 40  ELVALHTGKSCRLRWFNQLDPRINRRPFSEEEEERLLAAHRTHGNKWALIARLFPGRTDN 99

Query: 110 AVKNHWHVIMARKQREQSKLCGKRSHQDTG----NIISDQNFIHARRSRSQDAML--SSK 163
           AVKNHWHVIMARKQRE SK+ GKRS+Q+ G    N I+  N  H R+SRSQD  +  SS+
Sbjct: 100 AVKNHWHVIMARKQREHSKISGKRSYQEGGLSDSNTITTTNDFHLRKSRSQDLFVSSSSR 159

Query: 164 FGFDQNS-RIFEFRNPNHDRTFAVSPPPSSSLT--WAFGA----APIVTSSNNSSVDLSR 216
            GF+ ++ R  EFR+ N DR  +V    S+S    W F +    AP   ++ +S+  LS 
Sbjct: 160 IGFENSTARFLEFRDLNTDRLLSVVSSSSTSSPNFWTFASSTKTAPFNKNNASSADHLST 219

Query: 217 REAGD-FFNT--------STKVSDQHPYRSCYPNSSA-YGSYRGSSSFGVTNYRRFVPSP 266
            E  D +FNT        S+K SDQ  Y  CYPNSS+ YG+Y+  + FG+ NYRR +PSP
Sbjct: 220 EEGRDNYFNTYSFCTTDQSSKFSDQSIYNRCYPNSSSVYGNYKNPAVFGLPNYRRVIPSP 279

Query: 267 FGYVKVGD-DYESHGVIKKEVIK-FSDNSPSHLNLRLSTQQAQADDQSIKHHE-----EV 319
           FG +K+GD D+E+HG IKK+V+K F +NS S L   +S Q+ Q  D    HHE     EV
Sbjct: 280 FGCLKIGDHDFENHGTIKKDVLKNFCENS-STLITNMSNQEEQGGD----HHESIRQKEV 334

Query: 320 PFIDFLGVGIAS 331
           PFIDFLGVGI+S
Sbjct: 335 PFIDFLGVGISS 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810338|emb|CAN76166.1| hypothetical protein VITISV_041798 [Vitis vinifera]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/286 (55%), Positives = 200/286 (69%), Gaps = 25/286 (8%)

Query: 58  KSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHV 117
           KSCRLRWFNQLDPRINR+PFTE+EEERLLAAHRIHGNKWALI+RLFPGRTDNAVKNHWHV
Sbjct: 48  KSCRLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWALISRLFPGRTDNAVKNHWHV 107

Query: 118 IMARKQREQSKLCGKRSHQDTGNIISDQNF----IHARRSRSQDAMLSSKFGFDQNSRIF 173
           IMARKQREQSKLCGKRS++D   ++SD N          SRSQ    +++    +NSR+F
Sbjct: 108 IMARKQREQSKLCGKRSYKD---VLSDSNTSSNGFRGSNSRSQQYSSANRL---ENSRLF 161

Query: 174 EFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNT-------- 225
           EF NPN +  F++SP  SS  +W F  +    ++N+SS DL RR   D FN+        
Sbjct: 162 EFLNPNKEGIFSISPSSSSP-SWTFARSISKATNNSSSTDLXRRGGRDHFNSCSSDGIMD 220

Query: 226 STKVSDQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKE 285
           S    D+  YR  + NSSAYG YR S++FG  NY+R V  P GY K+GD    HG++K+E
Sbjct: 221 SQNSLDRSLYR-YFSNSSAYGGYRTSTAFGFPNYKRVVSGPVGYSKLGD---PHGMLKRE 276

Query: 286 VIKFSDNSPSHLNLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
            + F DNSP+   + ++ QQ Q +D+SIK  + +PFIDFLGVGI+S
Sbjct: 277 FVNFGDNSPTFAKMIMTNQQEQ-EDESIK-QKNIPFIDFLGVGISS 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776678|emb|CAN67848.1| hypothetical protein VITISV_035519 [Vitis vinifera]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 210/333 (63%), Gaps = 33/333 (9%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           MEDS  GSSDD        C RGHWRPAEDEKLRQLV+QYG  NWNSIA+KL+GRSGKSC
Sbjct: 11  MEDSAGGSSDDGR-----NCQRGHWRPAEDEKLRQLVDQYGPHNWNSIADKLEGRSGKSC 65

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRWFNQLDPRINR+PFTE+EEERLLAAHRIHGNKW+LIARLFPGRTDNAVKNH+HVIMA
Sbjct: 66  RLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWSLIARLFPGRTDNAVKNHYHVIMA 125

Query: 121 RKQREQSKLCGKRSHQDTGNII-SDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPN 179
           R+ RE+ + C KRS QD  N   ++ +    + SR Q    ++K GF       +F+N  
Sbjct: 126 RRHRERLRQCSKRSCQDHPNDSNTNPSSFFLKFSRPQ-LEYNTKLGFP------DFQNHE 178

Query: 180 HDRTFAVSPPPSSSL-TWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSC 238
            +  F VS   S SL +W        +++N +S+ L++      F  S+    + P  + 
Sbjct: 179 RNGIFPVS--FSKSLPSWTHSG----STNNPNSLRLNK-----IFGASSSSCSKEPSHNG 227

Query: 239 YPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLN 298
              S +      SS     N      S  G   +GDD   HG +K +++K SDNS +   
Sbjct: 228 LDQSLSSYYSNSSSYGSYRNL-----SSLGMPYLGDDRGIHGAMKNKLVKLSDNSTTFPK 282

Query: 299 LRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
           LR+ T+Q Q  ++SIK   +VPFIDFLGVG +S
Sbjct: 283 LRIITEQKQ--EESIK-STDVPFIDFLGVGSSS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431453|ref|XP_002274206.1| PREDICTED: transcriptional activator Myb [Vitis vinifera]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 209/333 (62%), Gaps = 33/333 (9%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           MEDS  GSSDD        C RGHWRPAEDEKLRQLV+QYG  NWNSIA+KL+GRSGKSC
Sbjct: 1   MEDSAGGSSDDGR-----NCQRGHWRPAEDEKLRQLVDQYGPHNWNSIADKLEGRSGKSC 55

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRWFNQLDPRINR+PFTE+EEERLLAAHRIHGNKW+LIARLFPGRTDNAVKNH+HVIMA
Sbjct: 56  RLRWFNQLDPRINRKPFTEEEEERLLAAHRIHGNKWSLIARLFPGRTDNAVKNHYHVIMA 115

Query: 121 RKQREQSKLCGKRSHQDTGNII-SDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPN 179
           R+ RE+ + C KRS QD  N   ++ +    + SR Q    ++K GF       +F+N  
Sbjct: 116 RRHRERLRQCSKRSCQDHPNDSNTNPSSFFLKFSRPQ-LEYNTKLGFP------DFQNHE 168

Query: 180 HDRTFAVSPPPSSSL-TWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVSDQHPYRSC 238
            +  F VS   S SL +W        +++N +S+ L +      F  S+    + P  + 
Sbjct: 169 RNGIFPVS--FSKSLPSWTHSG----STNNPNSLRLDK-----IFGASSSSCSKEPSHNG 217

Query: 239 YPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIKFSDNSPSHLN 298
              S +      SS     N      S  G   +GDD   HG +K +++K SDNS +   
Sbjct: 218 LDQSLSSYYSNSSSYGSYRNL-----SSLGMPYLGDDRGIHGAMKNKLVKLSDNSTTFPK 272

Query: 299 LRLSTQQAQADDQSIKHHEEVPFIDFLGVGIAS 331
           LR+ T+Q Q  ++SIK   +VPFIDFLGVG +S
Sbjct: 273 LRIITEQKQ--EESIK-STDVPFIDFLGVGSSS 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093402|ref|XP_002309913.1| predicted protein [Populus trichocarpa] gi|222852816|gb|EEE90363.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 156/357 (43%), Positives = 216/357 (60%), Gaps = 36/357 (10%)

Query: 1   MEDSGAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSC 60
           MED    SS D  K+S   C RGHWRPAEDEKLRQLV+QYG QNWN IAE LQGRSGKSC
Sbjct: 1   MEDLKGSSSSDDGKTS---CHRGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQGRSGKSC 57

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRW+NQLDP IN+RPFTEDEEERLL AH+IHGN+WA I+RLFPGRTDNAVKNH+HV+MA
Sbjct: 58  RLRWYNQLDPNINKRPFTEDEEERLLKAHQIHGNRWASISRLFPGRTDNAVKNHYHVVMA 117

Query: 121 RKQREQS-KLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGF-------DQNSRI 172
           R++RE+     GKR++       +D    H R +R+      S FGF       D  S++
Sbjct: 118 RRKRERCLTFHGKRNNFQV-QYSTDH---HLRSNRNSSTPPGSNFGFFRPQVSLDYGSKL 173

Query: 173 FEFRNPNHDRTFAVSPPPS--SSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVS 230
             F+N   +R     P  S  SS +W   +A  +T +++ S D+   +  D+   S+  S
Sbjct: 174 -GFQNNIIERKGTNIPMTSSNSSPSWTNVSASTIT-NDSLSFDVFDAKRKDYIQYSSSNS 231

Query: 231 DQHP-----------YRSCYPNSSAYGSYRGSSSFGVTNYRRFVP-SPFGYVKVGDDYES 278
             HP           + + +P+S+ Y +Y+      + N ++  P +PF     GD Y S
Sbjct: 232 SLHPKEGPLALNESLHCTYHPSSTIYNNYQNVVGQQIPNAKKVDPNNPFALTSYGDGYGS 291

Query: 279 H--GVIKKEVIKFSDNS--PSHL-NLRLSTQQAQADDQSIKHHEEVPFIDFLGVGIA 330
           +   + + ++++ + N+  P+ L  L +++QQ + D      +++V FIDFLGVGI+
Sbjct: 292 NKEKITESQLVRLNSNNHEPAALWKLPMASQQEEKDHGGQLKNQDVAFIDFLGVGIS 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2206910	243	MYB54 "myb domain protein 54"	0.329	0.448	0.844	1.3e-55
TAIR|locus:2030903	249	MYB52 "myb domain protein 52"	0.583	0.775	0.531	2.9e-54
TAIR|locus:2007136	330	MYB105 "myb domain protein 105	0.338	0.339	0.812	2e-51
TAIR|locus:2200635	359	MYB117 "myb domain protein 117	0.338	0.311	0.794	1.4e-50
TAIR|locus:2119171	250	MYB69 "myb domain protein 69"	0.555	0.736	0.495	4.7e-50
TAIR|locus:2087017	305	MYB110 "myb domain protein 110	0.326	0.354	0.740	2.9e-46
TAIR|locus:2175931	323	MYB56 "myb domain protein 56"	0.329	0.337	0.770	2.7e-45
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.326	0.294	0.537	3.9e-35
TAIR|locus:2164900	190	MYB89 "myb domain protein 89"	0.317	0.552	0.6	2.3e-32
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.416	0.351	0.476	4.7e-32

TAIR|locus:2206910 MYB54 "myb domain protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 92/109 (84%), Positives = 100/109 (91%)

Query:    20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTE 79
             C RGHWRPAEDEKL+ LVEQYG  NWN+IA KL GRSGKSCRLRWFNQLDPRINR PFTE
Sbjct:     4 CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTE 63

Query:    80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSK 128
             +EEERLLAAHRIHGN+W++IARLFPGRTDNAVKNHWHVIMAR+ R+ SK
Sbjct:    64 EEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSK 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2030903 MYB52 "myb domain protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 109/205 (53%), Positives = 138/205 (67%)

Query:    20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTE 79
             C RGHWRPAEDEKLR+LVEQ+G  NWN+IA+KL GRSGKSCRLRWFNQLDPRINR PFTE
Sbjct:     3 CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query:    80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTG 139
             +EEERLLA+HRIHGN+W++IAR FPGRTDNAVKNHWHVIMAR+ RE+SKL  +    D G
Sbjct:    63 EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHD-G 121

Query:   140 NIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFG 199
              + +    I   +   ++  L++    +     ++F + NH   F V       LT   G
Sbjct:   122 TVAAT-GMIGNYKDCDKERRLATTTAINFP---YQFSHINH---FQVL---KEFLTGKIG 171

Query:   200 AAPIVTSSNNSSVDLSRREAGDFFN 224
                  T     ++D ++R   +F+N
Sbjct:   172 FRNSTTPIQEGAIDQTKRPM-EFYN 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2007136 MYB105 "myb domain protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 91/112 (81%), Positives = 100/112 (89%)

Query:    22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
             RGHWRPAED KL++LV  YG QNWN IAEKLQGRSGKSCRLRWFNQLDPRINRR FTE+E
Sbjct:   107 RGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 166

Query:    82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKR 133
             EERL+ AHR++GNKWA+IARLFPGRTDN+VKNHWHVIMARK REQS    +R
Sbjct:   167 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRR 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

TAIR|locus:2200635 MYB117 "myb domain protein 117" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 89/112 (79%), Positives = 99/112 (88%)

Query:    22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
             RGHWRPAED KL++LV  YG QNWN IAEKLQGRSGKSCRLRWFNQLDPRINRR FTE+E
Sbjct:    98 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query:    82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKR 133
             EERL+ AHR++GNKWA+IARLFPGRTDN+VKNHWHV+MARK RE S    +R
Sbjct:   158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRR 209

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2119171 MYB69 "myb domain protein 69" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 99/200 (49%), Positives = 133/200 (66%)

Query:    20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTE 79
             C RGHWRP ED+ LRQLVEQYG +NWN IA+ L GRSGKSCRLRW+NQLDP I ++PFTE
Sbjct:    17 CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query:    80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTG 139
             +EEERLL AHRI GN+WA IARLFPGRTDNAVKNH+HVIMAR++RE        +   T 
Sbjct:    77 EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFSSTATSTFNQTW 136

Query:   140 NIISDQNFIHARRSRSQDAMLSSKFGFDQNSRIFEFRNPNHDRTFAVSPPPSSSLTWAFG 199
             + +   +    R +RS   +   ++  D++  ++ +       +F VSPP +      FG
Sbjct:   137 HTVLSPSSSLTRLNRSHFGLW--RYRKDKSCGLWPY-------SF-VSPPTNGQ----FG 182

Query:   200 AAPIVTSSNNSSVDLSRREA 219
             ++ +  S+ +  + L RR++
Sbjct:   183 SSSV--SNVHHEIYLERRKS 200

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2087017 MYB110 "myb domain protein 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 80/108 (74%), Positives = 94/108 (87%)

Query:    20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTE 79
             C RGHWR +ED +L +LV  YG QNWN IAE +QGR+GKSCRLRWFNQLDPRIN+R F++
Sbjct:    65 CSRGHWRISEDTQLMELVSVYGPQNWNHIAESMQGRTGKSCRLRWFNQLDPRINKRAFSD 124

Query:    80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 127
             +EEERLLAAHR  GNKWA+IA+LF GRTDNA+KNHWHV+MARK R+QS
Sbjct:   125 EEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLMARKMRQQS 172

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2175931 MYB56 "myb domain protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 84/109 (77%), Positives = 94/109 (86%)

Query:    20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTE 79
             C RGHWRP ED KL++LV Q+G QNWN I+  L GRSGKSCRLRWFNQLDPRIN+R FTE
Sbjct:    91 CSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFTE 150

Query:    80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSK 128
             +EE RLLAAHR +GNKWALI+RLFPGRTDNAVKNHWHVIMAR+ RE  +
Sbjct:   151 EEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRESQR 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 58/108 (53%), Positives = 81/108 (75%)

Query:    22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
             +G W P +DE L +LV+  G +NWN I+  + GRSGKSCRLRW NQLDP + R+PF+++E
Sbjct:    50 KGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSDEE 109

Query:    82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKL 129
             E  +++A  + GNKW++IA+L PGRTDNA+KNHW+  + RK  EQ K+
Sbjct:   110 EHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAEQWKI 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2164900 MYB89 "myb domain protein 89" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 63/105 (60%), Positives = 82/105 (78%)

Query:    23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEE 82
             GHW  +ED KL++LV  +G QNW  I EK++ R+  SCR RWFNQLDP+IN+R FT++EE
Sbjct:    57 GHWTLSEDLKLKELVAVFGPQNWKFIGEKMEPRTSLSCRQRWFNQLDPKINKRNFTDEEE 116

Query:    83 ERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 127
             E+LL AH ++GNKW+ IA+LF  RTD+AVKNHWH +M R  R+QS
Sbjct:   117 EKLLRAHILYGNKWSKIAKLFNRRTDHAVKNHWHSLMNRIIRKQS 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 70/147 (47%), Positives = 96/147 (65%)

Query:    22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
             +G W   ED+ L +LV++ GA+NW+ IA  + GRSGKSCRLRW NQL+P + R  FTE E
Sbjct:    55 KGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVE 114

Query:    82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK--QREQSKLCGKRSHQDTG 139
             ++ ++AAH IHGNKWA+IA+L PGRTDNA+KNHW+  + R+    E++K  G      TG
Sbjct:   115 DQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIG------TG 168

Query:   140 N-IISDQNFIHARRSRSQDAMLSSKFG 165
             + ++ D  F       S +  LSS  G
Sbjct:   169 SLVVDDSGFDRTTTVASSEETLSSGGG 195

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-24
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	9e-22
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-18
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-15
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-14
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	5e-06
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	9e-05

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 98.2 bits (244), Expect = 6e-24
 Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 7   GSSDDATKSSTSTC-----PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQG-RSGKSC 60
           G     +K +T  C      RG W   EDE L   +++ G   W S+ ++    R GKSC
Sbjct: 5   GGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSC 64

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120
           RLRW N L P + R   T DEE+ +L  HR+ GN+W+LIA   PGRTDN +KN+W+  + 
Sbjct: 65  RLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124

Query: 121 RKQREQ 126
           +K   Q
Sbjct: 125 KKLLRQ 130

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 95.0 bits (236), Expect = 9e-22
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQG--RSGKSCRLRWFNQLDPRINRRPFTE 79
           +G W P EDEKL + + +YG   W+S+  K  G  R GKSCRLRW N L P + R  F++
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 80  DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ 126
            EE  ++  H + GN+W+ IA   PGRTDN +KN W+  + +K R++
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 84.5 bits (209), Expect = 5e-18
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 23  GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEE 82
           G W+  EDE L+ LV++ G  NW+ +A  L   +GK    RW N L+P++ ++ ++E+E+
Sbjct: 21  GSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEED 80

Query: 83  ERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSHQDTGNII 142
           E+L+   +  G +W+ IA     RT       +   +            +R+  D    I
Sbjct: 81  EQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDK---I 137

Query: 143 SDQNFIHARRSRSQDAMLSSKF 164
              N   ARR    +  L  + 
Sbjct: 138 DPFNENSARRPDIYEDELLERE 159

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 73.5 bits (181), Expect = 6e-17
 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEER 84
          W   EDEKL +LVE+YG  +W  IAE+L GR+  +CR RW  +L P+ +R P+T++E++R
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 85 L 85
          L
Sbjct: 59 L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 70.2 bits (173), Expect = 7e-16
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL 68
          RG W P EDE L + V+++G  NW+ IA+ L GR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 74  RRPFTEDEEERLLAAHRIHGNK-WALIARLFPGRTDNAVKNHWHVIM 119
           R P+T +E+E L+ A + HGN  W+ IA+  PGRTDN  KN W+  +
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 64.6 bits (158), Expect = 8e-14
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   EDE L +LV++YG  NW  IA++L GR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN 66
          W   EDE L + V++YG  NW  IA++L GR+ K CR RW N
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 74  RRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMAR 121
           +  +TE+E+E L+   + +G N W  IA+  PGRT    +  W  ++  
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 76  PFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
           P+TE+E+E LL A + +G N W  IA+  PGRT    +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 77  FTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSK 128
           +TE+E+E+LL     +GN W  IA    GRT +A ++ W   + R +R +  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKL-RPKRSRGP 50

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDN 109
           P I +  +T +E+E+LL   ++   +W  IA +  GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.65
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.53
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.46
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.44
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.17
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.15
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.01
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.0
PLN03212	249	Transcription repressor MYB5; Provisional	98.98
PLN03091	459	hypothetical protein; Provisional	98.95
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.66
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.3
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.81
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.71
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.55
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.5
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.24
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.2
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.18
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.01
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.94
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.86
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.76
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.66
PRK13923	170	putative spore coat protein regulator protein YlbO	96.54
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.51
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.38
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.33
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.08
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.97
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.97
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.53
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.44
PRK13923	170	putative spore coat protein regulator protein YlbO	94.65
KOG4282	345	consensus Transcription factor GT-2 and related pr	94.41
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.94
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.78
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.95
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.19
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.37
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	88.32
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.26
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	87.85
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	87.68
KOG4282	345	consensus Transcription factor GT-2 and related pr	85.26
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	84.7

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=9.1e-35  Score=270.45  Aligned_cols=110  Identities=37%  Similarity=0.742  Sum_probs=105.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChh
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKW   96 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kW   96 (331)
                      +.+.||+||+|||++|+++|++||.++|..||+.++ +|++++||+||.|||+|+++++.||+|||++|++||..+|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345589999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 020106           97 ALIARLFPGRTDNAVKNHWHVIMARKQREQS  127 (331)
Q Consensus        97 s~IAk~LpgRT~nq~KnRW~~ilkrk~~~~~  127 (331)
                      ++||++|||||+|+|||+|++.+|||..+..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999987765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=1.7e-32  Score=255.36  Aligned_cols=111  Identities=42%  Similarity=0.792  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh-cCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL-QGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN   94 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l-pgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~   94 (331)
                      .++.++|++||+|||++|+++|++||..+|..||+.| ++|+++|||+||.++|+|.+++++||+|||++|++++..||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            4567889999999999999999999998999999998 699999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           95 KWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        95 kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      +|+.||++|||||+++|||||+.+++++..+.
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            99999999999999999999999998887654

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=259.75  Aligned_cols=109  Identities=41%  Similarity=0.864  Sum_probs=104.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh-cCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChh
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL-QGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKW   96 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l-pgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kW   96 (331)
                      ..++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|+++|++||++|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            47889999999999999999999999999999988 48999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           97 ALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        97 s~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      ++||++|||||+++|||||+.++||+.+..
T Consensus        90 skIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999987654

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=2.9e-19  Score=183.44  Aligned_cols=114  Identities=29%  Similarity=0.516  Sum_probs=102.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHh
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIH   92 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~   92 (331)
                      +.++.|++++|+||++||.+|+.+|++||.++|.+|.+.+|+|+..|||+||.|.|+...+++.||-.||+.||.+|.+|
T Consensus       351 ~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~Y  430 (939)
T KOG0049|consen  351 SHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVY  430 (939)
T ss_pred             eeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           93 G-NKWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        93 G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      | ++|++||.+||+||..|...|=...+.-+++-.
T Consensus       431 G~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~  465 (939)
T KOG0049|consen  431 GKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLA  465 (939)
T ss_pred             ccchHHHHHHHccccchhHHHHHHHHHHHHHHHHh
Confidence            9 789999999999999665554444444444333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.65  E-value=1.7e-16  Score=117.42  Aligned_cols=60  Identities=50%  Similarity=1.005  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHH
Q 020106           25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERL   85 (331)
Q Consensus        25 WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~L   85 (331)
                      ||+|||++|+.+|.+||. +|..||++|+.|+..||+.||.++|+|.+++++||+|||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999995 799999999669999999999999999999999999999987

...

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.63  E-value=3.9e-16  Score=160.66  Aligned_cols=105  Identities=25%  Similarity=0.526  Sum_probs=97.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCh-
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNK-   95 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~---nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~k-   95 (331)
                      +....||.|||.+|+++|+....+   +|.+|-..||||+..|..-||...|+|.+++|+||.+||.+|+.+|.+||.+ 
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd  382 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD  382 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence            445789999999999999987543   6999999999999999999999999999999999999999999999999965 


Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106           96 WALIARLFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        96 Ws~IAk~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      |.+|-..+|||++.|||.||...|.+..+
T Consensus       383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K  411 (939)
T KOG0049|consen  383 WAKVRQAVPNRSDSQCRERYTNVLNRSAK  411 (939)
T ss_pred             hhhHHHhcCCccHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998876653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.56  E-value=4.3e-15  Score=151.65  Aligned_cols=109  Identities=28%  Similarity=0.584  Sum_probs=102.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCh
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNK   95 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~k   95 (331)
                      ..-.++.|.|+..||+.|..+|+.||+.+|..||..+.-|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.+
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            34456789999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106           96 WALIARLFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        96 Ws~IAk~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      |+.||..+++|+..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988876554

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=4.9e-15  Score=149.59  Aligned_cols=106  Identities=30%  Similarity=0.648  Sum_probs=100.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHH
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALI   99 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~I   99 (331)
                      ++.|.|+.-||+.|..+|.+||...|.+|++.++..+.+||+.||..+|+|.+++..|+.|||++|+.+...+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106          100 ARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus       100 Ak~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      |..| ||+.+||-.||+.++-......
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            9999 9999999999999987665443

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.46  E-value=1e-13  Score=143.10  Aligned_cols=104  Identities=29%  Similarity=0.612  Sum_probs=93.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCC--CCCCCCHHHHHHHHHHHH-------H
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRI--NRRPFTEDEEERLLAAHR-------I   91 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i--~kg~WT~EED~~Llelv~-------~   91 (331)
                      .+|.||+||++.|..+|.++|. +|.+|++.| ||.+..|++||+++....-  ++++||.||+++|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999996 699999998 8999999999999999874  899999999999999995       3


Q ss_pred             h-------------------CChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           92 H-------------------GNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        92 ~-------------------G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      +                   +..|+.|++.+..|+.-|||.+|..++.+.....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            3                   2359999999999999999999999998765443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.44  E-value=6.1e-14  Score=100.15  Aligned_cols=47  Identities=49%  Similarity=0.972  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhccc
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQL   68 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L   68 (331)
                      |++||+|||++|+++|.+||..+|..||..|+ +||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999877999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=1e-12  Score=93.85  Aligned_cols=46  Identities=37%  Similarity=0.767  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCh-hHHHhhcCC-CCCHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~k-Ws~IAk~Lp-gRT~nq~KnRW~~il  119 (331)
                      +++||+|||++|++++.+||.+ |..||..|| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.20  E-value=2.6e-11  Score=83.55  Aligned_cols=47  Identities=32%  Similarity=0.704  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +++||+|||.+|+.++.+|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.17  E-value=3.4e-11  Score=82.99  Aligned_cols=48  Identities=48%  Similarity=0.994  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      +++||++||++|+.++.+||..+|..||..|++|+..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            478999999999999999996689999999999999999999998764

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.15  E-value=1.8e-11  Score=90.54  Aligned_cols=44  Identities=32%  Similarity=0.576  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           77 FTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        77 WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      ||+|||++|+++|.+||.+|.+||+.|+.||+.+|++||...++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            99999999999999999999999999966999999999998553

...

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=2.1e-10  Score=77.94  Aligned_cols=43  Identities=42%  Similarity=0.829  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           76 PFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      +||+||+.+|+.++.++| .+|..||+.|++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.01  E-value=3.3e-10  Score=77.02  Aligned_cols=45  Identities=49%  Similarity=0.939  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      +||++||++|+.++.+||..+|..||..|++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999768999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.00  E-value=5.5e-10  Score=115.89  Aligned_cols=115  Identities=23%  Similarity=0.335  Sum_probs=94.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC---------------C--------HHHHHHHhcCCCccccchhhhcccCCCC-CC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQ---------------N--------WNSIAEKLQGRSGKSCRLRWFNQLDPRI-NR   74 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~---------------n--------W~~IA~~lpgRt~kQCr~Rw~n~L~p~i-~k   74 (331)
                      ..+-+.|+++||+.|...|..|-..               +        |+.|.+.||-|+...++.+-++..+|.- .+
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence            4556899999999999999877110               1        7888888999999999884444444433 89


Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 020106           75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRS  134 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~~~~~~~~s  134 (331)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++.........+..+.
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eE  443 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEE  443 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHH
Confidence            99999999999999999999999999999 999999999999998876544445554443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.98  E-value=1.5e-10  Score=108.85  Aligned_cols=57  Identities=21%  Similarity=0.443  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      ..+.|.+++++||+|||++|++++..||. .|..||+.|||||..+|+.||..+|+..
T Consensus        70 N~L~P~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         70 NYLRPSVKRGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HhhchhcccCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            35678999999999999999999999996 5999999999999999999999887744

>PLN03091 hypothetical protein; Provisional

Probab=98.95  E-value=3e-10  Score=114.06  Aligned_cols=56  Identities=23%  Similarity=0.442  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCC
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP   70 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p   70 (331)
                      ..+.|.++||+||+|||++|++++.+||. +|.+||+.|+||+..+|+.||+.+|+.
T Consensus        59 NyLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         59 NYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             hccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999999997 599999999999999999999987754

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.66  E-value=1.7e-08  Score=94.38  Aligned_cols=55  Identities=25%  Similarity=0.520  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      ...+.|.++||.||+|||++|+++...+|.+ |.+||++|||||...++.+|+.+|
T Consensus        53 ~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTDNeIKN~Wnt~l  107 (238)
T KOG0048|consen   53 TNYLRPDLKRGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTDNEVKNHWNTHL  107 (238)
T ss_pred             hcccCCCccCCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCHHHHHHHHHHHH
Confidence            3568899999999999999999999999975 999999999999999999986665

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.30  E-value=9.9e-08  Score=98.19  Aligned_cols=101  Identities=28%  Similarity=0.525  Sum_probs=87.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCC--CCCCCCCCHHHHHHHHHHHHHhC-
Q 020106           17 TSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP--RINRRPFTEDEEERLLAAHRIHG-   93 (331)
Q Consensus        17 ~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p--~i~kg~WT~EED~~Llelv~~~G-   93 (331)
                      .+...+|.||+||++.|..++..+|. .|..|.+.+ +|-+..||+||+++...  .+++++|+.||+.+|...+..+- 
T Consensus       286 ~~f~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~  363 (512)
T COG5147         286 NIFEQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRL  363 (512)
T ss_pred             hHHhhhccCccccccccccccccccc-hhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHH
Confidence            34556899999999999999999996 599999987 89999999999999998  67888999999999998876432 


Q ss_pred             -------ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           94 -------NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        94 -------~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                             ..|..|++.+++|...+|+.++.++.
T Consensus       364 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~  396 (512)
T COG5147         364 EAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLI  396 (512)
T ss_pred             HHhhhhhhhHHHHHHhhhccccCCCCCcccccc
Confidence                   45999999999999988888776543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.81  E-value=2e-05  Score=79.51  Aligned_cols=51  Identities=22%  Similarity=0.527  Sum_probs=47.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      ++-...||.+|+-+|+++++.||.+||..||.+|..|+...|+++|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            455678999999999999999999999999999999999999999999763

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.71  E-value=4.7e-05  Score=57.08  Aligned_cols=48  Identities=19%  Similarity=0.365  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHhc-CC-Cccccchhhhccc
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNW---NSIAEKLQ-GR-SGKSCRLRWFNQL   68 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW---~~IA~~lp-gR-t~kQCr~Rw~n~L   68 (331)
                      ++-.||+||.++++++++.+|.++|   +.|++.|. .| |..||+.|+..|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998899   99999884 45 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.55  E-value=0.00018  Score=53.98  Aligned_cols=46  Identities=30%  Similarity=0.409  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-hh---HHHhhcCCC-C-CHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGN-KW---ALIARLFPG-R-TDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~-kW---s~IAk~Lpg-R-T~nq~KnRW~~il  119 (331)
                      +-.||+||..++++++..+|. +|   ..|++.|.. | |..||+.|...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            568999999999999999996 99   999998853 5 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.50  E-value=0.00015  Score=73.29  Aligned_cols=48  Identities=31%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                      +-...||.+||.+|++++..|| ++|..||.+++.|+..+||.||..++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            4456899999999999999999 89999999999999999999998654

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.24  E-value=0.0011  Score=61.34  Aligned_cols=98  Identities=22%  Similarity=0.427  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCccccchhhhcccC-CCC--------------------CCCCCCH
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKL---QGRSGKSCRLRWFNQLD-PRI--------------------NRRPFTE   79 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~l---pgRt~kQCr~Rw~n~L~-p~i--------------------~kg~WT~   79 (331)
                      +|++++|-.|+.+|..-.  +-..|+.-+   ..-|-.-+.+||..+|. |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999999876  477787765   34566777889998773 221                    4568999


Q ss_pred             HHHHHHHHHHHHhCC---hhHHHhh-----cCCCCCHHHHHHHHHHHHHHHH
Q 020106           80 DEEERLLAAHRIHGN---KWALIAR-----LFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        80 EED~~Llelv~~~G~---kWs~IAk-----~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      +|+++|.........   .+.+|-.     +-++||+.++.++|..+.+...
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999997665543   3666643     4578999999999996654443

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.0003  Score=72.54  Aligned_cols=54  Identities=28%  Similarity=0.432  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106           72 INRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      ++.+.|+.-||+.|..+|.+|| ++|++|+..|+-+|+.||++||...+....+.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~   59 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK   59 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence            5678999999999999999999 67999999999999999999999888655444

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.18  E-value=0.00051  Score=61.43  Aligned_cols=53  Identities=19%  Similarity=0.309  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---C----hhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           73 NRRPFTEDEEERLLAAHRIHG---N----KWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G---~----kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      ....||.|||.+|.+.|..|=   .    -...+++.| +||+.+|.=|||..+|++....
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            457899999999999998873   2    288999999 9999999999999999876554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.01  E-value=0.00051  Score=70.14  Aligned_cols=46  Identities=22%  Similarity=0.531  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ   67 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~   67 (331)
                      ....||.+|..+|++.|+.||. +|.+||.++..|+..||..|+.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCCCCHHHHHHHHHcC
Confidence            4568999999999999999997 699999999999999999999773

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.00071  Score=53.06  Aligned_cols=52  Identities=25%  Similarity=0.495  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHHH------hCC--------hhHHHhhcCC----CCCHHHHHHHHHHHHHHHHHh
Q 020106           74 RRPFTEDEEERLLAAHRI------HGN--------KWALIARLFP----GRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~------~G~--------kWs~IAk~Lp----gRT~nq~KnRW~~ilkrk~~~  125 (331)
                      +..||.+|...||+++..      ++.        -|..||..|.    .||+.||+++|+.+.++-...
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~   70 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKI   70 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            357999999999999877      211        3999998763    599999999999977665533

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.94  E-value=0.00065  Score=70.45  Aligned_cols=48  Identities=27%  Similarity=0.646  Sum_probs=43.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ   67 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~   67 (331)
                      ..-++.||.+|..+|+++|+.||. +|.+||.++.+|+..||..|+.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCCCCHHHHHHHHHhc
Confidence            445788999999999999999997 699999999999999999999764

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.86  E-value=0.0014  Score=50.33  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Ch-hHHHhhcCC-CCCHHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG--------NK-WALIARLFP-GRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G--------~k-Ws~IAk~Lp-gRT~nq~KnRW~~ilkrk~  123 (331)
                      +.+||.|||.+|++.|..+.        ++ |.++++.-| .+|-.+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997642        22 999999877 8999999999987776554

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.76  E-value=0.0071  Score=67.73  Aligned_cols=109  Identities=15%  Similarity=0.332  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccch-------hhhc------cc----------------------
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRL-------RWFN------QL----------------------   68 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~-------Rw~n------~L----------------------   68 (331)
                      .|+..+=..++.+.++||..+...||..|.+++...++.       ||..      ++                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999998888766642       2211      11                      


Q ss_pred             ---------------CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhh------------cCCCCCHHHHHHHHHHHHH
Q 020106           69 ---------------DPRINRRPFTEDEEERLLAAHRIHG-NKWALIAR------------LFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        69 ---------------~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk------------~LpgRT~nq~KnRW~~ilk  120 (331)
                                     .+..++..||+|||..|+-++.+|| .+|.+|-.            ++..||+..|..|-+.+++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           1223445699999999999999999 67999843            3468999999999999999


Q ss_pred             HHHHhhhhhcCC
Q 020106          121 RKQREQSKLCGK  132 (331)
Q Consensus       121 rk~~~~~~~~~~  132 (331)
                      -..++......+
T Consensus       986 ~~~~e~~~~~~~  997 (1033)
T PLN03142        986 LIEKENQEYDER  997 (1033)
T ss_pred             HHHHHHhhhhhh
Confidence            887765544433

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.66  E-value=0.0018  Score=66.24  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      ..||.+|..+|++.+..||..|.+||+++++||..||--||-++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            48999999999999999999999999999999999999998653

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.54  E-value=0.0031  Score=57.08  Aligned_cols=53  Identities=17%  Similarity=0.314  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCh-------hHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           73 NRRPFTEDEEERLLAAHRIHGNK-------WALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~k-------Ws~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      ....||.|||.+|.+.|..|+..       ...++..| +||..+|.-|||.+++++....
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~   63 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQ   63 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHH
Confidence            46789999999999999888732       67777888 9999999999999998776543

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.51  E-value=0.0033  Score=65.39  Aligned_cols=46  Identities=22%  Similarity=0.336  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      .+..||++|..+|++++..||-+|.+||.++++||..+|--|+..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999999988643

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.38  E-value=0.003  Score=48.63  Aligned_cols=50  Identities=26%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------CC--HHHHHHHhc-CCCccccchhhhcccCCC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGA------QN--WNSIAEKLQ-GRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~------~n--W~~IA~~lp-gRt~kQCr~Rw~n~L~p~   71 (331)
                      |-++|.|||+.|++.|..+..      +|  |.++++.-+ .+|-.+-|+||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976521      12  999999887 899999999999998764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.33  E-value=0.0023  Score=50.13  Aligned_cols=47  Identities=32%  Similarity=0.634  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C---CC----CHHHHHHHh----cCCCccccchhhhccc
Q 020106           22 RGHWRPAEDEKLRQLVEQ--Y----G---AQ----NWNSIAEKL----QGRSGKSCRLRWFNQL   68 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~k--y----G---~~----nW~~IA~~l----pgRt~kQCr~Rw~n~L   68 (331)
                      |..||.+|...|+.++..  +    +   ..    -|..||..|    ..|++.||+.||.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            457999999999999987  2    1   11    299999998    3599999999998854

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.08  E-value=0.0047  Score=55.34  Aligned_cols=48  Identities=21%  Similarity=0.434  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---C---CHHHHHHHhcCCCccccchhhhcccC
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGA---Q---NWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~---~---nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      +.-.||.|||.+|.+.|-+|-.   .   .+.+++..+ +||...|.-||+.+++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            4568999999999999999822   1   388899988 8999999999999886

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.97  E-value=0.011  Score=45.67  Aligned_cols=47  Identities=34%  Similarity=0.493  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----CCC-----------CHHHHHHHh-----cCCCccccchhhhccc
Q 020106           22 RGHWRPAEDEKLRQLVEQY-----GAQ-----------NWNSIAEKL-----QGRSGKSCRLRWFNQL   68 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~ky-----G~~-----------nW~~IA~~l-----pgRt~kQCr~Rw~n~L   68 (331)
                      +..||++|...|+++|++|     +..           -|..|+..|     +.|+..||+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            5689999999999999988     211           299999988     3599999999998864

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.97  E-value=0.02  Score=44.17  Aligned_cols=52  Identities=25%  Similarity=0.491  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------hhHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHh
Q 020106           74 RRPFTEDEEERLLAAHRIHG----N-------------KWALIARLF-----PGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G----~-------------kWs~IAk~L-----pgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      ...||.+|.+.|++++.+|.    +             -|..|+..|     +.||..+||.+|..+....+++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35799999999999998863    1             299999854     2499999999999987765543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.53  E-value=0.014  Score=57.71  Aligned_cols=46  Identities=24%  Similarity=0.420  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                      -..|+.+|+.+|++++...| ++|..||.+++.|+..+||.||-.+.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            35799999999999999999 88999999998899999999997654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.44  E-value=0.0095  Score=58.78  Aligned_cols=48  Identities=21%  Similarity=0.479  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      --.|+..|+-+|++..+..|.+||..||.++..|+...|+++|.+++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            456999999999999999999999999999999999999999999875

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.65  E-value=0.018  Score=52.11  Aligned_cols=49  Identities=18%  Similarity=0.472  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHhcCCCccccchhhhcccC
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQN------WNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~n------W~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      .+...||.|||.+|.+.|-.|+...      ...++..| +|+..+|..||+.+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            3567899999999999999886432      55566666 7999999999977765

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=94.41  E-value=0.055  Score=53.08  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CChhHHHhhcCC----CCCHHHHHHHHHHHHHHHHHhhhhh
Q 020106           74 RRPFTEDEEERLLAAHRIH----------GNKWALIARLFP----GRTDNAVKNHWHVIMARKQREQSKL  129 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~----------G~kWs~IAk~Lp----gRT~nq~KnRW~~ilkrk~~~~~~~  129 (331)
                      ...|+.+|-..||++..++          +.-|..||+.+.    -||+.+||++|.++.++.++.+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            4789999999999998653          234999998442    3999999999999998887776543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.94  E-value=0.11  Score=44.37  Aligned_cols=54  Identities=19%  Similarity=0.413  Sum_probs=43.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----hhHHHhh------------cCCCCCHHHHHHHHHHHHHHHHH
Q 020106           71 RINRRPFTEDEEERLLAAHRIHGN----KWALIAR------------LFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        71 ~i~kg~WT~EED~~Llelv~~~G~----kWs~IAk------------~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      ..++..||+|||.-|+-++.+||-    .|..|-.            .+..||+.+|..|-+.+++-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            566789999999999999999996    7988865            34679999999999999886543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.78  E-value=0.12  Score=52.18  Aligned_cols=83  Identities=14%  Similarity=0.308  Sum_probs=61.6

Q ss_pred             HHHHHHHhcCCCccccchhhhcccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCChhHHH
Q 020106           45 WNSIAEKLQGRSGKSCRLRWFNQLDPR-------------------------INRRPFTEDEEERLLAAHRIHGNKWALI   99 (331)
Q Consensus        45 W~~IA~~lpgRt~kQCr~Rw~n~L~p~-------------------------i~kg~WT~EED~~Llelv~~~G~kWs~I   99 (331)
                      |.-+.-..+.|...-.-.||.+..++.                         ++...||.||-+-|.++++.|.-+|-.|
T Consensus        76 W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VI  155 (445)
T KOG2656|consen   76 WKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVI  155 (445)
T ss_pred             ceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEE
Confidence            555544445566666666776653221                         1235699999999999999999999999


Q ss_pred             hhc-----CCC-CCHHHHHHHHHHHHHHHHHhhh
Q 020106          100 ARL-----FPG-RTDNAVKNHWHVIMARKQREQS  127 (331)
Q Consensus       100 Ak~-----Lpg-RT~nq~KnRW~~ilkrk~~~~~  127 (331)
                      |..     ++. ||-.++|.||..+.++-.+...
T Consensus       156 aDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  156 ADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             eeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            976     666 9999999999988776665443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.95  E-value=0.27  Score=38.82  Aligned_cols=46  Identities=30%  Similarity=0.494  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------hhHHHhhcCC---C--CCHHHHHHHHHHHHHH
Q 020106           76 PFTEDEEERLLAAHRIH---GN----------KWALIARLFP---G--RTDNAVKNHWHVIMAR  121 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~---G~----------kWs~IAk~Lp---g--RT~nq~KnRW~~ilkr  121 (331)
                      .||+++++.|++++.+.   |+          .|..|+..|.   |  .+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999987543   21          2999988652   2  5889999999876543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.19  E-value=0.31  Score=49.37  Aligned_cols=46  Identities=26%  Similarity=0.453  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      .+|+.+|-++...+...+|..++.|+..+|.|...|||.+|..--|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            4899999999999999999999999999999999999999975443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.37  E-value=0.34  Score=49.03  Aligned_cols=61  Identities=20%  Similarity=0.460  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc--CCC------CCCCCCCHHHHHH
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL--DPR------INRRPFTEDEEER   84 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L--~p~------i~kg~WT~EED~~   84 (331)
                      -+|+.+|-.++..+....|+ ++..|+..+|.|..+|+..+|.+--  +|.      ..+.|+..+|--.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k  434 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNK  434 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhh
Confidence            47999999999999999997 6999999999999999999997743  221      1245666666543

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=88.32  E-value=1.1  Score=31.80  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           79 EDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        79 ~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4678889999999999999999999 9999999998876554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.26  E-value=2.4  Score=43.96  Aligned_cols=50  Identities=12%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      ...||.||-.++-++...||..+.+|-+.||.|+-..+..+|....|.+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999999999999999998877765443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=87.85  E-value=0.55  Score=40.13  Aligned_cols=48  Identities=21%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHh------------cCCCccccchhhhc
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGA---QNWNSIAEKL------------QGRSGKSCRLRWFN   66 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~---~nW~~IA~~l------------pgRt~kQCr~Rw~n   66 (331)
                      ..++..||.+||.-|+-++.+||.   +.|..|...+            ..||+..+..|-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT  108 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence            566788999999999999999999   7899998865            24666666665543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=87.68  E-value=0.83  Score=36.57  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=19.5

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHh
Q 020106           18 STCPRGHWRPAEDEKL--------RQLVEQYGAQNWNSIAEKL   52 (331)
Q Consensus        18 p~~kKG~WT~EED~~L--------~~lV~kyG~~nW~~IA~~l   52 (331)
                      |.-..|-||+|+|+.|        .+++++||   +..|+...
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R~   82 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERRK   82 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHHH
Confidence            5567899999999999        56667777   66676543

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=85.26  E-value=1.7  Score=42.74  Aligned_cols=47  Identities=23%  Similarity=0.409  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHh----cCCCccccchhhhccc
Q 020106           22 RGHWRPAEDEKLRQLVEQY---------GAQNWNSIAEKL----QGRSGKSCRLRWFNQL   68 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~ky---------G~~nW~~IA~~l----pgRt~kQCr~Rw~n~L   68 (331)
                      -..|+.+|-..|+.+....         ....|..||+.+    .-|++.||+.+|.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3689999999999988633         112399999976    2499999999998854

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=84.70  E-value=1.4  Score=34.75  Aligned_cols=44  Identities=27%  Similarity=0.570  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------CHHHHHHHhcC-----CCccccchhhhcc
Q 020106           24 HWRPAEDEKLRQLVEQY---GAQ---------NWNSIAEKLQG-----RSGKSCRLRWFNQ   67 (331)
Q Consensus        24 ~WT~EED~~L~~lV~ky---G~~---------nW~~IA~~lpg-----Rt~kQCr~Rw~n~   67 (331)
                      .||+++++.|++++...   |..         .|..|++.|..     .+..||+.||..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            59999999999988654   222         29999998832     4567888887553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-26
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		5e-25
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		6e-25
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-25
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		6e-20
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-16
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-12
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-09
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-09
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-08
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-08
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		1e-06
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		6e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		6e-05
2d9a_A	60	Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi		5e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 72/101 (71%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+K+ +LV++YG + W  IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 66
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH++ GN+WA IA+L PGRTDNAVKNHW+  + RK
Sbjct: 67  DRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 72/101 (71%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 72/101 (71%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  110 bits (276), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 72/101 (71%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ + V++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNAVKNHW+  M RK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G +  AED+ +R+ V++ G QNW  I   L  RS K CR RWFN LDP + +  +T +E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +E +   +   G+KW++IA+L PGRTDNA+KN W+  ++++
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 27  PAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLL 86
           P EDE L++ V Q+G+ +W  IA     R+ + CR RW N L P I+  P+T +E+  L+
Sbjct: 16  PEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74
Query: 87  AAHRIHGNKWALIARLFPGRTDNAVKNHWHVI 118
              + +G +WA+IA+ FPGRTD  +KN W  I
Sbjct: 75  QKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%)
Query: 29  EDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAA 88
           ED KL+QLV +YGA++W  I++ +  R+ + CR RW N ++P +   P++ +E+  L   
Sbjct: 8   EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67
Query: 89  HRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 127
           +  +G KW  I++    R+DN ++N W +I   + + Q 
Sbjct: 68  YAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 72  INRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           + +  +TE+E+  L  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 72  INRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           + +  +TE+E+  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   ED++L +LV++YG + W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFT 78
          WR  EDE L+  V +YG   W+ IA  L  +S K C+ RW+  LDP I +  ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +  W   EDEKL++LVEQ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +  W   EDEKL++LVEQ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL 68
          W   EDE+LR LV Q+G Q+W  +A     R+ + C+ RW   L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-63
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-05
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-62
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-62
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-61
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	9e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-37
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-08
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-33
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-26
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-26
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-13
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-12
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	6e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	5e-07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	7e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-06
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	1e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	3e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	9e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  195 bits (497), Expect = 5e-63
 Identities = 44/107 (41%), Positives = 68/107 (63%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G +  AED+ +R+ V++ G QNW  I   L  RS K CR RWFN LDP + +  +T +E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSK 128
           +E +   +   G+KW++IA+L PGRTDNA+KN W+  ++++    S 
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSN 108

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +  W P EDE + +   + G++ W+ IA+ + GR+  + + RW + +  RI+        
Sbjct: 54  KHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRISTNS----N 108

Query: 82  EERLLAAHRIHGNKWALIARLF 103
            + +L   R    K A + +  
Sbjct: 109 HKEILLPDRSKKRKAADVPKKL 130

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  194 bits (495), Expect = 1e-62
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 14  KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN 73
           + +     +  + P EDE L++ V Q+G  +W  IA     R+ + CR RW N L P I+
Sbjct: 3   QVNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSIS 61

Query: 74  RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKR 133
             P+T +E+  L+   + +G +WA+IA+ FPGRTD  +KN W  I  +    Q++   + 
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

Query: 134 SHQ 136
            H 
Sbjct: 122 HHH 124

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  193 bits (492), Expect = 2e-62
 Identities = 33/105 (31%), Positives = 61/105 (58%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +  +   ED KL+QLV +YGA++W  I++ +  R+ + CR RW N ++P +   P++ +E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ 126
           +  L   +  +G KW  I++    R+DN ++N W +I   + + Q
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  190 bits (486), Expect = 3e-61
 Identities = 49/101 (48%), Positives = 71/101 (70%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ + V++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNAVKNHW+  M RK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  189 bits (482), Expect = 5e-61
 Identities = 49/101 (48%), Positives = 72/101 (71%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  185 bits (472), Expect = 9e-59
 Identities = 49/101 (48%), Positives = 72/101 (71%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +G W   ED+++ +LV++YG + W+ IA+ L+GR GK CR RW N L+P + +  +TE+E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117

Query: 82  EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  128 bits (325), Expect = 8e-37
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
           +  W   EDEKL++LVEQ G  +W  IA  L  R+   C+ RW   L+P + + P+T++E
Sbjct: 6   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEE 65

Query: 82  EERLLAAHRIHGNK-WALIARLFPGRTDNAVKNHWH 116
           ++R++   + +G K W++IA+   GR     +  WH
Sbjct: 66  DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 101

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 22  RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRI 72
           +  W   ED  + Q  ++ G + W  IA+ L GR+  + +  W + +  ++
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 72  INRRPFTEDEEERLLAAHRIHGNK-WALIARLFPGRTDNAVKNHWH 116
           + +  +T +E+E+L      +G   W +IA   P RTD   ++ W 
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 49

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  115 bits (290), Expect = 9e-33
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR 74
          SS S+   G WR  EDE L+  V +YG   W+ IA  L  +S K C+ RW+  LDP I +
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61

Query: 75 RPFTEDEE 82
            ++    
Sbjct: 62 TEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
                  +   E+E L AA   +G N+W+ IA L   ++    K  W+
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWY 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  101 bits (254), Expect = 1e-27
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   ED++L +LV++YG + W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 97.6 bits (244), Expect = 3e-26
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +  W   EDEKL++LVEQ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 72  INRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
           + +  +T +E+E+L      +G + W +IA   P RTD   ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 97.3 bits (243), Expect = 4e-26
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          S+ +  +  W   EDE+LR LV Q+G Q+W  +A     R+ + C+ RW   L  
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
               +  +T +E+E+L A  R  G   W  +A  FP RTD   +  W 
Sbjct: 4   GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWL 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR 74
          SS S+  +  W   E+EKL  L +    Q W +IA  + GR+   C   +   LD    R
Sbjct: 2  SSGSSGKKTEWSREEEEKLLHLAKLMPTQ-WRTIAPII-GRTAAQCLEHYEFLLDKAAQR 59

Query: 75 R 75
           
Sbjct: 60 D 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 69  DPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 127
                +  ++ +EEE+LL   ++   +W  IA +  GRT      H+  ++ +  +  S
Sbjct: 4   GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPI-IGRTAAQCLEHYEFLLDKAAQRDS 61

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 59.3 bits (144), Expect = 6e-12
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 69
           S+ +     W   E+  L + V   G  NW  +A ++  ++ + C   +     
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 73  NRRPFTEDEEERLLAAHRIHGNK-WALIARLFPGRTDNAVKNHWH 116
               +T  EE  LL A    G   W  +A     +T    + H+ 
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAE--KLQGRSGKSCRLRWFN 66
          R  W   ED+ LR  V +YG  NW+ I    K   R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 74  RRPFTEDEEERLLAAHRIHGN-KWALIARL--FPGRTDNAVKNHWHVIMARK 122
           R+ +  +E++ L +  R +G   W+ I     F  RT   +K+ W  +   K
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAE--KLQGRSGKSCRLRWFNQLDPR 71
           S+T+   +  W   E E ++  V++YG  NW +I++      R+    + RW       
Sbjct: 3  DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62

Query: 72 IN 73
          +N
Sbjct: 63 MN 64

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 66  NQLDPRINRRPFTEDEEERLLAAHRIHGN-KWALIARLFP--GRTDNAVKNHWHVIM 119
           +       ++ +T +E E + A  + +G   WA I++ +P   RT   +K+ W  + 
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAE--KLQGRSGKSCRLRWFNQLDPRIN 73
          +  W   E E ++  V++YG  NW +I++      R+    + RW       +N
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 8e-07
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 74  RRPFTEDEEERLLAAHRIHGN-KWALIARLFP--GRTDNAVKNHWHVIM 119
           ++ +T +E E + A  + +G   WA I++ +P   RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE--KLQGRSGKSCRLRWFN 66
           R  W   ED+ LR  V +YG  NW+ I    K   R+    + RW  
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHGN-KWALIARL--FPGRTDNAVKNHWHVIMARKQREQ 126
               R+ +  +E++ L +  R +G   W+ I     F  RT   +K+ W  +   K    
Sbjct: 6   RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65

Query: 127 SK 128
             
Sbjct: 66  DS 67

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 61  RLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWH 116
                +     +  + +TE+E          HG  W+ IAR+   +T +  KN + 
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF 58

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN 66
            S         W   E    ++ + ++G +NW++IA  +  ++   C+  +FN
Sbjct: 7  HSSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRW 64
           G + P E EKL++L  ++G  +W +I   L GRS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 52  LQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAV 111
           +      S           R +   +T +E E+L      HGN WA I     GR+ ++V
Sbjct: 1   MHHHHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSV 59

Query: 112 KNHWHVIMARKQR 124
           K+   ++      
Sbjct: 60  KDRCRLMKDTCNT 72

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRE 125
                  +T +E+E         G +W  I++L   RT   VK++       K + 
Sbjct: 5   SSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 5  GAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRW 64
          G+  S      S        W   E   L + +E Y   +WN ++E +  R+   C L +
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

Query: 65 FN 66
            
Sbjct: 60 LR 61

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 65  FNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHW 115
             +       R +TE E   LL A  ++ + W  ++     RT +    H+
Sbjct: 9   LAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 21  PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE----KLQGRSGKSCRLRWFN-----QLDPR 71
            R  +  AE E L + VE  G   W  +          R+    + +W        + P+
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 72  INR-RPFTEDEEERLLAAHRIHGNKWA 97
             R  P  +D  +R+LAAH     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE----KLQGRSGKSCRLRWFN-----QLDPR 71
           R  +  AE E L Q VE+ G   W  +          R+    + +W       ++ P+
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 72 INR-RPFTEDEEERLLAAHRIHGNKWA 97
            R  P  ++   R+L AH     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 71  RINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQRE 125
           R  RRPF+  E E L+ A    G  +W  +          RT   +K+ W  ++   +  
Sbjct: 10  RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS 69

Query: 126 QSKLCGKRSHQDTGNIISDQNFIHARRSRSQ 156
             +  G+   Q+  N + + +    ++   Q
Sbjct: 70  PQQRRGEPVPQELLNRVLNAHGYWTQQQMQQ 100

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 21  PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE----KLQGRSGKSCRLRWFN-----QLDPR 71
            R  +  AE E L + VE  G   W  +       +  R+    + +W        + P+
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 72  INR-RPFTEDEEERLLAAHRIHGNKWA 97
             R  P  ++  +R+LAA        +
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 71  RINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQRE 125
           R  RRPFT  E E L+ A    G  +W  +          RT   +K+ W  ++      
Sbjct: 28  RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIA 87

Query: 126 QSK 128
             +
Sbjct: 88  PQQ 90

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAE----KLQGRSGKSCRLRWFN-----QLDPRINR- 74
          +  AE E L + VE  G   W  +          R+    + +W        + P+  R 
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 75 RPFTEDEEERLLAAHRIHGNK 95
           P  +D  +R+LAAH     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 5  GAGSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGA---QNWNSIAEKLQGRSGKSCR 61
          G+  S  + +   +      W   + + L   ++QY       W+ IA  +  +S + C 
Sbjct: 1  GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCI 60

Query: 62 LRW 64
           R+
Sbjct: 61 ARY 63

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 66  NQLDPRINRRPFTEDEEERLLAAHRIH----GNKWALIARLFPGRTDNAVKNHWHVIMA 120
            +   R    P+T+++++ L  A + +     + W  IAR  P ++       + ++++
Sbjct: 10  RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKL-QGRSGKSCRLRWFN 66
          +W   E+  L    E  G  NW  IA+ +   R+ + CR  +  
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 69  DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLF-PGRTDNAVKNHWH 116
                   +  DEE  L+ A    G   WA IA      RT    ++H+ 
Sbjct: 4   GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 15  SSTSTCPRGHWRPAEDEKLRQLV-----EQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 69
            +  +  +  +   EDE +  +V      +     ++ I+  +   +G S R R+   L 
Sbjct: 1   GALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS 60

Query: 70  PRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHW 115
            R+       D+  +L+      GN               ++K  +
Sbjct: 61  KRLEYVY-EVDKFGKLVRDD--DGNLIKT------KVLPPSIKRKF 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 53/342 (15%), Positives = 91/342 (26%), Gaps = 121/342 (35%)

Query: 31  EKLRQLVEQYGAQN--------WNS-IAEKLQGRSGKSCRL----RW---FNQLDPRI-- 72
            +LR+L++    +N         N+             C++    R+    + L      
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS----CKILLTTRFKQVTDFLSAATTT 287

Query: 73  ------NRRPFTEDEEERLLA-------------AHRIHGNKWALIARL---FPGRTDNA 110
                 +    T DE + LL                  +  + ++IA          DN 
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN- 346

Query: 111 VKNHWHVIMARKQREQSKLCGKRSHQDTGNIISDQNFIHARRSRSQDAMLSSKFGFDQNS 170
               W      K     KL           II  ++ ++         M      F  ++
Sbjct: 347 ----W------KHVNCDKL---------TTII--ESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 171 RIFEFRNPNHDRTFAVSPPPSSSLTWAFGAAPIVTSSNNSSVDLSRREAGDFFNTSTKVS 230
            I               P    SL W                D+ + +     N   K S
Sbjct: 386 HI---------------PTILLSLIWF---------------DVIKSDVMVVVNKLHKYS 415

Query: 231 --DQHPYRSCYPNSSAYGSYRGSSSFGVTNYRRFVPSPFGYVKVGDDYESHGVIKKEVIK 288
             ++ P  S     S Y   +         +R  V     Y  +   ++S  +I   +  
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---Y-NIPKTFDSDDLIPPYL-- 469

Query: 289 FSDN-SPSHLNLRLSTQQAQADDQSIKHHEEVP-----FIDF 324
             D    SH+   L           I+H E +      F+DF
Sbjct: 470 --DQYFYSHIGHHLKN---------IEHPERMTLFRMVFLDF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.77
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.76
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.72
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.72
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.66
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.65
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.59
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.56
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.55
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.49
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.21
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.46
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.46
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.45
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.4
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.39
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.01
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.29
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.28
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.26
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.25
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.23
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.21
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.15
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.07
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.95
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.94
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.91
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.88
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.87
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.82
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.73
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.59
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.51
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.48
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.39
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.36
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.33
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.23
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.11
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.37
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.02
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.99
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.96
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.89
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.7
2crg_A	70	Metastasis associated protein MTA3; transcription	97.59
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.59
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.49
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.43
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.39
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.33
2crg_A	70	Metastasis associated protein MTA3; transcription	97.27
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.26
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.95
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.99
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.91
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.43
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.03
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.3
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.09
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	93.67
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.34
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	85.77

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=1.9e-34  Score=236.58  Aligned_cols=104  Identities=31%  Similarity=0.656  Sum_probs=100.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIAR  101 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk  101 (331)
                      ||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHh
Q 020106          102 LFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus       102 ~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      +|||||+++||+||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999876543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.7e-34  Score=235.24  Aligned_cols=103  Identities=48%  Similarity=0.988  Sum_probs=99.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHH
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALI   99 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~I   99 (331)
                      +++|+||+|||++|+++|++||..+|..||+.|++|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            67999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHH
Q 020106          100 ARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus       100 Ak~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      |++|||||+++||+||+.+++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999998875

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=9.5e-34  Score=238.76  Aligned_cols=109  Identities=46%  Similarity=0.930  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHG   93 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G   93 (331)
                      +...|.+++|+||+|||++|+++|++||.++|..||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus        19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence            45778999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           94 NKWALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        94 ~kWs~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      ++|+.||++|||||+++||+||+.+++++
T Consensus        99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999998775

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.1e-33  Score=236.74  Aligned_cols=106  Identities=37%  Similarity=0.744  Sum_probs=101.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCh
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNK   95 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~k   95 (331)
                      ..+..+||+||+|||++|+++|++||. +|..||+.|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            356788999999999999999999998 8999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           96 WALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        96 Ws~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      |+.||++|||||+++||+||+.++++.
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999988763

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=1.9e-33  Score=238.16  Aligned_cols=104  Identities=41%  Similarity=0.832  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIAR  101 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk  101 (331)
                      ||+||+|||++|+++|.+||..+|..||..||+|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            79999999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHh
Q 020106          102 LFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus       102 ~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      +|||||+++||+||+.+++++...
T Consensus        82 ~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998876543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.3e-31  Score=233.14  Aligned_cols=108  Identities=45%  Similarity=0.936  Sum_probs=103.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN   94 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~   94 (331)
                      ...|.+++|+||+|||++|+++|++||..+|..||+.||+|++.||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus        51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            46788999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           95 KWALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        95 kWs~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      +|+.||++|||||+++|||||+.+++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999998775

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.5e-29  Score=220.07  Aligned_cols=102  Identities=32%  Similarity=0.736  Sum_probs=59.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhH
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN-KWA   97 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs   97 (331)
                      .+++++||+|||++|+++|++||..+|..||+.|++|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            4678999999999999999999988999999999999999999999999999999999999999999999999996 699


Q ss_pred             HHhhcCCCCCHHHHHHHHHHHHH
Q 020106           98 LIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        98 ~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      .||++|||||+.||++||+.++.
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~  105 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLN  105 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhC
Confidence            99999999999999999998764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.5e-22  Score=154.33  Aligned_cols=67  Identities=37%  Similarity=0.758  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHH
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEE   82 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED   82 (331)
                      ..|.+++|+||+|||++|+++|++||..+|..||.+|++|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4578899999999999999999999988999999999999999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=1.6e-20  Score=157.96  Aligned_cols=73  Identities=26%  Similarity=0.690  Sum_probs=49.5

Q ss_pred             HHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           48 IAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        48 IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      ||+.||+|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||++|||||+.||++||..++.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence            79999999999999999999999999999999999999999999996 69999999999999999999998664

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.77  E-value=3.1e-19  Score=165.33  Aligned_cols=106  Identities=20%  Similarity=0.319  Sum_probs=93.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhcCCCccccchhhhcccCCCCC-------------------
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQN-----WNSIAEKLQGRSGKSCRLRWFNQLDPRIN-------------------   73 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~n-----W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~-------------------   73 (331)
                      +..+|++||+|||++|+++|+++|..+     |.+||+.|||||+.|||+||+.+|.+.++                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            467899999999999999999998753     99999999999999999999999999987                   


Q ss_pred             ----------CCCCCHHHHHHHHHHHHH---------------------------------hCC----------------
Q 020106           74 ----------RRPFTEDEEERLLAAHRI---------------------------------HGN----------------   94 (331)
Q Consensus        74 ----------kg~WT~EED~~Llelv~~---------------------------------~G~----------------   94 (331)
                                +..||.|||-.|+..+.+                                 +|.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      899999999999998876                                 121                


Q ss_pred             ---------hhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106           95 ---------KWALIARLFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        95 ---------kWs~IAk~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                               .|.+||+.+|+||.+++|+||+.+++..-
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~g  201 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYG  201 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHC
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Confidence                     69999999999999999999999887663

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.76  E-value=8.2e-19  Score=147.97  Aligned_cols=88  Identities=23%  Similarity=0.350  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhcccC-----CCCCCC-CCCHH
Q 020106           11 DATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQLD-----PRINRR-PFTED   80 (331)
Q Consensus        11 ~~~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L~-----p~i~kg-~WT~E   80 (331)
                      .......+..++++||+|||+.|+++|++||.++|..|++.+    ++||..+|++||+++|+     |.++++ +|++|
T Consensus         6 ~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e   85 (121)
T 2juh_A            6 SKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD   85 (121)
T ss_dssp             CCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHH
T ss_pred             CCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHH
Confidence            334446778899999999999999999999998999999995    89999999999999998     999999 99999


Q ss_pred             HHHHHHHHHHHhCChhHH
Q 020106           81 EEERLLAAHRIHGNKWAL   98 (331)
Q Consensus        81 ED~~Llelv~~~G~kWs~   98 (331)
                      |+.+|++++..+|++|++
T Consensus        86 ~~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           86 LLDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHccchhc
Confidence            999999999999999987

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=5.4e-18  Score=125.33  Aligned_cols=58  Identities=33%  Similarity=0.736  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCC
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN   73 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~   73 (331)
                      ..|.+++++||+|||++|+++|.+||..+|..||++|++|+..||++||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            3578899999999999999999999987899999999999999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.72  E-value=1.2e-17  Score=140.96  Aligned_cols=82  Identities=22%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhccc-----CCCCCCCCCCHHH-HH
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQL-----DPRINRRPFTEDE-EE   83 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L-----~p~i~kg~WT~EE-D~   83 (331)
                      +......++++||+|||+.|+++|++||.++|..|++.+    ++||..||++||++++     +|.++++.|+++| +.
T Consensus        23 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~  102 (122)
T 2roh_A           23 PDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLD  102 (122)
T ss_dssp             CCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHH
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence            334567789999999999999999999998999999975    8999999999999999     8999999999999 89


Q ss_pred             HHHHHHHHhCCh
Q 020106           84 RLLAAHRIHGNK   95 (331)
Q Consensus        84 ~Llelv~~~G~k   95 (331)
                      +|++++..||++
T Consensus       103 ~v~~~h~~~g~~  114 (122)
T 2roh_A          103 RVLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHhhH
Confidence            999999999975

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=5.1e-18  Score=131.52  Aligned_cols=58  Identities=26%  Similarity=0.389  Sum_probs=47.0

Q ss_pred             cchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           60 CRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        60 Cr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      +--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            44589999999999999999999999999999999999999999 99999999999865

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.71  E-value=6.7e-18  Score=128.37  Aligned_cols=65  Identities=23%  Similarity=0.374  Sum_probs=59.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccCCCCCCCCCC
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLDPRINRRPFT   78 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~p~i~kg~WT   78 (331)
                      +.+.+..++++||+|||++|+++|++||.++|..||+.|+  +|++.||++||+++|+|.+.++..+
T Consensus         2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4567788999999999999999999999889999999999  9999999999999999999988654

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=9.4e-18  Score=120.71  Aligned_cols=52  Identities=46%  Similarity=1.019  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      +++|+||+|||++|+++|.+||.++|..||+.|++|++.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999888999999999999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.68  E-value=1.5e-17  Score=119.56  Aligned_cols=52  Identities=40%  Similarity=0.815  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      +++++||+|||++|+++|++||.++|..||+.|++|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999999999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.66  E-value=1.1e-16  Score=122.72  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106           68 LDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        68 L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.+++++.+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999887654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=120.30  Aligned_cols=59  Identities=20%  Similarity=0.436  Sum_probs=55.8

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           67 QLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        67 ~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      +|+|.+++++||+|||++|+++|.+||.+|.+||+ |+|||++|||+||+.++++..+..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            79999999999999999999999999999999999 889999999999999999877554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.65  E-value=6.4e-17  Score=122.06  Aligned_cols=55  Identities=24%  Similarity=0.486  Sum_probs=50.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccCCCCC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLDPRIN   73 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~p~i~   73 (331)
                      ..+|++||+|||++|+++|++||.++|..||+.++  +|++.||++||+++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999989999999976  99999999999999998765

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.64  E-value=2.1e-16  Score=117.20  Aligned_cols=55  Identities=16%  Similarity=0.433  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           17 TSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        17 ~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      .+.+.+++||+|||++|+++|++||..+|.+||++|++|++.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4578999999999999999999999888999999999999999999999999864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-16  Score=119.16  Aligned_cols=60  Identities=30%  Similarity=0.498  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCC
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRP   76 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~   76 (331)
                      .+.|.+++++||+|||++|+++|+.||. +|.+||+ ++||+..||++||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            4678999999999999999999999997 7999999 8899999999999999998876653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=5.1e-16  Score=112.25  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccC
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLD   69 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~   69 (331)
                      ++++||+|||++|+++|++||.++|..||+.|+  +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            589999999999999999999889999999999  9999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.59  E-value=9.5e-16  Score=113.15  Aligned_cols=51  Identities=25%  Similarity=0.489  Sum_probs=47.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhccc
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQL   68 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L   68 (331)
                      .++.+++||+|||++|+++|++||..+|..||++|+ +|++.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456689999999999999999999889999999999 999999999999875

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=1.6e-15  Score=112.01  Aligned_cols=53  Identities=28%  Similarity=0.584  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkr  121 (331)
                      +|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+.+|+.
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p   56 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG   56 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence            5788999999999999999999999 6999999999999999999999987653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.57  E-value=3e-15  Score=107.43  Aligned_cols=49  Identities=27%  Similarity=0.657  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +++++||+|||++|+++|.+||. +|..||++|||||+.||++||+.+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998 89999999999999999999998874

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-15  Score=117.34  Aligned_cols=60  Identities=22%  Similarity=0.353  Sum_probs=55.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhcCCCccccchhhhcccCCCCCCCC
Q 020106           17 TSTCPRGHWRPAEDEKLRQLVEQYGA-----QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRP   76 (331)
Q Consensus        17 ~p~~kKG~WT~EED~~L~~lV~kyG~-----~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~   76 (331)
                      .|.+.+++||+|||++|+++|++||.     .+|..||++|++||..||++||.++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57889999999999999999999996     6799999999999999999999999998777653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.56  E-value=3.4e-15  Score=107.86  Aligned_cols=50  Identities=24%  Similarity=0.476  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkrk  122 (331)
                      ++++||+|||++|+++|.+|| ++|+.||+.||  |||+.||++||..++|.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            478999999999999999999 69999999999  999999999999998753

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.55  E-value=2.5e-15  Score=115.14  Aligned_cols=59  Identities=19%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCC
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR   74 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~k   74 (331)
                      +..|.+++++||+|||++|+++|++||. +|..||++|++||..||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999999997 7999999999999999999999999876665

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.54  E-value=6.7e-15  Score=105.73  Aligned_cols=49  Identities=27%  Similarity=0.683  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 69999999999999999999998753

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=6.6e-15  Score=109.11  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++|||||+.||++||+.++.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3578899999999999999999999 799999999999999999999998764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.53  E-value=1.5e-14  Score=109.73  Aligned_cols=57  Identities=21%  Similarity=0.386  Sum_probs=52.2

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Q 020106           67 QLDPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        67 ~L~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkrk~  123 (331)
                      ..++..++++||+|||++|+++|.+|| ++|+.||+.|+  |||+.|||+||+.+++...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i   62 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL   62 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence            345678899999999999999999999 69999999999  9999999999999998654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-14  Score=111.64  Aligned_cols=56  Identities=16%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHG------NKWALIARLFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G------~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      +|.+++++||+|||++|+++|.+||      .+|.+||++|+|||+.||++||+.++++..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            4788999999999999999999999      7899999999999999999999888876543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-14  Score=108.74  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      .|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|+..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~   58 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPS   58 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence            4678999999999999999999999 79999999999999999999999877643

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=5.2e-14  Score=106.09  Aligned_cols=50  Identities=26%  Similarity=0.545  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkr  121 (331)
                      .++++||+|||++|+++|.+|| ++|++||+.+|  |||+.|||+||+.++|.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~   61 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL   61 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhcc
Confidence            4689999999999999999999 58999999866  99999999999998874

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.21  E-value=3.2e-15  Score=119.35  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106           66 NQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        66 n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      ..+.|.+++++||+|||++|+++|.+||++|+.||++|||||++|||+||+.++++..
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3567889999999999999999999999999999999999999999999999987653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=4.7e-14  Score=104.01  Aligned_cols=49  Identities=27%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC-CCCHHHHHHHHHHH
Q 020106           70 PRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFP-GRTDNAVKNHWHVI  118 (331)
Q Consensus        70 p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp-gRT~nq~KnRW~~i  118 (331)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||..+
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999 89999999999 99999999999875

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.46  E-value=9e-14  Score=110.06  Aligned_cols=69  Identities=28%  Similarity=0.464  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHH----hcCCCccccchhhhccc-----CCCCCC-CCCCHHHHHHHHHHHHH
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEK----LQGRSGKSCRLRWFNQL-----DPRINR-RPFTEDEEERLLAAHRI   91 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~----lpgRt~kQCr~Rw~n~L-----~p~i~k-g~WT~EED~~Llelv~~   91 (331)
                      ++||+|||+.|+++|++||.++|..|++.    |++||..+|++||+++|     .|.+++ .+..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999899999996    79999999999999988     676655 46777887889998864

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.46  E-value=8e-14  Score=109.24  Aligned_cols=54  Identities=22%  Similarity=0.498  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ   67 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~   67 (331)
                      .+.......+++||+|||++|+++|++|| .+|.+||++|++||..||++||.++
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A            9 LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            34456677789999999999999999999 7899999999999999999999998

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.45  E-value=7e-14  Score=108.25  Aligned_cols=58  Identities=29%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCC
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN   73 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~   73 (331)
                      .+...|.+++|+||+|||++|+++|++||.+ |..||+.| |||..||++||+. |....+
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            4567899999999999999999999999975 99999999 9999999999975 444433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=4.9e-14  Score=116.16  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=69.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhccc-----CCCCCCCCCCHHHHHH-H
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQL-----DPRINRRPFTEDEEER-L   85 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L-----~p~i~kg~WT~EED~~-L   85 (331)
                      ..+..++++||+|||+.|+++|++||.++|..|++.+    ++||..+|++||++++     +|.++++.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            3457889999999999999999999998999999965    8999999999999999     6899999888887765 8


Q ss_pred             HHHHHHhCC
Q 020106           86 LAAHRIHGN   94 (331)
Q Consensus        86 lelv~~~G~   94 (331)
                      ++|+..+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877664

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.40  E-value=9.4e-14  Score=117.20  Aligned_cols=84  Identities=23%  Similarity=0.432  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN   94 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~   94 (331)
                      ...|.+++|+||+|||++|+++|.+||. +|..||+.|+||+..||+.||+++|++.+..++|+.+-    +........
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~  121 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR  121 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence            3578899999999999999999999996 69999999999999999999999999999999988763    111122345


Q ss_pred             hhHHHhhcC
Q 020106           95 KWALIARLF  103 (331)
Q Consensus        95 kWs~IAk~L  103 (331)
                      +|+.|++.|
T Consensus       122 ~~~~i~k~~  130 (131)
T 3zqc_A          122 KAADVPKKL  130 (131)
T ss_dssp             ---------
T ss_pred             hhhhcchhc
Confidence            688888766

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.39  E-value=4.2e-13  Score=103.86  Aligned_cols=51  Identities=20%  Similarity=0.422  Sum_probs=47.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           70 PRINRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        70 p~i~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +...+++||.|||.+|++++.+||    .+|.+||++|||||.++|++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            457789999999999999999999    789999999999999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=1.5e-13  Score=106.32  Aligned_cols=57  Identities=18%  Similarity=0.409  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      .+...+...+++||+|||++|+.++++||   ..+|.+||++|||||..||+.||.+++.
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A            9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34455678899999999999999999999   3469999999999999999999998765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-13  Score=110.21  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCC
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP   70 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p   70 (331)
                      .....|.+.+|+||+|||++|+++|.+||. +|..||.+|+|||..||+.||.++|..
T Consensus         7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            455678899999999999999999999997 699999999999999999999998873

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=9.2e-13  Score=103.20  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           71 RINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        71 ~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      ...+++||+|||++|+++|.+||.+|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456899999999999999999999999999999999999999999743

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.29  E-value=1.6e-12  Score=105.20  Aligned_cols=56  Identities=21%  Similarity=0.494  Sum_probs=50.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      ...|.+++|+||+|||++|+.+|.+||. +|..||+.||||+..||+.||+.+|+..
T Consensus        49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           49 HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             TTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             ccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            3568899999999999999999999996 6999999999999999999999988753

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.29  E-value=3.3e-12  Score=95.98  Aligned_cols=50  Identities=24%  Similarity=0.484  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCChhHHHh---hcCCCCCHHHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHGNKWALIA---RLFPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G~kWs~IA---k~LpgRT~nq~KnRW~~ilkr  121 (331)
                      .++.+||+|||+.|+++|++||.+|..|+   .+|++||..+||+||+.++|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            46889999999999999999999999999   588999999999999998875

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.28  E-value=5.2e-12  Score=99.94  Aligned_cols=49  Identities=27%  Similarity=0.459  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      .+||+|||++|+++|.+||. +|+.|++.    |+|||+.+||+||++++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999997 99999995    899999999999999988654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.26  E-value=2.1e-12  Score=105.39  Aligned_cols=55  Identities=33%  Similarity=0.589  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      +.|.+++|+||+|||++|+.+|.+||. +|..||+.||||+..||+.||..+++..
T Consensus        47 L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           47 INPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             SSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence            567889999999999999999999997 6999999999999999999999887653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.25  E-value=7.7e-12  Score=104.91  Aligned_cols=52  Identities=31%  Similarity=0.611  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      .+..++++||+|||++|+++|.+||.+|..||+.||||+..||+.||..++.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence            4568899999999999999999999999999999999999999999998764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.24  E-value=1.4e-11  Score=99.39  Aligned_cols=54  Identities=26%  Similarity=0.527  Sum_probs=48.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106           73 NRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      .+++||.|||.+|++++.+||    ++|.+||++|||||.++|++||+.+++......
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie   64 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE   64 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            467999999999999999996    789999999999999999999999987764433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-11  Score=101.95  Aligned_cols=54  Identities=28%  Similarity=0.436  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcC----CCCCHHHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHGN-KWALIARLF----PGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~L----pgRT~nq~KnRW~~ilkrk  122 (331)
                      .+..++++||+|||++|+++|.+||. +|+.|++.+    +|||+.+||+||+.++++.
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34678899999999999999999997 999999965    8999999999999998854

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.23  E-value=9.6e-12  Score=104.83  Aligned_cols=56  Identities=29%  Similarity=0.461  Sum_probs=50.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHH
Q 020106           67 QLDPRINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        67 ~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk  122 (331)
                      -+.+..++++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+.+++..
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            3566788999999999999999999997 99999997    49999999999999999864

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.21  E-value=5.4e-12  Score=117.01  Aligned_cols=54  Identities=24%  Similarity=0.545  Sum_probs=47.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCh------hHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106           70 PRINRRPFTEDEEERLLAAHRIHGNK------WALIARLFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        70 p~i~kg~WT~EED~~Llelv~~~G~k------Ws~IAk~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      +.+++++||+|||++|+++|.++|++      |++||++|||||+++||+||+.+|+++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l   63 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL   63 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence            35788999999999999999999875      9999999999999999999999998753

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.15  E-value=5e-11  Score=100.61  Aligned_cols=55  Identities=29%  Similarity=0.433  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      ....++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+.+++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34567899999999999999999996 99999986    489999999999999988653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.07  E-value=4.2e-11  Score=96.59  Aligned_cols=48  Identities=15%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhccc
Q 020106           21 PRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      .+++||+|||++|+.++.+||   ..+|.+||+.|||||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            467999999999999999997   456999999999999999999998865

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=88.12  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             ccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Q 020106           57 GKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLF-----PGRTDNAVKNHWHVIMARKQREQ  126 (331)
Q Consensus        57 ~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~L-----pgRT~nq~KnRW~~ilkrk~~~~  126 (331)
                      ..=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..+||+||..+.++.....
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35678999999986    89999999999999999999999999998     58999999999999988776554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6.5e-10  Score=82.60  Aligned_cols=46  Identities=15%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      ...+||+||++++++++.+||.+|..||.+||+||..+|.++|...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999999754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.91  E-value=6.4e-10  Score=83.51  Aligned_cols=50  Identities=22%  Similarity=0.310  Sum_probs=45.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH---HhcCCCccccchhhhcccC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAE---KLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~---~lpgRt~kQCr~Rw~n~L~   69 (331)
                      +.++.+||+|||+.|+++|++||. +|..|+.   ++++||...+++||+++..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            457899999999999999999997 8999995   5689999999999998765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=79.90  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      +...++||+||++++.+++.+|| ++|..||.+||+|+..||.++|....
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            44568999999999999999999 58999999999999999999996543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.87  E-value=2.1e-09  Score=98.99  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             CHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106           44 NWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        44 nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr  121 (331)
                      +|+.+-..|..++... .++++..-.......+||+||++++++++.+||++|..||+.+++||.+|||++|....||
T Consensus       104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3555555554444322 2244432222334679999999999999999999999999999999999999999876554

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=5.7e-09  Score=80.38  Aligned_cols=50  Identities=18%  Similarity=0.262  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106           71 RINRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        71 ~i~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilkr  121 (331)
                      ....+.||.||+.+|.+++.+|+    .+|.+||.+| |||..+|++||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34578999999999999999997    6899999998 99999999999988654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.73  E-value=6.5e-09  Score=80.04  Aligned_cols=50  Identities=20%  Similarity=0.359  Sum_probs=44.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      ....+.||.|||++|.+++.+|+   +..|.+||+.| ||+..+|+.||..++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            44577899999999999999998   34699999998 9999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.59  E-value=2.2e-08  Score=101.08  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      .+||+||.+++++++.+||.+|..||+.++.||..|||++|...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999743

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.51  E-value=3.9e-08  Score=72.90  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHH-HhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQY--------GAQNWNSIAE-KLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~ky--------G~~nW~~IA~-~lpgRt~kQCr~Rw~n~L~   69 (331)
                      |.+||+|||+.|+++|.+|        |..-|+.+|+ .+|++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 7999999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.49  E-value=1e-07  Score=73.74  Aligned_cols=48  Identities=19%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGA---QNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~---~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      ...||.+|+.+|..++..|+.   .+|.+||..|+||+..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            467999999999999999975   469999999999999999999987764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=9.7e-08  Score=73.84  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                      ...||.||+.+|.+++..|+    .+|.+||..+||||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46899999999999999998    46999999999999999999998763

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.39  E-value=3e-07  Score=84.80  Aligned_cols=50  Identities=16%  Similarity=0.296  Sum_probs=45.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      .....+||.||+.++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34567999999999999999999 579999999999999999999988764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.36  E-value=4.3e-07  Score=67.27  Aligned_cols=46  Identities=17%  Similarity=0.408  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCh-hHHHhh-cCCCCCHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIH--------GNK-WALIAR-LFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~--------G~k-Ws~IAk-~LpgRT~nq~KnRW~~il  119 (331)
                      +.+||+|||..|++.|.+|        |++ |.+||+ .+|++|-.++|+||...|
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999        554 999999 899999999999998654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.33  E-value=1.5e-06  Score=83.28  Aligned_cols=104  Identities=15%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc----------------------------------
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL----------------------------------   68 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L----------------------------------   68 (331)
                      +.||..|...++.++.+||..+|..||..|+|++...++. |...+                                  
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~-Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE-YNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH-HHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH-HHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999988866632 21211                                  


Q ss_pred             -----------------CCCCCCCCCCHHHHHHHHHHHHHhCC----hhHHHhh------------cCCCCCHHHHHHHH
Q 020106           69 -----------------DPRINRRPFTEDEEERLLAAHRIHGN----KWALIAR------------LFPGRTDNAVKNHW  115 (331)
Q Consensus        69 -----------------~p~i~kg~WT~EED~~Llelv~~~G~----kWs~IAk------------~LpgRT~nq~KnRW  115 (331)
                                       .+..+...||+|||..|+-++.+||-    .|..|..            ++..||+.+|..|-
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                             12234568999999999999999995    6999962            45679999999999


Q ss_pred             HHHHHHHHHhhh
Q 020106          116 HVIMARKQREQS  127 (331)
Q Consensus       116 ~~ilkrk~~~~~  127 (331)
                      +.+++-..++..
T Consensus       270 ~tLi~~iekE~~  281 (304)
T 1ofc_X          270 NTLITLIERENI  281 (304)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999987666644

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.23  E-value=1.3e-06  Score=70.02  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---hhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106           76 PFTEDEEERLLAAHRIHGN---KWALIARLFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~G~---kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      -||.|||+.||..+++.|.   .|+.||+.|.+|+.+||++||..+|+--...
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~   87 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999986   7999999999999999999999999865543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=4.8e-06  Score=62.14  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh-cCCCCCHHHHHHHHHH
Q 020106           70 PRINRRPFTEDEEERLLAAHRIHGNKWALIAR-LFPGRTDNAVKNHWHV  117 (331)
Q Consensus        70 p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk-~LpgRT~nq~KnRW~~  117 (331)
                      |.+...+||+||-++..+++.+||.+|..|++ .||+||..+|...|-.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            66778999999999999999999999999999 5999999999988853

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.37  E-value=4e-07  Score=69.39  Aligned_cols=46  Identities=17%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           76 PFTEDEEERLLAAHRIHGN---KWALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~G~---kWs~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      -||.|||+.|+..+++.|.   .|+.||+.| +|+++||++||..+++--
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            6999999999999999997   799999999 999999999999988643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.02  E-value=1.1e-05  Score=64.94  Aligned_cols=62  Identities=16%  Similarity=0.252  Sum_probs=52.5

Q ss_pred             hhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCC-----CCCHHHHHHHHHHHHHHHHHhhh
Q 020106           62 LRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFP-----GRTDNAVKNHWHVIMARKQREQS  127 (331)
Q Consensus        62 ~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~Lp-----gRT~nq~KnRW~~ilkrk~~~~~  127 (331)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++..+...
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            45556665    3689999999999999999999999998764     79999999999999888776543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=6.9e-06  Score=61.26  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCCccccchhhhc
Q 020106           15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAE-KLQGRSGKSCRLRWFN   66 (331)
Q Consensus        15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lpgRt~kQCr~Rw~n   66 (331)
                      +..|.+....||+||-++..+++.+||. +|..||+ .|++|+..+|.+-|..
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence            3457788889999999999999999995 7999999 5899999999987743

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.96  E-value=1.6e-06  Score=67.12  Aligned_cols=43  Identities=28%  Similarity=0.514  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----hhHHHhhcCCCCCHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGN----KWALIARLFPGRTDNAVKNHWH  116 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~----kWs~IAk~LpgRT~nq~KnRW~  116 (331)
                      ..+||.||+++|.+++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    6999999999999999999884

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.89  E-value=9.2e-07  Score=68.40  Aligned_cols=53  Identities=15%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             CCCCCCCCC-CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhcCCCccccchhhh
Q 020106           13 TKSSTSTCP-RGHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRWF   65 (331)
Q Consensus        13 ~ks~~p~~k-KG~WT~EED~~L~~lV~kyG~~---nW~~IA~~lpgRt~kQCr~Rw~   65 (331)
                      ++.+..+.. ...||.+|+++|..++.+|+..   .|.+||+.||||+..+|+.+|.
T Consensus        10 ~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           10 GSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ------------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            333433333 4579999999999999999753   6999999999999999999994

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.70  E-value=9.5e-06  Score=65.38  Aligned_cols=47  Identities=19%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh-----cCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL-----QGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l-----pgRt~kQCr~Rw~n~L~   69 (331)
                      ...||.||++.|.+|+++|+. .|..|+..+     ++|+..++++||..+.+
T Consensus        30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999997 599999999     47999999999987654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.59  E-value=0.00011  Score=55.88  Aligned_cols=44  Identities=11%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhh-cCCCCCHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIAR-LFPGRTDNAVKNHWHV  117 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk-~LpgRT~nq~KnRW~~  117 (331)
                      ..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|-.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5999999999998863

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.59  E-value=8.6e-05  Score=59.58  Aligned_cols=44  Identities=18%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHV  117 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~  117 (331)
                      ...||+||.++..++...||.+|..||..||+||..+|-.+|-.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999988753

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.49  E-value=8.1e-05  Score=75.23  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ   67 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~   67 (331)
                      ....+||.||-.++++++.+||. +|..||++|++|+..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34679999999999999999995 899999999999999999998764

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.43  E-value=0.00076  Score=60.02  Aligned_cols=107  Identities=14%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC--CCCHHHHHHH--hcCCCccccch-------hhhc--------------------
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYG--AQNWNSIAEK--LQGRSGKSCRL-------RWFN--------------------   66 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG--~~nW~~IA~~--lpgRt~kQCr~-------Rw~n--------------------   66 (331)
                      |.-....||..|-..|+.++.+||  ...|..|++.  |.+++...+..       +...                    
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~   82 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK   82 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            344567899999999999999999  5679999875  45555533321       0000                    


Q ss_pred             ------------------------cc---------------C-----CCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhh
Q 020106           67 ------------------------QL---------------D-----PRINRRPFTEDEEERLLAAHRIHG-NKWALIAR  101 (331)
Q Consensus        67 ------------------------~L---------------~-----p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk  101 (331)
                                              .|               -     +......||++||..|+..+.+|| ++|.+|-.
T Consensus        83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence                                    00               0     001123599999999999999999 88999975


Q ss_pred             --cC--C--------C--CCHHHHHHHHHHHHHHHHH
Q 020106          102 --LF--P--------G--RTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus       102 --~L--p--------g--RT~nq~KnRW~~ilkrk~~  124 (331)
                        .|  .        .  ++..++..|-..+|+--.+
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~~  199 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSR  199 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHHHHHHHHHH
Confidence              22  1        2  4566899998888775443

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.39  E-value=9.7e-05  Score=59.26  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhc
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN   66 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n   66 (331)
                      ...||+||.+++.++..+|| ++|..||+.|++|+..+|.+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46799999999999999999 579999999999999999987743

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.33  E-value=0.0006  Score=66.95  Aligned_cols=104  Identities=21%  Similarity=0.400  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhccc---------------------------------
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQL---------------------------------   68 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L---------------------------------   68 (331)
                      +.||.-|=..++.++.+||..+-..||..|. +++...++ +|.+.+                                 
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999997 77776554 222222                                 


Q ss_pred             ---------CC---------C--CCCCCCCHHHHHHHHHHHHHhC----ChhHHHhh------------cCCCCCHHHHH
Q 020106           69 ---------DP---------R--INRRPFTEDEEERLLAAHRIHG----NKWALIAR------------LFPGRTDNAVK  112 (331)
Q Consensus        69 ---------~p---------~--i~kg~WT~EED~~Llelv~~~G----~kWs~IAk------------~LpgRT~nq~K  112 (331)
                               +|         .  .+...||+|||..||-++.+||    +.|..|-.            ++..||+.+|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                     11         1  1355799999999999999999    45999843            25679999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 020106          113 NHWHVIMARKQREQS  127 (331)
Q Consensus       113 nRW~~ilkrk~~~~~  127 (331)
                      .|-+.|++-..++..
T Consensus       283 rRc~tLi~~IeKE~~  297 (374)
T 2y9y_A          283 RRGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999987766644

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.27  E-value=0.00029  Score=53.49  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCCccccchhhhc
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE-KLQGRSGKSCRLRWFN   66 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lpgRt~kQCr~Rw~n   66 (331)
                      ....||+||-.+..+++.+||. +|..|++ .|++|+..+|.+-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4568999999999999999995 7999999 5999999999887753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.26  E-value=0.00024  Score=55.28  Aligned_cols=50  Identities=16%  Similarity=0.387  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------hhHHHhhcCC----CCCHHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGN----------KWALIARLFP----GRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~----------kWs~IAk~Lp----gRT~nq~KnRW~~ilkrk~  123 (331)
                      ...||.+|..+||++...+..          .|..||..|.    .||+.||+++|..|.+.-+
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            468999999999999976432          4999998763    6999999999999887654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.95  E-value=0.00031  Score=54.67  Aligned_cols=49  Identities=24%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC------C---CHHHHHHHhc----CCCccccchhhhcccC
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGA------Q---NWNSIAEKLQ----GRSGKSCRLRWFNQLD   69 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~------~---nW~~IA~~lp----gRt~kQCr~Rw~n~L~   69 (331)
                      +...||.+|-..|+++......      .   -|..||..|.    .|++.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999975321      1   3999999983    6999999999988653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.99  E-value=0.00013  Score=55.65  Aligned_cols=45  Identities=16%  Similarity=0.338  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhcCCCccccchhhhcccC
Q 020106           24 HWRPAEDEKLRQLVEQYGA--QNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      .||.|||..|+..+++-|+  .-|..||+.+ +|+..|+.+||+.++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999987  2499999999 9999999999988665

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.91  E-value=0.00051  Score=55.13  Aligned_cols=45  Identities=16%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhcCCCccccchhhhccc
Q 020106           24 HWRPAEDEKLRQLVEQYGA--QNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      .||.|||..|+...++.|.  +.|..||+.|.+|+..|+.+|++.++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            5999999999999999986  35999999999999999999997744

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.43  E-value=0.012  Score=47.32  Aligned_cols=47  Identities=19%  Similarity=0.402  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-----CCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-----GRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-----gRt~kQCr~Rw~n~L~   69 (331)
                      ...||.||.+.|.+|+++|.. .|-.|+....     .|+..+.++||..+..
T Consensus        30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999997 5999999873     6999999999977643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.03  E-value=0.037  Score=41.54  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHh--cCCCccccchhhhcc
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQN--WNSIAEKL--QGRSGKSCRLRWFNQ   67 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~n--W~~IA~~l--pgRt~kQCr~Rw~n~   67 (331)
                      +..++-.||+|.-++.+++|++.|...  ++.|.+.|  +|.|..++..|...|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            456778999999999999999999532  89999998  578888887665443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.30  E-value=0.071  Score=50.99  Aligned_cols=49  Identities=20%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMARK  122 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilkrk  122 (331)
                      .+.||..|...++.++.+||. .|..||..|+|+|..+|+.++....++.
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            467999999999999999995 6999999999999999998888777654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.09  E-value=0.15  Score=38.21  Aligned_cols=48  Identities=23%  Similarity=0.177  Sum_probs=40.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCh---hHHHhhcC--CCCCHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHGNK---WALIARLF--PGRTDNAVKNHWHVIM  119 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G~k---Ws~IAk~L--pgRT~nq~KnRW~~il  119 (331)
                      ..+-.||+|..+..++++.++|..   |..|.+.|  +|.|..+|+.|...+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999965   67888874  5889999999876543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=93.67  E-value=0.093  Score=46.40  Aligned_cols=54  Identities=17%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC---ChhHHHhh--cCCCCCHHHHHHHHHHHHHHHHH
Q 020106           71 RINRRPFTEDEEERLLAAHRIHG---NKWALIAR--LFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        71 ~i~kg~WT~EED~~Llelv~~~G---~kWs~IAk--~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      .-....||+.|-..|++++.+||   .+|..|++  .|.+||..+|+..+..++.+...
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~   62 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK   62 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999   57999986  48899999999998888876544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.34  E-value=0.2  Score=47.09  Aligned_cols=29  Identities=38%  Similarity=0.692  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEK   51 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~   51 (331)
                      ..|+.+||..|+..|.+||.++|..|..-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            46999999999999999999999999764

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=85.77  E-value=2  Score=40.22  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---ChhHHHhh--cCCCCCHHHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG---NKWALIAR--LFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G---~kWs~IAk--~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      +++||+-|-+.|++++.+||   .+|..|+.  .|+.++...++.-++.++...+.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~   58 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD   58 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999   58999975  58999999999999988865443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-19
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-09
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-10
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-14
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.001
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	6e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	6e-09
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-09
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	7e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-05

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.8 bits (194), Expect = 3e-19
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQ-----NWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRP 76
          +  +   EDE +  +V +   +      ++ I+  +   +G S R R+   L  R+    
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 77 FTEDEEERLLAAH 89
            +   + +    
Sbjct: 61 EVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 74  RRPFTEDEEERLLAAHRIHGNK------WALIARLFPGRTDNAVKNHWH 116
           +  FT++E+E +L   R +  +      +  I+   P  T N++++ + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 49

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (191), Expect = 3e-19
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +G W   ED++L +LV++YG + W+ IA+ L+GR GK CR RW N L+P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 72  INRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
           + + P+T++E++RL+   + +G  +W++IA+   GR     +  WH
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (189), Expect = 8e-19
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70
          +  W   EDEKL++LVEQ G  +W  IA  L  R+   C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 74  RRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWH 116
           +  +T +E+E+L      +G + W +IA   P RTD   ++ W 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAE----KLQGRSGKSCRLRWFNQLDPRI------NR 74
          +  AE E L + VE  G   W  +          R+    + +W   +            
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 75 RPFTEDEEERLLAAHRIHGNK 95
           P  +D  +R+LAAH     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 75  RPFTEDEEERLLAAHRIHGNK-WALIARL----FPGRTDNAVKNHWHVIMARKQREQSK 128
           RPF+  E E L+ A    G   W  +          RT   +K+ W  ++        +
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ 59

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 6e-14
 Identities = 24/46 (52%), Positives = 34/46 (73%)

Query: 74  RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIM 119
           +  +TE+E+  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (133), Expect = 4e-11
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL 68
          +  W   ED  + Q  ++ G   W  IA+ L GR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 8e-14
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEK--LQGRSGKSCRLRWFNQLDPRIN 73
          +  W   E E ++  V++YG  NW +I++      R+    + RW       +N
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 74  RRPFTEDEEERLLAAHRIHGNK-WALIARL--FPGRTDNAVKNHWHVIM 119
           ++ +T +E E + A  + +G   WA I++   F  RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWH 116
            R     ++E E+E        H   + LIA     +T      +++
Sbjct: 13  DRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 59

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 7  GSSDDATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN 66
          G   D  K          W   E E  R+   Q+  +N+  IA  L+ ++   C L ++ 
Sbjct: 2  GLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEK--LQGRSGKSCRLRWFN 66
          R  W   ED+ LR  V +YG  NW+ I        R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 74  RRPFTEDEEERLLAAHRIHGNK-WALIARLFP--GRTDNAVKNHWHVIM 119
           R+ +  +E++ L +  R +G   W+ I   +    RT   +K+ W  + 
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 9e-12
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEER 84
          W   E E   Q + ++G + W  I++ +  R+    +         ++      E   ++
Sbjct: 5  WTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 6e-11
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 76  PFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRE 125
            +T +E+E         G +W  I++L   RT   VK++       K + 
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 74  RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ 126
              +T +E+   + A R +G  +  I+ +   ++   VKN +     R   ++
Sbjct: 5   NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDE 81
             W   E     Q + +YG +++ +I++ +  +S    +  + N    R N     ++ 
Sbjct: 5  NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR-RFNIDEVLQEW 62

Query: 82 EE 83
          E 
Sbjct: 63 EA 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 9e-11
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRW 64
           +   +      W   + + L   ++QY       W+ IA  +  +S + C  R+
Sbjct: 3  LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 70  PRINRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVI 118
            R    P+T+++++ L  A + +     + W  IAR  P ++       + ++
Sbjct: 8   ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 25 WRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN 66
          W   E+  L + V   G  NW  +A ++  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 77  FTEDEEERLLAAHRIHGNK-WALIARLFPGRTDNAVKNHWH 116
           +T  EE  LL A    G   W  +A     +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 75  RPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIM 119
           RP++  E +    A  ++     ++WA +AR   GRT   VK H+ +++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 50

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 25 WRPAEDEKLRQLVEQYGAQN---WNSIAEKLQGRSGKSCRLRWFNQLDPRINR 74
          W   E++   + +  Y       W ++A  ++GR+ +  +  +   L   I  
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 76  PFTEDEEERLLAAHRIHGNK---WALIARLFPGRTDNAVKNHWHVIMARKQ 123
            +T + +  +L   +  G +   +++I++    +T   V + +  +M    
Sbjct: 35  LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 25 WRPAEDEKLRQLVEQYGAQN--WNSIAEKLQGRSGKSCRLRW 64
          W    D  +  + ++ GAQ   ++ I+++L  ++      R+
Sbjct: 36 WTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.62
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.51
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.44
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.38
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.32
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.25
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.16
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.12
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.11
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.01
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.82
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.14
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.12
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.0
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.83
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.06
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.91
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.57
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.16
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.92
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.61
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	93.6
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.12
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	85.6
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	82.83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=4.4e-21  Score=151.08  Aligned_cols=71  Identities=15%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHh
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQN-----WNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIH   92 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~n-----W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~   92 (331)
                      |++||+|||++|+++|.+||...     |.+||+.|||||++|||+||+++|+|.+++++||++||.+|+.++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            68999999999999999999753     999999999999999999999999999999999999999998766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=7.7e-19  Score=125.86  Aligned_cols=52  Identities=46%  Similarity=1.019  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      +.||+||+|||++|+++|++||.++|..||+.|++||..||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4799999999999999999999889999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.4e-18  Score=121.29  Aligned_cols=50  Identities=42%  Similarity=0.868  Sum_probs=48.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR   71 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~   71 (331)
                      |++||+|||++|+++|++||.++|.+||+.|+||+..||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.3e-17  Score=115.91  Aligned_cols=47  Identities=51%  Similarity=0.970  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +.+||+|||++|+++|.+||++|+.||++|||||+++|||||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.62  E-value=1.3e-16  Score=124.10  Aligned_cols=73  Identities=21%  Similarity=0.338  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHH----hcCCCccccchhhhcccC-----CCCCCCCCCHHHHHHHHHHHHHhC
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEK----LQGRSGKSCRLRWFNQLD-----PRINRRPFTEDEEERLLAAHRIHG   93 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~----lpgRt~kQCr~Rw~n~L~-----p~i~kg~WT~EED~~Llelv~~~G   93 (331)
                      .+||+|||+.|+++|++||.++|..||+.    +++||+.||++||+++|+     |..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            48999999999999999999999999986    479999999999999984     677888999877   455555555


Q ss_pred             ChhHH
Q 020106           94 NKWAL   98 (331)
Q Consensus        94 ~kWs~   98 (331)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.8e-16  Score=112.18  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=49.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--hcCCCccccchhhhcccCCCCC
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEK--LQGRSGKSCRLRWFNQLDPRIN   73 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~--lpgRt~kQCr~Rw~n~L~p~i~   73 (331)
                      +|++||+|||++|+++|++||.++|..||+.  |++|++.||++||++++++.+|
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999998  5699999999999999998765

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=9.2e-16  Score=109.60  Aligned_cols=48  Identities=27%  Similarity=0.711  Sum_probs=45.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                      +.+++||+|||++|+++|.+|| ++|..||+.|||||+.||++||+.+|
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence            4689999999999999999999 68999999999999999999999765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.8e-15  Score=106.31  Aligned_cols=49  Identities=31%  Similarity=0.530  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh--cCCCccccchhhhcccC
Q 020106           21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL--QGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l--pgRt~kQCr~Rw~n~L~   69 (331)
                      ++++||+|||+.|+++|++||.++|..||+.+  .+|++.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            58999999999999999999998999999985  48999999999998753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.1e-14  Score=102.91  Aligned_cols=47  Identities=28%  Similarity=0.675  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      +++||+|||++|+++|.+|| ++|..||++|||||+.||++||+.+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999 579999999999999999999998763

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4e-15  Score=104.24  Aligned_cols=47  Identities=26%  Similarity=0.591  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      |.+||+|||++|+++|++||. +|..||.+|||||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            679999999999999999997 69999999999999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.3e-15  Score=103.14  Aligned_cols=45  Identities=20%  Similarity=0.544  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      .||+|||++|+++|++||.++|..||++|++||+.||+.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999999999999999999999999998863

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.3e-14  Score=100.21  Aligned_cols=48  Identities=23%  Similarity=0.491  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcC--CCCCHHHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHGN-KWALIARLF--PGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~-kWs~IAk~L--pgRT~nq~KnRW~~ilk  120 (331)
                      ++++||+|||++|+++|.+||. +|+.||+.+  .|||+.||++||+.|.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999875  48999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=99.38  Aligned_cols=49  Identities=27%  Similarity=0.509  Sum_probs=44.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-ChhHHHhhc--CCCCCHHHHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHG-NKWALIARL--FPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G-~kWs~IAk~--LpgRT~nq~KnRW~~ilkr  121 (331)
                      ++.+||+|||++|+++|.+|| ++|..||+.  |++||+.||++||+.+++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~   52 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL   52 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcC
Confidence            468999999999999999999 589999997  5699999999999998875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=101.88  Aligned_cols=52  Identities=23%  Similarity=0.273  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRE  125 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~  125 (331)
                      ...||+|||.+|++++.+||.+|..||++||+||+.||++||..++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999988876543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-13  Score=101.01  Aligned_cols=53  Identities=19%  Similarity=0.421  Sum_probs=47.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhcCCCccccchhhhc
Q 020106           14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRWFN   66 (331)
Q Consensus        14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~---nW~~IA~~lpgRt~kQCr~Rw~n   66 (331)
                      +...+...+++||+|||++|+++|.+||..   +|.+||+.||||+..||++||+.
T Consensus         4 ~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           4 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            455667788999999999999999999975   49999999999999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.9e-14  Score=102.72  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHH
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTED   80 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~E   80 (331)
                      ..+||+|||++|+++|.+|| .+|..||++|++||..||+.||.+++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            36799999999999999999 58999999999999999999999999887777766543

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.6e-13  Score=107.30  Aligned_cols=50  Identities=22%  Similarity=0.529  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCh------hHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNK------WALIARLFPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~k------Ws~IAk~LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      +++||+|||++|+++|.+||.+      |++||++|||||+.|||+||+..|....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l   56 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL   56 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccc
Confidence            5799999999999999999975      9999999999999999999999988765

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.3e-13  Score=96.46  Aligned_cols=50  Identities=20%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----hhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           69 DPRINRRPFTEDEEERLLAAHRIHGN----KWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        69 ~p~i~kg~WT~EED~~Llelv~~~G~----kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      .+...+.+||+|||.+|+++|.+||.    +|.+||++|||||..||++||..|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677899999999999999999995    699999999999999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.4e-13  Score=92.73  Aligned_cols=43  Identities=26%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           76 PFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      .||+|||++|+++|.+|| ++|..||++|++||+.||++||..+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999865

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.32  E-value=1.4e-12  Score=95.89  Aligned_cols=50  Identities=28%  Similarity=0.567  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----hhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGN----KWALIARLFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~----kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      .+||+|||++|++++.+||.    +|.+||.+|||||.+||++||+.+++..+.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~   55 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY   55 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhc
Confidence            47999999999999999995    599999999999999999999888765543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.9e-12  Score=102.79  Aligned_cols=74  Identities=12%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             HhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCh---hHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106           51 KLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNK---WALIARLFPGRTDNAVKNHWHVIMARKQR  124 (331)
Q Consensus        51 ~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~k---Ws~IAk~LpgRT~nq~KnRW~~ilkrk~~  124 (331)
                      .+|..+..++..++.+...+......||.|||++||+.++++|.+   |..||+.|+||++++||+||..+++....
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            356677788888888888888888899999999999999999977   99999999999999999999999987653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.25  E-value=1.4e-12  Score=95.85  Aligned_cols=44  Identities=16%  Similarity=0.496  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHHHHHhcCCCccccchhhhc
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQN---WNSIAEKLQGRSGKSCRLRWFN   66 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~n---W~~IA~~lpgRt~kQCr~Rw~n   66 (331)
                      .+||+|||++|+++|.+||.+.   |.+||.+|||||..||++||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999764   9999999999999999999954

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.16  E-value=2.1e-11  Score=94.19  Aligned_cols=49  Identities=27%  Similarity=0.459  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQ  123 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk~  123 (331)
                      .+||.|||++|+++|.+||. +|+.|++.    +++||+.|||+||+.+++...
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~   54 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc
Confidence            38999999999999999995 89999985    789999999999999997654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.8e-11  Score=90.15  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk  120 (331)
                      ...||+||+.+|++++..||.+|..||++|||||..+|++||..+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-11  Score=91.20  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106           72 INRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI  118 (331)
Q Consensus        72 i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i  118 (331)
                      ....+||+||+++|++++.+||.+|..||++|||||..||++||...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999999999753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-10  Score=85.89  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~   69 (331)
                      ..+||++||++|.+++.+||. +|..||.+|++|+..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            357999999999999999995 79999999999999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.3e-11  Score=88.35  Aligned_cols=55  Identities=22%  Similarity=0.289  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106           13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      .+.........+||+|||++|+++|.+||. +|..||++||+|+..||+.+|....
T Consensus         8 ~~~~~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1           8 MKVYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             CTTTTSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             HHHHccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            333344556678999999999999999995 7999999999999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.4e-09  Score=84.64  Aligned_cols=51  Identities=16%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHhcCCCccccchhhhccc
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQN--WNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~n--W~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      +......||.|||++|++.++++|...  |..||+.|++|++.||++||..++
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            444567899999999999999999754  999999999999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.7e-06  Score=61.71  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCChhHHHhhc-CCCCCHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHGNKWALIARL-FPGRTDNAVKNHWHV  117 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G~kWs~IAk~-LpgRT~nq~KnRW~~  117 (331)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.++|-.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999985 799999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=62.78  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106           75 RPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        75 g~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~il  119 (331)
                      ..||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999996    5699999999 999999999997653

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-06  Score=61.90  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhcCCCccccchhhhccc
Q 020106           23 GHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRWFNQL   68 (331)
Q Consensus        23 G~WT~EED~~L~~lV~kyG~~---nW~~IA~~lpgRt~kQCr~Rw~n~L   68 (331)
                      +.||.||+.+|.+++.+|..+   .|.+||+.| ||+..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            579999999999999999644   499999999 899999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=5.5e-06  Score=59.01  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHH-hcCCCccccchhhhcc
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEK-LQGRSGKSCRLRWFNQ   67 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~-lpgRt~kQCr~Rw~n~   67 (331)
                      .||+||-.++.+++.+||. +|..|++. +|+|+..||.+.|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6999999999999999995 89999985 6999999999988643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00016  Score=51.89  Aligned_cols=47  Identities=15%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Ch-hHHHhh-cCCCCCHHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHG--------NK-WALIAR-LFPGRTDNAVKNHWHVIMA  120 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G--------~k-Ws~IAk-~LpgRT~nq~KnRW~~ilk  120 (331)
                      +.+||.|||+.|++.|+++.        +. |.++++ .+|.+|-.+.|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999995 6899999999999986653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.06  E-value=0.00032  Score=50.97  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHHHh--cCCCccccchhhhcc
Q 020106           18 STCPRGHWRPAEDEKLRQLVEQYGAQNW--NSIAEKL--QGRSGKSCRLRWFNQ   67 (331)
Q Consensus        18 p~~kKG~WT~EED~~L~~lV~kyG~~nW--~~IA~~l--pgRt~kQCr~Rw~n~   67 (331)
                      +..++-.||+||-++++.+|+.+|...|  +.|.+.|  +++|..||+-|...|
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3455778999999999999999997544  6888876  788999998766554

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0003  Score=50.36  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------CHHHHHH-HhcCCCccccchhhhcccC
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQ--------NWNSIAE-KLQGRSGKSCRLRWFNQLD   69 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~--------nW~~IA~-~lpgRt~kQCr~Rw~n~L~   69 (331)
                      |-+||.|||+.|++.|..+...        =|+.+++ .++.+|-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            5689999999999999998432        2999996 5799999999999998875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0012  Score=44.66  Aligned_cols=46  Identities=26%  Similarity=0.535  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCChhHHHh---hcCCCCCHHHHHHHHHHHH
Q 020106           74 RRPFTEDEEERLLAAHRIHGNKWALIA---RLFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        74 kg~WT~EED~~Llelv~~~G~kWs~IA---k~LpgRT~nq~KnRW~~il  119 (331)
                      +..||+||..-|...|+.||+.|..|-   .+-|||+..++..+|..++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999996   3568999999999998764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.0024  Score=46.23  Aligned_cols=47  Identities=26%  Similarity=0.229  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCChhH---HHhhc--CCCCCHHHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHGNKWA---LIARL--FPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~kWs---~IAk~--LpgRT~nq~KnRW~~il  119 (331)
                      .+-.||+||.++.++++..+|..|+   .|.+.  ++|+|..+|+.|...+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999998884   66654  68899999999876553

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.01  Score=40.02  Aligned_cols=45  Identities=24%  Similarity=0.371  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh---cCCCccccchhhhcc
Q 020106           22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL---QGRSGKSCRLRWFNQ   67 (331)
Q Consensus        22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l---pgRt~kQCr~Rw~n~   67 (331)
                      |..||.||-.-|...|+++|. .|+.|--.+   +||+......+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            457999999999999999996 699999887   689988888877653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.028  Score=41.13  Aligned_cols=51  Identities=18%  Similarity=0.365  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhcCCCccccchhhhcccCC
Q 020106           20 CPRGHWRPAEDEKLRQLVEQYGA---QNWNSIAEKLQGRSGKSCRLRWFNQLDP   70 (331)
Q Consensus        20 ~kKG~WT~EED~~L~~lV~kyG~---~nW~~IA~~lpgRt~kQCr~Rw~n~L~p   70 (331)
                      ...+.|+++|-++|-.++.....   +-|..||..+..|+.-.|..+|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34578999999999999987643   3499999999999999999999887654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.046  Score=39.91  Aligned_cols=45  Identities=16%  Similarity=0.304  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCh----hHHHhhcCCCCCHHHHHHHHHH
Q 020106           73 NRRPFTEDEEERLLAAHRIHGNK----WALIARLFPGRTDNAVKNHWHV  117 (331)
Q Consensus        73 ~kg~WT~EED~~Llelv~~~G~k----Ws~IAk~LpgRT~nq~KnRW~~  117 (331)
                      ..+.|+++|-.+|-.++..+...    |+.+|..++.||+.+|..+|..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            45689999999999999988743    9999999999999999988864

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.60  E-value=0.1  Score=35.87  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106           76 PFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMAR  121 (331)
Q Consensus        76 ~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkr  121 (331)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+.+.+..-+|
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~r   47 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER   47 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            499999999999999999 4799999999999999999877666554

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.12  E-value=0.093  Score=42.34  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             cccchhhhccc--CCCCCCCCCCHHHHHHHHHHHHHhC-Ch---hHHHhh------------cCCCCCHHHHHHHHHHHH
Q 020106           58 KSCRLRWFNQL--DPRINRRPFTEDEEERLLAAHRIHG-NK---WALIAR------------LFPGRTDNAVKNHWHVIM  119 (331)
Q Consensus        58 kQCr~Rw~n~L--~p~i~kg~WT~EED~~Llelv~~~G-~k---Ws~IAk------------~LpgRT~nq~KnRW~~il  119 (331)
                      .+|+.-|..+-  .+..++..+|+|||.-|+-++.+|| .+   |..|-.            +|..||+..|..|-+.++
T Consensus        31 ~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          31 SRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             HTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            45555555432  1345566799999999999999999 33   988743            346799999999999999


Q ss_pred             HHHHHhhh
Q 020106          120 ARKQREQS  127 (331)
Q Consensus       120 krk~~~~~  127 (331)
                      +-..++..
T Consensus       111 ~~i~kE~~  118 (128)
T d1ofcx2         111 TLIERENI  118 (128)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            98777644

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.60  E-value=0.24  Score=33.99  Aligned_cols=38  Identities=18%  Similarity=0.469  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccc
Q 020106           24 HWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCR   61 (331)
Q Consensus        24 ~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr   61 (331)
                      .|+..|=+.++.+.++||..+-..||..|.+++...++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHH
Confidence            49999999999999999998999999999888877654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.83  E-value=0.64  Score=37.21  Aligned_cols=48  Identities=13%  Similarity=0.229  Sum_probs=36.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHh------------cCCCccccchhhhc
Q 020106           19 TCPRGHWRPAEDEKLRQLVEQYGAQN---WNSIAEKL------------QGRSGKSCRLRWFN   66 (331)
Q Consensus        19 ~~kKG~WT~EED~~L~~lV~kyG~~n---W~~IA~~l------------pgRt~kQCr~Rw~n   66 (331)
                      ..++..+|.|||.-|+-++.+||.++   |.+|-..+            ..||+..+..|-..
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT  108 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHH
Confidence            44555699999999999999999998   88887654            34666666555533