Citrus Sinensis ID: 020121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Secondary Structure (PSIPRED)
ccccccccccHHHHccccccccccccccccccccEEEEcccccccccHHHHHHHccccEEEEEEEEEEEEEcEEEEEcccccEEEEcccEEEEcccEEEEEEccEEEcccEEEcccccccccEEEcccccEEEEEcccccccccccEEEEEccccEEEEcEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEcccEEEEEcccccEEEEEcEEEEccccccEEEEEEccccccccccccEEEEEccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEccccEEEEEEccEEEEEEEcEEEcccccccccccEEEEEEEcccccccEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEcccccccEEEEEEcccccHHcccccEcccccEEEcccEEEccccccccccccHHHcccccccccccHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvslpyahvDSCLRALAGQAEgfgrfaigglhgpvyfvtnlsddgpgslregcrrrepLWIVFEVSGTIhlssylsvssyktidgrgqrikltgkglrlkeCEHVIICNlefeggrghdvdgiqikpnsrhiwidrcslrdyddgliditrqstditvsrcyftqhdktmligadpshvgdrcirvtihhclfdgtrqrhprlrfgkvhlynnytrnwGIYAVCASVESQIYSQCNIyeagqkkrtFEYYTEKAADKLEaksglirsegdIFLKGAQAQLLtgvgeecvfhpseyyptwtmeapsdsLKQILQICTgwqsiprpadvmian
Flexible Loop (DISEMBL)
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVsgtihlssylsvssyktidgrgqRIKLtgkglrlkeCEHVIICNLefeggrghdvdgiqikpnsrhiwiDRCSLRDYDDGLIDItrqstditvsrCYFTQHDKTMLIGADPSHVGDRCIRVTIHHclfdgtrqrhprlrfGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTgwqsiprpadvmian
Low Complexity Region (SEG)
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Disordered region (IsUnstruct)
****PYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIP*********
Disordered Region (DISOPRED)
****PYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRP**VM***
Disordered Region (DISEMBL)
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Disordered Region (DISPRO)
*VSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9C8G4	368	Probable pectate lyase 4	no	no	0.803	0.722	0.399	3e-48
Q9FM66	392	Putative pectate lyase 21	no	no	0.815	0.688	0.401	1e-44
Q93Z04	501	Probable pectate lyase 13	no	no	0.785	0.518	0.402	7e-42
O65388	384	Putative pectate lyase 2	no	no	0.788	0.679	0.379	1e-41
P15721	398	Probable pectate lyase P5	N/A	no	0.785	0.653	0.407	4e-39
O64510	455	Probable pectate lyase 6	no	no	0.803	0.584	0.366	6e-39
Q93Z25	432	Probable pectate lyase 22	no	no	0.791	0.606	0.364	9e-39
O65457	394	Putative pectate lyase 17	no	no	0.788	0.662	0.366	1e-38
Q9LTZ0	412	Putative pectate lyase 11	no	no	0.873	0.701	0.339	1e-38
P40972	397	Pectate lyase OS=Nicotian	N/A	no	0.788	0.657	0.398	2e-38

>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 165/288 (57%), Gaps = 22/288 (7%)

Query: 9   VDSCLR----------ALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +D+C R          ALA  A G+G+ AIGG +GP+Y VTN SD+     PG+LR    
Sbjct: 38  IDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVS 97

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKL-TGKGLRLKECEHVIICNLEFE 113
           + +PLWI F     I L S L ++SYKTIDGRG ++++  G  LR+++ +HVII  +   
Sbjct: 98  QPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIH 157

Query: 114 GGR----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
             +    G D DGI++   S H+WID C L    DGLID+   ST +T+S  YFTQHDK 
Sbjct: 158 DCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKV 216

Query: 170 MLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE 228
           ML+G D S++GD+ +RVTI    F  G  +R PR+R G  H+ NN    W +YA+  S  
Sbjct: 217 MLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSAN 276

Query: 229 SQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
             I+S+ N Y    +KR+ +  T++     ++K     +  D+F+ GA
Sbjct: 277 PIIFSEGN-YFVAPEKRSSKQVTKRMMAGPDSKRWKWGTSRDVFMNGA 323

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2

>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/294 (40%), Positives = 154/294 (52%), Gaps = 24/294 (8%)

Query: 14  RALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGP-----GSLREGCRRREPLWIVFEVSGT 68
           + LA  A GFGR +IGG  G  Y VT+  DD P     G+LR    + +PLWI+F+    
Sbjct: 66  KNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMV 125

Query: 69  IHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEHVIICNLEFEG------------G 115
           I L   L V+SYKTIDGRG  +++  G  L L +  ++II NL                G
Sbjct: 126 IQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLG 185

Query: 116 RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175
              D DGI I   SR IWID C+L    DGLID    STDIT+S  Y   H++ ML+G  
Sbjct: 186 GYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHS 244

Query: 176 PSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQ 234
             + GDR +RVTI    F +G  QR PR R G  H+ NN  R+W +YA+  S    I+SQ
Sbjct: 245 DEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQ 304

Query: 235 CNIYEAGQKKRTFEYYTEKAAD-KLEAKSGLIRSEGDIFLKGAQAQLLTGVGEE 287
            N++ A   + T E    ++AD   E K    +SEGD  + GA     T  G+E
Sbjct: 305 GNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGA---FFTPSGKE 355

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 147/278 (52%), Gaps = 18/278 (6%)

Query: 16  LAGQAEGFGRFAIGGLHGPVYFVTNLSDDGP-----GSLREGCRRREPLWIVFEVSGTIH 70
           LA  + GFG   +GG +G +Y VT+ SD+ P     G+LR G  + EPLWIVF  +  I 
Sbjct: 99  LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query: 71  LSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEHVIICNLE---------FEGGRGHDV 120
           L   L ++SYKT+DGRG  + +TG G L L+  +H+II NL          FE     D 
Sbjct: 159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGI I   S+ IW+D CS+    DGLID    ST IT+S  YFT HD+ ML+G D ++  
Sbjct: 219 DGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query: 181 DRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE 239
           D  ++VTI    F  G  QR PR R G +H+ NN    W +YA+  S    I SQ N Y 
Sbjct: 278 DTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYS 337

Query: 240 AGQKKRTFEYYTE-KAADKLEAKSGLIRSEGDIFLKGA 276
           A       E      + D  E  +   R+EGD+   GA
Sbjct: 338 APSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGA 375

Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 153/287 (53%), Gaps = 26/287 (9%)

Query: 14  RALAGQAEGFGRFAIGGLHGPVYFVTNLSDDG----PGSLREGCRRREPLWIVFEVSGTI 69
           RALA  A GFG+ A+GG +G +Y VTN SDD     PG+LR    + +PLWI F     I
Sbjct: 54  RALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVI 113

Query: 70  HLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEHVIICNLEF------EGGR------ 116
            L + L ++SYKTIDGRG ++++  G  + ++   HVII  +        + GR      
Sbjct: 114 VLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPT 173

Query: 117 ------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTM 170
                 G D D I I  +S HIWID C      DGLID+   ST +T+S  YFTQHDK M
Sbjct: 174 HVGSRKGSDGDAIAIF-DSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVM 232

Query: 171 LIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVES 229
           L+G + ++V D+ +RVTI    F  G  +R PR+R G  H+ NN    W +YA+  S + 
Sbjct: 233 LLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADP 292

Query: 230 QIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
            I+S+ N + A       +  T++     + K    R+  D+F  GA
Sbjct: 293 TIFSEGNYFVASDDPSK-KQVTKRIDSGYDWKRWKWRTSKDVFKNGA 338

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2

 Score =  162 bits (410), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/292 (40%), Positives = 155/292 (53%), Gaps = 32/292 (10%)

Query: 14  RALAGQAEGFGRFAIGGLHGPVYFVTNLSDDG-----PGSLREGCRRREPLWIVFEVSGT 68
           + +A  A GFG  A+GG +GP Y VT+ SDD      PG+LR G  ++ PLWI F  S  
Sbjct: 64  QKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMR 123

Query: 69  IHLSSYLSVSSYKTIDGRGQRIKL-TGKGLRLKECEHVIICNLEFE-------------- 113
           I L+  L VSS KTIDGRG+ + +  G G++++   +VII NL                 
Sbjct: 124 IRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESD 183

Query: 114 ---GGRGHDV-DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
              G RG D  D I I  NS  IWID  S+    DGLID    ST+IT+S C+FT H+K 
Sbjct: 184 DHLGLRGADEGDAISIF-NSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKV 242

Query: 170 MLIGADPSHVGDRCIRVTIHHCLFDGTR--QRHPRLRFGKVHLYNNYTRNWGIYAVCASV 227
           ML GA+     DR +++T+ +  F G R  QR PR RFG  HL NN   +W  YA+  S 
Sbjct: 243 MLFGANDHAEEDRGMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSS 301

Query: 228 ESQIYSQCNIYEAGQKKRTFEY-YTEKAADKLE--AKSGLIRSEGDIFLKGA 276
            + I SQ N + A  K    E  Y EK+   +E   K   I ++GD F  GA
Sbjct: 302 GATIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWI-TDGDDFENGA 352

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1

 Score =  161 bits (407), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 152/292 (52%), Gaps = 26/292 (8%)

Query: 10  DSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDG-----PGSLREGCRRREPLWIVFE 64
           D   + LA    GFGR   GG +GP+Y VT+ SD+      PG++R    R  PLWI+F 
Sbjct: 114 DKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFA 173

Query: 65  VSGTIHLSSYLSVSSYKTIDGRGQRIKLTG-KGLRLKECEHVIICNL---EFEGGRG--- 117
            S  I L   L +++ KTIDGRG +I +TG  GL L+   +VII N+   + + G G   
Sbjct: 174 RSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLI 233

Query: 118 ------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165
                        D DGI I   + ++WID  S+ D  DG+ID    ST IT+S  +FT 
Sbjct: 234 IDSEQHFGLRTVSDGDGINIF-GATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTD 292

Query: 166 HDKTMLIGADPSHVGDRCIRVTIHHCLFDG-TRQRHPRLRFGKVHLYNNYTRNWGIYAVC 224
           HD+ ML G     V D+ +++T+    F    +QR PR+RFG VH+ NN   +W +YA+ 
Sbjct: 293 HDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIG 352

Query: 225 ASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
            ++   I SQ N + A   + + +    +     E KS   +SE D FL GA
Sbjct: 353 GNMNPTIISQGNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGA 404

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 153/288 (53%), Gaps = 26/288 (9%)

Query: 14  RALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGP-----GSLREGCRRREPLWIVFEVSGT 68
           + LA    GFG+ AIGG  G +Y VT+  +D P     G+LR    + EPLWI+F+   T
Sbjct: 99  KRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMT 158

Query: 69  IHLSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEHVIICNLEF----EGGRGH----- 118
           I L   L ++S+KT+DGRG  + ++G   + ++   ++II  L      +GG  +     
Sbjct: 159 IQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSP 218

Query: 119 ---------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
                    D DG+ I   S H+W+D CSL + +DGLID  R ST IT+S  Y T H+K 
Sbjct: 219 EHYGYRTVSDGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKV 277

Query: 170 MLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE 228
           ML+G   ++  D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S  
Sbjct: 278 MLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAN 337

Query: 229 SQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
             I SQ N + A     + E    + A + E ++   RSEGD+ L GA
Sbjct: 338 PTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGA 385

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65457|PLY17_ARATH Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 153/306 (50%), Gaps = 45/306 (14%)

Query: 9   VDSCLRA----------LAGQAEGFGRFAIGGLHGPVYFVTNLSDDG----PGSLREGCR 54
           VDSC R           LA  A GFG   +GG  G +Y VTN  D+     PGSLR G  
Sbjct: 49  VDSCWRLKSDWDVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYDNAQNPHPGSLRYGVI 108

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEHVII------ 107
           + +PLWI F     I L++ L V+SYKTIDGRG ++++  G  + +++  +VI+      
Sbjct: 109 QAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIH 168

Query: 108 -CNLEFEGG-----------RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTD 155
            C     G            +G D D I I   S ++WID C L    DGLID+   ST 
Sbjct: 169 DCKPGKSGKVRSSPTHVGHRKGSDGDAITIF-GSSNVWIDHCYLASCTDGLIDVIHASTA 227

Query: 156 ITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNY 214
           IT+S  YFTQHDK ML+G + + V D  ++VT+    F  G  +R PR+R G  H+ NN 
Sbjct: 228 ITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNR 287

Query: 215 TRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGL----IRSEGD 270
              W +YA+  S +  I+S+ N + A  K  +      K   K E K G      R+  D
Sbjct: 288 YDKWIMYAIGGSADPTIFSEGNYFIASDKSYS------KEVTKREVKGGWNNWRWRTSND 341

Query: 271 IFLKGA 276
           +F  GA
Sbjct: 342 VFKNGA 347

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 159/333 (47%), Gaps = 44/333 (13%)

Query: 16  LAGQAEGFGRFAIGGLHGPVYFVTNLSDDGP-----GSLREGCRRREPLWIVFEVSGTIH 70
           LA  A GFG+ AIGG  G +Y VT+ ++D P     G+LR    + EPLWI+F+    I 
Sbjct: 83  LADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIR 142

Query: 71  LSSYLSVSSYKTIDGRGQRIKLT-------------------------GKGLRLKECEHV 105
           L   L ++S+KTIDGRG  + +T                         G G  +K+  H 
Sbjct: 143 LKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHH 202

Query: 106 IICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165
               ++ +G      D + I    +H+WID CSL + DDGLID    ST IT+S  + T 
Sbjct: 203 TGWWMQSDG------DAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTH 255

Query: 166 HDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVC 224
           HDK ML+G   S+  D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+ 
Sbjct: 256 HDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 315

Query: 225 ASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGV 284
            S    IYSQ N + A   +   E    + A + + +    RSEGD+ L GA  +     
Sbjct: 316 GSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFR----- 370

Query: 285 GEECVFHPSEYYPTWTMEAPSDSLKQILQICTG 317
            E     PS Y    ++ A   SL   +    G
Sbjct: 371 -ESGAEAPSTYARASSLSARPSSLVGSITTTAG 402

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 154/291 (52%), Gaps = 30/291 (10%)

Query: 14  RALAGQAEGFGRFAIGGLHGPVYFVTNLSDDG-----PGSLREGCRRREPLWIVFEVSGT 68
           + +A  A GFG  AIGG  G +Y VT+ SDD      PG+LR G  ++EPLWI+F  +  
Sbjct: 63  QKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMK 122

Query: 69  IHLSSYLSVSSYKTIDGRGQRIKL-TGKGLRLKECEHVIICNLEFE-------------- 113
           I LS  L V+S KTIDGRG  + +  G G++++   ++II NL                 
Sbjct: 123 IKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESE 182

Query: 114 ---GGRGHDV-DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
              G RG D  DGI I  +S  IWID  S+    DGLID    ST+IT+S C+FT H+K 
Sbjct: 183 DHVGLRGSDEGDGISIF-SSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKV 241

Query: 170 MLIGADPSHVGDRCIRVTIHHCLFDGTR--QRHPRLRFGKVHLYNNYTRNWGIYAVCASV 227
           ML GA+  +V D+ +++T+ +  F G R  QR PR RFG  HL NN   +W  YA+  S 
Sbjct: 242 MLFGANDHYVLDKDMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSS 300

Query: 228 ESQIYSQCNIYEAGQKKRTFEY-YTEK-AADKLEAKSGLIRSEGDIFLKGA 276
            + I SQ N + A  +    E  Y EK  A   E       S+GD    GA
Sbjct: 301 GATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGA 351

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
224098198	327	predicted protein [Populus trichocarpa]	0.981	0.993	0.864	1e-169
297816804	331	pectate lyase family protein [Arabidopsi	0.984	0.984	0.843	1e-167
30694193	331	pectate lyase [Arabidopsis thaliana] gi|	0.984	0.984	0.840	1e-166
255571673	312	Pectate lyase precursor, putative [Ricin	0.942	1.0	0.891	1e-166
118483499	386	unknown [Populus trichocarpa]	0.993	0.852	0.829	1e-164
388520933	331	unknown [Lotus japonicus]	0.975	0.975	0.848	1e-164
225448815	331	PREDICTED: probable pectate lyase 4 [Vit	0.996	0.996	0.851	1e-164
224092007	333	predicted protein [Populus trichocarpa]	0.993	0.987	0.835	1e-164
7019647	341	pectate lyase-like protein [Arabidopsis	0.984	0.956	0.815	1e-164
118488640	389	unknown [Populus trichocarpa]	0.993	0.845	0.832	1e-164

>gi|224098198|ref|XP_002311134.1| predicted protein [Populus trichocarpa] gi|222850954|gb|EEE88501.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/325 (86%), Positives = 303/325 (93%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M +LPYA VDS LRA+AG+AEGFGRF+IGGLHGP+Y VT L+DDGPGSLREGCRR+EPLW
Sbjct: 1   MATLPYADVDSSLRAMAGRAEGFGRFSIGGLHGPLYSVTTLADDGPGSLREGCRRQEPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVFEVSGTI+L S LSVSSYKTIDGRGQRIK+ GKGLRLKECEHVI+CNLEFEGGRGHD+
Sbjct: 61  IVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLKECEHVIVCNLEFEGGRGHDI 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTMLIGAD SHVG
Sbjct: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADASHVG 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC F+GTRQRHPRLR+GKVHLYNNYTRNWGIYAVCASVE+QIYSQCNIYEA
Sbjct: 181 DRCIRVTIHHCFFNGTRQRHPRLRYGKVHLYNNYTRNWGIYAVCASVEAQIYSQCNIYEA 240

Query: 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
           GQKK+TFE+YTEKAAD+  A SGLIRSEGD+ L GAQ+ LL GVGE CVFHP EYYPTWT
Sbjct: 241 GQKKKTFEFYTEKAADRQGASSGLIRSEGDVLLNGAQSCLLQGVGENCVFHPGEYYPTWT 300

Query: 301 MEAPSDSLKQILQICTGWQSIPRPA 325
           +E+P DSLK +LQICTGWQSIPRPA
Sbjct: 301 LESPLDSLKDVLQICTGWQSIPRPA 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816804|ref|XP_002876285.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322123|gb|EFH52544.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 275/326 (84%), Positives = 302/326 (92%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M SLPYA  D  LRALAG+AEGFGRFA+GGLHG +Y VT+L+DDGPG+LREG RR+EPLW
Sbjct: 1   MTSLPYADADGSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKECEH+IICNLEFEGGRGHDV
Sbjct: 61  IVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDV 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTMLIGADPSHV 
Sbjct: 121 DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVE 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYAVCASVE+Q++SQCNIYEA
Sbjct: 181 DRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA 240

Query: 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
           G KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  LLTG  EECVFHPSE+YPTWT
Sbjct: 241 GVKKKTFEYYSEKAADKEEARAGLVRSENDLFLNGAQPSLLTGASEECVFHPSEHYPTWT 300

Query: 301 MEAPSDSLKQILQICTGWQSIPRPAD 326
           +E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 301 VEPPSETLKQIMQICTGWQSLSRPSD 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694193|ref|NP_191074.2| pectate lyase [Arabidopsis thaliana] gi|190886519|gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gi|192571722|gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gi|332645823|gb|AEE79344.1| pectate lyase [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/326 (84%), Positives = 302/326 (92%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M SLPYA  D  LRALAG+AEGFGRFA+GGLHG +Y VT+L+DDGPG+LREG RR+EPLW
Sbjct: 1   MTSLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKECEH+IICNLEFEGGRGHDV
Sbjct: 61  IVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDV 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTMLIGADPSHV 
Sbjct: 121 DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVE 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYAVCASVE+Q++SQCNIYEA
Sbjct: 181 DRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA 240

Query: 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
           G KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L+TG  EECVFHPSE+YPTWT
Sbjct: 241 GVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMTGASEECVFHPSEHYPTWT 300

Query: 301 MEAPSDSLKQILQICTGWQSIPRPAD 326
           +E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 301 VEPPSETLKQIMQICTGWQSLSRPSD 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571673|ref|XP_002526780.1| Pectate lyase precursor, putative [Ricinus communis] gi|223533856|gb|EEF35586.1| Pectate lyase precursor, putative [Ricinus communis]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/312 (89%), Positives = 293/312 (93%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M SLPYA VD  +RA+AG+AEGFGR AIGGLHGPVY VT L+DDGPGSLR+GCRRREPLW
Sbjct: 1   MASLPYADVDFTIRAMAGRAEGFGRLAIGGLHGPVYSVTTLADDGPGSLRDGCRRREPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVFEVSGTIHL+SYLSVSSYKTIDGRGQRIK TGKGLRLKECEH+IICNLEFE GRGHDV
Sbjct: 61  IVFEVSGTIHLNSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFESGRGHDV 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKPNS+HIWIDRCSLRDYDDGLIDITRQSTDITVSRC+FTQHDKTMLIGADPSHVG
Sbjct: 121 DGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITVSRCFFTQHDKTMLIGADPSHVG 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC FDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA
Sbjct: 181 DRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240

Query: 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
           G+KK+TFEYYTEKAADK E KSGL+RSEGD FL GAQ   LTG GEECVFHPSEYY TWT
Sbjct: 241 GEKKKTFEYYTEKAADKEETKSGLVRSEGDAFLNGAQPCFLTGNGEECVFHPSEYYQTWT 300

Query: 301 MEAPSDSLKQIL 312
           MEAPSDSLK+++
Sbjct: 301 MEAPSDSLKEVI 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/329 (82%), Positives = 299/329 (90%)

Query: 2   VSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWI 61
            +LPY HVDS LRALA QAEGFGR A GGLHGP+Y+VT L+DDGPGSLR+GCR++EPLWI
Sbjct: 56  TALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWI 115

Query: 62  VFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVD 121
           VFEVSGTI L SYL+VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG DVD
Sbjct: 116 VFEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVD 175

Query: 122 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181
           GIQIKP S+HIWIDRCSLRDYDDGLIDITR+STDIT+SRCYF QHDKTMLIGADP+HVGD
Sbjct: 176 GIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCYFGQHDKTMLIGADPTHVGD 235

Query: 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241
           RCIRVTIHHC FDGTRQRHPR+RFGKVHLYNNYTRNWGIYAVCASVESQIYSQ NIYEAG
Sbjct: 236 RCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAG 295

Query: 242 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM 301
           QKK  F+Y +EKAADK +A+SG IRSEGD+F+ G QA L+T  GE C+FHPSEYYPTWT+
Sbjct: 296 QKKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTV 355

Query: 302 EAPSDSLKQILQICTGWQSIPRPADVMIA 330
           E P+DSLKQ+LQ CTGWQ +PRPAD  +A
Sbjct: 356 EPPTDSLKQVLQHCTGWQCVPRPADQPLA 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520933|gb|AFK48528.1| unknown [Lotus japonicus]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/323 (84%), Positives = 294/323 (91%)

Query: 4   LPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVF 63
           LPY  VDS LRALAGQAEGFGR AIGGLHGP+Y VT L+DDGPGSLREGCRR++PLWIVF
Sbjct: 5   LPYGDVDSTLRALAGQAEGFGRNAIGGLHGPLYLVTTLADDGPGSLREGCRRKDPLWIVF 64

Query: 64  EVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGI 123
           +VSGTIHL SYLSVSSYKT+DGRGQRIK TGKGLRLKECEH+I+CNLEFEGGRGHDVDGI
Sbjct: 65  QVSGTIHLQSYLSVSSYKTVDGRGQRIKFTGKGLRLKECEHIIVCNLEFEGGRGHDVDGI 124

Query: 124 QIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC 183
           QIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDIT+SRC+F  HDKTMLIGADPSHVGDRC
Sbjct: 125 QIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCHFASHDKTMLIGADPSHVGDRC 184

Query: 184 IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQK 243
           IRVTIHHC FDGTRQRHPR+RFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG K
Sbjct: 185 IRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTK 244

Query: 244 KRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEA 303
           K+TFE+YTEKAADK E K+G + SEGD+FL GAQ  L T   EE +FHPSEYYPTWTMEA
Sbjct: 245 KKTFEFYTEKAADKEEQKTGFLISEGDMFLNGAQPCLPTEYKEESMFHPSEYYPTWTMEA 304

Query: 304 PSDSLKQILQICTGWQSIPRPAD 326
             +SL+ ILQ+CTGWQSI RP D
Sbjct: 305 ADNSLRDILQLCTGWQSICRPED 327

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448815|ref|XP_002276049.1| PREDICTED: probable pectate lyase 4 [Vitis vinifera] gi|296086942|emb|CBI33175.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/330 (85%), Positives = 306/330 (92%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M SLPYA VDS LR LAG+AEGFGR A+GGLHGP+Y VT L+DDGPGSLREGCRR+EPLW
Sbjct: 1   MASLPYADVDSNLRDLAGKAEGFGRLAVGGLHGPIYSVTTLADDGPGSLREGCRRQEPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVFE+SGTI+LSSYLSVSSYKTIDGRGQRIK TGKGLRLKECEH+IICNLEFEGGRGHDV
Sbjct: 61  IVFEISGTINLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDV 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKPNSRHIWIDRCSL DYDDGLIDITRQSTDITVSRCYF+QHDKTMLIGADPSH+G
Sbjct: 121 DGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITVSRCYFSQHDKTMLIGADPSHIG 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC FDGTRQR PR+RFGKVHLYNNYTRNW +YAVCASVESQIYSQ NIYEA
Sbjct: 181 DRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWSVYAVCASVESQIYSQNNIYEA 240

Query: 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
           G+KK  F+YYTE AAD  EAKSGLIRSEGD+FL GAQ+ LLTG+GEEC+FHPSEYYPTWT
Sbjct: 241 GEKKVAFKYYTEMAADMEEAKSGLIRSEGDLFLSGAQSCLLTGIGEECIFHPSEYYPTWT 300

Query: 301 MEAPSDSLKQILQICTGWQSIPRPADVMIA 330
           +E  SDSLK +LQ+CTGWQ+IPRPA++M +
Sbjct: 301 IELASDSLKNVLQVCTGWQAIPRPAELMTS 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092007|ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|222855411|gb|EEE92958.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/329 (83%), Positives = 299/329 (90%)

Query: 2   VSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWI 61
            SLPY+HVDS LRALA QAEGFGR AIGGLHGP+Y+VT L DDGPGSLR+GCR++EPLWI
Sbjct: 3   TSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWI 62

Query: 62  VFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVD 121
           VFEVSGTI L SYL+VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG DVD
Sbjct: 63  VFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVD 122

Query: 122 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181
           GIQIKP S+HIWIDRCSLRDYDDGLIDI R+STDITVSRC+F QHDKT+LIGADP+HVGD
Sbjct: 123 GIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGD 182

Query: 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241
           RCIRVTIHHC FDGTRQRHPR+RFGKVHLYNNY RNWGIYAVCASVESQIYSQCNIYEAG
Sbjct: 183 RCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAG 242

Query: 242 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM 301
           QKK  F+Y +EKAADK EA SG IRSEGD+F+ GAQA L+T  GE C+FHPSEYYPTWT+
Sbjct: 243 QKKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMTEDGEVCMFHPSEYYPTWTV 302

Query: 302 EAPSDSLKQILQICTGWQSIPRPADVMIA 330
           E P+DSLKQ+LQ CTGWQ +PRPAD  +A
Sbjct: 303 EPPTDSLKQVLQHCTGWQCVPRPADHPLA 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7019647|emb|CAB75748.1| pectate lyase-like protein [Arabidopsis thaliana]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/336 (81%), Positives = 302/336 (89%), Gaps = 10/336 (2%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSD----------DGPGSLR 50
           M SLPYA  D  LRALAG+AEGFGRFA+GGLHG +Y VT+L+D          DGPG+LR
Sbjct: 1   MTSLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADLEIGYVWILDDGPGTLR 60

Query: 51  EGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNL 110
           EG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKECEH+IICNL
Sbjct: 61  EGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNL 120

Query: 111 EFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTM 170
           EFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTM
Sbjct: 121 EFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTM 180

Query: 171 LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQ 230
           LIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYAVCASVE+Q
Sbjct: 181 LIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQ 240

Query: 231 IYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVF 290
           ++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L+TG  EECVF
Sbjct: 241 VFSQCNIYEAGVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMTGASEECVF 300

Query: 291 HPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 326
           HPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 301 HPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488640|gb|ABK96132.1| unknown [Populus trichocarpa]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/329 (83%), Positives = 298/329 (90%)

Query: 2   VSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWI 61
            SLPY+HVDS LRALA QAEGFGR AIGGLHGP+Y+VT L DDGPGSLR+GCR++EPLWI
Sbjct: 59  TSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWI 118

Query: 62  VFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVD 121
           VFEVSGTI L SYL+VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG DVD
Sbjct: 119 VFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVD 178

Query: 122 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181
           GIQIKP S+HIWIDRCSLRDYDDGLIDI R+STDITVSRC+F QHDKT+LIGADP+HVGD
Sbjct: 179 GIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGD 238

Query: 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241
           RCIRVTIHHC FDGTRQRHPR+RFGKVHLYNNY RNWGIYAVCASVESQIYSQCNIYEAG
Sbjct: 239 RCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAG 298

Query: 242 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM 301
           QKK  F+Y +EKAADK EA SG IRSEGD+F+ GAQA L+   GE C+FHPSEYYPTWT+
Sbjct: 299 QKKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMAEDGEFCMFHPSEYYPTWTI 358

Query: 302 EAPSDSLKQILQICTGWQSIPRPADVMIA 330
           E P+DSLKQ+LQ CTGWQ +PRPAD  +A
Sbjct: 359 EPPTDSLKQVLQHCTGWQCVPRPADHPLA 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2100651	331	AT3G55140 [Arabidopsis thalian	0.984	0.984	0.840	2.4e-156
TAIR|locus:2074999	378	AT3G09540 [Arabidopsis thalian	0.969	0.849	0.701	3.7e-126
TAIR|locus:2204232	368	AT1G30350 [Arabidopsis thalian	0.788	0.709	0.410	1.1e-46
TAIR|locus:2082667	501	PMR6 "powdery mildew resistant	0.782	0.516	0.408	7.5e-41
TAIR|locus:2179949	518	AT5G04310 [Arabidopsis thalian	0.486	0.310	0.403	1.2e-40
TAIR|locus:2086656	412	AT3G27400 [Arabidopsis thalian	0.598	0.480	0.364	1.3e-40
TAIR|locus:2154384	417	AT5G48900 [Arabidopsis thalian	0.474	0.376	0.415	9.7e-39
TAIR|locus:2120643	394	AT4G22090 [Arabidopsis thalian	0.465	0.390	0.391	1.9e-38
TAIR|locus:2161992	432	AT5G63180 [Arabidopsis thalian	0.474	0.363	0.402	2.6e-38
TAIR|locus:2121914	408	AT4G24780 [Arabidopsis thalian	0.474	0.384	0.389	6.1e-38

TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 274/326 (84%), Positives = 302/326 (92%)

Query:     1 MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
             M SLPYA  D  LRALAG+AEGFGRFA+GGLHG +Y VT+L+DDGPG+LREG RR+EPLW
Sbjct:     1 MTSLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLW 60

Query:    61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
             IVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKECEH+IICNLEFEGGRGHDV
Sbjct:    61 IVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDV 120

Query:   121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
             DGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTMLIGADPSHV 
Sbjct:   121 DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVE 180

Query:   181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
             DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYAVCASVE+Q++SQCNIYEA
Sbjct:   181 DRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA 240

Query:   241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWT 300
             G KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L+TG  EECVFHPSE+YPTWT
Sbjct:   241 GVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMTGASEECVFHPSEHYPTWT 300

Query:   301 MEAPSDSLKQILQICTGWQSIPRPAD 326
             +E PS++LKQI+QICTGWQS+ RP+D
Sbjct:   301 VEPPSETLKQIMQICTGWQSLSRPSD 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 226/322 (70%), Positives = 272/322 (84%)

Query:     5 PYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFE 64
             PY HVDS LR+LAG+AEGFGR A+GGL+GP+  VT+L+D+GPGSLRE C+R EPLWIVF+
Sbjct:    52 PYCHVDSSLRSLAGKAEGFGRAAVGGLNGPICHVTSLADEGPGSLREACKRPEPLWIVFD 111

Query:    65 VSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQ 124
             VSGTI+LSS+++VSS+ T+DGRGQ++K+TGKGLRLKECE+VIICNLEFEGG G D D IQ
Sbjct:   112 VSGTINLSSFVNVSSHTTVDGRGQKVKITGKGLRLKECENVIICNLEFEGGVGPDADAIQ 171

Query:   125 IKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI 184
             IKP S +IWIDRCSL++Y DGLIDITR+STDITVSRC+F  H+KTMLIGAD SHV DRCI
Sbjct:   172 IKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRCHFMNHNKTMLIGADTSHVTDRCI 231

Query:   185 RVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKK 244
             RVTIHHC FDGTRQRHPR+RF KVHL+NNYTR+W IYAV A VESQI+SQCNIYEAG+KK
Sbjct:   232 RVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWAIYAVGAGVESQIHSQCNIYEAGEKK 291

Query:   245 RTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAP 304
               F+Y TEKAADK +  +G +RSEGD+ L GA++ L  G GE  VF P ++Y  WT+E+P
Sbjct:   292 TVFKYITEKAADKEKPGAGFVRSEGDLLLNGAKSCLSQG-GERYVFSPIQHYSEWTVESP 350

Query:   305 SDSLKQILQICTGWQSIPRPAD 326
             +D LK  L+  TGWQ++P P D
Sbjct:   351 TDILKNYLKHSTGWQNLPLPLD 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 112/273 (41%), Positives = 162/273 (59%)

Query:    14 RALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCRRREPLWIVFEVSGTI 69
             +ALA  A G+G+ AIGG +GP+Y VTN SD+     PG+LR    + +PLWI F     I
Sbjct:    53 QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query:    70 HLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEHVIICNLEFEGGR----GHDVDGIQ 124
              L S L ++SYKTIDGRG ++++  G  LR+++ +HVII  +     +    G D DGI+
Sbjct:   113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query:   125 IKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI 184
             +   S H+WID C L    DGLID+   ST +T+S  YFTQHDK ML+G D S++GD+ +
Sbjct:   173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query:   185 RVTIHHCLFD-GTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQK 243
             RVTI    F  G  +R PR+R G  H+ NN    W +YA+  S    I+S+ N + A +K
Sbjct:   232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query:   244 KRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
              R+ +  T++     ++K     +  D+F+ GA
Sbjct:   292 -RSSKQVTKRMMAGPDSKRWKWGTSRDVFMNGA 323

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 114/279 (40%), Positives = 151/279 (54%)

Query:    16 LAGQAEGFGRFAIGGLHGPVYFVTNLSDDGP-----GSLREGCRRREPLWIVFEVSGTIH 70
             LA  + GFG   +GG +G +Y VT+ SD+ P     G+LR G  + EPLWIVF  +  I 
Sbjct:    99 LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query:    71 LSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEHVIICNLEF-----EGG---RGH-DV 120
             L   L ++SYKT+DGRG  + +TG G L L+  +H+II NL         G   RG  D 
Sbjct:   159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query:   121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
             DGI I   S+ IW+D CS+    DGLID    ST IT+S  YFT HD+ ML+G D ++  
Sbjct:   219 DGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query:   181 DRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE 239
             D  ++VTI    F  G  QR PR R G +H+ NN    W +YA+  S    I SQ N Y 
Sbjct:   278 DTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYS 337

Query:   240 AGQKKRTFEYYTEK--AADKLEAKSGLIRSEGDIFLKGA 276
             A       E  T++  + D  E  +   R+EGD+   GA
Sbjct:   338 APSDPSAKEV-TKRVDSKDDGEWSNWNWRTEGDLMENGA 375

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0042547 "cell wall modification involved in multidimensional cell growth" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
 Identities = 67/166 (40%), Positives = 90/166 (54%)

Query:   114 GGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI 172
             G RG  D DGI +   S HIW+D CSL    DGLID+   ST +T+S  YF+ HD+ ML+
Sbjct:   235 GFRGVSDGDGISVSA-SHHIWVDHCSLGYCADGLIDVILASTAVTISNNYFSHHDEVMLL 293

Query:   173 GADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQI 231
             G D  +  D+ ++VTI    F +G  QR PR R G +H+ NN    W +YA+  S    I
Sbjct:   294 GHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTI 353

Query:   232 YSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLI-RSEGDIFLKGA 276
              SQ N Y A       E  T++     +  SG   R+EGD+ + GA
Sbjct:   354 NSQGNRYTAPIDPNAKEV-TKRVDSNEKHWSGWNWRTEGDVMVNGA 398

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
 Identities = 75/206 (36%), Positives = 102/206 (49%)

Query:   119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
             D D + I    +H+WID CSL + DDGLID    ST IT+S  + T HDK ML+G   S+
Sbjct:   210 DGDAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSY 268

Query:   179 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 237
               D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S    IYSQ N 
Sbjct:   269 TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNR 328

Query:   238 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYP 297
             + A   +   E    + A + + +    RSEGD+ L GA  +     G E    PS Y  
Sbjct:   329 FLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFR---ESGAEA---PSTYAR 382

Query:   298 TWTMEAPSDSLKQILQICTGWQSIPR 323
               ++ A   SL   +    G  S  R
Sbjct:   383 ASSLSARPSSLVGSITTTAGTLSCRR 408

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
 Identities = 66/159 (41%), Positives = 89/159 (55%)

Query:   119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
             D DGI I  +S HIWID  SL +  DGLID    ST IT+S  YFT H++ ML+G   ++
Sbjct:   215 DGDGISIFGSS-HIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTY 273

Query:   179 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 237
               D+ ++VTI +  F +G  QR PR R G  H+ NN   +W +YA+  S    I SQ N 
Sbjct:   274 TRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNR 333

Query:   238 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
             Y A + +   E      A + + +    RSEGD+FL GA
Sbjct:   334 YLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGA 372

GO:0005576 "extracellular region" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2120643 AT4G22090 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
 Identities = 65/166 (39%), Positives = 89/166 (53%)

Query:   116 RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175
             +G D D I I  +S ++WID C L    DGLID+   ST IT+S  YFTQHDK ML+G +
Sbjct:   189 KGSDGDAITIFGSS-NVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHN 247

Query:   176 PSHVGDRCIRVTIHHCLFD-GTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQ 234
              + V D  ++VT+    F  G  +R PR+R G  H+ NN    W +YA+  S +  I+S+
Sbjct:   248 DNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSE 307

Query:   235 CNIYEAGQKKRTFEYYTEKAADKLEAKSGLI----RSEGDIFLKGA 276
              N + A  K      Y+ K   K E K G      R+  D+F  GA
Sbjct:   308 GNYFIASDKS-----YS-KEVTKREVKGGWNNWRWRTSNDVFKNGA 347

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.6e-38, Sum P(2) = 2.6e-38
 Identities = 64/159 (40%), Positives = 89/159 (55%)

Query:   119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
             D DG+ I   S H+W+D CSL + +DGLID  R ST IT+S  Y T H+K ML+G   ++
Sbjct:   228 DGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTY 286

Query:   179 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 237
               D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S    I SQ N 
Sbjct:   287 EQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR 346

Query:   238 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
             + A     + E    + A + E ++   RSEGD+ L GA
Sbjct:   347 FLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGA 385

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 6.1e-38, Sum P(2) = 6.1e-38
 Identities = 62/159 (38%), Positives = 86/159 (54%)

Query:   119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
             D DG+ I   S H+W+D CS  + +DGLID    ST IT+S  + T HDK ML+G   ++
Sbjct:   206 DGDGVSIFGGS-HVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTY 264

Query:   179 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 237
               D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S    I SQ N 
Sbjct:   265 SRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR 324

Query:   238 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
             + A   + + E    + A + E K    RS GD+ L GA
Sbjct:   325 FLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGA 363

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
smart00656	190	smart00656, Amb_all, Amb_all domain	8e-71
COG3866	345	COG3866, PelB, Pectate lyase [Carbohydrate transpo	1e-47
pfam00544	200	pfam00544, Pec_lyase_C, Pectate lyase	3e-40

>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain

 Score =  217 bits (556), Expect = 8e-71
 Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 13/179 (7%)

Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR---GHDVDGIQIKPNSRH 131
           + ++S KTIDGRG ++++ G GL +K   +VII NL     +   G D D I I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSN 70

Query: 132 IWIDRCSLRD---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR 182
           +WID  SL             DGLIDI   ST +T+S  YF  H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 183 CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241
            +RVTI H  F   RQR PR+RFG VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190

>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]

 Score =  163 bits (414), Expect = 1e-47
 Identities = 93/298 (31%), Positives = 135/298 (45%), Gaps = 37/298 (12%)

Query: 29  GGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSS------YLSVSSYKT 82
           GG  G +  V   +D     L           ++  V GTI  S+       + + S KT
Sbjct: 50  GGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKT 104

Query: 83  IDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHD--VDGIQIKPNSRHIWIDRCSLR 140
           I G G    L G GL++++  +VII NL FEG    D   D I I  +  +IWID  +  
Sbjct: 105 IVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFS 164

Query: 141 DYD--------DGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDRCIRVTIHHC 191
                      DGL+DI + +  IT+S   F  HDK+ L+G +D S+  D   +VTIHH 
Sbjct: 165 GGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHN 224

Query: 192 LFDGTRQRHPRLRFGKVHLYNNYTRNWGIY--AVCASVESQIYSQCNIYEAGQKKRTFEY 249
            F    QR PR+RFG VH+YNNY      +  A+     ++IY + N +E G +   F  
Sbjct: 225 YFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGF-- 282

Query: 250 YTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVF-HPSEYYPTWTMEAPSD 306
                  K    SG    +   +L  +++     V    V  +PS YY  +T++ P D
Sbjct: 283 ----LDTK--GTSGYANQDSGSYLNSSKS---MSVRAGGVTWNPSSYYS-YTVDPPED 330

Length = 345

>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase

 Score =  139 bits (352), Expect = 3e-40
 Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 21/195 (10%)

Query: 62  VFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKE-CEHVIICNLEFE------- 113
           V   + TI   + ++V + KTI GRG  + L   G+R+ +   +VII NL          
Sbjct: 5   VITSNKTIDSLTKVNVGANKTIIGRGANVSLANIGIRITKNSSNVIIQNLRIHHNIRVNP 64

Query: 114 --GGRGH--DVDGIQIKPNSRHIWIDRCSLRDYD--------DGLIDITRQSTDITVSRC 161
              G G   D D IQI  NS +IWID CSL  ++        DGL+DI   ST +T+S C
Sbjct: 65  HHEGPGGAKDGDAIQID-NSGNIWIDHCSLSGHNFSDDDGSFDGLVDIKEGSTYVTISNC 123

Query: 162 YFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIY 221
            FT H K ML G   S+  D+ +RVT+ H  F+   QR PR R+G  H+YNN   NW  Y
Sbjct: 124 LFTNHKKVMLFGHSDSNSQDKGMRVTLAHNYFNNVNQRMPRCRYGYFHVYNNLYVNWFQY 183

Query: 222 AVCASVESQIYSQCN 236
           A   S    I S+ N
Sbjct: 184 AFGGSQNGTILSEGN 198

This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	100.0
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	100.0
smart00656	190	Amb_all Amb_all domain.	100.0
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.16
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	98.94
PLN02218	431	polygalacturonase ADPG	98.3
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	98.28
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.28
PLN03003	456	Probable polygalacturonase At3g15720	98.23
PLN02793	443	Probable polygalacturonase	98.23
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	98.22
PLN02218	431	polygalacturonase ADPG	98.22
PLN02155	394	polygalacturonase	98.22
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	98.16
PLN03010	409	polygalacturonase	98.03
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	97.97
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.93
PLN02793	443	Probable polygalacturonase	97.93
PLN03003	456	Probable polygalacturonase At3g15720	97.84
PLN03010	409	polygalacturonase	97.82
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	97.77
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.57
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	97.57
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.56
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	97.51
PLN02197	588	pectinesterase	97.49
PLN02155	394	polygalacturonase	97.47
PLN02480	343	Probable pectinesterase	97.47
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.4
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.34
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	97.32
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	97.14
smart00656	190	Amb_all Amb_all domain.	97.09
PLN02176	340	putative pectinesterase	97.09
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	96.96
PLN02432	293	putative pectinesterase	96.92
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	96.78
PLN02301	548	pectinesterase/pectinesterase inhibitor	96.7
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	96.65
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	96.64
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	96.59
PLN02682	369	pectinesterase family protein	96.57
PLN02497	331	probable pectinesterase	96.55
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	96.49
PLN02665	366	pectinesterase family protein	96.48
PLN02773	317	pectinesterase	96.47
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	96.44
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	96.43
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	96.37
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	96.3
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	96.23
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	96.23
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	96.23
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	96.17
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	96.08
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	96.03
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	96.03
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	95.99
PLN02313	587	Pectinesterase/pectinesterase inhibitor	95.98
PLN02916	502	pectinesterase family protein	95.92
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	95.91
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	95.84
PLN02304	379	probable pectinesterase	95.72
PLN02314	586	pectinesterase	95.62
PLN02634	359	probable pectinesterase	94.95
PRK10531	422	acyl-CoA thioesterase; Provisional	94.77
PLN02671	359	pectinesterase	94.65
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	93.79
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	93.08
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	92.72
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	87.38
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	83.25
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	82.24

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-64  Score=467.66  Aligned_cols=286  Identities=32%  Similarity=0.533  Sum_probs=242.4

Q ss_pred             CCcccccC-------CCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC------ceeEeccceeee
Q 020121           18 GQAEGFGR-------FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS------SYLSVSSYKTID   84 (331)
Q Consensus        18 ~~a~Gfg~-------~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~------~~l~v~sn~TI~   84 (331)
                      .+.+|||+       +||||.||++++|.|.+|     |..++++.+|.++|+.|.|+|+++      ..|++.+||||+
T Consensus        32 ~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTiv  106 (345)
T COG3866          32 NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIV  106 (345)
T ss_pred             ccccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEE
Confidence            34889986       589999999999999999     999999999997778899999998      356778999999


Q ss_pred             eeccceEEecCcEEEeeeccEEEeeeEEecCCCCC--CCceEEcCCCceEEEeeeeeec--------CCCCeeeeecCCc
Q 020121           85 GRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHD--VDGIQIKPNSRHIWIDRCSLRD--------YDDGLIDITRQST  154 (331)
Q Consensus        85 G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~~~--~D~I~i~~~~~nVwIDHcs~s~--------~~Dg~~di~~~s~  154 (331)
                      |.|..++|.|++|.|+.+.|||||||+|++-..+|  .|+|+|+..++|||||||+|..        ..||++|++++++
T Consensus       107 G~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~An  186 (345)
T COG3866         107 GSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDAN  186 (345)
T ss_pred             eeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCc
Confidence            99999999999999999999999999999865444  4999996689999999999987        6899999999999


Q ss_pred             eEEEeccEEeccCceeeecCCCCC-CCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeeccC--ceE
Q 020121          155 DITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE--SQI  231 (331)
Q Consensus       155 ~vTiS~n~f~~h~k~~liG~~~~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~--a~v  231 (331)
                      +||||||+|++|+|.+|+|++|+. .+|++++||||||||.|+.+|+||+|||.+|+|||||+....|++..+++  |++
T Consensus       187 yITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Aki  266 (345)
T COG3866         187 YITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKI  266 (345)
T ss_pred             EEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEE
Confidence            999999999999999999999875 45677999999999999999999999999999999999776666666666  999


Q ss_pred             EEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccCCchHHHHHH
Q 020121          232 YSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQI  311 (331)
Q Consensus       232 ~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~  311 (331)
                      ++|+|||++...+..|-.        ....+||+..+-+.+++.+......  .+...|.|+.+|+ |++++++ .||++
T Consensus       267 yvE~NyF~~~~~~~~f~d--------t~~~~GY~~~d~gsy~~~s~~~~~~--~~G~~w~ps~~Y~-Ytvd~~~-dVks~  334 (345)
T COG3866         267 YVENNYFENGSEGLGFLD--------TKGTSGYANQDSGSYLNSSKSMSVR--AGGVTWNPSSYYS-YTVDPPE-DVKSF  334 (345)
T ss_pred             EEecceeccCCCCceeee--------cCCccceEEeccCceecccCCcccc--cCCccCCCCCCcc-cccCChH-Hhhhh
Confidence            999999999866544421        1112499985555555543321111  2337899999995 9999996 69999


Q ss_pred             HHhcccCCC
Q 020121          312 LQICTGWQS  320 (331)
Q Consensus       312 v~~~AG~~~  320 (331)
                      |.++||+..
T Consensus       335 Vt~yAGaGk  343 (345)
T COG3866         335 VTNYAGAGK  343 (345)
T ss_pred             hhcccccee
Confidence            999999764

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=100.00  E-value=2.6e-52  Score=377.29  Aligned_cols=177  Identities=46%  Similarity=0.737  Sum_probs=158.4

Q ss_pred             EEEEeeeEEEeCceeEeccceeeeeeccceEEecCcEEEe-eeccEEEeeeEEecC----------C--CCCCCceEEcC
Q 020121           61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP  127 (331)
Q Consensus        61 Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~G~gi~i~-~~~NVIIrnL~i~~g----------~--~~~~D~I~i~~  127 (331)
                      +||+++|+|++..+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+..          .  ..+.|+|+++ 
T Consensus         3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-   81 (200)
T PF00544_consen    3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-   81 (200)
T ss_dssp             EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred             EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence            4788999999999999999999999999999999999997 899999999999981          1  2578999998 


Q ss_pred             CCceEEEeeeeeecC--------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCC
Q 020121          128 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR  199 (331)
Q Consensus       128 ~~~nVwIDHcs~s~~--------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R  199 (331)
                      +++|||||||+|+|.        .||++|++.++++||||||+|++|+|++|+|+++....+..++||||||||+++.+|
T Consensus        82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R  161 (200)
T PF00544_consen   82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR  161 (200)
T ss_dssp             STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred             ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence            889999999999999        999999999999999999999999999999998877667779999999999999999


Q ss_pred             CcccccCeEEEEcceEeccccceeeeccCceEEEEceEE
Q 020121          200 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY  238 (331)
Q Consensus       200 ~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f  238 (331)
                      +||+|+|++|+|||||+++..|+++++++|++++|+|||
T Consensus       162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            999999999999999999999999999999999999999

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>smart00656 Amb_all Amb_all domain

Probab=100.00  E-value=1.6e-48  Score=349.98  Aligned_cols=168  Identities=44%  Similarity=0.712  Sum_probs=157.6

Q ss_pred             ceeEeccceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecC-------
Q 020121           73 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY-------  142 (331)
Q Consensus        73 ~~l~v~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~-------  142 (331)
                      .+|.|+|||||+|+|++++|.|.+|++++++|||||||+|+++..   ++.|+|.++ ++++||||||+|+|.       
T Consensus        10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~   88 (190)
T smart00656       10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD   88 (190)
T ss_pred             ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence            568899999999999999999999999989999999999998754   578999997 799999999999998       


Q ss_pred             --CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEecccc
Q 020121          143 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI  220 (331)
Q Consensus       143 --~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~  220 (331)
                        .|+++|++.++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus        89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~  168 (190)
T smart00656       89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS  168 (190)
T ss_pred             CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence              899999999999999999999999999999998876555578999999999999999999999999999999999998


Q ss_pred             ceeeeccCceEEEEceEEecC
Q 020121          221 YAVCASVESQIYSQCNIYEAG  241 (331)
Q Consensus       221 ~~~~~~~~a~v~~e~N~f~~~  241 (331)
                      |+++.+.++++++|+|||++.
T Consensus       169 ~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      169 YAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             EeEecCCCcEEEEECeEEECC
Confidence            999999999999999999864

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.16  E-value=3.6e-09  Score=102.17  Aligned_cols=120  Identities=25%  Similarity=0.341  Sum_probs=79.8

Q ss_pred             HHHHhhcCCCeEEEEEeeeEEEeCceeEec-cceeeeeeccc-eEEe-------cCcEEEeeeccEEEeeeEEecCCCCC
Q 020121           49 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD  119 (331)
Q Consensus        49 Lr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g-~~i~-------G~gi~i~~~~NVIIrnL~i~~g~~~~  119 (331)
                      ||+|+.+..|...++=-.|+-++++.|.|. +++||.|.|.. ..|.       +.+|.+. ++||.|++|+++..   .
T Consensus         1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~---~   76 (314)
T TIGR03805         1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENT---K   76 (314)
T ss_pred             CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcC---C
Confidence            688998888875444356788877888887 89999998753 4444       2346554 78888888888764   2


Q ss_pred             CCceEEcCCCceEEEeeeeeecC--------CCCeeeeecCCceEEEeccEEecc-CceeeecCC
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQH-DKTMLIGAD  175 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~~--------~Dg~~di~~~s~~vTiS~n~f~~h-~k~~liG~~  175 (331)
                      .+||.+. +++++.|++|.+.|.        .+|+ .. ..+.+++|.+|.++.. +.+..++.+
T Consensus        77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~GI-~~-~~s~~v~I~~n~i~g~~d~GIyv~~s  138 (314)
T TIGR03805        77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYGI-YP-VESTNVLVEDSYVRGASDAGIYVGQS  138 (314)
T ss_pred             CCeEEEe-CCCCEEEEeeEEEeccCccccCCcceE-EE-eccCCEEEECCEEECCCcccEEECCC
Confidence            4677775 677777777777643        3343 33 2467777777777653 334444443

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=98.94  E-value=1.1e-08  Score=101.36  Aligned_cols=193  Identities=15%  Similarity=0.225  Sum_probs=93.0

Q ss_pred             ecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeCceeEec------cceeeeee-ccceEEecCc-EEEeeeccEEEee
Q 020121           38 VTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICN  109 (331)
Q Consensus        38 Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~------sn~TI~G~-g~g~~i~G~g-i~i~~~~NVIIrn  109 (331)
                      |+|.++     |++||++..|...++=..|+-+ ...|.+.      ..+||..+ ..++.|.|.. |+|. .+.++|++
T Consensus         1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G   73 (425)
T PF14592_consen    1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG   73 (425)
T ss_dssp             E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred             CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence            667776     9999998877665554677766 2345542      46888887 4467888765 7776 78999999


Q ss_pred             eEEecCCCCC---------C-----Cce--------------------EE---cCCCceEEEeeeeeecC--CCCeeeee
Q 020121          110 LEFEGGRGHD---------V-----DGI--------------------QI---KPNSRHIWIDRCSLRDY--DDGLIDIT  150 (331)
Q Consensus       110 L~i~~g~~~~---------~-----D~I--------------------~i---~~~~~nVwIDHcs~s~~--~Dg~~di~  150 (331)
                      |.|+.+....         .     +-.                    .+   .-.+++--||||.|..-  ..-++-+.
T Consensus        74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~  153 (425)
T PF14592_consen   74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR  153 (425)
T ss_dssp             -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred             eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence            9998642100         0     000                    11   00133444699999752  22333332


Q ss_pred             -------cCCceEEEeccEEecc-------CceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc--ccCeEEEEcce
Q 020121          151 -------RQSTDITVSRCYFTQH-------DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFGKVHLYNNY  214 (331)
Q Consensus       151 -------~~s~~vTiS~n~f~~h-------~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~G~~hv~NN~  214 (331)
                             ....+-+|.+|+|..+       ..++-||.+.....+  -+.++.||||.+|..-.=-+  +.+...++||.
T Consensus       154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt  231 (425)
T PF14592_consen  154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT  231 (425)
T ss_dssp             -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred             ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence                   1245788999999843       456778876433222  26789999999999875444  33556677777


Q ss_pred             EeccccceeeeccCceEEEEceEEec
Q 020121          215 TRNWGIYAVCASVESQIYSQCNIYEA  240 (331)
Q Consensus       215 ~~n~~~~~~~~~~~a~v~~e~N~f~~  240 (331)
                      |++... .+..|-+-.-.+++|||..
T Consensus       232 f~es~G-~ltlRHGn~n~V~gN~FiG  256 (425)
T PF14592_consen  232 FRESQG-SLTLRHGNRNTVEGNVFIG  256 (425)
T ss_dssp             EES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred             EEeccc-eEEEecCCCceEeccEEec
Confidence            766542 3333333334445666654

>PLN02218 polygalacturonase ADPG

Probab=98.30  E-value=1.7e-05  Score=79.90  Aligned_cols=103  Identities=20%  Similarity=0.324  Sum_probs=73.5

Q ss_pred             EEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCC
Q 020121           98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  176 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~  176 (331)
                      .+..++||+|+||+|.... ....|||.+. +++||+|.+|.+.-+.| ++.++.++++|+|++|.+. +.-+.-||+-.
T Consensus       219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~n~~c~-~GHGisIGS~g  295 (431)
T PLN02218        219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDD-CISIESGSQNVQINDITCG-PGHGISIGSLG  295 (431)
T ss_pred             EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCc-eEEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence            3345677777777777532 3467999997 89999999999998755 5689989999999999995 33456788753


Q ss_pred             CCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121          177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                      ... .+.--+|++.++.|.++. +.=|++
T Consensus       296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK  323 (431)
T PLN02218        296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK  323 (431)
T ss_pred             CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence            221 222347889888887753 344443

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=98.28  E-value=4.6e-05  Score=76.30  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             hHHHHhhcCC-Ce-EEEEEeeeEEEeCceeEeccceeeeeeccceE---EecCc-EE-EeeeccEEEeeeEEecCCC---
Q 020121           48 SLREGCRRRE-PL-WIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGRG---  117 (331)
Q Consensus        48 sLr~ai~~~~-pr-~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~---i~G~g-i~-i~~~~NVIIrnL~i~~g~~---  117 (331)
                      .|++||++.. |. +|++ -.|+- +.++|.+.+++||.|+. +++   |.|.+ +. -..++||.|++|+|++...   
T Consensus        56 ALQaAIdaAa~gG~tV~L-p~G~Y-~~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~  132 (455)
T TIGR03808        56 ALQRAIDEAARAQTPLAL-PPGVY-RTGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP  132 (455)
T ss_pred             HHHHHHHHhhcCCCEEEE-CCCce-ecccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence            4999997643 32 2332 23332 34678888999999984 343   66554 22 2359999999999997542   


Q ss_pred             CCCCceEEcCCCceEEEeeeeeecCC-CCeeeeecCCc
Q 020121          118 HDVDGIQIKPNSRHIWIDRCSLRDYD-DGLIDITRQST  154 (331)
Q Consensus       118 ~~~D~I~i~~~~~nVwIDHcs~s~~~-Dg~~di~~~s~  154 (331)
                      ...-+|.+. .++++-|.+|.+.... .|. ++. +++
T Consensus       133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FGI-~L~-~~~  167 (455)
T TIGR03808       133 QRRGLIHCQ-GGRDVRITDCEITGSGGNGI-WLE-TVS  167 (455)
T ss_pred             CCCCEEEEc-cCCceEEEeeEEEcCCcceE-EEE-cCc
Confidence            235578885 8999999999999884 775 453 344

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.28  E-value=1.8e-05  Score=66.49  Aligned_cols=133  Identities=17%  Similarity=0.278  Sum_probs=88.5

Q ss_pred             cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      ||.+.+..++.|++.+|+..   ..+||.+. .+..+.|++|+|.+...++ .+. ...++++++|.|.+...+..+-..
T Consensus         2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~gi-~~~-~~~~~~i~~~~~~~~~~~i~~~~~   75 (158)
T PF13229_consen    2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYGI-YVS-GGSNVTISNNTISDNGSGIYVSGS   75 (158)
T ss_dssp             CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTSE-EEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred             EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcEE-EEe-cCCCeEEECeEEEEccceEEEEec
Confidence            57787788999999999974   46899997 6677899999999955554 564 458999999999987744443322


Q ss_pred             CCCCCCcceEEEEeceeecCCCCCCcccc--cCeEEEEcceEeccccceeeeccCc--eEEEEceEEecCC
Q 020121          176 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQ  242 (331)
Q Consensus       176 ~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~~~~~~~~a--~v~~e~N~f~~~~  242 (331)
                      .        ++++.+|.+.++..-.=.+.  ...+.+.||.+.+....++......  .+.+++|.|....
T Consensus        76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~  138 (158)
T PF13229_consen   76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG  138 (158)
T ss_dssp             C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred             C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence            1        57888888888765433332  2357899999988776777666655  8888999987654

>PLN03003 Probable polygalacturonase At3g15720

Probab=98.23  E-value=4.7e-05  Score=76.94  Aligned_cols=104  Identities=24%  Similarity=0.419  Sum_probs=77.1

Q ss_pred             EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      +.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++++|+|++|.+.. .-+.-||+-
T Consensus       164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl  240 (456)
T PLN03003        164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL  240 (456)
T ss_pred             EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence            45556888888888888653 3567999997 899999999999887666 5898889999999999863 335678875


Q ss_pred             CCCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121          176 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       176 ~~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                      .... .+.--+|++.++.|.++. +.=|++
T Consensus       241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK  269 (456)
T PLN03003        241 GKDGETATVENVCVQNCNFRGTM-NGARIK  269 (456)
T ss_pred             cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence            3321 222358999999998763 333553

>PLN02793 Probable polygalacturonase

Probab=98.23  E-value=1.9e-05  Score=79.76  Aligned_cols=103  Identities=22%  Similarity=0.321  Sum_probs=72.5

Q ss_pred             EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      |.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++.+|+|++|.+.. .-+.-||+-
T Consensus       203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl  279 (443)
T PLN02793        203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL  279 (443)
T ss_pred             EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence            34445677777777776543 3467999997 899999999999877665 5788889999999999863 335668874


Q ss_pred             CCC-CCCcceEEEEeceeecCCCCCCccc
Q 020121          176 PSH-VGDRCIRVTIHHCLFDGTRQRHPRL  203 (331)
Q Consensus       176 ~~~-~~d~~~~vT~hhN~f~~~~~R~Pr~  203 (331)
                      ... ....-.+|++.++.|.+.. +.=|+
T Consensus       280 g~~~~~~~V~nV~v~n~~~~~t~-~GirI  307 (443)
T PLN02793        280 GKSNSWSEVRDITVDGAFLSNTD-NGVRI  307 (443)
T ss_pred             cCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence            221 1122347999999888764 33444

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=98.22  E-value=3.4e-05  Score=77.10  Aligned_cols=95  Identities=21%  Similarity=0.371  Sum_probs=69.3

Q ss_pred             eeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC
Q 020121          100 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH  178 (331)
Q Consensus       100 ~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~  178 (331)
                      ..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.| .+.++.++++|+|+++... +.-++-||+-...
T Consensus       184 ~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~-~ghGisiGSlG~~  260 (404)
T PLN02188        184 VECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCG-PGHGISVGSLGRY  260 (404)
T ss_pred             EccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEc-CCCcEEeCCCCCC
Confidence            34667777777776532 3467999997 89999999999998877 5589888999999999885 3346677873221


Q ss_pred             -CCCcceEEEEeceeecCCC
Q 020121          179 -VGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       179 -~~d~~~~vT~hhN~f~~~~  197 (331)
                       ....--+|++.++.|.++.
T Consensus       261 ~~~~~V~nV~v~n~~~~~t~  280 (404)
T PLN02188        261 PNEGDVTGLVVRDCTFTGTT  280 (404)
T ss_pred             CcCCcEEEEEEEeeEEECCC
Confidence             1122348899999888763

>PLN02218 polygalacturonase ADPG

Probab=98.22  E-value=0.00018  Score=72.55  Aligned_cols=138  Identities=16%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      |++.+++|+.|++|+|+....|   .|.+. .++||+|++.++..     ..||. |+ ..+.+|+|++|.|...+-+.-
T Consensus       195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIa  268 (431)
T PLN02218        195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCIS  268 (431)
T ss_pred             EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEE
Confidence            5667899999999999986543   57776 79999999999864     57886 88 468999999999998888777


Q ss_pred             ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-ccCeEEEEcceEeccccceeee--c-----cCceEEEEce
Q 020121          172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA--S-----VESQIYSQCN  236 (331)
Q Consensus       172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~--~-----~~a~v~~e~N  236 (331)
                      |.+..       .+|++.++++.....       +.+.- ..-.+++.|+.+.+.. .++..  .     .-.+|.+++.
T Consensus       269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni  340 (431)
T PLN02218        269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI  340 (431)
T ss_pred             ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence            76542       268888777743221       10000 0014567777776643 34321  1     1235666777


Q ss_pred             EEecCCcceeee
Q 020121          237 IYEAGQKKRTFE  248 (331)
Q Consensus       237 ~f~~~~~~~~~~  248 (331)
                      .+++...+..++
T Consensus       341 ~m~~V~~pI~Id  352 (431)
T PLN02218        341 QMENVKNPIIID  352 (431)
T ss_pred             EEEcccccEEEE
Confidence            777665554443

>PLN02155 polygalacturonase

Probab=98.22  E-value=2.7e-05  Score=77.56  Aligned_cols=100  Identities=17%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             eeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC
Q 020121          100 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH  178 (331)
Q Consensus       100 ~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~  178 (331)
                      ..++||.|+||+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++.+|+|++|.+.. .-+.-||+....
T Consensus       174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~~  250 (394)
T PLN02155        174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAKE  250 (394)
T ss_pred             ECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccccc
Confidence            34566666666666532 3457999997 899999999999988885 5888889999999998874 345678875321


Q ss_pred             -CCCcceEEEEeceeecCCCCCCccc
Q 020121          179 -VGDRCIRVTIHHCLFDGTRQRHPRL  203 (331)
Q Consensus       179 -~~d~~~~vT~hhN~f~~~~~R~Pr~  203 (331)
                       ....-.+|++.++.|.+.. +.=|+
T Consensus       251 ~~~~~V~nV~v~n~~~~~t~-~GirI  275 (394)
T PLN02155        251 LNEDGVENVTVSSSVFTGSQ-NGVRI  275 (394)
T ss_pred             CCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence             1222348999999998753 33344

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=98.16  E-value=0.00022  Score=69.11  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             cceeeeeeccceEEe---cCcEEEeeeccEEEeeeEEecCCC----CCCCceEEcCCCceEEEeeeeeecCCCCeeeeec
Q 020121           79 SYKTIDGRGQRIKLT---GKGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR  151 (331)
Q Consensus        79 sn~TI~G~g~g~~i~---G~gi~i~~~~NVIIrnL~i~~g~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~  151 (331)
                      +++||.+.    +|.   +.+|.+.+++|++||++++.....    ...+||.+. .++++.|.+|.++...|--+.+. 
T Consensus        63 ~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv~-  136 (314)
T TIGR03805        63 DDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYVG-  136 (314)
T ss_pred             CCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEEC-
Confidence            56666664    222   357888889999999999974321    246889997 79999999999998877445663 


Q ss_pred             CCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCC--------cccccCeEEEEcceEeccc----
Q 020121          152 QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--------PRLRFGKVHLYNNYTRNWG----  219 (331)
Q Consensus       152 ~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--------Pr~r~G~~hv~NN~~~n~~----  219 (331)
                      .+++++|++|.+.+..++..+-.+.        ++.+.+|.+.++..--        |.+....+.++||.+.+..    
T Consensus       137 ~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~  208 (314)
T TIGR03805       137 QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNF  208 (314)
T ss_pred             CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCC
Confidence            6889999999998776666654432        3456666665543221        1121235677777665321    


Q ss_pred             ------------cceeeeccCceEEEEceEEecCCccee
Q 020121          220 ------------IYAVCASVESQIYSQCNIYEAGQKKRT  246 (331)
Q Consensus       220 ------------~~~~~~~~~a~v~~e~N~f~~~~~~~~  246 (331)
                                  ..++......++.+++|.|.......+
T Consensus       209 ~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i  247 (314)
T TIGR03805       209 APAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV  247 (314)
T ss_pred             cccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence                        112222333577888999987665443

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PLN03010 polygalacturonase

Probab=98.03  E-value=0.0013  Score=65.92  Aligned_cols=112  Identities=26%  Similarity=0.458  Sum_probs=71.3

Q ss_pred             cceeeeeeccceEEecCc------EEEeeeccEEEeeeEEecC-----------------------C-CCCCCceEEcCC
Q 020121           79 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGG-----------------------R-GHDVDGIQIKPN  128 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~g------i~i~~~~NVIIrnL~i~~g-----------------------~-~~~~D~I~i~~~  128 (331)
                      .|++|.|.|   +|.|.|      |++.+++||.|++|+++..                       . ....|||.+. .
T Consensus       139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~-~  214 (409)
T PLN03010        139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDIS-Y  214 (409)
T ss_pred             cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeee-c
Confidence            466776643   455544      4455555555555555432                       2 2457999997 7


Q ss_pred             CceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC-CCCcceEEEEeceeecCC
Q 020121          129 SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       129 ~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~-~~d~~~~vT~hhN~f~~~  196 (331)
                      +++|+|.+|.+..+.|. +.++.++++++|.++.... .-+.-||+.... ..+.--+|++.++.|.+.
T Consensus       215 s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t  281 (409)
T PLN03010        215 STNINIFDSTIQTGDDC-IAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQT  281 (409)
T ss_pred             cceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence            89999999999877555 5888777777777665542 225667764322 122234788888888765

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=97.97  E-value=0.00079  Score=60.23  Aligned_cols=172  Identities=19%  Similarity=0.281  Sum_probs=95.6

Q ss_pred             hHHHHh--hc-CCCeEEEEEeeeEEEeCceeEeccceeeeeeccce-EEe--cCc--E-------EEee-ecc--EEEee
Q 020121           48 SLREGC--RR-REPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GKG--L-------RLKE-CEH--VIICN  109 (331)
Q Consensus        48 sLr~ai--~~-~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~-~i~--G~g--i-------~i~~-~~N--VIIrn  109 (331)
                      .||+||  .+ ....+|.| -.|+-.++++|.+.++++|.|.|... .+.  +..  +       .+.. ..+  +.|+|
T Consensus        20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n   98 (225)
T PF12708_consen   20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN   98 (225)
T ss_dssp             HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred             HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence            399999  33 34454444 68899999999999999999997633 333  111  1       1111 122  44999


Q ss_pred             eEEecCCCCC---CCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEec------cEEeccCceeeecCCCCCCC
Q 020121          110 LEFEGGRGHD---VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR------CYFTQHDKTMLIGADPSHVG  180 (331)
Q Consensus       110 L~i~~g~~~~---~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~------n~f~~h~k~~liG~~~~~~~  180 (331)
                      |+|.......   ..+|.+. .++++||++|++.......+.+. ..+...+.+      +.|+++..            
T Consensus        99 l~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------  164 (225)
T PF12708_consen   99 LTIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------  164 (225)
T ss_dssp             EEEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE------------
T ss_pred             eEEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee------------
Confidence            9999765322   4678886 78999999999998654444553 122222222      22222110            


Q ss_pred             CcceEEEEeceeecCCCCCCccccc--CeEEEEcceEeccccceeeeccCceEEEEceEEecC
Q 020121          181 DRCIRVTIHHCLFDGTRQRHPRLRF--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG  241 (331)
Q Consensus       181 d~~~~vT~hhN~f~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~  241 (331)
                          .+.....++.....-   +..  -.+.+.|+++.+....++....+..+.+++|.|++.
T Consensus       165 ----~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~  220 (225)
T PF12708_consen  165 ----NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENC  220 (225)
T ss_dssp             ----EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESS
T ss_pred             ----EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECC
Confidence                111111112111111   111  245677777777445677776666777777777754

...

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.93  E-value=6.5e-05  Score=72.97  Aligned_cols=104  Identities=26%  Similarity=0.482  Sum_probs=74.2

Q ss_pred             EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      +.+..++||.|++|+|+... ....|||.+. +++||.|++|.+..+.|. +.++..+.+|+|++|.|.. ..+.-||+.
T Consensus       118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~  194 (326)
T PF00295_consen  118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE  194 (326)
T ss_dssp             EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred             EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence            56667899999999998653 2467999997 899999999999877555 5788777899999999974 444667754


Q ss_pred             CCCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121          176 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       176 ~~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                      .... ...--+|+|.++.|.++. |.-|++
T Consensus       195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK  223 (326)
T PF00295_consen  195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK  223 (326)
T ss_dssp             SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred             cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence            3211 111248999999888764 544553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02793 Probable polygalacturonase

Probab=97.93  E-value=0.0024  Score=64.68  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=88.5

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      |++.+++||.|++|+++....+   .+.+. .+++|.|++.++..     ..||. |+ ..+++|+|++|.|...+-+..
T Consensus       180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIa  253 (443)
T PLN02793        180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCIS  253 (443)
T ss_pred             EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEE
Confidence            5667899999999999986533   36676 78999999999963     57886 88 468999999999999888877


Q ss_pred             ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-ccCeEEEEcceEeccccceeee--ccC-----ceEEEEce
Q 020121          172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA--SVE-----SQIYSQCN  236 (331)
Q Consensus       172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~--~~~-----a~v~~e~N  236 (331)
                      +....       .+|++.++.+.....       +.... ..-.+.+.|+.+.+.. +++..  ..+     .+|.+++-
T Consensus       254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni  325 (443)
T PLN02793        254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI  325 (443)
T ss_pred             ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence            75432       157777766532211       11100 0114678888777653 34321  111     24555555


Q ss_pred             EEecCCcceee
Q 020121          237 IYEAGQKKRTF  247 (331)
Q Consensus       237 ~f~~~~~~~~~  247 (331)
                      ..++...+..+
T Consensus       326 ~m~nv~~pI~I  336 (443)
T PLN02793        326 FMENVSNPIII  336 (443)
T ss_pred             EEecCCceEEE
Confidence            55555444333

>PLN03003 Probable polygalacturonase At3g15720

Probab=97.84  E-value=0.0013  Score=66.72  Aligned_cols=124  Identities=19%  Similarity=0.338  Sum_probs=86.0

Q ss_pred             cceeeeeeccceEEecCc-------------EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec----
Q 020121           79 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----  141 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~g-------------i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~----  141 (331)
                      .+++|.|.|   +|.|.|             |++.+++|+.|++|+++....   =.|.+. .+++|.|++..+..    
T Consensus       113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~s  185 (456)
T PLN03003        113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESS  185 (456)
T ss_pred             cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCC
Confidence            467777753   566543             677889999999999997643   346776 78999999999864    


Q ss_pred             -CCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCC-------CCcc-cccCeEEEEc
Q 020121          142 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYN  212 (331)
Q Consensus       142 -~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr-~r~G~~hv~N  212 (331)
                       ..||. |+ ..+++|+|.+|.|...+-+.-+.+...       +|++.++.+.....       +... -..-.+++.|
T Consensus       186 pNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n  256 (456)
T PLN03003        186 PNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN  256 (456)
T ss_pred             CCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence             57886 88 468999999999998888887765421       56666665532211       1000 0012467888


Q ss_pred             ceEecc
Q 020121          213 NYTRNW  218 (331)
Q Consensus       213 N~~~n~  218 (331)
                      +.+.+.
T Consensus       257 ~~~~~T  262 (456)
T PLN03003        257 CNFRGT  262 (456)
T ss_pred             eEEECC
Confidence            887764

>PLN03010 polygalacturonase

Probab=97.82  E-value=0.0018  Score=64.96  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec--------CCceEEEeccEEeccCc
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR--------QSTDITVSRCYFTQHDK  168 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~--------~s~~vTiS~n~f~~h~k  168 (331)
                      |-+..++||.|+|-.|+.    .+|+|.+..+++++.|..+....+. | +.+..        ...+|+|++|.|.+...
T Consensus       210 iDi~~s~nV~I~n~~I~~----gDDcIaiksgs~ni~I~~~~C~~gH-G-isIGS~g~~~~~~~V~nV~v~n~~i~~t~~  283 (409)
T PLN03010        210 IDISYSTNINIFDSTIQT----GDDCIAINSGSSNINITQINCGPGH-G-ISVGSLGADGANAKVSDVHVTHCTFNQTTN  283 (409)
T ss_pred             eeeeccceEEEEeeEEec----CCCeEEecCCCCcEEEEEEEeECcC-C-EEEccCCCCCCCCeeEEEEEEeeEEeCCCc
Confidence            444444555555555553    3566666545556666555543221 2 12211        13466666666666554


Q ss_pred             eeee
Q 020121          169 TMLI  172 (331)
Q Consensus       169 ~~li  172 (331)
                      +.-|
T Consensus       284 GirI  287 (409)
T PLN03010        284 GARI  287 (409)
T ss_pred             ceEE
Confidence            4333

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=97.77  E-value=0.0004  Score=58.21  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCc-eeeecC
Q 020121           96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA  174 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k-~~liG~  174 (331)
                      +|.+...+++.|++-+|+.    ...+|.+. ...++.|+.|.|++...+ +.+. .+..++|++|.|.+... +..+..
T Consensus        25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred             EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence            5777767777888888886    45778886 567888888888887733 3453 67888888888887654 444432


Q ss_pred             CCCCCCCcceEEEEeceeecCCCCCCccccc-C--eEEEEcceEeccccceeeeccCce-EEEEceEE
Q 020121          175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY  238 (331)
Q Consensus       175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~~~~~~~~a~-v~~e~N~f  238 (331)
                             ....+++.+|.|.++....=.+.. .  .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus        98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~  158 (158)
T PF13229_consen   98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF  158 (158)
T ss_dssp             -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred             -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence                   011477888888877743333322 2  567788888877777776555444 66677766

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.57  E-value=0.0031  Score=57.90  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      ||.+..+++++|++-.|+..    ..||.+. .+.+..|..|.|+....|+ .+. .+...+|++|.|.+...+..+-.+
T Consensus        59 GI~~~~s~~~~i~~n~i~~n----~~Gi~l~-~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~I~~N~i~~~~~GI~l~~s  131 (236)
T PF05048_consen   59 GIHLMGSSNNTIENNTISNN----GYGIYLM-GSSNNTISNNTISNNGYGI-YLY-GSSNNTISNNTISNNGYGIYLSSS  131 (236)
T ss_pred             EEEEEccCCCEEEeEEEEcc----CCCEEEE-cCCCcEEECCEecCCCceE-EEe-eCCceEEECcEEeCCCEEEEEEeC
Confidence            46666666666666666643    2667765 4444577777777766654 342 456677777777755555555433


Q ss_pred             CCCCCCcceEEEEeceeecCCCCCCcc-ccc-CeEEEEcceE
Q 020121          176 PSHVGDRCIRVTIHHCLFDGTRQRHPR-LRF-GKVHLYNNYT  215 (331)
Q Consensus       176 ~~~~~d~~~~vT~hhN~f~~~~~R~Pr-~r~-G~~hv~NN~~  215 (331)
                      .        +.++.+|.|.++..---. +.. ....+++|.|
T Consensus       132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f  165 (236)
T PF05048_consen  132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF  165 (236)
T ss_pred             C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence            1        356667777666333333 221 2456777766

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=97.57  E-value=0.0075  Score=59.69  Aligned_cols=184  Identities=17%  Similarity=0.302  Sum_probs=129.8

Q ss_pred             ceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeCceeEeccceeeeeeccceEEecC---cEEEe---------e
Q 020121           34 PVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---GLRLK---------E  101 (331)
Q Consensus        34 ~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~G~---gi~i~---------~  101 (331)
                      ++|.+.=.+|     |.++|.+-..  |.++=+-+-.+.++|.|++..+|+|+|+.+.|.+.   +|.+.         +
T Consensus        47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g  119 (386)
T PF01696_consen   47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG  119 (386)
T ss_pred             EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence            3555555666     9999987541  23333444566788999999999999998888643   25442         3


Q ss_pred             eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCC
Q 020121          102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD  181 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d  181 (331)
                      =.+|.+.|++|....  ..-|+-+. ...++.|..|.|....--.++..   ....|..|.|..-+|+.....       
T Consensus       120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~-------  186 (386)
T PF01696_consen  120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG-------  186 (386)
T ss_pred             eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence            579999999999753  23556665 67899999999998887777775   467899999998888775322       


Q ss_pred             cceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeeccCceEEEEceEEecCCc
Q 020121          182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQK  243 (331)
Q Consensus       182 ~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~  243 (331)
                       ..++++.+|.|..|.-=-  +..|..++.+|...+.. -.+-....+.+  .+|.|.....
T Consensus       187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~-Cf~l~~g~g~i--~~N~v~~~~~  242 (386)
T PF01696_consen  187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG-CFVLMKGTGSI--KHNMVCGPND  242 (386)
T ss_pred             -cceEEeeheeeeheEEEE--EecCCeEEecceecccc-eEEEEcccEEE--eccEEeCCCC
Confidence             236788999999876543  44588899999888764 22333333344  6888876543

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.56  E-value=0.0019  Score=59.22  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecC
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  174 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~  174 (331)
                      .++.+..+.++.|++.+|+..    ..||.+. .++++-|..|.++....|+ .+. .+.+.+|++|.|.+...+.++..
T Consensus        36 ~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~Gi-~l~-~s~~~~I~~N~i~~n~~GI~l~~  108 (236)
T PF05048_consen   36 DGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYGI-YLM-GSSNNTISNNTISNNGYGIYLYG  108 (236)
T ss_pred             CEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCCE-EEE-cCCCcEEECCEecCCCceEEEee
Confidence            356777799999999999964    5789887 7788889999999988886 453 34455999999998777766644


Q ss_pred             CCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccceee-eccCceEEEEceEEec
Q 020121          175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVC-ASVESQIYSQCNIYEA  240 (331)
Q Consensus       175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~-~~~~a~v~~e~N~f~~  240 (331)
                      +.        ..++.+|.|. ....-=.+.. ....+.+|.+.+...+++. ........+.+|.|.+
T Consensus       109 s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N  167 (236)
T PF05048_consen  109 SS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN  167 (236)
T ss_pred             CC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence            32        3578888887 3333333332 4678899998887668887 5555566677999943

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=97.51  E-value=0.0015  Score=65.61  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             cceeeeee-----ccceEEecCcEEEeeeccEEEeeeEEecCCC-------------------CCCCceEEcCCCceEEE
Q 020121           79 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-------------------HDVDGIQIKPNSRHIWI  134 (331)
Q Consensus        79 sn~TI~G~-----g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~-------------------~~~D~I~i~~~~~nVwI  134 (331)
                      +++||.|.     |....-...+|.+++|+++.|++.+|++...                   ....+|.+. .++++.|
T Consensus       115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V  193 (455)
T TIGR03808       115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV  193 (455)
T ss_pred             CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence            45555554     4332223345778889999999999997520                   012345554 5668888


Q ss_pred             eeeeeecCCCCeeeeec-----------------------------------CCceEEEeccEEeccCceeeecCCCCCC
Q 020121          135 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIGADPSHV  179 (331)
Q Consensus       135 DHcs~s~~~Dg~~di~~-----------------------------------~s~~vTiS~n~f~~h~k~~liG~~~~~~  179 (331)
                      .+|+++...|..+.+.+                                   .+.+++|+.|.++++.+..+.+.+.++.
T Consensus       194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~  273 (455)
T TIGR03808       194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNI  273 (455)
T ss_pred             ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCc
Confidence            88888887775443321                                   2457888888888777444333221111


Q ss_pred             -------CC-c--ceEEEE-ec-eeecCCCCCCcccc-----c---CeE-EEEcceEeccc-----------cceeeecc
Q 020121          180 -------GD-R--CIRVTI-HH-CLFDGTRQRHPRLR-----F---GKV-HLYNNYTRNWG-----------IYAVCASV  227 (331)
Q Consensus       180 -------~d-~--~~~vT~-hh-N~f~~~~~R~Pr~r-----~---G~~-hv~NN~~~n~~-----------~~~~~~~~  227 (331)
                             .+ |  .++.-| |+ +.+.++....-...     |   |.. .+-.|++.|..           ..+++...
T Consensus       274 ~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~  353 (455)
T TIGR03808       274 QITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYV  353 (455)
T ss_pred             EEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEE
Confidence                   11 1  123233 22 44544444443332     1   332 45556555521           23455556


Q ss_pred             CceEEEEceEEecCCc
Q 020121          228 ESQIYSQCNIYEAGQK  243 (331)
Q Consensus       228 ~a~v~~e~N~f~~~~~  243 (331)
                      ||.-.+.+|+-|+.|.
T Consensus       354 ead~~~~~n~~e~ap~  369 (455)
T TIGR03808       354 EADTAVTGNVVENAPS  369 (455)
T ss_pred             EecceeccceecCCcc
Confidence            6666666777776654

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN02197 pectinesterase

Probab=97.49  E-value=0.019  Score=60.04  Aligned_cols=102  Identities=21%  Similarity=0.370  Sum_probs=67.0

Q ss_pred             CCCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-c-------Cc------
Q 020121           41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------KG------   96 (331)
Q Consensus        41 l~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G-------~g------   96 (331)
                      .+.+|.|   |+++||++    ...|+||+=..|+-+  +.+.|.   +|+|+.|.|.+-+|. +       .|      
T Consensus       279 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~S  356 (588)
T PLN02197        279 VAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLS  356 (588)
T ss_pred             EcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccce
Confidence            4555654   88999965    223554443456644  556664   689999987644432 1       11      


Q ss_pred             --EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           97 --LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        97 --i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                        +.+ .+++++.|||+|++..+   +..-|+.+  .+++..+.+|.|....|-++
T Consensus       357 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~GyQDTLy  409 (588)
T PLN02197        357 GTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRV--NGDRAVIFNCRFDGYQDTLY  409 (588)
T ss_pred             eEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEe--cCCcEEEEEeEEEecCcceE
Confidence              333 37999999999998543   23445555  47889999999987766664

>PLN02155 polygalacturonase

Probab=97.47  E-value=0.0049  Score=61.58  Aligned_cols=114  Identities=13%  Similarity=0.159  Sum_probs=80.0

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      |++.+++||.|++|+++....   =.|.+. .+++|.|+|..+..     ..||. |+ ..+++|+|++|.|...+-+..
T Consensus       148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIa  221 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVA  221 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEE
Confidence            677789999999999997643   346665 78999999999953     46886 88 468999999999998888887


Q ss_pred             ecCCCCCCCCcceEEEEeceeecCC-------CCCCcc-cccCeEEEEcceEeccccceee
Q 020121          172 IGADPSHVGDRCIRVTIHHCLFDGT-------RQRHPR-LRFGKVHLYNNYTRNWGIYAVC  224 (331)
Q Consensus       172 iG~~~~~~~d~~~~vT~hhN~f~~~-------~~R~Pr-~r~G~~hv~NN~~~n~~~~~~~  224 (331)
                      ++...       -+|++.++.+...       ..+.+. -..-.+.+.|+.+.+.. +++.
T Consensus       222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~Gir  274 (394)
T PLN02155        222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVR  274 (394)
T ss_pred             cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEE
Confidence            76542       1577766655431       112221 11125678888887753 4543

>PLN02480 Probable pectinesterase

Probab=97.47  E-value=0.022  Score=55.93  Aligned_cols=113  Identities=11%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             CchHHHHhhcCC----CeEEEEEeeeEEEeCceeEe---ccceeeeeeccc-eEEecC----------cEEEeeeccEEE
Q 020121           46 PGSLREGCRRRE----PLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLKECEHVII  107 (331)
Q Consensus        46 ~GsLr~ai~~~~----pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g-~~i~G~----------gi~i~~~~NVII  107 (331)
                      .-|+++||++..    .+++++=..|+-+  +.+.|   ++++||.|.+.. ..|.+.          .|.+. ++++++
T Consensus        60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a  136 (343)
T PLN02480         60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVA  136 (343)
T ss_pred             cccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEE
Confidence            358999997632    3444433456555  56777   367999998742 344432          25555 899999


Q ss_pred             eeeEEecCCC------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121          108 CNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  164 (331)
Q Consensus       108 rnL~i~~g~~------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~  164 (331)
                      +||+|++...      ...-|+-+.-.++++.+.+|.|.-..|-|++-.   ..--..+|.|.
T Consensus       137 ~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~C~Ie  196 (343)
T PLN02480        137 FGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK---GRHYYHSCYIQ  196 (343)
T ss_pred             EeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC---CCEEEEeCEEE
Confidence            9999998631      123455554357899999999988888776431   23333455544

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.40  E-value=0.0087  Score=58.16  Aligned_cols=88  Identities=20%  Similarity=0.513  Sum_probs=68.0

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      |++.+++|+.|++|+++....|   .+.+. .+++|+|+|.++..     ..||+ |+. .+.+|+|.+|.|...+-+.-
T Consensus        95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDGi-d~~-~s~nv~I~n~~i~~gDD~Ia  168 (326)
T PF00295_consen   95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDGI-DID-SSKNVTIENCFIDNGDDCIA  168 (326)
T ss_dssp             EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--SE-EEE-SEEEEEEESEEEESSSESEE
T ss_pred             eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcceE-EEE-eeeEEEEEEeecccccCccc
Confidence            7888899999999999987544   47776 79999999999863     46886 884 68999999999998877776


Q ss_pred             ecCCCCCCCCcceEEEEeceeecCCC
Q 020121          172 IGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       172 iG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      +.+...       +|++.++++.+..
T Consensus       169 iks~~~-------ni~v~n~~~~~gh  187 (326)
T PF00295_consen  169 IKSGSG-------NILVENCTCSGGH  187 (326)
T ss_dssp             ESSEEC-------EEEEESEEEESSS
T ss_pred             cccccc-------ceEEEeEEEeccc
Confidence            654321       6888888886543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.34  E-value=0.011  Score=59.22  Aligned_cols=137  Identities=12%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      |.+.+++||.|++|+|+....|   .|.+. .+++|.|++.++..     ..||+ |+ ..+++|+|.+|.|...+-+.-
T Consensus       158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIa  231 (404)
T PLN02188        158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCIS  231 (404)
T ss_pred             EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEE
Confidence            4666899999999999986533   46776 78999999999864     57886 88 468999999999999888888


Q ss_pred             ecCCCCCCCCcceEEEEeceeecCCCC-------CCcc-cccCeEEEEcceEeccccceeeec------c---CceEEEE
Q 020121          172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYNNYTRNWGIYAVCAS------V---ESQIYSQ  234 (331)
Q Consensus       172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~~~~~~------~---~a~v~~e  234 (331)
                      +.+...       +|++-++...+...       +... -....+.+.|+.+.+.. +++..-      .   -.+|.+|
T Consensus       232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~  303 (404)
T PLN02188        232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE  303 (404)
T ss_pred             EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence            864321       56776665533211       0000 01124678888887753 344321      1   1256667


Q ss_pred             ceEEecCCcceee
Q 020121          235 CNIYEAGQKKRTF  247 (331)
Q Consensus       235 ~N~f~~~~~~~~~  247 (331)
                      +-.+++...+..+
T Consensus       304 ni~m~~v~~pI~i  316 (404)
T PLN02188        304 NIVMNNVTNPIII  316 (404)
T ss_pred             eEEecCccceEEE
Confidence            7677666555444

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.022  Score=55.39  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             ceeEeccceeeeeeccceEEecCc----EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCC
Q 020121           73 SYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDG  145 (331)
Q Consensus        73 ~~l~v~sn~TI~G~g~g~~i~G~g----i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg  145 (331)
                      +.+.|..-+|+.|. .++++.|.+    +++. +.++|||.|++|+...   .-+-+|-+....+.-.|.||++.....|
T Consensus        45 g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~G  122 (408)
T COG3420          45 GNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFG  122 (408)
T ss_pred             ccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceE
Confidence            56788888899897 456777654    6775 9999999999997542   2345677765778888999999888888


Q ss_pred             eeeeecCCceEEEeccEEecc---------CceeeecCCC--------CCCCCcceEEEEeceeecCCCCCCccc
Q 020121          146 LIDITRQSTDITVSRCYFTQH---------DKTMLIGADP--------SHVGDRCIRVTIHHCLFDGTRQRHPRL  203 (331)
Q Consensus       146 ~~di~~~s~~vTiS~n~f~~h---------~k~~liG~~~--------~~~~d~~~~vT~hhN~f~~~~~R~Pr~  203 (331)
                      +. + +++.++-|--|.+..-         .-..+|..++        ++..|.-.-=|-|||.|.++..|.-|+
T Consensus       123 i~-l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~~Ry  195 (408)
T COG3420         123 IY-L-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRDLRY  195 (408)
T ss_pred             EE-E-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhheee
Confidence            74 4 4677888888877531         1123333332        222343333345777777777776554

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=97.14  E-value=0.033  Score=52.22  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             chHHHHhhcCCCeEEEEEeeeEEEeC----ceeEeccceeeeee----cc----------ceEEecCc-------EEEee
Q 020121           47 GSLREGCRRREPLWIVFEVSGTIHLS----SYLSVSSYKTIDGR----GQ----------RIKLTGKG-------LRLKE  101 (331)
Q Consensus        47 GsLr~ai~~~~pr~Ivf~v~G~I~l~----~~l~v~sn~TI~G~----g~----------g~~i~G~g-------i~i~~  101 (331)
                      -+|.+|++...|..+|.=-.|+-.-.    -+|.+.+.++|.|.    |.          +..|.|.+       +.|..
T Consensus        16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~   95 (246)
T PF07602_consen   16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL   95 (246)
T ss_pred             HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence            46888998877766443234555433    25777888888885    22          22344433       44555


Q ss_pred             eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC-CCCeeeee----cCCceEEEeccEEeccCce
Q 020121          102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDIT----RQSTDITVSRCYFTQHDKT  169 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~-~Dg~~di~----~~s~~vTiS~n~f~~h~k~  169 (331)
                      +++..|+.++|+......+-||.|+ ++ +.-|.+|+|... .+|.+...    ....+++|+.|.+.....+
T Consensus        96 ~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G  166 (246)
T PF07602_consen   96 ANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTG  166 (246)
T ss_pred             cCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcC
Confidence            7888999999997743356688886 44 677899999985 56653221    1234677777776654433

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>smart00656 Amb_all Amb_all domain

Probab=97.09  E-value=0.016  Score=52.19  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             cceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC----C-CCCCc-eEEcCCCceEEEeeeeeecCCCCeeeeecC
Q 020121           79 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR----G-HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ  152 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~----~-~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~  152 (331)
                      .|++|.+........+.+|.+.+++||.|-|.+|..+.    . ...|+ +.+..++.+|=|-.|.|....-++|-...+
T Consensus        45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d  124 (190)
T smart00656       45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD  124 (190)
T ss_pred             eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence            37777775332223456788888999999999999752    1 11344 455546788989999987655544433222


Q ss_pred             Cc------eEEEeccEEeccC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEecc
Q 020121          153 ST------DITVSRCYFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW  218 (331)
Q Consensus       153 s~------~vTiS~n~f~~h~-k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~  218 (331)
                      .+      .||+.+|+|.+.. ..=++.         .-.+-+.+|+|.+.....-..+. +.+.+.||||++.
T Consensus       125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r---------~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      125 SDTDDGKMRVTIAHNYFGNLRQRAPRVR---------FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             CccccccceEEEECcEEcCcccCCCccc---------CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence            22      6999999998532 111111         11466788999887654333333 5789999999864

>PLN02176 putative pectinesterase

Probab=97.09  E-value=0.013  Score=57.46  Aligned_cols=118  Identities=13%  Similarity=0.231  Sum_probs=73.8

Q ss_pred             CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe--cC--------cEEEee
Q 020121           42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE  101 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--G~--------gi~i~~  101 (331)
                      +.+|.|   |+++||++-    ..+++|+-..|+-+  +.+.|.   +++||.|.|..-+|.  +.        .+.+. 
T Consensus        44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~-  120 (340)
T PLN02176         44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSY-  120 (340)
T ss_pred             CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEE-
Confidence            445544   899999652    23444443456655  557773   689999997644443  11        24554 


Q ss_pred             eccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          102 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      +++++.+||+|++...       ...-|+-+.-.++++-+.+|.|.-..|-|++-   ...--..+|.|..
T Consensus       121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG  188 (340)
T PLN02176        121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG  188 (340)
T ss_pred             CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence            8999999999997531       11233333324688999999999888887653   2234445565553

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=96.96  E-value=0.089  Score=54.71  Aligned_cols=101  Identities=21%  Similarity=0.464  Sum_probs=67.2

Q ss_pred             CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121           42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i   97 (331)
                      +.+|.|   ++++||++    ...|+||+=..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.     +        +
T Consensus       235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~  312 (541)
T PLN02416        235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL  312 (541)
T ss_pred             CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence            445655   78889964    334665554567654  556663   6899999986443 4432     1        4


Q ss_pred             EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      .+. +++++.|||+|++..+   +..-|+.+  .++++.+-+|.|....|-++
T Consensus       313 ~v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy  362 (541)
T PLN02416        313 AVS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLY  362 (541)
T ss_pred             EEE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhc
Confidence            444 8999999999997542   23455555  46789999999986655553

>PLN02432 putative pectinesterase

Probab=96.92  E-value=0.14  Score=49.36  Aligned_cols=114  Identities=13%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEEe-c---C------cEEEeeeccEEEe
Q 020121           46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G---K------GLRLKECEHVIIC  108 (331)
Q Consensus        46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-G---~------gi~i~~~~NVIIr  108 (331)
                      .-|+++||++-    ..+++++=..|+-+  +.|.|   .+++||.|.+..-++. .   .      .+.+. ++|++.+
T Consensus        23 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~-a~~f~a~   99 (293)
T PLN02432         23 FRKIQDAIDAVPSNNSQLVFIWVKPGIYR--EKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVL-ASDFVGR   99 (293)
T ss_pred             ccCHHHHHhhccccCCceEEEEEeCceeE--EEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEE-CCCeEEE
Confidence            45788999652    22333433456543  55667   3799999997544442 1   1      14444 8999999


Q ss_pred             eeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          109 NLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       109 nL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      ||+|++..+...-++.+.-.++++.+.+|.|.-..|-|++-   ...--..+|.|..
T Consensus       100 nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G  153 (293)
T PLN02432        100 FLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEG  153 (293)
T ss_pred             eeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEe
Confidence            99999764323334444334788999999999888887642   2234445666653

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=96.78  E-value=0.14  Score=52.96  Aligned_cols=102  Identities=22%  Similarity=0.409  Sum_probs=66.9

Q ss_pred             CCCCCc---hHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------
Q 020121           42 SDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------   96 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------   96 (331)
                      +.+|.|   ++++||++.     ..|++++=..|+-+  +.+.|.   +|+||+|.|.+-+| .+.     +        
T Consensus       230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT  307 (529)
T PLN02170        230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT  307 (529)
T ss_pred             cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence            445544   788999742     23555544456644  556663   69999999865444 321     1        


Q ss_pred             EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121           97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID  148 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d  148 (331)
                      +.+ .+++++.|||+|++..+   ...-|+.+  .++++.+.+|.|....|-+++
T Consensus       308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv--~gDr~~fy~C~f~GyQDTLy~  359 (529)
T PLN02170        308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRV--GSDKSVVYRCSVEGYQDSLYT  359 (529)
T ss_pred             EEE-EcCCeEEEeeEEEecCCCCCCceEEEEe--cCCcEEEEeeeEeccCCccee
Confidence            334 38999999999998643   23345555  467899999999876666543

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=96.70  E-value=0.2  Score=52.16  Aligned_cols=101  Identities=20%  Similarity=0.445  Sum_probs=66.2

Q ss_pred             CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------c------E
Q 020121           42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------G------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------g------i   97 (331)
                      +.+|.|   ++++||++    ...|.||+=..|+-+  +.+.|.   +|+||+|.|.+-+| .+.       +      +
T Consensus       241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~  318 (548)
T PLN02301        241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV  318 (548)
T ss_pred             CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence            445655   88889965    223555554567644  557774   69999999865444 321       1      2


Q ss_pred             EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      .+ .+++++.|||+|++..+   +..-|+.+  .+++..+.+|.|....|-++
T Consensus       319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~~~G~QDTLy  368 (548)
T PLN02301        319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRV--SADQAVINRCRIDAYQDTLY  368 (548)
T ss_pred             EE-ECCceEEEeeEEEECCCCCCCceEEEEe--cCCcEEEEeeeeeeccccce
Confidence            33 37999999999997543   23344555  46889999999986655553

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=96.65  E-value=0.24  Score=52.72  Aligned_cols=196  Identities=18%  Similarity=0.362  Sum_probs=109.4

Q ss_pred             CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------E
Q 020121           42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i   97 (331)
                      +.+|.|   ++++||++    ...|.||+=..|+-+  +.+.|.   .|+|++|.|.+-+| .+.     |        +
T Consensus       255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~  332 (670)
T PLN02217        255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV  332 (670)
T ss_pred             CCCCCCCccCHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence            455655   88999975    223544443456543  456774   58899999865444 322     1        3


Q ss_pred             EEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceEEEe
Q 020121           98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS  159 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~vTiS  159 (331)
                      .+ .+++++.|||+|++..+. ..-++-+.-.+++..+.+|.|....|-|                 +|+--+....-++
T Consensus       333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  411 (670)
T PLN02217        333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ  411 (670)
T ss_pred             EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence            44 379999999999976431 1233444334788999999997554444                 3333344456788


Q ss_pred             ccEEeccC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------cccccCeEEEEcceEec---
Q 020121          160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN---  217 (331)
Q Consensus       160 ~n~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n---  217 (331)
                      +|.|....     ++.+-  |..+   .+...-+.||+|.+.....-.            |--.+..+-+.|.++.+   
T Consensus       412 ~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~  488 (670)
T PLN02217        412 NCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVP  488 (670)
T ss_pred             ccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEc
Confidence            88886431     12221  1111   111235789999886643211            11123456666776653   


Q ss_pred             ---cccceeeeccCceEEEEceEEecCCc
Q 020121          218 ---WGIYAVCASVESQIYSQCNIYEAGQK  243 (331)
Q Consensus       218 ---~~~~~~~~~~~a~v~~e~N~f~~~~~  243 (331)
                         |..+.-....+.-.+.|.+-+.+|..
T Consensus       489 P~GW~~W~~~~~~~t~~yaEY~n~GpGa~  517 (670)
T PLN02217        489 PEGWQPWLGDFGLNTLFYSEVQNTGPGAA  517 (670)
T ss_pred             CcccCccCCCCCCCceEEEEeccccCCCC
Confidence               32221122233445677777776653

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=96.64  E-value=0.021  Score=59.09  Aligned_cols=100  Identities=22%  Similarity=0.530  Sum_probs=69.3

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec-----------CCceEEEeccEEec
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR-----------QSTDITVSRCYFTQ  165 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~-----------~s~~vTiS~n~f~~  165 (331)
                      +....++|+.++||+|........|||.++ .|+||.|+.|.|+-+.|-. -++.           .+.+|+|++|+|..
T Consensus       264 ~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~I-~iksg~~~~~~~~~~~~~~i~i~~c~~~~  341 (542)
T COG5434         264 VHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDCI-AIKSGAGLDGKKGYGPSRNIVIRNCYFSS  341 (542)
T ss_pred             EeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCceE-EeecccCCcccccccccccEEEecceecc
Confidence            555679999999999997544467999997 8999999999998755543 3332           24679999999984


Q ss_pred             cCceeeecCCCCCCCCcc-eEEEEeceeecCCCCCCccc
Q 020121          166 HDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRL  203 (331)
Q Consensus       166 h~k~~liG~~~~~~~d~~-~~vT~hhN~f~~~~~R~Pr~  203 (331)
                      -.-+..+|+.-    +++ .+|++-.|.|.+ ..|-=|+
T Consensus       342 ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi  375 (542)
T COG5434         342 GHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI  375 (542)
T ss_pred             cccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence            33334445431    122 367777777776 4444444

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=96.59  E-value=0.18  Score=52.55  Aligned_cols=121  Identities=16%  Similarity=0.302  Sum_probs=75.2

Q ss_pred             CCCCCC---chHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-c------Cc------
Q 020121           41 LSDDGP---GSLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------KG------   96 (331)
Q Consensus        41 l~d~g~---GsLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G------~g------   96 (331)
                      .+.+|.   -|.++||++.     ..|.||+=..|+-+  +.+.|.   .|+||+|.|.+-|+. +      .|      
T Consensus       245 Va~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~s  322 (553)
T PLN02708        245 VCKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNT  322 (553)
T ss_pred             ECCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccce
Confidence            344554   4788998642     23555554567655  456663   699999997654443 2      12      


Q ss_pred             --EEEeeeccEEEeeeEEecCCCCC-CCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceE
Q 020121           97 --LRLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDI  156 (331)
Q Consensus        97 --i~i~~~~NVIIrnL~i~~g~~~~-~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~v  156 (331)
                        +.+ .+++++.|||+|++..+.+ .-|+-+...++.+.+.+|.|....|-+                 +|+--+...+
T Consensus       323 aT~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~a  401 (553)
T PLN02708        323 ATVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAA  401 (553)
T ss_pred             EEEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceE
Confidence              334 3789999999999864321 234444435788999999997655444                 3333344456


Q ss_pred             EEeccEEe
Q 020121          157 TVSRCYFT  164 (331)
Q Consensus       157 TiS~n~f~  164 (331)
                      -+++|.|.
T Consensus       402 vfq~c~i~  409 (553)
T PLN02708        402 VFQDCAIL  409 (553)
T ss_pred             EEEccEEE
Confidence            67777775

>PLN02682 pectinesterase family protein

Probab=96.57  E-value=0.29  Score=48.53  Aligned_cols=111  Identities=14%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceE-Eec-----------C--------cEE
Q 020121           46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIK-LTG-----------K--------GLR   98 (331)
Q Consensus        46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~-i~G-----------~--------gi~   98 (331)
                      .-|+++||++-    ..|++|+=..|+-+  +.+.|   .+++||.|.|..-+ |..           .        .+.
T Consensus        82 f~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~  159 (369)
T PLN02682         82 FTTIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA  159 (369)
T ss_pred             ccCHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE
Confidence            34899999752    22443432346543  55777   37999999975433 321           0        144


Q ss_pred             EeeeccEEEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121           99 LKECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  164 (331)
Q Consensus        99 i~~~~NVIIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~  164 (331)
                      + .+++++.+||+|++...        ...-|+.+  .++++.+.+|.|.-..|-|++-   ...--..+|.|.
T Consensus       160 v-~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v--~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  227 (369)
T PLN02682        160 V-NSPYFIAKNITFKNTAPVPPPGALGKQAVALRI--SADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE  227 (369)
T ss_pred             E-ECCCeEEEeeEEEcccccCCCCCCcccEEEEEe--cCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence            4 38899999999997531        12334444  4788999999998887777643   123334455554

>PLN02497 probable pectinesterase

Probab=96.55  E-value=0.35  Score=47.34  Aligned_cols=112  Identities=11%  Similarity=0.228  Sum_probs=69.0

Q ss_pred             chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC---------cEEEeeeccEEEee
Q 020121           47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK---------GLRLKECEHVIICN  109 (331)
Q Consensus        47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~---------gi~i~~~~NVIIrn  109 (331)
                      -|+++||++    ...|++++=..|+-+  +.+.|.   +++||.|+|..- .|...         .+.+. +++++.+|
T Consensus        45 ~TIq~AIdavP~~~~~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~-a~~f~a~n  121 (331)
T PLN02497         45 TTIQSAIDSVPSNNKHWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTL-ADNTVVKS  121 (331)
T ss_pred             cCHHHHHhhccccCCceEEEEEeCcEEE--EEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEe-cCCeEEEc
Confidence            478999865    223444433456543  556673   799999997533 33311         14444 89999999


Q ss_pred             eEEecCCCC--------CCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121          110 LEFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  164 (331)
Q Consensus       110 L~i~~g~~~--------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~  164 (331)
                      |+|++....        ..-++-+.-.++++-+.+|.|.-..|-|++-   ...--..+|.|.
T Consensus       122 lT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  181 (331)
T PLN02497        122 ITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ  181 (331)
T ss_pred             cEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence            999975321        1124444334788999999999888887643   223334555554

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=96.49  E-value=0.38  Score=49.81  Aligned_cols=101  Identities=20%  Similarity=0.407  Sum_probs=65.1

Q ss_pred             CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121           42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i   97 (331)
                      +.+|.|   ++++||.+-    ..|++|+=..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.     |        +
T Consensus       211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~  288 (520)
T PLN02201        211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF  288 (520)
T ss_pred             cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence            345544   889999652    23444443456554  556674   5899999975433 3321     1        3


Q ss_pred             EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      .+ .+++++.|||+|++..+   ...-|+.+  .++...+.+|.|....|-++
T Consensus       289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~G~QDTLy  338 (520)
T PLN02201        289 AV-SGRGFIARDITFQNTAGPEKHQAVALRS--DSDLSVFYRCAMRGYQDTLY  338 (520)
T ss_pred             EE-ECCCeEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeeeeccCCeeE
Confidence            34 37999999999997643   23344555  46789999999987666654

>PLN02665 pectinesterase family protein

Probab=96.48  E-value=0.46  Score=47.10  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC------------cEEEeeeccE
Q 020121           46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK------------GLRLKECEHV  105 (331)
Q Consensus        46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~------------gi~i~~~~NV  105 (331)
                      .-|+++||++-    ..|+|++=..|+-+  +.+.|.   +++|+.|.+..- .|...            .+.+ .++++
T Consensus        80 f~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F  156 (366)
T PLN02665         80 FKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYF  156 (366)
T ss_pred             ccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCe
Confidence            34899999752    23554543457544  567773   689999996533 33321            1344 48999


Q ss_pred             EEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeee
Q 020121          106 IICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI  149 (331)
Q Consensus       106 IIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di  149 (331)
                      +.+||+|++...        ...-|+.+  .++++.+.+|.|.-..|-|++-
T Consensus       157 ~a~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~~  206 (366)
T PLN02665        157 MAANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCDD  206 (366)
T ss_pred             EEEeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEeC
Confidence            999999997532        12344555  4678999999999888877654

>PLN02773 pectinesterase

Probab=96.47  E-value=0.43  Score=46.45  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC----------------------
Q 020121           46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK----------------------   95 (331)
Q Consensus        46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~----------------------   95 (331)
                      .-|+++||++-    ..+++||=..|+-+  +.|.|.   +++||.|++..-+ |...                      
T Consensus        17 f~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~S   94 (317)
T PLN02773         17 YCTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGC   94 (317)
T ss_pred             ccCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCc
Confidence            45789998652    22444443456544  567773   5799999875333 3211                      


Q ss_pred             -cEEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121           96 -GLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID  148 (331)
Q Consensus        96 -gi~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d  148 (331)
                       .+.+ .++|++.+||+|++...   ...-|+.+  .++++-+.+|.|.-..|-|+.
T Consensus        95 aTv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v--~gDr~~f~~c~~~G~QDTL~~  148 (317)
T PLN02773         95 GTVIV-EGEDFIAENITFENSAPEGSGQAVAIRV--TADRCAFYNCRFLGWQDTLYL  148 (317)
T ss_pred             eEEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEe--cCccEEEEccEeecccceeEe
Confidence             1334 48999999999997632   12344455  468899999999877777653

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=96.44  E-value=0.32  Score=50.92  Aligned_cols=121  Identities=17%  Similarity=0.426  Sum_probs=74.0

Q ss_pred             CCCCCc---hHHHHhhcC-------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC------------
Q 020121           42 SDDGPG---SLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK------------   95 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~-------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~------------   95 (331)
                      +.+|.|   +.++||++-       ..|+||+-..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.            
T Consensus       255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S  332 (566)
T PLN02713        255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS  332 (566)
T ss_pred             CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence            445654   788899652       12444443456654  557773   6899999975433 3322            


Q ss_pred             -cEEEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceE
Q 020121           96 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI  156 (331)
Q Consensus        96 -gi~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~v  156 (331)
                       .+.+. +++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-++                 |+--+.-.+
T Consensus       333 aT~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a  411 (566)
T PLN02713        333 ATFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV  411 (566)
T ss_pred             eeEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence             14443 79999999999985421 12334343357888999999976655553                 222233446


Q ss_pred             EEeccEEec
Q 020121          157 TVSRCYFTQ  165 (331)
Q Consensus       157 TiS~n~f~~  165 (331)
                      -+++|.|..
T Consensus       412 vfq~C~i~~  420 (566)
T PLN02713        412 VFQNCNLYP  420 (566)
T ss_pred             EEeccEEEE
Confidence            677777753

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=96.43  E-value=0.49  Score=49.12  Aligned_cols=102  Identities=21%  Similarity=0.368  Sum_probs=65.5

Q ss_pred             CCCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-------------c
Q 020121           41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------G   96 (331)
Q Consensus        41 l~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-------------g   96 (331)
                      .+.+|.|   +.++||++-    ..|++|+=..|+-+  +.+.|.   +++||+|.|.+-+ |.+.             .
T Consensus       222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT  299 (530)
T PLN02933        222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT  299 (530)
T ss_pred             ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence            4445554   888999652    23444443456655  556673   6899999975433 3321             1


Q ss_pred             EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      +.+. +++++.|||+|++..+   +..-|+.+  .++++-+.+|.|....|-|+
T Consensus       300 ~~v~-a~~F~a~nitf~Ntag~~~~QAVAlrv--~~Dra~fy~C~f~G~QDTLy  350 (530)
T PLN02933        300 VGVK-GKGFIAKDISFVNYAGPAKHQAVALRS--GSDHSAFYRCEFDGYQDTLY  350 (530)
T ss_pred             EEEE-CCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEEeEEEecccccc
Confidence            3443 7999999999997643   22344444  47889999999987666554

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=96.37  E-value=0.086  Score=47.78  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             ceeeeee---------ccceEEecCcEEEeeeccEEEeeeEEecCCC----CCCC-ceEEcCCCceEEEeeeeeecCCCC
Q 020121           80 YKTIDGR---------GQRIKLTGKGLRLKECEHVIICNLEFEGGRG----HDVD-GIQIKPNSRHIWIDRCSLRDYDDG  145 (331)
Q Consensus        80 n~TI~G~---------g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~----~~~D-~I~i~~~~~nVwIDHcs~s~~~Dg  145 (331)
                      |++|.+.         +....-.+..|.+.+++||.|.|.+|..+..    ...| .+.+..++++|=|-+|-|......
T Consensus        52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~  131 (200)
T PF00544_consen   52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT  131 (200)
T ss_dssp             S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred             CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence            6777763         2232334567999999999999999997621    1134 456755788999999999764333


Q ss_pred             eeee------ecCCceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceE
Q 020121          146 LIDI------TRQSTDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT  215 (331)
Q Consensus       146 ~~di------~~~s~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~  215 (331)
                      ++.-      ......||+-+|+|.+... .=++..         -.+-+.+|+|.+.....=.++. +++-+.||||
T Consensus       132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             cccCCCCCccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            2211      1123689999999975321 112211         1577889999877777655554 4689999987

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=96.30  E-value=0.48  Score=49.68  Aligned_cols=120  Identities=20%  Similarity=0.441  Sum_probs=74.2

Q ss_pred             CCCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------
Q 020121           41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------   96 (331)
Q Consensus        41 l~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------   96 (331)
                      .+.+|.|   ++++||++-    ..|.+|+=..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.     +        
T Consensus       263 Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~sa  340 (572)
T PLN02990        263 VAQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTA  340 (572)
T ss_pred             ECCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeee
Confidence            3445655   899999752    23444443456544  557774   6899999975433 3321     1        


Q ss_pred             -EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCce
Q 020121           97 -LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTD  155 (331)
Q Consensus        97 -i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~  155 (331)
                       +.+ .+++++.|||+|++..+   +..-|+.+  .++...+.+|.|....|-++                 |+--+...
T Consensus       341 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~  417 (572)
T PLN02990        341 TVAI-NGDHFTAKNIGFENTAGPEGHQAVALRV--SADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAK  417 (572)
T ss_pred             EEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCce
Confidence             333 37999999999997643   22344444  46789999999976555543                 32223344


Q ss_pred             EEEeccEEec
Q 020121          156 ITVSRCYFTQ  165 (331)
Q Consensus       156 vTiS~n~f~~  165 (331)
                      .-+++|.|..
T Consensus       418 avf~~C~i~~  427 (572)
T PLN02990        418 VVLQNCNIVV  427 (572)
T ss_pred             EEEEccEEEE
Confidence            5667777753

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=96.23  E-value=0.55  Score=49.49  Aligned_cols=101  Identities=22%  Similarity=0.414  Sum_probs=65.3

Q ss_pred             CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121           42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i   97 (331)
                      +.+|.|   |+++||.+-    ..|++|+=..|+-+  +.+.|.   +|+||+|.|.+-| |.+.     +        +
T Consensus       290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~  367 (596)
T PLN02745        290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF  367 (596)
T ss_pred             CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence            344544   899999752    23444443456554  456674   5899999986444 3332     1        3


Q ss_pred             EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      .+ .+++++.|||+|++..+   +..-|+.+  .+++..+.+|.|....|-|+
T Consensus       368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v--~~Dr~~f~~c~~~G~QDTLy  417 (596)
T PLN02745        368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRV--QSDRSIFLNCRFEGYQDTLY  417 (596)
T ss_pred             EE-EcCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeEEeecccccc
Confidence            33 47999999999997542   23345555  47889999999986655553

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=96.23  E-value=0.57  Score=48.25  Aligned_cols=153  Identities=16%  Similarity=0.332  Sum_probs=87.5

Q ss_pred             CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-cC-----c--------E
Q 020121           42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L   97 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G~-----g--------i   97 (331)
                      +.+|.|   |+++||.+.    ..|.+|+=..|+-+  +.+.|.   +|+||+|.|.+-+|. +.     +        +
T Consensus       202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv  279 (509)
T PLN02488        202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV  279 (509)
T ss_pred             CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence            344544   788999652    23444443456544  557774   689999998654443 22     1        2


Q ss_pred             EEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceEEEe
Q 020121           98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVS  159 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~vTiS  159 (331)
                      .+ .+++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-++                 |+--+...+-++
T Consensus       280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq  358 (509)
T PLN02488        280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ  358 (509)
T ss_pred             EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence            33 378999999999976431 23344444357889999999986655553                 222233446677


Q ss_pred             ccEEeccC-----ceeeecCCCCCCCCcceEEEEeceeecCCCC
Q 020121          160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ  198 (331)
Q Consensus       160 ~n~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~  198 (331)
                      +|.|....     ++.+--.+-.. .+...-+.||+|.+.....
T Consensus       359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~~  401 (509)
T PLN02488        359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASSD  401 (509)
T ss_pred             ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCCc
Confidence            77776421     12222111000 0111246788887765443

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.14  Score=49.21  Aligned_cols=168  Identities=15%  Similarity=0.119  Sum_probs=98.0

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCC-----CCeeeeecCCceEEEeccEEeccCceee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~-----Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      +.|+.++|+.|-.+--..  .--+-++.|. .+.||+|...+|....     +..|.+..++.+|=|-+|.|..|....-
T Consensus        95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~  171 (345)
T COG3866          95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS  171 (345)
T ss_pred             EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence            666656666554332110  0124678887 6899999999998655     3345777788999999999998655311


Q ss_pred             ecCCCCC--CCCcceEEEEeceeecCCCCC---------CcccccCeEEEEcceEeccccceeeeccCceEEEEceEEec
Q 020121          172 IGADPSH--VGDRCIRVTIHHCLFDGTRQR---------HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA  240 (331)
Q Consensus       172 iG~~~~~--~~d~~~~vT~hhN~f~~~~~R---------~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~  240 (331)
                      --+.|..  +.....-||+..|+|+++.--         ++.-..-++.+-+|||.|.-.++=..|-+ .+-+-+|||+.
T Consensus       172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-~vHvyNNYy~~  250 (345)
T COG3866         172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-MVHVYNNYYEG  250 (345)
T ss_pred             ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee-EEEEecccccc
Confidence            1111211  111224799999999765422         22211113678899999875544333433 45566999995


Q ss_pred             CCcceeeeeeeccccCccccCccEEEEcCCeEEcCcc
Q 020121          241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQ  277 (331)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~  277 (331)
                      -++-.+..-+         .....+..+.|.|.++..
T Consensus       251 ~~~~g~a~~i---------G~~AkiyvE~NyF~~~~~  278 (345)
T COG3866         251 NPKFGVAITI---------GTSAKIYVENNYFENGSE  278 (345)
T ss_pred             CcccceEEee---------ccceEEEEecceeccCCC
Confidence            4432211000         012346667788877643

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=96.17  E-value=0.56  Score=48.85  Aligned_cols=116  Identities=16%  Similarity=0.353  Sum_probs=72.4

Q ss_pred             chHHHHhhcC---C----CeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-------------cEEEeee
Q 020121           47 GSLREGCRRR---E----PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKEC  102 (331)
Q Consensus        47 GsLr~ai~~~---~----pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-------------gi~i~~~  102 (331)
                      -++++||.+-   .    .|+||+=..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.             .+.+ .+
T Consensus       236 ~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~  312 (538)
T PLN03043        236 TTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SG  312 (538)
T ss_pred             cCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-EC
Confidence            4888899642   1    1455544456654  557673   6999999986443 3322             1344 37


Q ss_pred             ccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceEEEeccEEe
Q 020121          103 EHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVSRCYFT  164 (331)
Q Consensus       103 ~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~vTiS~n~f~  164 (331)
                      ++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-|+                 |+--+.--+-+++|.|.
T Consensus       313 ~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~  392 (538)
T PLN03043        313 ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLY  392 (538)
T ss_pred             CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEE
Confidence            9999999999975421 22344443357789999999976655543                 32233445677888776


Q ss_pred             c
Q 020121          165 Q  165 (331)
Q Consensus       165 ~  165 (331)
                      .
T Consensus       393 ~  393 (538)
T PLN03043        393 A  393 (538)
T ss_pred             E
Confidence            4

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=96.08  E-value=0.58  Score=49.05  Aligned_cols=99  Identities=18%  Similarity=0.345  Sum_probs=63.3

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------------cEE
Q 020121           43 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------------GLR   98 (331)
Q Consensus        43 d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------------gi~   98 (331)
                      .+|.|   +.++||.+    +..|.||+=..|+-+  +.+.|.   .|+||+|.|.+-+| .+.             .+.
T Consensus       264 ~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~  341 (565)
T PLN02468        264 KDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA  341 (565)
T ss_pred             CCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee
Confidence            34544   78888865    223444544566644  556664   58999999864443 321             133


Q ss_pred             EeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCe
Q 020121           99 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL  146 (331)
Q Consensus        99 i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~  146 (331)
                      +. +++++.|||+|++..+   +..-|+.+  .+++..+.+|.|....|-+
T Consensus       342 v~-~~~f~a~~itf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTL  389 (565)
T PLN02468        342 VF-GKGFMARDMGFRNTAGPIKHQAVALMS--SADLSVFYRCTMDAFQDTL  389 (565)
T ss_pred             EE-CCCeEEEEEEEEeCCCCCCCceEEEEE--cCCcEEEEEeEEEeccchh
Confidence            43 7899999999997543   23345554  4788999999997655554

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=96.03  E-value=0.11  Score=53.91  Aligned_cols=104  Identities=21%  Similarity=0.409  Sum_probs=67.4

Q ss_pred             CCCCCc---hHHHHhhcC------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c-------
Q 020121           42 SDDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G-------   96 (331)
Q Consensus        42 ~d~g~G---sLr~ai~~~------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g-------   96 (331)
                      +.+|.|   |.++||++.      ..|++|+=..|+-+  +.+.|.   +|+|++|.|.+-|+ .+.     +       
T Consensus       228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa  305 (539)
T PLN02995        228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA  305 (539)
T ss_pred             CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence            445655   899999752      12444443456644  456663   69999999864444 321     1       


Q ss_pred             -EEEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121           97 -LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLID  148 (331)
Q Consensus        97 -i~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d  148 (331)
                       +.+ .+++++.|||+|++..+. ..-|+-+.-.+++..+.+|.|....|-+++
T Consensus       306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~  358 (539)
T PLN02995        306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV  358 (539)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc
Confidence             334 389999999999976431 123444433578899999999988777754

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=96.03  E-value=0.034  Score=49.60  Aligned_cols=102  Identities=25%  Similarity=0.414  Sum_probs=56.1

Q ss_pred             ceeeeeeccceEEe--cCcEEEeeeccEEEeeeEEecCCCCCCCceEE-------------------cCCCceEEEeeee
Q 020121           80 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQI-------------------KPNSRHIWIDRCS  138 (331)
Q Consensus        80 n~TI~G~g~g~~i~--G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i-------------------~~~~~nVwIDHcs  138 (331)
                      +++|.|.+..  ..  ..++.+..+.|+.|+|++++...   .++|.+                   +.++.+++++.|.
T Consensus        98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
T PF12708_consen   98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI  172 (225)
T ss_dssp             EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred             eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence            5777776322  21  34677777899999999999742   233332                   2111223334444


Q ss_pred             eecCCCCeeeeecCCceEEEeccEEec-cCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 020121          139 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       139 ~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      +....++ +  ..+.++++++||.|.. ...+..+-...        .+++.+|.|.+|.
T Consensus       173 ~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~  221 (225)
T PF12708_consen  173 FNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD  221 (225)
T ss_dssp             EESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred             ccCCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence            4555555 2  2233678888888775 44444332211        3666666776664

...

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=95.99  E-value=0.66  Score=48.28  Aligned_cols=96  Identities=20%  Similarity=0.410  Sum_probs=63.1

Q ss_pred             chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------EEEeeeccE
Q 020121           47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------LRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i~i~~~~NV  105 (331)
                      -++++||.+    +..|.||+=..|+-+  +.+.|.   +|+||+|.|.+-+ |.+.     +        +.+ .++++
T Consensus       245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F  321 (537)
T PLN02506        245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF  321 (537)
T ss_pred             cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence            578889965    234555554556544  446663   6999999975443 3322     1        333 48999


Q ss_pred             EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121          106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus       106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      +.|||+|++..+   ...-|+.+  .++++-+.+|.|....|-++
T Consensus       322 ~a~nit~~Ntag~~~~QAVAl~v--~~D~~~fy~C~~~G~QDTLy  364 (537)
T PLN02506        322 IARDITFRNTAGPQNHQAVALRV--DSDQSAFYRCSMEGYQDTLY  364 (537)
T ss_pred             EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEcceeecccccce
Confidence            999999997642   23445555  47889999999987666554

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=95.98  E-value=0.68  Score=48.75  Aligned_cols=142  Identities=18%  Similarity=0.368  Sum_probs=84.2

Q ss_pred             chHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------EEEeeeccE
Q 020121           47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i~i~~~~NV  105 (331)
                      -++++||++.    ..|.||+=..|+-+  +.+.|.   .|++|+|.|.+-|| .+.     |        +.+ .++++
T Consensus       288 ~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F  364 (587)
T PLN02313        288 TTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERF  364 (587)
T ss_pred             ccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCe
Confidence            4788899652    23544444456544  556674   58999999864443 321     1        233 37899


Q ss_pred             EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceEEEeccEEec
Q 020121          106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~vTiS~n~f~~  165 (331)
                      +.|||+|++..+   +..-|+.+  .++...+-+|.|....|-+                 +|+--+...+-+++|.|..
T Consensus       365 ~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~~  442 (587)
T PLN02313        365 LARDITFQNTAGPSKHQAVALRV--GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINA  442 (587)
T ss_pred             EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEccEEEE
Confidence            999999997643   23345555  4788999999997554443                 3333344456788888864


Q ss_pred             cC-----ceeee--cCCCCCCCCcceEEEEeceeecCC
Q 020121          166 HD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       166 h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      ..     ++.+-  |..+.   +...-+.||+|.+...
T Consensus       443 r~~~~~~~~~iTAqgr~~~---~~~tG~v~~~c~i~~~  477 (587)
T PLN02313        443 RRPNSGQKNMVTAQGRSDP---NQNTGIVIQNCRIGGT  477 (587)
T ss_pred             ecCCCCCcceEEecCCCCC---CCCceEEEEecEEecC
Confidence            21     12222  22221   1123477888877543

>PLN02916 pectinesterase family protein

Probab=95.92  E-value=0.8  Score=47.25  Aligned_cols=96  Identities=17%  Similarity=0.316  Sum_probs=62.9

Q ss_pred             chHHHHhhcC-------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------------cEEEeee
Q 020121           47 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------------GLRLKEC  102 (331)
Q Consensus        47 GsLr~ai~~~-------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------------gi~i~~~  102 (331)
                      -|+++||++-       ..|++|+=..|+-+  +.+.|.   +|+||+|.|..-++ .+.             .+.+ .+
T Consensus       200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~  276 (502)
T PLN02916        200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG  276 (502)
T ss_pred             cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence            4789999642       23555543456544  556674   58999999754443 321             1333 37


Q ss_pred             ccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121          103 EHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus       103 ~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      ++++.|||+|++..+   ...-|+.+  .++...+.+|.|....|-++
T Consensus       277 ~~F~A~nitf~Ntag~~~~QAVALrv--~~D~a~fy~C~f~G~QDTLy  322 (502)
T PLN02916        277 DGFWARDITFENTAGPHKHQAVALRV--SSDLSVFYRCSFKGYQDTLF  322 (502)
T ss_pred             CCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEeccCceeE
Confidence            899999999997642   23345555  46888999999987666654

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=95.91  E-value=0.92  Score=47.74  Aligned_cols=97  Identities=21%  Similarity=0.369  Sum_probs=62.9

Q ss_pred             chHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------EEEeeeccE
Q 020121           47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------LRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i~i~~~~NV  105 (331)
                      -++++||++-    ..|+||+=..|+-+-. .+.|.   +|+||+|.|.+-+ |.+.     +        +.+ .++++
T Consensus       285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F  362 (587)
T PLN02484        285 KTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF  362 (587)
T ss_pred             ccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence            4788899652    2355554445665421 36664   6899999986444 4332     1        333 37999


Q ss_pred             EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121          106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus       106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      +.|||+|++..+   +..-|+.+  .+++..+.+|.|....|-++
T Consensus       363 ~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~G~QDTLy  405 (587)
T PLN02484        363 IARDMTFENWAGPAKHQAVALRV--GADHAVVYRCNIIGYQDTLY  405 (587)
T ss_pred             EEEeeEEEECCCCCCCceEEEEe--cCCcEEEEeeeEeccCcccc
Confidence            999999997643   23345555  46789999999976655553

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=95.84  E-value=0.41  Score=46.18  Aligned_cols=111  Identities=16%  Similarity=0.333  Sum_probs=64.9

Q ss_pred             chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC-------------cEEEeeeccE
Q 020121           47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK-------------GLRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~-------------gi~i~~~~NV  105 (331)
                      -++++||+.    ...+.+|+-..|+-+  +.|.|.   +++||+|.+..- .|.+.             .|.+. ++++
T Consensus        13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f   89 (298)
T PF01095_consen   13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF   89 (298)
T ss_dssp             SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred             cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence            468889874    223454554566655  557774   599999997533 34432             15554 8999


Q ss_pred             EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      +++||+|++..+   ...-||.+.  ++++.+.+|.|.-..|-++.-   ....-+.+|+|..
T Consensus        90 ~~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG  147 (298)
T PF01095_consen   90 TAENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG  147 (298)
T ss_dssp             EEEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred             eeeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence            999999997432   234567764  578999999999888877643   2345567787774

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02304 probable pectinesterase

Probab=95.72  E-value=0.21  Score=49.65  Aligned_cols=113  Identities=14%  Similarity=0.173  Sum_probs=72.5

Q ss_pred             chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEE-ecC-------------cEEEeeeccE
Q 020121           47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKL-TGK-------------GLRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i-~G~-------------gi~i~~~~NV  105 (331)
                      -|+++||++-    ..|++|+=..|+-+  +.|.|   .+++||+|+|..-++ ...             .+.+. ++++
T Consensus        88 ~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~-a~~F  164 (379)
T PLN02304         88 TTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVF-ASNF  164 (379)
T ss_pred             cCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEE-CCCe
Confidence            4899999752    23454443456544  56777   379999999754333 211             13343 7999


Q ss_pred             EEeeeEEecCCCC------CCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          106 IICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       106 IIrnL~i~~g~~~------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      +.|||+|++....      ..-|+-+.-.++++.+.+|.|.-..|-|++-.   ..--+.+|.|..
T Consensus       165 ~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~---gR~Yf~~CyIeG  227 (379)
T PLN02304        165 IAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR---GRHYFKDCYIQG  227 (379)
T ss_pred             EEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC---CCEEEEeeEEcc
Confidence            9999999975311      12234443347889999999999999887532   234456777764

>PLN02314 pectinesterase

Probab=95.62  E-value=0.18  Score=52.92  Aligned_cols=98  Identities=16%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------EEEeeeccE
Q 020121           47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i~i~~~~NV  105 (331)
                      -++++||++    +..|+||+=..|+-+  +.+.|.   .|+|++|.|.+-+| .+.     |        +.+ .++++
T Consensus       291 ~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F  367 (586)
T PLN02314        291 KTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGF  367 (586)
T ss_pred             cCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCe
Confidence            488999965    223555544456644  556664   58999999754433 321     1        334 47999


Q ss_pred             EEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121          106 IICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus       106 IIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      +.|||+|++..+. ..-|+-+.-+++...+.+|.|....|-|+
T Consensus       368 ~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy  410 (586)
T PLN02314        368 IAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY  410 (586)
T ss_pred             EEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence            9999999976432 12344443357889999999987766664

>PLN02634 probable pectinesterase

Probab=94.95  E-value=0.68  Score=45.80  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEEe------------cC--------cEEE
Q 020121           47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT------------GK--------GLRL   99 (331)
Q Consensus        47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~------------G~--------gi~i   99 (331)
                      -|+++||++-    ..|++++=..|+-+  +.+.|   .+++||.|.|..-++.            |.        .+.+
T Consensus        69 ~TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V  146 (359)
T PLN02634         69 RSVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV  146 (359)
T ss_pred             cCHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE
Confidence            4889999752    22443433456543  55666   3689999997654443            10        1334


Q ss_pred             eeeccEEEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          100 KECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       100 ~~~~NVIIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                       .+++++.+||+|++...        ...-|+.+  .++++-+.+|.|.-..|-|++-   ...--..+|.|..
T Consensus       147 -~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v--~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIeG  214 (359)
T PLN02634        147 -YANYFTARNISFKNTAPAPMPGMQGWQAVAFRI--SGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIEG  214 (359)
T ss_pred             -ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEe--cCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEcc
Confidence             37899999999997532        12334455  4678999999999888887643   2234445666653

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=94.77  E-value=1.3  Score=44.76  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             eeccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC---------CceEEEeccEEe
Q 020121          101 ECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ---------STDITVSRCYFT  164 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~---------s~~vTiS~n~f~  164 (331)
                      .+++++.+||+|+....       ...-|+.+  .++++.+.+|.|.-..|-|+.-..+         ...--+.+|.|.
T Consensus       204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv--~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe  281 (422)
T PRK10531        204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE  281 (422)
T ss_pred             ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE--cCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence            47999999999997632       12334445  4678999999999888888753111         123455667766


Q ss_pred             c
Q 020121          165 Q  165 (331)
Q Consensus       165 ~  165 (331)
                      .
T Consensus       282 G  282 (422)
T PRK10531        282 G  282 (422)
T ss_pred             e
Confidence            4

>PLN02671 pectinesterase

Probab=94.65  E-value=0.87  Score=45.05  Aligned_cols=111  Identities=14%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeecc---ceEEecC---------c----------E
Q 020121           47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTGK---------G----------L   97 (331)
Q Consensus        47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~---g~~i~G~---------g----------i   97 (331)
                      -|+++||++-    ..+++|+=..|+-+  +.+.|   .+++||+|.|.   ...|...         +          +
T Consensus        72 ~TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv  149 (359)
T PLN02671         72 LTVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV  149 (359)
T ss_pred             cCHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence            4789999652    22443433456543  56777   36899999863   3344411         1          3


Q ss_pred             EEeeeccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121           98 RLKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      .+ .+++++.+||+|++...       ...-|+.+  .++++-+.+|.|.-..|-|++-.   ..--+.+|.|..
T Consensus       150 ~v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~CyIeG  218 (359)
T PLN02671        150 TI-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLDET---GSHYFYQCYIQG  218 (359)
T ss_pred             EE-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEeCC---CcEEEEecEEEE
Confidence            33 37899999999997521       12345555  46889999999998888887542   234456676664

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=93.79  E-value=0.3  Score=50.69  Aligned_cols=98  Identities=23%  Similarity=0.384  Sum_probs=69.9

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCceEEcC-----------CCceEEEeeeeeecCCCCeeeee---cCCceEEEec
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKP-----------NSRHIWIDRCSLRDYDDGLIDIT---RQSTDITVSR  160 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~-----------~~~nVwIDHcs~s~~~Dg~~di~---~~s~~vTiS~  160 (331)
                      .||.+..|+||.|.+.+|..+    +|+|.+..           -+++|||-||-|..+.-++..-.   .+-.+|++.+
T Consensus       288 DG~d~~sc~NvlI~~~~fdtg----DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved  363 (542)
T COG5434         288 DGFDPGSCSNVLIEGCRFDTG----DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVED  363 (542)
T ss_pred             CccccccceeEEEeccEEecC----CceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEe
Confidence            378999999999999999964    46665531           25789999999998877775432   3457999999


Q ss_pred             cEEeccCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 020121          161 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       161 n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      |.|.+.+.+.-|....... ...-+|+|+.+...+..
T Consensus       364 ~~~~~~d~GLRikt~~~~g-G~v~nI~~~~~~~~nv~  399 (542)
T COG5434         364 CVMDNTDRGLRIKTNDGRG-GGVRNIVFEDNKMRNVK  399 (542)
T ss_pred             eeeccCcceeeeeeecccc-eeEEEEEEecccccCcc
Confidence            9999876666555433221 11237778777766654

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=93.08  E-value=0.21  Score=50.28  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=14.4

Q ss_pred             ceEEEeeeeeecC------CCCeeeeec-----CCceEEEeccEEec
Q 020121          130 RHIWIDRCSLRDY------DDGLIDITR-----QSTDITVSRCYFTQ  165 (331)
Q Consensus       130 ~nVwIDHcs~s~~------~Dg~~di~~-----~s~~vTiS~n~f~~  165 (331)
                      .+-+||||-|...      .-|.|-+..     ...+.+|++|+|..
T Consensus       164 ~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~  210 (425)
T PF14592_consen  164 NYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFER  210 (425)
T ss_dssp             ---EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEE
T ss_pred             cCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhh
Confidence            3558999999731      223333321     13578888888875

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=92.72  E-value=0.92  Score=40.76  Aligned_cols=65  Identities=26%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             ceEEEeccEEeccCc--eeeecCCCCCCCCcceEEEEeceeecCCCCCCccc--ccC-------eEEEEcceEeccc
Q 020121          154 TDITVSRCYFTQHDK--TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFG-------KVHLYNNYTRNWG  219 (331)
Q Consensus       154 ~~vTiS~n~f~~h~k--~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~G-------~~hv~NN~~~n~~  219 (331)
                      ++|-|=+|.|.+-.-  ..|+|...+...+...+|-+|||.|-.+. .+|.+  ..|       ..-+.||+|+..-
T Consensus         2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tG-tn~~~~wvGGIv~sGF~ntlIENNVfDG~y   77 (198)
T PF08480_consen    2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTG-TNPNIDWVGGIVTSGFYNTLIENNVFDGVY   77 (198)
T ss_pred             CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCC-cCCCCceeeeEEeccccccEEEeeeecccc
Confidence            467888888887543  34568765555555558999999997653 23433  322       2368888888653

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=87.38  E-value=3.1  Score=40.87  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             eeEeccceeeeeeccceEEecC--cEEEeeeccEEEeeeEEecCCC----CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121           74 YLSVSSYKTIDGRGQRIKLTGK--GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  147 (331)
Q Consensus        74 ~l~v~sn~TI~G~g~g~~i~G~--gi~i~~~~NVIIrnL~i~~g~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~  147 (331)
                      .|.+....|-++.- ...|.|.  ||.+.++.++.|+.-+|.+-..    ..++||.+. ++..+-|--++++...|+++
T Consensus        99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy  176 (408)
T COG3420          99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY  176 (408)
T ss_pred             eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence            35555555555542 2234443  5778889999999999987532    347999998 88899999999999999985


Q ss_pred             eeecCCceEEEeccEEeccCce
Q 020121          148 DITRQSTDITVSRCYFTQHDKT  169 (331)
Q Consensus       148 di~~~s~~vTiS~n~f~~h~k~  169 (331)
                      .  .-|..-+++.|.|++-.++
T Consensus       177 ~--~~S~~~~~~gnr~~~~Ryg  196 (408)
T COG3420         177 S--DTSQHNVFKGNRFRDLRYG  196 (408)
T ss_pred             E--cccccceecccchhheeee
Confidence            3  3477888899988875443

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=83.25  E-value=7.8  Score=36.81  Aligned_cols=63  Identities=22%  Similarity=0.425  Sum_probs=45.8

Q ss_pred             eeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121          101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      +++|..|.|.+|..|..    +  +. .++||-+++|.|.|-+=    +++ ++++.|.+|.|..-.+..+|.+.
T Consensus        17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~   79 (277)
T PF12541_consen   17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSN   79 (277)
T ss_pred             ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeC
Confidence            47899999999996542    2  33 57899999999987431    222 56788888888887777777655

Proteins in this family are typically between 281 and 297 amino acids in length.

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=82.24  E-value=23  Score=33.76  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             CceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEecc
Q 020121          153 STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNW  218 (331)
Q Consensus       153 s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~  218 (331)
                      +.||||.++.+.+-.    +|+..       .++||-+|.+...   .|+.-.-.+.+.|.-+.+.
T Consensus       174 ~eNVtVyDS~i~GEY----LgW~S-------kNltliNC~I~g~---QpLCY~~~L~l~nC~~~~t  225 (277)
T PF12541_consen  174 CENVTVYDSVINGEY----LGWNS-------KNLTLINCTIEGT---QPLCYCDNLVLENCTMIDT  225 (277)
T ss_pred             CCceEEEcceEeeeE----EEEEc-------CCeEEEEeEEecc---CccEeecceEEeCcEeecc
Confidence            567777777666432    23211       1688888877654   4666555677888877654

Proteins in this family are typically between 281 and 297 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
1pxz_A	346	1.7 Angstrom Crystal Structure Of Jun A 1, The Majo		2e-36
3zsc_A	340	Catalytic Function And Substrate Recognition Of The		2e-25
1vbl_A	416	Structure Of The Thermostable Pectate Lyase Pl 47 L		3e-24
3vmv_A	326	Crystal Structure Of Pectate Lyase Bsp165pela From		2e-18
1bn8_A	420	Bacillus Subtilis Pectate Lyase Length = 420		9e-18
2bsp_A	420	Bacillus Subtilis Pectate Lyase R279k Mutant Length		2e-17
3krg_A	399	Structural Insights Into Substrate Specificity And		4e-17
2nzm_A	399	Hexasaccharide I Bound To Bacillus Subtilis Pectate		6e-17
1pcl_A	355	Unusual Structural Features In The Parallel Beta-He		2e-16
1jrg_A	361	Crystal Structure Of The R3 Form Of Pectate Lyase A		1e-14
1ooc_A	361	Mutations In The T1.5 Loop Of Pectate Lyase A Lengt		2e-14
2qxz_A	330	Pectate Lyase R236f From Xanthomonas Campestris Len		5e-10
2qy1_A	330	Pectate Lyase A31g/r236f From Xanthomonas Campestri		5e-10
2qx3_A	330	Structure Of Pectate Lyase Ii From Xanthomonas Camp		9e-09
1plu_A	353	Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu		1e-05
2ewe_A	353	Crystal Structure Of Pectate Lyase C R218k Mutant I		2e-05

>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 151/325 (46%), Gaps = 38/325 (11%)
Query: 9   VDSCLRA----------LAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +DSC R           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G  
Sbjct: 4   IDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGAT 63
Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVIICNLEF 112
           R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++  HVI+ +L  
Sbjct: 64  REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHI 123
Query: 113 EGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS 153
            G                       D D I ++ N  + WID  SL D  DGLID+T  S
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGS 182
Query: 154 TDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYN 212
           T IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR R+G VH+ N
Sbjct: 183 TGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVAN 242
Query: 213 NYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLI-RSEGDI 271
           N    W IYA+  S    I S+ N + A  +    E       +   A +  + RS  D 
Sbjct: 243 NNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDA 302
Query: 272 FLKGAQAQLLTGVGEECVFHPSEYY 296
           F+ GA         E  +++ +E +
Sbjct: 303 FINGAYFVSSGKTEETNIYNSNEAF 327

>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 34/235 (14%)
Query: 28  IGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSY--LSVSSYKTIDG 85
           +GGL G + FV    +    +  EG         V  V GTI       + V S KTI G
Sbjct: 22  VGGLGGEIVFVRTAEELEKYTTAEGKY-------VIVVDGTIVFEPKREIKVLSDKTIVG 74
Query: 86  RGQRIKLTGKGLRLKECEHVIICNLEFEG--------GRGHDVDGIQIKPNSRHIWIDRC 137
                K+ G GL +K+ ++VII N+ FEG        G+ +D D I ++ NS HIWID  
Sbjct: 75  INDA-KIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHI 132
Query: 138 SLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA----DPSHVGDRCIRVTIHHCLF 193
           +  + +DG +DI + S  ITVS   F  HDK  L+G+    DP   G +  +VT HH  F
Sbjct: 133 TFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQAG-QAYKVTYHHNYF 191
Query: 194 DGTRQRHPRLRFGKVHLYNNY----------TRNWGIYAVCASVESQIYSQCNIY 238
               QR PR+RFG  H++NN+             + IY V +++ ++++ + N +
Sbjct: 192 KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYF 246

>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 77  VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGHDV 120
           V S  +I G G+  K+ G G  +K  ++VII N+EFE                G    + 
Sbjct: 130 VGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEY 189
Query: 121 DGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYF 163
           D I I+  S HIWID  +  D D                 DG +DI   S  IT+S   F
Sbjct: 190 DSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVF 248
Query: 164 TQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-- 220
           T HDK  LIGA  S + D   +RVT+HH  +    QR PR+RFG+VH+YNNY     +  
Sbjct: 249 TNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLAD 308
Query: 221 ----YAVCASVESQIYSQCNIY 238
               YA    V SQIY+Q N +
Sbjct: 309 YDFQYAWGVGVFSQIYAQNNYF 330

>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 82  TIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSL-- 139
           +I G G   +  G G+RL    ++II N+     R  +   I++  +S+++WID      
Sbjct: 82  SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 140 -------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI---RVTIH 189
                   DY DGL+D+ R +  ITVS   F  H KTML+G    H  +  +   ++T H
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVG----HTDNASLAPDKITYH 197
Query: 190 HCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE---AGQKKRT 246
           H  F+    R P +R+  VH++NNY ++    A+ + V ++++ + N ++   +GQ   T
Sbjct: 198 HNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPT 257

>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 118
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 119 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 161
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 162 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 214
           Y+  HDK+ + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY      
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 321
Query: 215 ------TRNWGIYAVCASVESQIYSQCNI 237
                 +  WGI        S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345

>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 118
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 119 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 161
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 162 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 214
           Y+  HDK+ + G+  S   D   +++T+HH  +    Q+ PR+RFG+VH+YNNY      
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTS 321
Query: 215 ------TRNWGIYAVCASVESQIYSQCNI 237
                 +  WGI        S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345

>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 118
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWAS 181
Query: 119 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 161
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 162 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 214
           Y+  HD + + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY      
Sbjct: 241 YYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 300
Query: 215 ------TRNWGIYAVCASVESQIYSQCNI 237
                 +  WGI        S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324

>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 118
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 181
Query: 119 DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 161
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 162 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 214
           Y+  HDK+ + G+  S   D   +++T+HH  +    Q  PR+RFG+VH+YNNY      
Sbjct: 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTS 300
Query: 215 ------TRNWGIYAVCASVESQIYSQCNI 237
                 +  WGI        S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324

>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 73  SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNL----------EFEGGRGHDVD- 121
           S +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G + + 
Sbjct: 74  SQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEW 133
Query: 122 GIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYFT 164
              +  NS ++W+D  ++ D                   DG +DI + S  +T+S   F 
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 165 QHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNN 213
            HDKT+LIG   S+       +RVT H+ +FD   +R PR+RFG +H YNN
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244

>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 54/241 (22%)
Query: 21  EGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS-------- 72
            GF           +Y VTN+S+    +L  G   +     + ++ GTI +S        
Sbjct: 21  NGFTTGGAAATSDNIYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDF 74
Query: 73  ------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---HVIICNL----------EFE 113
                 S +++ +  T+ G G   K     L +   +   +VII N+           +E
Sbjct: 75  ADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYE 134
Query: 114 GGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQST 154
            G G +   D + I   + H+WID  ++ D +                 DG +DI R S 
Sbjct: 135 KGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSD 194
Query: 155 DITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYN 212
            +T+S     QHDKTMLIG  D +   D+  + VT+ + +F+   +R PR+R+G +H +N
Sbjct: 195 YVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFN 254
Query: 213 N 213
           N
Sbjct: 255 N 255

>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 54/241 (22%)
Query: 21  EGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS-------- 72
            GF           +Y VTN+S+    +L  G   +     + ++ GTI +S        
Sbjct: 21  NGFTTGGAAATSDNIYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDF 74
Query: 73  ------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---HVIICNL----------EFE 113
                 S +++ +  T+ G G   K     L +   +   +VII N+           +E
Sbjct: 75  ADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYE 134
Query: 114 GGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQST 154
            G G +   D + I   + H+WID  ++ D +                 DG +DI R S 
Sbjct: 135 KGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSD 194
Query: 155 DITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYN 212
            +T+S     QHDKTMLIG +D +   D+  + VT+ + +F+   +R PR+R+G +H +N
Sbjct: 195 YVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFN 254
Query: 213 N 213
           N
Sbjct: 255 N 255

>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 96  GLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID---------RCS 138
           G+R+    H VII N+     +GG   D D I ++ NS      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 139 -LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT 196
              D   DG ID+ +    +TVS  Y   + K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 197 RQRHPRLRFGKVHLYNNYTRN 217
             R P  RFG  H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 96  GLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID---------RCS 138
           G+R+    H VII N+     +GG   D D I ++ NS      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 139 -LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT 196
              D   DG ID+ +    +TVS  Y   + K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 197 RQRHPRLRFGKVHLYNNYTRN 217
             R P  RFG  H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 96  GLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID---------RCS 138
           G+R+    H VII N+     +GG   D D I ++ NS      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 139 -LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT 196
              D   DG ID+ +    +TVS  Y   + K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 197 RQRHPRLRFGKVHLYNNYTRN 217
             R P  R G  H+YNNY  N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225

>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 96  GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 143
           G+ +K+   V++ N+   +  G   D D I++  +S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 144 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 200
              +  +DI   S  +TVS  Y     K   +G D S   D    +T HH  ++    R 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 201 PRLRFGKVHLYNNYTRN 217
           P  R G VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236

>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 96  GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 143
           G+ +K+   V++ N+   +  G   D D I++  +S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 144 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 200
              +  +DI   S  +TVS  Y     K   +G D S   D    +T HH  ++    + 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 201 PRLRFGKVHLYNNYTRN 217
           P  R G VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	1e-90
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	2e-87
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	2e-81
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	7e-71
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	9e-69
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	1e-66
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	1e-63
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	1e-57
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	4e-57
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	9e-57
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	3e-56
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	2e-08
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	5e-08
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	8e-05
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	3e-04

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346

 Score =  273 bits (699), Expect = 1e-90
 Identities = 106/332 (31%), Positives = 150/332 (45%), Gaps = 38/332 (11%)

Query: 9   VDSCLR----------ALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +DSC R           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G  
Sbjct: 4   IDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGAT 63

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVIICNLEF 112
           R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++  HVI+ +L  
Sbjct: 64  REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHI 123

Query: 113 E-------------------GGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS 153
                                    D D I ++ N  + WID  SL D  DGLID+T  S
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGS 182

Query: 154 TDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFD-GTRQRHPRLRFGKVHLYN 212
           T IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR R+G VH+ N
Sbjct: 183 TGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVAN 242

Query: 213 NYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADK-LEAKSGLIRSEGDI 271
           N    W IYA+  S    I S+ N + A  +    E       +      + + RS  D 
Sbjct: 243 NNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDA 302

Query: 272 FLKGAQAQLLTGVGEECVFHPSEYYPTWTMEA 303
           F+ GA         E  +++ +E +      A
Sbjct: 303 FINGAYFVSSGKTEETNIYNSNEAFKVENGNA 334

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340

 Score =  265 bits (678), Expect = 2e-87
 Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 41/332 (12%)

Query: 15  ALAGQAEGF--------GRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVS 66
           +L  +  GF            +GGL G + FV    +     L +         IV + +
Sbjct: 1   SLNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIVVDGT 55

Query: 67  GTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG--------GRGH 118
                   + V S KTI G     K+ G GL +K+ ++VII N+ FEG        G+ +
Sbjct: 56  IVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKY 114

Query: 119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
           D D I ++ NS HIWID  +  + +DG +DI + S  ITVS   F  HDK  L+G+    
Sbjct: 115 DFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKE 173

Query: 179 VGD---RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNW----------GIYAVCA 225
             +   +  +VT HH  F    QR PR+RFG  H++NN+               IY V +
Sbjct: 174 DPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233

Query: 226 SVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDI----FLKGAQAQLL 281
           ++ ++++ + N +                   +    G +          F    + ++ 
Sbjct: 234 AMGAKVHVEGNYFMGYGAVMAEAGIAFLPTRIMGPVEGYLTLGEGDAKNEFYYCKEPEVR 293

Query: 282 TGVGEECVFHPSEYYPTWTMEAPSDSLKQILQ 313
                +    P EYY  +T++   D  K ++ 
Sbjct: 294 PVEEGKPALDPREYYD-YTLDPVQDVPKIVVD 324

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326

 Score =  249 bits (636), Expect = 2e-81
 Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 41/328 (12%)

Query: 17  AGQAEGFGRF---AIGGLHGPVYFVTNLSD--DGPGSLREGCRRREPLWIVFEVSGTIHL 71
           +   +G+        GG  G V + +  +       +        EPL I   V+GTI  
Sbjct: 1   SNGPQGYASMNGGTTGGAGGRVEYASTGAQIQQLIDNRSRSNNPDEPLTIY--VNGTITQ 58

Query: 72  SSY-------------LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGH 118
            +                     +I G G   +  G G+RL    ++II N+     R  
Sbjct: 59  GNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREG 118

Query: 119 DVDGIQIKPNSRHIWIDRCSL---------RDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
           +   I++  +S+++WID              DY DGL+D+ R +  ITVS   F  H KT
Sbjct: 119 EGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKT 178

Query: 170 MLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVES 229
           ML+G   +       ++T HH  F+    R P +R+  VH++NNY ++    A+ + V +
Sbjct: 179 MLVGHTDNASLAP-DKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGA 237

Query: 230 QIYSQCNIYEAG----QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVG 285
           +++ + N ++          T               +G     G++F+    + L +   
Sbjct: 238 RVFVENNYFDNVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPNSHLNSTTN 297

Query: 286 EECVFHPSEYYPTWTMEAPSDSLKQILQ 313
               F P   Y    +++ + +   + Q
Sbjct: 298 ----FTPPYSY---QVQSATQAKSSVEQ 318

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355

 Score =  223 bits (569), Expect = 7e-71
 Identities = 82/361 (22%), Positives = 133/361 (36%), Gaps = 62/361 (17%)

Query: 13  LRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS 72
             A  G A   G    G        V N+SD      ++     +    + +V+G I +S
Sbjct: 5   DAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDIS 59

Query: 73  SY--------------LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG---- 114
                           +S+ S  TI G G   K T   L +K  ++VI+ NL  E     
Sbjct: 60  GGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDV 119

Query: 115 --------GRGHDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDI 149
                   G   + D   I  NS ++W+D  ++ D                   DG +DI
Sbjct: 120 APHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDI 178

Query: 150 TRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR--CIRVTIHHCLFDGTRQRHPRLRFGK 207
            + S  +T+S   F  HDKT+LIG   S+       +RVT H+ +FD   +R PR+RFG 
Sbjct: 179 KKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGS 238

Query: 208 VHLYNNYTRN-------WGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA 260
           +H YNN             +Y+        I S+ N +     K       E +  K   
Sbjct: 239 IHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNPECSIVK--Q 296

Query: 261 KSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS 320
            +  + S+    + G+             + P+  Y  ++ +  + SL   +    G+  
Sbjct: 297 FNSKVFSDKGSLVNGS-TTTKLDTCGLTAYKPTLPYK-YSAQTMTSSLATSINNNAGYGK 354

Query: 321 I 321
           +
Sbjct: 355 L 355

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361

 Score =  218 bits (555), Expect = 9e-69
 Identities = 71/342 (20%), Positives = 126/342 (36%), Gaps = 58/342 (16%)

Query: 20  AEGFGRFAIGGLHGPVYFVTNLSDD--------GPGSLREGCRRREPLWIVFEVSGTIHL 71
             GF           +Y VTN+S+             ++            +        
Sbjct: 20  QNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKA 79

Query: 72  SSYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---HVIICNLEFE------------GGR 116
            S +++ +  T+ G G   K     L +   +   +VII N+  +             G 
Sbjct: 80  RSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGW 139

Query: 117 GHDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVS 159
             + D + I   + H+WID  ++ D +                 DG +DI R S  +T+S
Sbjct: 140 NAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTIS 199

Query: 160 RCYFTQHDKTMLIGA-DPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 217
                QHDKTMLIG  D +   D+  + VT+ + +F+   +R PR+R+G +H +NN  + 
Sbjct: 200 NSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKG 259

Query: 218 -------WGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGD 270
                     Y+        + S+ N +              KA   ++  +G I S+  
Sbjct: 260 DAKDPVYRYQYSFGIGTSGSVLSEGNSFTIAN------LSASKACKVVKKFNGSIFSDNG 313

Query: 271 IFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQIL 312
             L G+    L+G G    +     Y  + ++  +  L Q +
Sbjct: 314 SVLNGSAVD-LSGCG-FSAYTSKIPYI-YDVQPMTTELAQSI 352

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330

 Score =  211 bits (538), Expect = 1e-66
 Identities = 64/319 (20%), Positives = 98/319 (30%), Gaps = 39/319 (12%)

Query: 20  AEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRRE-PLWIVFEVSGTIHLSS----- 73
             G+G    GG +     V          ++           +V   +G     +     
Sbjct: 2   PVGYGAGTTGGGNKVPVNVATFEA-----MQSAIDSYSGSGGLVLNYTGKFDFGTIKDVC 56

Query: 74  ----------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG-HDVDG 122
                      +   S  TI G        G  + +    +VII N+     +G  D D 
Sbjct: 57  AQWKLPAKTVQIKNKSDVTIKGANGSAANFGIRV-VGNAHNVIIQNMTIGLLQGGEDADS 115

Query: 123 IQIKPNS----RHIWIDRCSL-----------RDYDDGLIDITRQSTDITVSRCYFTQHD 167
           I ++ NS      IW+D  ++               DG ID+ +    +TVS  Y   + 
Sbjct: 116 ISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQ 175

Query: 168 KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASV 227
           K  L G   S   +   R T HH  F+    R P  RFG  H+YNNY  N     +   +
Sbjct: 176 KVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRM 235

Query: 228 ESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEE 287
                 + N +E  +   T    +E     L                       T     
Sbjct: 236 GGIAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWGTPDGSKPYANATNWIST 295

Query: 288 CVFHPSEYYPTWTMEAPSD 306
            VF  S  Y  +T+   + 
Sbjct: 296 KVFPESLGY-IYTVTPAAQ 313

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353

 Score =  204 bits (520), Expect = 1e-63
 Identities = 55/298 (18%), Positives = 95/298 (31%), Gaps = 47/298 (15%)

Query: 15  ALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRR-----REPLWIVFEVSGTI 69
              G A   G    G +      + ++ +    +  +   +       PL I +  +   
Sbjct: 3   DTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDS 62

Query: 70  HLSSYLS---------------VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG 114
            +++  +                   K I   G        G+ +K+   V++ N+    
Sbjct: 63  LINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGY 122

Query: 115 GRGHDV--DGIQIKPNSRHIWIDRCSLRDYD-------------DGLIDITRQSTDITVS 159
             G     D I++  +S ++W+D   L   +             +  +DI   S  +TVS
Sbjct: 123 LPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVS 181

Query: 160 RCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG 219
             Y     K  L G+  S   D    +T HH  ++    R P  R G VH YNN   N  
Sbjct: 182 YNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNIT 238

Query: 220 IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQ 277
              +      Q   + N +E      T  Y  +          G    +G+   K A 
Sbjct: 239 GSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNF--------GTWVLKGNNITKPAD 288

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359

 Score =  189 bits (480), Expect = 1e-57
 Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 61/318 (19%)

Query: 15  ALAGQAEGFGRFAIGGLHGPVYFVTN-------LSDDGP--------------------- 46
            + G AEGF     GG      + T        L D+ P                     
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTT 61

Query: 47  ------------------GSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQ 88
                                         + + ++ +G + ++    V+S K+I G+G 
Sbjct: 62  GCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPIT----VNSNKSIVGQGT 117

Query: 89  RIKLTGKGLRL-KECEHVIICNLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYD 143
           +  + GKGLR+    ++VII N+         V   D I +  +S  +WID  +  R   
Sbjct: 118 KGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGR 176

Query: 144 DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG----DRCIRVTIHHCLFDGTRQR 199
             ++  T     +T+S                  + G         VT+    F     R
Sbjct: 177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGR 236

Query: 200 HPRLRFGK-VHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKL 258
            P+++    +H  NN   N+  +A        + ++ N+++            +  +   
Sbjct: 237 MPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPD 296

Query: 259 EAKSGLIRSEGDIFLKGA 276
              +    S      +  
Sbjct: 297 ANTNQQCASVFGRSCQLN 314

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359

 Score =  188 bits (477), Expect = 4e-57
 Identities = 48/277 (17%), Positives = 88/277 (31%), Gaps = 53/277 (19%)

Query: 15  ALAGQAEGFGRFAIGGLHGPVYFVTN-------LSDDGPG-------------------- 47
            ++G AEGF +   GG      +          L DD                       
Sbjct: 2   GVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGT 61

Query: 48  ---------------SLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKL 92
                             + C   EP      V      +  ++V+S K++ G G    +
Sbjct: 62  GCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAI 121

Query: 93  TGKGLRL-KECEHVIICNLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYDDGLI 147
            GKGLR+    E++II N+         V   D I +  +   +WID  +  R      +
Sbjct: 122 KGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQHYV 180

Query: 148 DITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQRHPRL 203
             T     ++++  Y               +    +      VT+       T  R P++
Sbjct: 181 LGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240

Query: 204 RFGK-VHLYNNYTRNWGIYAVCASVESQIYSQCNIYE 239
           +    +H  NNY  +   +A        + ++ N+++
Sbjct: 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQ 277

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416

 Score =  188 bits (478), Expect = 9e-57
 Identities = 80/334 (23%), Positives = 120/334 (35%), Gaps = 45/334 (13%)

Query: 17  AGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS-SYL 75
               +            P +       +   +         PL      S         +
Sbjct: 69  LNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMV 128

Query: 76  SVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGHD 119
            V S  +I G G+  K+ G G  +K  ++VII N+EFE                G    +
Sbjct: 129 YVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSE 188

Query: 120 VDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCY 162
            D I I+  S HIWID  +  D D                 DG +DI   S  IT+S   
Sbjct: 189 YDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNV 247

Query: 163 FTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI- 220
           FT HDK  LIGA  S + D   +RVT+HH  +    QR PR+RFG+VH+YNNY     + 
Sbjct: 248 FTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLA 307

Query: 221 -----YAVCASVESQIYSQCNIYEAG---QKKRTFEYYTEKAADKLEAKSGLIRSEGDIF 272
                YA    V SQIY+Q N +            + +++      E  + +    G  +
Sbjct: 308 DYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPNGRRY 367

Query: 273 LKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSD 306
           +    +   +   +       +      +     
Sbjct: 368 IDLVASYNESNTLQLKKEVTWKPMFYHVIHPTPS 401

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399

 Score =  187 bits (474), Expect = 3e-56
 Identities = 69/332 (20%), Positives = 112/332 (33%), Gaps = 60/332 (18%)

Query: 18  GQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSV 77
            +  G   +         Y               G +                    + +
Sbjct: 70  LKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQE----EARARSQKNQKARVMVDI 125

Query: 78  SSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGHDVD 121
            +  TI G G   K+ G   ++K  ++VII N+EF+                G      D
Sbjct: 126 PANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYD 184

Query: 122 GIQIKPNSRHIWIDRCSLR-----------------DYDDGLIDITRQSTDITVSRCYFT 164
            I I     HIWID C+                    + DG  D +  +  IT+S  Y+ 
Sbjct: 185 NITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243

Query: 165 QHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG---- 219
            HDK+ + G+  S   D   +++T+HH  +    Q  PR+RFG+VH+YNNY         
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSS 303

Query: 220 ---IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 276
               YA      S+IY+Q N+ +                       G    +    L G 
Sbjct: 304 YPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISV--------FSGGTALYDSGTLLNGT 355

Query: 277 QAQLL--TGVGEECVFHPSEYYPTWTMEAPSD 306
           Q       G+     + PS +    +++A ++
Sbjct: 356 QINASAANGLSSSVGWTPSLHG---SIDASAN 384

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 82  TIDGRGQRIKLT--------GKGLRLKECEHVIICNLEFEGGRGH-------------DV 120
           T+DG  +R+              L ++ C +V I ++E      H               
Sbjct: 114 TLDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLG 173

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DG      S +IWI+ C    + D  I     S  I +  CY   HD  +    +   + 
Sbjct: 174 DGTTAPNPSENIWIENCEATGFGDDGITTH-HSQYINILNCYS--HDPRLTANCNGFEID 230

Query: 181 DRCIRVTIHHCLFDGT 196
           D    V + +    G 
Sbjct: 231 DGSRHVVLSNNRSKGC 246

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 97  LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL---------I 147
           +   E  +V+   L  +    ++ DGI+   NS+++ +        DD +          
Sbjct: 357 IMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDDCINFAAGTGEKA 415

Query: 148 DITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197
                     +   YF      ++ G   SH G     +   + +   T 
Sbjct: 416 QEQEPMKGAWLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTD 462

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 29/119 (24%)

Query: 97  LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL---------- 146
           +     E+VII N+E     G + DGI  + + +++ I++C     DD +          
Sbjct: 216 IHPVLSENVIIRNIEISS-TGPNNDGIDPE-SCKYMLIEKCRFDTGDDSVVIKSGRDADG 273

Query: 147 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG-------DRCIR-VTIHHCLFDGTR 197
             I   S  I V                  SH G          +R V   + ++    
Sbjct: 274 RRIGVPSEYILVRDNLVIS---------QASHGGLVIGSEMSGGVRNVVARNNVYMNVE 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	100.0
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	100.0
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	100.0
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	100.0
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	100.0
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	100.0
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	100.0
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	100.0
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	100.0
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	100.0
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	100.0
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	98.76
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	98.74
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	98.73
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.61
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.56
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.55
2inu_A	410	Insulin fructotransferase; right-handed parallel b	98.52
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.44
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.42
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.41
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.41
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	98.39
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.36
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.28
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	98.21
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.19
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.13
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.12
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	98.12
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.07
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	98.02
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	98.0
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	97.97
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	97.94
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.91
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	97.83
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.8
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	97.74
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	97.74
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	97.71
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.64
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.61
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	97.53
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.41
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.41
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	97.36
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	97.26
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	97.13
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	97.13
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	97.09
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	97.07
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.03
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	97.02
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	96.87
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	96.73
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	96.71
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	96.67
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	96.63
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	96.54
2inu_A	410	Insulin fructotransferase; right-handed parallel b	96.19
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	95.91
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	95.77
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	95.52
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	95.32
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	95.18
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	93.39
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	92.39
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	86.96

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-71  Score=535.77  Aligned_cols=287  Identities=30%  Similarity=0.457  Sum_probs=248.2

Q ss_pred             CcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC--ceeEeccceeeeeeccceEEecCc
Q 020121           19 QAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS--SYLSVSSYKTIDGRGQRIKLTGKG   96 (331)
Q Consensus        19 ~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~--~~l~v~sn~TI~G~g~g~~i~G~g   96 (331)
                      .|||||++||||+||++|+|||++|     ||+|+++++||||+  |+|+|+++  ++|.|.+||||+|+|.. +|.|.+
T Consensus        13 ~AeG~g~~ttGG~gG~v~~VTtl~d-----Lr~al~~~~PriIv--v~G~I~~~~~~~l~v~snkTI~G~ga~-~I~G~G   84 (340)
T 3zsc_A           13 PTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIV--VDGTIVFEPKREIKVLSDKTIVGINDA-KIVGGG   84 (340)
T ss_dssp             CCSSCTTSCCTTTTSEEEEECSHHH-----HHHHHTSSSCEEEE--EEEEEEEEEEEEEEECSSEEEEEEEEE-EEEEEE
T ss_pred             cccccCCCCccCCCceEEEeCCHHH-----HHHHHhCCCCEEEE--ECcEEEeCCcceEEecCCCEEEeccCc-EEecCc
Confidence            5899999999999999999999999     99999999999988  68999998  89999999999999887 999999


Q ss_pred             EEEeeeccEEEeeeEEecCC--------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCc
Q 020121           97 LRLKECEHVIICNLEFEGGR--------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK  168 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~--------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k  168 (331)
                      |+|++++|||||||+||++.        ..++|+|+|+ +++|||||||+|+|..||++|+++++++||||||+|++|+|
T Consensus        85 i~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~f~~h~k  163 (340)
T 3zsc_A           85 LVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDK  163 (340)
T ss_dssp             EEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEE-SCEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEESCSB
T ss_pred             eEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEe-cCCcEEEEeeeeccCCccceEEecCCceEEEECcEeccCce
Confidence            99999999999999999863        1278999998 79999999999999999999999899999999999999999


Q ss_pred             eeeecCCCCCC--CC-cceEEEEeceeecCCCCCCcccccCeEEEEcceEec----------cccceeeeccCceEEEEc
Q 020121          169 TMLIGADPSHV--GD-RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN----------WGIYAVCASVESQIYSQC  235 (331)
Q Consensus       169 ~~liG~~~~~~--~d-~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n----------~~~~~~~~~~~a~v~~e~  235 (331)
                      +||+|++|+..  +| +.++||||||||+++.+|+||+|+|++|++||||++          |..|++++++++++++|+
T Consensus       164 ~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~a~i~~E~  243 (340)
T 3zsc_A          164 VSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEG  243 (340)
T ss_dssp             CCEECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEESSEEEEESCEEECCCCCSCSSCCSCCEEEEEETTCEEEEES
T ss_pred             eeEeCcCCCCccccccCCcEEEEECeEecCCCCCCCcccCCeEEEEccEEECCccccccccceeeeeEecCCCCEEEEEC
Confidence            99999988652  34 348999999999999999999999999999999999          999999999999999999


Q ss_pred             eEEecCCc-----ceeeeeeeccccCccccCccEEEEcC----CeEEcCcccccccCcccceeecCCCCCCCCccCCchH
Q 020121          236 NIYEAGQK-----KRTFEYYTEKAADKLEAKSGLIRSEG----DIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSD  306 (331)
Q Consensus       236 N~f~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~----n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~  306 (331)
                      |||++...     ..++.+..     ..++..|||...+    |.|.++........+....+|.|.++|+ |++++|+ 
T Consensus       244 N~F~~~~~~~~~~~~~~p~~~-----~~~~~~G~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~pY~-Y~l~~a~-  316 (340)
T 3zsc_A          244 NYFMGYGAVMAEAGIAFLPTR-----IMGPVEGYLTLGEGDAKNEFYYCKEPEVRPVEEGKPALDPREYYD-YTLDPVQ-  316 (340)
T ss_dssp             CEEECSCHHHHHTTCCBEEEE-----ECTTTBCEEEECCGGGCCEEESBCCCCCBCSSTTSCSCCGGGTCC-CCCCCGG-
T ss_pred             cEEECCCcccccccccccccc-----cCCCCceEEEecCcccceeeccCCCCccccccCCccccccCCCce-eecCcHH-
Confidence            99999865     11122211     1235789999999    9998865432111011234566666685 9999995 


Q ss_pred             HHHHHHHhcccCCCc
Q 020121          307 SLKQILQICTGWQSI  321 (331)
Q Consensus       307 a~~~~v~~~AG~~~~  321 (331)
                      +||++|.++||+.+.
T Consensus       317 ~v~~~V~~~AG~gk~  331 (340)
T 3zsc_A          317 DVPKIVVDGAGAGKL  331 (340)
T ss_dssp             GHHHHHHHHCSTTCC
T ss_pred             HhhHHHhhcCCCCee
Confidence            799999999999985

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=100.00  E-value=3e-71  Score=536.51  Aligned_cols=302  Identities=34%  Similarity=0.513  Sum_probs=257.5

Q ss_pred             ccccccCCCcccccCCCCCCCCCceEEecCCCCC----CCchHHHHhhcCCCeEEEEEeeeEEEeCceeEeccceeeeee
Q 020121           11 SCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGR   86 (331)
Q Consensus        11 ~~~~~~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~----g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~   86 (331)
                      ..++++++||||||++||||+||++|+||+|+|+    +|||||+||++++||+|||+++|+|+|+++|.|.++|||+|+
T Consensus        16 ~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~   95 (346)
T 1pxz_A           16 QNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGR   95 (346)
T ss_dssp             TCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECT
T ss_pred             hhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEcc
Confidence            4567777899999999999999999999999998    899999999999999999999999999999999999999999


Q ss_pred             ccceEEec--CcEEEeeeccEEEeeeEEecCC-------------------CCCCCceEEcCCCceEEEeeeeeecCCCC
Q 020121           87 GQRIKLTG--KGLRLKECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDG  145 (331)
Q Consensus        87 g~g~~i~G--~gi~i~~~~NVIIrnL~i~~g~-------------------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg  145 (331)
                      |..++|.|  .+|+|++++|||||||+|+...                   ..++|||.|+ ++++||||||+|+|..||
T Consensus        96 ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg  174 (346)
T 1pxz_A           96 GADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDG  174 (346)
T ss_dssp             TSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSE
T ss_pred             CCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCCC
Confidence            99999997  5899999999999999999642                   2578999998 899999999999999999


Q ss_pred             eeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceee-cCCCCCCcccccCeEEEEcceEeccccceee
Q 020121          146 LIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVC  224 (331)
Q Consensus       146 ~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f-~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~  224 (331)
                      ++|+++.+++||||||+|++|+|++|||++|+...|+.++||||||+| +++.+|+||+|+|++|++||||++|+.|+++
T Consensus       175 ~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~  254 (346)
T 1pxz_A          175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG  254 (346)
T ss_dssp             EEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEE
T ss_pred             cEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEe
Confidence            999998999999999999999999999999887777789999999999 9999999999999999999999999999999


Q ss_pred             eccCceEEEEceEEecCCcc---eeeeeeeccccCccccCccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCcc
Q 020121          225 ASVESQIYSQCNIYEAGQKK---RTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM  301 (331)
Q Consensus       225 ~~~~a~v~~e~N~f~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~  301 (331)
                      .++++++++|+|||++++.+   .+...+..  ........++|+++++.|+||+.............|.++  | .|++
T Consensus       255 ~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~--~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~y~~~--~-~~~~  329 (346)
T 1pxz_A          255 GSSNPTILSEGNSFTAPSESYKKEVTKRIGC--ESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSN--E-AFKV  329 (346)
T ss_dssp             EESCCEEEEESCEEECCSCGGGCBSEEECSC--SCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTT--T-CCCC
T ss_pred             ccCCceEEEECCEEECCCCCcccccEEEecc--CCccccccccEecCCCeEEeceEecCCCCCccCCCCCcc--c-cccc
Confidence            99999999999999998753   22222110  000111345799999999999876321111111123333  4 3789


Q ss_pred             CCchHHHHHHHHhcccCCC
Q 020121          302 EAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       302 ~~A~~a~~~~v~~~AG~~~  320 (331)
                      ++|+ +|+.+ .++||++.
T Consensus       330 ~~~~-~v~~~-~~~aG~~~  346 (346)
T 1pxz_A          330 ENGN-AAPQL-TKNAGVVT  346 (346)
T ss_dssp             CCGG-GHHHH-TTTCSSCC
T ss_pred             CCHH-HHHHH-hhhccCCC
Confidence            9996 68877 66999863

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=100.00  E-value=1.8e-71  Score=532.91  Aligned_cols=287  Identities=25%  Similarity=0.423  Sum_probs=247.2

Q ss_pred             CcccccC---CCCCCCCCceEEecCCCCCCCchHHHHhh-------cCCCeEEEEEeeeEEEeC----ceeEec------
Q 020121           19 QAEGFGR---FAIGGLHGPVYFVTNLSDDGPGSLREGCR-------RREPLWIVFEVSGTIHLS----SYLSVS------   78 (331)
Q Consensus        19 ~a~Gfg~---~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~-------~~~pr~Ivf~v~G~I~l~----~~l~v~------   78 (331)
                      +|+|||+   +||||+||++|+||||+|     ||+||+       +++||+|+  |+|+|+|+    ++|.|.      
T Consensus         3 ~~~Gfa~~nggTtGG~gG~vv~Vttl~d-----L~~Al~~~~~~~~~~~p~iI~--V~G~I~l~~~~~~~i~v~~~~~~~   75 (326)
T 3vmv_A            3 GPQGYASMNGGTTGGAGGRVEYASTGAQ-----IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVKNHRGKA   75 (326)
T ss_dssp             CCSGGGGSTTCCCTTTTSEEEEESSHHH-----HHHHHHHHHHSSCTTSCEEEE--ECSEEESTTCSSSSEEESCTTCTT
T ss_pred             CCceeeecCCCCccCCCCeEEEECCHHH-----HHHHHhhcccccCCCCCEEEE--EeeEEecCCCCCceEEEecccccc
Confidence            5899999   599999999999999999     999999       88999887  99999998    789998      


Q ss_pred             ---cceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC---------CCCe
Q 020121           79 ---SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY---------DDGL  146 (331)
Q Consensus        79 ---sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~---------~Dg~  146 (331)
                         +||||+|+|.+++|.|.+|+|++++|||||||+|+....+++|+|+|+..++|||||||+|+|.         .||+
T Consensus        76 ~~~sn~TI~G~g~~~~i~G~gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl  155 (326)
T 3vmv_A           76 HEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGL  155 (326)
T ss_dssp             SCEEEEEEEECTTCCEEESCCEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCS
T ss_pred             cCCCCeEEEecCCCeEEeCcEEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcc
Confidence               9999999999999999999999999999999999998878899999983389999999999975         4999


Q ss_pred             eeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeec
Q 020121          147 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCAS  226 (331)
Q Consensus       147 ~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~  226 (331)
                      +|+++++++||||||+|++|+|++|||++|+... .+.+||||||||+++.+|+||+|+|++|++||||++|..|++..+
T Consensus       156 ~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~-~~~~vT~~~N~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~  234 (326)
T 3vmv_A          156 VDMKRNAEYITVSWNKFENHWKTMLVGHTDNASL-APDKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSR  234 (326)
T ss_dssp             EEECTTCEEEEEESCEEEEEEECEEECSSSCGGG-CCEEEEEESCEEEEEEECTTEEESCEEEEESCEEEEESSCSEEEE
T ss_pred             eEecCCCceEEEEceEEecCceEEEECCCCCCcc-cCccEEEEeeEecCCcCcCCcccCCcEEEEccEEECCCceEEeec
Confidence            9999999999999999999999999999876432 135999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEceEEecCCccee---eeeeecc-ccCccccCccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccC
Q 020121          227 VESQIYSQCNIYEAGQKKRT---FEYYTEK-AADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTME  302 (331)
Q Consensus       227 ~~a~v~~e~N~f~~~~~~~~---~~~~~~~-~~~~~~~~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~  302 (331)
                      +++++++|+|||+++....+   ......+ ....+++..|++...+|.|+|+....    ..+...|+|+  |+ |+++
T Consensus       235 ~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~n~~~n~~~~~----~~~~~~~~p~--Y~-y~l~  307 (326)
T 3vmv_A          235 VGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPNSH----LNSTTNFTPP--YS-YQVQ  307 (326)
T ss_dssp             TTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSCSSSBCEEEEESCEEESSCCTT----CCCCCCCCCS--SC-CCCC
T ss_pred             CCcEEEEEceEEECCcCccccccccccccceeeccCCCCceEEEEECCeEccCcCcc----cCCCcccccc--Ce-eecC
Confidence            99999999999999821100   0000000 00123567899999999999874321    3456789987  64 8999


Q ss_pred             CchHHHHHHHHhcccCCCc
Q 020121          303 APSDSLKQILQICTGWQSI  321 (331)
Q Consensus       303 ~A~~a~~~~v~~~AG~~~~  321 (331)
                      +|+ +||++|.++||+.++
T Consensus       308 ~a~-~V~~~V~~~AG~Gk~  325 (326)
T 3vmv_A          308 SAT-QAKSSVEQHSGVGVI  325 (326)
T ss_dssp             CHH-HHHHHHHHHCSSSSC
T ss_pred             CHH-HhhHHHhccCCCccc
Confidence            995 799999999999874

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=100.00  E-value=2.6e-68  Score=513.27  Aligned_cols=281  Identities=23%  Similarity=0.289  Sum_probs=241.7

Q ss_pred             CcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhc---CCCeEEEEEeeeEEEeCc---------------eeEeccc
Q 020121           19 QAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRR---REPLWIVFEVSGTIHLSS---------------YLSVSSY   80 (331)
Q Consensus        19 ~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~---~~pr~Ivf~v~G~I~l~~---------------~l~v~sn   80 (331)
                      +|||||++||||+||++|+|||++|     ||+||++   ++||||+|  +|+|++.+               +|++.+|
T Consensus         1 ga~Gfa~~ttGG~gg~~~~Vtt~~~-----L~~al~~~~~~~p~iI~~--~G~i~~~~~~~~c~~~~~~~~~~~l~v~sn   73 (330)
T 2qy1_A            1 GPVGYGAGTTGGGNKVPVNVATFEA-----MQSAIDSYSGSGGLVLNY--TGKFDFGTIKDVCAQWKLPAKTVQIKNKSD   73 (330)
T ss_dssp             CCCSTTTTCCTTTTSCCEEECSHHH-----HHHHHHHSCSSSCEEEEE--CCBCCGGGCCCGGGSTTSCCCEEEEESCCS
T ss_pred             CCceeecCCCCCCCceEEEcCCHHH-----HHHHHhccCCCCCEEEEE--ccEEecccccccccccccccceeEEEcCCC
Confidence            5999999999999999999999997     9999985   89999996  89999985               7888999


Q ss_pred             eeeeeeccceEEecCcEEEe-eeccEEEeeeEEecCCC-CCCCceEEcC----CCceEEEeeeeeecCC-----------
Q 020121           81 KTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGGRG-HDVDGIQIKP----NSRHIWIDRCSLRDYD-----------  143 (331)
Q Consensus        81 ~TI~G~g~g~~i~G~gi~i~-~~~NVIIrnL~i~~g~~-~~~D~I~i~~----~~~nVwIDHcs~s~~~-----------  143 (331)
                      |||+|+  +++|.|.+|+|+ +++|||||||+|+.... +++|+|+|+.    .++|||||||+|+|..           
T Consensus        74 ~TI~G~--~a~i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~  151 (330)
T 2qy1_A           74 VTIKGA--NGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASF  151 (330)
T ss_dssp             EEEEEC--TTCBBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSS
T ss_pred             eEEECC--CcEEeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCccee
Confidence            999886  457899999998 89999999999998753 4789999984    5899999999999876           


Q ss_pred             CCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEecccccee
Q 020121          144 DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAV  223 (331)
Q Consensus       144 Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~  223 (331)
                      ||++|+++++++||||||+|++|+|++|+|++|+...++.++||||||||+++.+|+||+|+|++|++||||++|..|++
T Consensus       152 Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~i  231 (330)
T 2qy1_A          152 DGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGI  231 (330)
T ss_dssp             CCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGCEEEEESCEEEEEEECTTEEESSEEEEESCEEEEECSCSE
T ss_pred             ecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCceEEEECcEEcCCCCCCCceecceEEEEeeEEEcccceEe
Confidence            99999999999999999999999999999999887666668999999999999999999999999999999999999999


Q ss_pred             eeccCceEEEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEc--Ccccccc--------cCcccceeecCC
Q 020121          224 CASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLK--GAQAQLL--------TGVGEECVFHPS  293 (331)
Q Consensus       224 ~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~n--g~~~~~~--------~~~~~~~~~~p~  293 (331)
                      ++++++++++|+|||++++.+...+         +.+..|+|..++| |++  +......        ..+.+...|+|+
T Consensus       232 ~~~~~~~i~~e~N~F~~~~~p~~~~---------~~~~~g~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (330)
T 2qy1_A          232 NVRMGGIAKIESNYFENIKNPVTSR---------DSSEIGYWDLINN-YVGSGITWGTPDGSKPYANATNWISTKVFPES  301 (330)
T ss_dssp             EEETTCEEEEESCEEEEEESSEEEC---------SSSSBCEEEEESC-EECSCEECCCCSSSSCCEECTTCCCSSCCCSC
T ss_pred             ccCCCcEEEEEccEEECCCCceeec---------cCCCceeEEEeCC-cccccccccccCcccccccccccCcccccccC
Confidence            9999999999999999876543221         2246688999999 887  3221100        011233567766


Q ss_pred             CCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          294 EYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       294 ~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      +.|+ |++++|+ +||+.|.++||+..
T Consensus       302 ~~Y~-y~~~~a~-~V~~~V~~~AGag~  326 (330)
T 2qy1_A          302 LGYI-YTVTPAA-QVKAKVIATAGAGK  326 (330)
T ss_dssp             CCSC-CCCCCGG-GHHHHHHHHCSTTS
T ss_pred             CCce-eeeCCHH-HHHHhhHhccCCCc
Confidence            6675 8999996 69999999999986

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=100.00  E-value=1.5e-65  Score=498.21  Aligned_cols=282  Identities=26%  Similarity=0.451  Sum_probs=230.7

Q ss_pred             CcccccC---CCCCCCCC---ceEEecCCCCCCCchHHHHh-hcCCCeEEEEEeeeEEEeCc--------------eeEe
Q 020121           19 QAEGFGR---FAIGGLHG---PVYFVTNLSDDGPGSLREGC-RRREPLWIVFEVSGTIHLSS--------------YLSV   77 (331)
Q Consensus        19 ~a~Gfg~---~ttGG~gg---~vv~Vt~l~d~g~GsLr~ai-~~~~pr~Ivf~v~G~I~l~~--------------~l~v   77 (331)
                      +++|||+   +||||++|   +||+|||++|     ||+|| ++++||+|  .|+|+|++.+              +|.|
T Consensus        13 ~~~Gfa~~~~gtTGG~~g~~~~v~~Vtt~~d-----L~~al~~~~~p~vI--~V~GtI~~~~~~~~~s~~~~~~~~~l~v   85 (361)
T 1pe9_A           13 PTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKII--QIKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEE--EECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             CCCceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhcCCCcEEE--EECCEEecCCccccccccccccceeEEe
Confidence            3899995   89999998   7899999999     99999 89999976  4899999975              6888


Q ss_pred             ccceeeeeeccceEEecCcEEE---eeeccEEEeeeEEecCCC------------CCCCceEEcCC-CceEEEeeeeeec
Q 020121           78 SSYKTIDGRGQRIKLTGKGLRL---KECEHVIICNLEFEGGRG------------HDVDGIQIKPN-SRHIWIDRCSLRD  141 (331)
Q Consensus        78 ~sn~TI~G~g~g~~i~G~gi~i---~~~~NVIIrnL~i~~g~~------------~~~D~I~i~~~-~~nVwIDHcs~s~  141 (331)
                      .|||||+|+|.+++|.|.+|+|   ++++|||||||+|+.+..            .++|+|+|+ + ++|||||||+|+|
T Consensus        86 ~snkTI~G~G~~~~i~g~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~-~~s~nVWIDHcs~s~  164 (361)
T 1pe9_A           86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNIT-NGAHHVWIDHVTISD  164 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEE-TTCEEEEEESCEEEC
T ss_pred             cCCcEEEccCCCeEEecCEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEee-cCCceEEEEccEeec
Confidence            9999999999999999999999   789999999999997531            458999998 6 9999999999999


Q ss_pred             C-----------------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCC-CC-cceEEEEeceeecCCCCCCcc
Q 020121          142 Y-----------------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV-GD-RCIRVTIHHCLFDGTRQRHPR  202 (331)
Q Consensus       142 ~-----------------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~-~d-~~~~vT~hhN~f~~~~~R~Pr  202 (331)
                      +                 .||+||+++++++||||||+|++|+|++|||++|+.. +| +.++||||||||+|+.+|+||
T Consensus       165 ~~~~~~~~~~~~G~~~~~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr  244 (361)
T 1pe9_A          165 GNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPR  244 (361)
T ss_dssp             TTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSE
T ss_pred             ccccccccccccCcceeeccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcCccccCcc
Confidence            6                 6999999999999999999999999999999998754 44 458999999999999999999


Q ss_pred             cccCeEEEEcceEec---cc----cceeeeccCceEEEEceEEecCCcc--eeeeeeeccccCccccCccEEEEcCCeEE
Q 020121          203 LRFGKVHLYNNYTRN---WG----IYAVCASVESQIYSQCNIYEAGQKK--RTFEYYTEKAADKLEAKSGLIRSEGDIFL  273 (331)
Q Consensus       203 ~r~G~~hv~NN~~~n---~~----~~~~~~~~~a~v~~e~N~f~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~n~~~  273 (331)
                      +|+|++|+|||||++   |+    .|+++.++++++++|+|||++++.+  .....+.       ......+...+| ++
T Consensus       245 ~R~G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~-------~~~~~~~~~~gn-~~  316 (361)
T 1pe9_A          245 VRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVK-------KFNGSIFSDNGS-VL  316 (361)
T ss_dssp             ESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEE-------ESSCCEEEEESC-EE
T ss_pred             cccceEEEEcceEecccCCCccccceEecCCCCcEEEEECCEEECCCCccccCceeEE-------ecCCcEEEecCc-cc
Confidence            999999999999975   44    6899999999999999999998432  0000000       011112455666 44


Q ss_pred             cCcccccccCcccceeecCCCCCCCCcc-CCchHHHHHHHHhcccCCC
Q 020121          274 KGAQAQLLTGVGEECVFHPSEYYPTWTM-EAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       274 ng~~~~~~~~~~~~~~~~p~~~y~~y~~-~~A~~a~~~~v~~~AG~~~  320 (331)
                      +|+..... +. ....|.|...|+ |++ ++| ++||++|.++|||..
T Consensus       317 ~g~~~~~~-~~-g~~~~~~~~~y~-y~~~~~a-~~V~~~V~~~AGag~  360 (361)
T 1pe9_A          317 NGSAVDLS-GC-GFSAYTSKIPYI-YDVQPMT-TELAQSITDNAGSGK  360 (361)
T ss_dssp             TTEECCCT-TS-SCBCCCSCCCSC-CCCCCCC-HHHHHHHHHHCSTTC
T ss_pred             cCcCcccC-CC-CccccccCCCCc-cccCCcH-HHHHHHHHhccCCCc
Confidence            77644321 11 124677765675 755 456 579999999999975

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=100.00  E-value=7.8e-65  Score=492.74  Aligned_cols=292  Identities=27%  Similarity=0.418  Sum_probs=231.9

Q ss_pred             cCCCcccccC---CCCCCCCCc-eEEecCCCCCCCchHHHHh--hcCCCeEEEEEeeeEEEeCc--------------ee
Q 020121           16 LAGQAEGFGR---FAIGGLHGP-VYFVTNLSDDGPGSLREGC--RRREPLWIVFEVSGTIHLSS--------------YL   75 (331)
Q Consensus        16 ~~~~a~Gfg~---~ttGG~gg~-vv~Vt~l~d~g~GsLr~ai--~~~~pr~Ivf~v~G~I~l~~--------------~l   75 (331)
                      ...+++|||+   +||||++|+ +|+||||+|     ||+||  ++++||+  |.|+|+|++.+              +|
T Consensus         4 ~~~~~~G~a~~~~gtTGG~~g~~v~~Vtt~~~-----L~~al~~~~~~p~V--I~V~GtI~~~~~~~~~s~~~~~~~~~l   76 (355)
T 1pcl_A            4 TDAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKI--IKVTGPIDISGGKAYTSFDDQKARSQI   76 (355)
T ss_pred             cccCCcceeecCCCCccCCCCceEEEeCCHHH-----HHHHHhhCCCCcEE--EEECCEEecCCccccccccccccceeE
Confidence            3456899998   799999998 699999999     99999  7889995  55999999974              68


Q ss_pred             EeccceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC------------CCCCCceEEcCCCceEEEeeeeeecC-
Q 020121           76 SVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDY-  142 (331)
Q Consensus        76 ~v~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~------------~~~~D~I~i~~~~~nVwIDHcs~s~~-  142 (331)
                      +|.|||||+|+|.+++|.|.+|+|++++|||||||+|+.+.            ..++|+|.|+ +++|||||||+|+|+ 
T Consensus        77 ~v~sn~TI~G~G~~~~i~g~gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~-~s~nVWIDH~s~s~~~  155 (355)
T 1pcl_A           77 SIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGS  155 (355)
T ss_pred             EeCCCeEEEEecCCeEEecCEEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEec-CCCcEEEEeeEEeccc
Confidence            88999999999999999999999999999999999999752            1358999997 899999999999996 


Q ss_pred             ----------------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCC-CC-cceEEEEeceeecCCCCCCcccc
Q 020121          143 ----------------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV-GD-RCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       143 ----------------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~-~d-~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                                      .||++|+++++++||||||+|++|+|++|||++|+.. +| +.++||||||||.++.+|+||+|
T Consensus       156 ~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR  235 (355)
T 1pcl_A          156 FTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVR  235 (355)
T ss_pred             cCccccccccCccccccccceeeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCcee
Confidence                            6999999999999999999999999999999998764 56 45899999999999999999999


Q ss_pred             cCeEEEEcceEecc---c----cceeeeccCceEEEEceEEecCCcceeeeeeeccccCccccCccE-EEEcCCeEEcCc
Q 020121          205 FGKVHLYNNYTRNW---G----IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGL-IRSEGDIFLKGA  276 (331)
Q Consensus       205 ~G~~hv~NN~~~n~---~----~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~n~~~ng~  276 (331)
                      +|++|+|||||+++   +    .|+++.++++++++|+|||++++.+.+.....  .....+...+. +...+ .+++|+
T Consensus       236 ~G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g-n~~~g~  312 (355)
T 1pcl_A          236 FGSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNP--ECSIVKQFNSKVFSDKG-SLVNGS  312 (355)
T ss_pred             cceEEEEcceEEcccCCCccccceEecCCCCcEEEEEccEEECCCccccccccc--cccccccccCceEEecC-ccccCc
Confidence            99999999999754   4    68899999999999999999984322211100  00000111222 34444 466766


Q ss_pred             ccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          277 QAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       277 ~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      ...... .....+|.|...|+ |+++.+.++|+++|.++|||..
T Consensus       313 ~~~~~~-~~~~~~~~~~~~y~-y~~~~~a~~v~~~V~~~AGag~  354 (355)
T 1pcl_A          313 TTTKLD-TCGLTAYKPTLPYK-YSAQTMTSSLATSINNNAGYGK  354 (355)
T ss_pred             Cccccc-cCCccccccCCCCC-ccCCCcHHHHHHHHHhccCCCC
Confidence            541111 11224666654564 7554433589999999999975

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=100.00  E-value=6e-65  Score=501.85  Aligned_cols=289  Identities=33%  Similarity=0.503  Sum_probs=238.2

Q ss_pred             cccccCCCcccccC---CCCCCCCCc---eEEecCCCCCCCchHHHHhhcC--------CCeEEEEEeeeEEEeCc----
Q 020121           12 CLRALAGQAEGFGR---FAIGGLHGP---VYFVTNLSDDGPGSLREGCRRR--------EPLWIVFEVSGTIHLSS----   73 (331)
Q Consensus        12 ~~~~~~~~a~Gfg~---~ttGG~gg~---vv~Vt~l~d~g~GsLr~ai~~~--------~pr~Ivf~v~G~I~l~~----   73 (331)
                      ..++||. |+|||+   +||||++|+   ||+|||++|     |++||++.        +||+|+  |+|+|++.+    
T Consensus         4 ~~~~~~~-~~GfA~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~~~~~~priI~--V~GtId~~~~~~g   75 (416)
T 1vbl_A            4 GHEVLKP-YDGWAAYGEGTTGGAMASPQNVFVVTNRTE-----LIQALGGNNHTNQYNSVPKIIY--VKGTIDLNVDDNN   75 (416)
T ss_dssp             GGCCCCT-TSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHTTSCTTGGGGCCSCEEEE--ECSEEESSBCTTS
T ss_pred             cccccCC-CcceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhccccccccCCCCEEEE--ECCEEecccCCCC
Confidence            4556666 999999   899999996   899999999     99999864        899887  899999852    


Q ss_pred             ---------------------------------------------------eeEeccceeeeeeccceEEecCcEEEeee
Q 020121           74 ---------------------------------------------------YLSVSSYKTIDGRGQRIKLTGKGLRLKEC  102 (331)
Q Consensus        74 ---------------------------------------------------~l~v~sn~TI~G~g~g~~i~G~gi~i~~~  102 (331)
                                                                         +|.|.|||||+|+|.+++|.|.+|+|+++
T Consensus        76 ~~~~c~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~~  155 (416)
T 1vbl_A           76 QPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIKNV  155 (416)
T ss_dssp             CBCCHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEECTTCCEEESCEEEEESC
T ss_pred             ccccccccccCCcchhhhhhhhCccccccccCCCCcccccccccccccceeEEEeCCCeeEEecCCCeEEecCEEEeecC
Confidence                                                               57888999999999999999999999999


Q ss_pred             ccEEEeeeEEecCC----------------CCCCCceEEcCCCceEEEeeeeeecC-----------------CCCeeee
Q 020121          103 EHVIICNLEFEGGR----------------GHDVDGIQIKPNSRHIWIDRCSLRDY-----------------DDGLIDI  149 (331)
Q Consensus       103 ~NVIIrnL~i~~g~----------------~~~~D~I~i~~~~~nVwIDHcs~s~~-----------------~Dg~~di  149 (331)
                      +|||||||+|+.+.                ..+.|+|+|. +++|||||||+|+|+                 .||++|+
T Consensus       156 ~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~Di  234 (416)
T 1vbl_A          156 DNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDI  234 (416)
T ss_dssp             EEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEE
T ss_pred             ceEEEeCeEEEcCccccccccccccccccccCCCceEEec-CCceEEEEccEEecCCCcccccccccCcceeecccceee
Confidence            99999999999752                1367999997 899999999999986                 5999999


Q ss_pred             ecCCceEEEeccEEeccCceeeecCCCCCCCCc-ceEEEEeceeecCCCCCCcccccCeEEEEcceEeccc------cce
Q 020121          150 TRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR-CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG------IYA  222 (331)
Q Consensus       150 ~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~-~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~------~~~  222 (331)
                      ++++++||||||+|++|+|++|||++|+...|+ .++||||||||.++.+|+||+|+|++|+|||||+++.      .|+
T Consensus       235 ~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~ya  314 (416)
T 1vbl_A          235 KNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYA  314 (416)
T ss_dssp             ESSCEEEEEESCEEEEEEECCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEEECTTSSSCCCCS
T ss_pred             ecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCCceEEEEECcEecCCccCCcccccceEEEEcceEECCCCCcccceeE
Confidence            999999999999999999999999998876665 4899999999999999999999999999999999753      389


Q ss_pred             eeeccCceEEEEceEEecCCcc---eeeeeeeccccCccccCccEEEEcCCeEE--cC-ccccc--------ccCcccce
Q 020121          223 VCASVESQIYSQCNIYEAGQKK---RTFEYYTEKAADKLEAKSGLIRSEGDIFL--KG-AQAQL--------LTGVGEEC  288 (331)
Q Consensus       223 ~~~~~~a~v~~e~N~f~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~n~~~--ng-~~~~~--------~~~~~~~~  288 (331)
                      ++.++++++++|+|||++++..   .+...+        +.....+...+|.+.  +| ....+        ..+..+..
T Consensus       315 ~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~--------~~~~~~~~~~gn~~~~~ng~~~~d~~~~~n~~~~~~~~~~~  386 (416)
T 1vbl_A          315 WGVGVFSQIYAQNNYFSFDWDIDPSLIIKVW--------SKNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEV  386 (416)
T ss_dssp             EEEETTCEEEEESCEEEESSCCCGGGSEEEE--------CSSCCEEEEESCEEEETTEEEECCHHHHHHHHCSSCCEECC
T ss_pred             eccCCCcEEEEECCEEECCCCCCccceeeee--------ccCCceEEecCCEEeecCCCcccccccccccCCcccccCCc
Confidence            9999999999999999988532   121111        112335667788886  34 21111        01122334


Q ss_pred             eecCCCCCCCCccCCchHHHHHHHHhcccCCCc
Q 020121          289 VFHPSEYYPTWTMEAPSDSLKQILQICTGWQSI  321 (331)
Q Consensus       289 ~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~~  321 (331)
                      .|.|+  |+ |++++|+ +||++|.++||+...
T Consensus       387 ~~~P~--~~-y~~~~a~-~V~~~V~~~AGag~l  415 (416)
T 1vbl_A          387 TWKPM--FY-HVIHPTP-SVPALVKAKAGAGNL  415 (416)
T ss_dssp             SCCCC--CC-SCCCCGG-GHHHHHHHHCSTTCC
T ss_pred             ccCCc--cc-cccCCHH-HHHHHHhhccCCCcc
Confidence            57766  32 7899996 799999999999763

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=100.00  E-value=2.3e-64  Score=495.63  Aligned_cols=286  Identities=29%  Similarity=0.513  Sum_probs=235.2

Q ss_pred             cccccCCCcccccC---CCCCCCCCc---eEEecCCCCCCCchHHHHh---hcCCCeEEEEEeeeEEEeCc---------
Q 020121           12 CLRALAGQAEGFGR---FAIGGLHGP---VYFVTNLSDDGPGSLREGC---RRREPLWIVFEVSGTIHLSS---------   73 (331)
Q Consensus        12 ~~~~~~~~a~Gfg~---~ttGG~gg~---vv~Vt~l~d~g~GsLr~ai---~~~~pr~Ivf~v~G~I~l~~---------   73 (331)
                      ..+.|+. |+|||+   +||||++|+   ||+|||++|     |++||   ++++||+|+  |+|+|++.+         
T Consensus         4 ~~~~~~~-a~Gfa~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~priI~--v~GtId~~~~~~g~~~~c   75 (399)
T 2o04_A            4 GHQTLGS-NDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPLGL   75 (399)
T ss_dssp             TTCCCCT-TSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBCCH
T ss_pred             cccccCC-CcceeecCCCCcCCCCCccceEEEeCCHHH-----HHHHHHhccCCCCEEEE--EcCEEecccCCccccccc
Confidence            4456666 999999   899999997   899999999     99999   889999887  899999741         


Q ss_pred             ----------------------------------------------eeEeccceeeeeeccceEEecCcEEEeeeccEEE
Q 020121           74 ----------------------------------------------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVII  107 (331)
Q Consensus        74 ----------------------------------------------~l~v~sn~TI~G~g~g~~i~G~gi~i~~~~NVII  107 (331)
                                                                    +|.|.|||||+|+|.+++|.|.+|+|+. +||||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~-~NVII  154 (399)
T 2o04_A           76 NDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNVII  154 (399)
T ss_dssp             HHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEESSSCCEEESCEEEECS-EEEEE
T ss_pred             cccccCCcchhhhhhcccccccccccCCCcccccccccccccccceEEEeCCCceEEeccCCeEEeeCEEEeeC-CCEEE
Confidence                                                          5778999999999999999999999997 99999


Q ss_pred             eeeEEecCC----------------CCCCCceEEcCCCceEEEeeeeeecC-----------------CCCeeeeecCCc
Q 020121          108 CNLEFEGGR----------------GHDVDGIQIKPNSRHIWIDRCSLRDY-----------------DDGLIDITRQST  154 (331)
Q Consensus       108 rnL~i~~g~----------------~~~~D~I~i~~~~~nVwIDHcs~s~~-----------------~Dg~~di~~~s~  154 (331)
                      |||+|+.+.                ..+.|+|+|. +++|||||||+|+|+                 .||+||++++++
T Consensus       155 rnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~  233 (399)
T 2o04_A          155 RNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGAN  233 (399)
T ss_dssp             ESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCE
T ss_pred             eCeEEecCccccccccccccccccccCCCCeEEec-CCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCC
Confidence            999999752                1367999997 899999999999996                 599999999999


Q ss_pred             eEEEeccEEeccCceeeecCCCCCCCCc-ceEEEEeceeecCCCCCCcccccCeEEEEcceEeccc-------cceeeec
Q 020121          155 DITVSRCYFTQHDKTMLIGADPSHVGDR-CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG-------IYAVCAS  226 (331)
Q Consensus       155 ~vTiS~n~f~~h~k~~liG~~~~~~~d~-~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~-------~~~~~~~  226 (331)
                      +||||||+|++|+|++|||++|+...|+ .++||||||||+++.+|+||+|+|++|+|||||++|.       .|+++.+
T Consensus       234 ~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~vT~h~N~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~~ya~g~~  313 (399)
T 2o04_A          234 YITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIG  313 (399)
T ss_dssp             EEEEESCEEEEEEECCEESCCTTCGGGTTCCCEEEESCEEEEEEECTTEESSCEEEEESCEEECCTTCSSSCCCCSEEEC
T ss_pred             cEEEEeeEEcCCCceeEeCCCCCCccccCceeEEEECcEecCCcccCCCcccceEEEEcceEECCCCCCccceeeEeccC
Confidence            9999999999999999999998876664 5899999999999999999999999999999999874       3889999


Q ss_pred             cCceEEEEceEEecCCcc--eeeeeeeccccCccccCccEEEEcCCeEEcCcccccc--cCcccceeecCCCCCCCCccC
Q 020121          227 VESQIYSQCNIYEAGQKK--RTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLL--TGVGEECVFHPSEYYPTWTME  302 (331)
Q Consensus       227 ~~a~v~~e~N~f~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~~--~~~~~~~~~~p~~~y~~y~~~  302 (331)
                      +++++++|+|||+++..+  .+...+        + ....+...+|.+ +|+...+.  ........|+|+++   |+++
T Consensus       314 ~~~~i~~e~N~F~~~~~~~~~~~~~~--------s-~~~~~~~~gn~~-~g~~~d~~~~~~~~~~~~~~p~~~---y~~~  380 (399)
T 2o04_A          314 KSSKIYAQNNVIDVPGLSAAKTISVF--------S-GGTALYDSGTLL-NGTQINASAANGLSSSVGWTPSLH---GSID  380 (399)
T ss_dssp             TTCEEEEESCEEECTTCCSGGGEEEC--------T-TCCBCEEESCEE-TTEECCHHHHTTCBSCCSCCCCCC---CCCC
T ss_pred             CCcEEEEEceEEECCCCCccceeeec--------c-CCceEEEeCcee-cCcccccccccccCCCcccCCccc---cccC
Confidence            999999999999997322  122111        0 111234566655 44332211  11233456777742   6889


Q ss_pred             CchHHHHHHHHhcccCCCc
Q 020121          303 APSDSLKQILQICTGWQSI  321 (331)
Q Consensus       303 ~A~~a~~~~v~~~AG~~~~  321 (331)
                      +|+ +|+++|.++|||...
T Consensus       381 ~a~-~V~~~V~~~AGag~l  398 (399)
T 2o04_A          381 ASA-NVKSNVINQAGAGKL  398 (399)
T ss_dssp             CHH-HHHHHHHHHCSTTSC
T ss_pred             CHH-HHHHhHHhcCCCCcc
Confidence            985 799999999999863

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=100.00  E-value=3.6e-61  Score=467.68  Aligned_cols=284  Identities=19%  Similarity=0.200  Sum_probs=226.6

Q ss_pred             ccCCCcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC----------------------
Q 020121           15 ALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS----------------------   72 (331)
Q Consensus        15 ~~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~----------------------   72 (331)
                      +++++|+|||++||||++|++|+|||++|     ||+||++++||+|+|  +|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~~g~~~~Vtt~~d-----L~~al~~~~prvIvv--~gti~~~~~~G~~t~~~c~~~~~~~~~~~   74 (359)
T 1idk_A            2 GVSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTASACQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CCCCCCccccCCCCCCCCceEEecCCHHH-----HHHHHcCCCceEEEE--CCEEEeccccCcccccccccccccccccc
Confidence            56789999999999999999999999999     999999999999995  8999974                      


Q ss_pred             ---------------------------ceeEeccceeeeeeccceEEecCcEEEe-eeccEEEeeeEEecCCC---CCCC
Q 020121           73 ---------------------------SYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGGRG---HDVD  121 (331)
Q Consensus        73 ---------------------------~~l~v~sn~TI~G~g~g~~i~G~gi~i~-~~~NVIIrnL~i~~g~~---~~~D  121 (331)
                                                 .+|.|.+||||+|+|.+++|.|.+|+|+ +++|||||||+||....   ++.|
T Consensus        75 ~~~~~~w~~~~~~~~~~~~~t~~~~~~~~l~v~snkTI~G~G~~~~i~G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~D  154 (359)
T 1idk_A           75 AIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCC
T ss_pred             ccccccccccccccCccccccccccccceEEeCCCceEEEecCCeEEecceEEEecCCCcEEEeCeEEEcccccccccCC
Confidence                                       3588999999999999999999999998 89999999999998642   6789


Q ss_pred             ceEEcCCCceEEEeeeeeecCCCCeeee-ecCCceEEEeccEEecc------------CceeeecCCCCCCCCcceEEEE
Q 020121          122 GIQIKPNSRHIWIDRCSLRDYDDGLIDI-TRQSTDITVSRCYFTQH------------DKTMLIGADPSHVGDRCIRVTI  188 (331)
Q Consensus       122 ~I~i~~~~~nVwIDHcs~s~~~Dg~~di-~~~s~~vTiS~n~f~~h------------~k~~liG~~~~~~~d~~~~vT~  188 (331)
                      +|.|+ +++|||||||+|+|..|++++. ++++++||||||+|.+|            ++++|+|++|        +|||
T Consensus       155 aI~i~-~s~nVwIDHcs~s~~~d~~~~~g~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd--------~vT~  225 (359)
T 1idk_A          155 AITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDAD--------LVTM  225 (359)
T ss_dssp             SEEEC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSC--------EEEE
T ss_pred             ceeec-CCCcEEEEeeEeecCCCCcEEecccCcceEEEECcEecCCcccccccCccccceEEEEecCC--------CeEE
Confidence            99998 7999999999999999999986 67899999999999743            4899999875        8999


Q ss_pred             eceeecCCCCCCcccccC-eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeee----eeecc--ccCccccC
Q 020121          189 HHCLFDGTRQRHPRLRFG-KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFE----YYTEK--AADKLEAK  261 (331)
Q Consensus       189 hhN~f~~~~~R~Pr~r~G-~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~----~~~~~--~~~~~~~~  261 (331)
                      |||||.++.+|+||+|+| ++|++||||++|..|++..++++++++|+|||+++..+....    |....  .....++.
T Consensus       226 hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~G~~~~~~~~~~~~~c~~~  305 (359)
T 1idk_A          226 KGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTY  305 (359)
T ss_dssp             ESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHH
T ss_pred             EceEeecCcccCccccCCceEEEECCEEecccceEEeccCCcEEEEEccEEECCCCceecCCCCEEeecCcccchhhhhc
Confidence            999999999999999998 599999999999999999999999999999999876543210    00000  00000111


Q ss_pred             ccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          262 SGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       262 ~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      -|++. ..|.|.+.....  . . ....++++..|..|++++|+ .|++.|.+.||+.+
T Consensus       306 lg~~~-~~N~~~~sg~~~--~-~-~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~g~  358 (359)
T 1idk_A          306 LGRDC-VINGFGSSGTFS--E-D-STSFLSDFEGKNIASASAYT-SVASRVVANAGQGN  358 (359)
T ss_dssp             HSSCC-CCCEEESSCCCC--C-B-CCTTGGGGTTSCCCCCCCGG-GHHHHHHHHCSTTC
T ss_pred             cCcce-eecccccCCccc--c-C-CcccccccCCccccccCCHH-HhhhhhhccCCCcc
Confidence            22222 245665432111  1 1 11112333323347899996 59999999999875

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=100.00  E-value=1.8e-60  Score=462.87  Aligned_cols=284  Identities=20%  Similarity=0.243  Sum_probs=222.9

Q ss_pred             ccCCCcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC----------------------
Q 020121           15 ALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS----------------------   72 (331)
Q Consensus        15 ~~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~----------------------   72 (331)
                      ++.++|||||++||||++|++++|||++|     ||+||++++||+|||  +|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~gg~~v~Vtt~~~-----L~~al~~~~prvIvv--~gtid~~g~~g~~~~~~c~~~~~~~~~~~   74 (359)
T 1qcx_A            2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CcCCCcceeecCCcCCCCcceEEeCCHHH-----HHHHHcCCCCeEEEE--CcEEeeccccccccccccccccccccccc
Confidence            45788999999999999999999999999     999999999999993  5555531                      


Q ss_pred             ---------------------------ceeEeccceeeeeeccceEEecCcEEEe-eeccEEEeeeEEecCCC---CCCC
Q 020121           73 ---------------------------SYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGGRG---HDVD  121 (331)
Q Consensus        73 ---------------------------~~l~v~sn~TI~G~g~g~~i~G~gi~i~-~~~NVIIrnL~i~~g~~---~~~D  121 (331)
                                                 ..|.|.+||||+|+|.+++|.|.+|+|+ +++|||||||+||++..   +++|
T Consensus        75 ~i~~~~~~~~~~~~~p~~ti~~~~a~~~~i~v~snkTI~G~g~~~~I~G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~D  154 (359)
T 1qcx_A           75 AINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCC
T ss_pred             eecccccccccccCCccceeeecccccceEEeCCCceEEecCCceEEecceEEEecCCCCEEEeCcEEEecCCcccccCc
Confidence                                       2578899999999999999999999998 89999999999998653   5789


Q ss_pred             ceEEcCCCceEEEeeeeeecCCCCee-eeecCCceEEEeccEEec-----------c-CceeeecCCCCCCCCcceEEEE
Q 020121          122 GIQIKPNSRHIWIDRCSLRDYDDGLI-DITRQSTDITVSRCYFTQ-----------H-DKTMLIGADPSHVGDRCIRVTI  188 (331)
Q Consensus       122 ~I~i~~~~~nVwIDHcs~s~~~Dg~~-di~~~s~~vTiS~n~f~~-----------h-~k~~liG~~~~~~~d~~~~vT~  188 (331)
                      +|.|+ +++|||||||+|+|..|+++ +.++++++||||||+|++           | +++||+|++|        ++||
T Consensus       155 aI~i~-~s~nvwIDHcs~s~~~d~~~~~~~~~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd--------~vT~  225 (359)
T 1qcx_A          155 AITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSND--------MVTL  225 (359)
T ss_dssp             SEEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSE--------EEEE
T ss_pred             eeEec-CCceEEEEeeEeeccCcCceeecccccccEEEECcEecCCccccccCcccccceeEEecCCC--------Ceeh
Confidence            99998 79999999999999999998 456789999999999983           4 5789999875        7999


Q ss_pred             eceeecCCCCCCcccccC-eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeee----eeccc---cCcccc
Q 020121          189 HHCLFDGTRQRHPRLRFG-KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY----YTEKA---ADKLEA  260 (331)
Q Consensus       189 hhN~f~~~~~R~Pr~r~G-~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~----~~~~~---~~~~~~  260 (331)
                      |||||.++.+|+||+|++ ++|++||||++|..|++..++++++++|+|||++++.+.....    +....   ....+.
T Consensus       226 ~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~a~~~~~~~~i~~e~N~F~~~~~~~~~~~~g~~f~~~~~~~~~~c~~  305 (359)
T 1qcx_A          226 KGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCAS  305 (359)
T ss_dssp             ESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHH
T ss_pred             cccEeccCcccCceecCCceEEEEccEEECccCeEEecCCCceEEEEeeEEECCCcccCcCCCCceeecccccccchhhh
Confidence            999999999999999986 6999999999999999999999999999999999876532100    00000   000000


Q ss_pred             CccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          261 KSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       261 ~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      .-|.+. ..|.|.++...  ..  ..+..+.+++.|..|++++|+ .|++.|.++||+.+
T Consensus       306 ~lgr~~-~~N~~~~sg~~--~~--~~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~gk  359 (359)
T 1qcx_A          306 VFGRSC-QLNAFGNSGSM--SG--SDTSIISKFAGKTIAAAHPPG-AIAQWTMKNAGQGK  359 (359)
T ss_dssp             HHSSCC-CCCEEESCCCC--CC--BCGGGGGGGTTSCCCCCCCGG-GHHHHHHHHSSTTC
T ss_pred             ccCccc-cccccccCCcc--cC--CCcccccccCCccccccccHH-HhhhhhhccCCCCC
Confidence            112221 23555543221  11  112223443334347899996 69999999999863

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=100.00  E-value=4.8e-59  Score=451.85  Aligned_cols=279  Identities=20%  Similarity=0.212  Sum_probs=221.5

Q ss_pred             cccccC---CCCCCCCCceEEecCCCCCCCchHHHHhhc-----------CCCeEEEEEeeeEEEeC-------------
Q 020121           20 AEGFGR---FAIGGLHGPVYFVTNLSDDGPGSLREGCRR-----------REPLWIVFEVSGTIHLS-------------   72 (331)
Q Consensus        20 a~Gfg~---~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~-----------~~pr~Ivf~v~G~I~l~-------------   72 (331)
                      .+|||.   +|+||  +.+++|||+++     |++||++           .+++.+||.|+|+|++.             
T Consensus         4 ~~G~at~~Ggt~gg--~~~~tvtt~~~-----L~~al~~~~~~~~g~~~~~~~~p~vi~v~GtId~~~~~~~~~~~~~~~   76 (353)
T 1air_A            4 TGGYAATAGGNVTG--AVSKTATSMQD-----IVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWS   76 (353)
T ss_dssp             CSSSCBCCTTCSTT--CEEEEESSHHH-----HHHHHHHTTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTSGGGSTT
T ss_pred             CCcceecCCCCCCC--cceEEeCCHHH-----HHHHHHhhccccccccccCCCceEEEEEccEEeccccccccccccccc
Confidence            578876   23333  46789999997     9999975           45666788899999982             


Q ss_pred             ---ceeEe---ccceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC--CCCCCceEEcCCCceEEEeeeeeecC--
Q 020121           73 ---SYLSV---SSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR--GHDVDGIQIKPNSRHIWIDRCSLRDY--  142 (331)
Q Consensus        73 ---~~l~v---~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~--~~~~D~I~i~~~~~nVwIDHcs~s~~--  142 (331)
                         +.+.|   .+||||+|+..  .+.|.+|+|++++|||||||+|+...  .+++|+|+|+ +++|||||||+|+|.  
T Consensus        77 ~~~~~~~i~~~~sn~TI~G~~~--~~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~-~s~nVWIDH~s~s~~~~  153 (353)
T 1air_A           77 KDPRGVEIKEFTKGITIIGANG--SSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANH  153 (353)
T ss_dssp             SCCCEEEEESBCSCEEEEECTT--CCBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEE-SCCSEEEESCEEECCSC
T ss_pred             cCCCceEEEecCCCEEEEeccC--CCCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEee-CCCcEEEEeeEEecCCc
Confidence               56777   58999999843  35688999999999999999999764  3578999998 899999999999985  


Q ss_pred             -----------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEE
Q 020121          143 -----------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLY  211 (331)
Q Consensus       143 -----------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~  211 (331)
                                 .||++|+++++++||||||+|++|+|++|+|++++...   ++||||||||+++.+|+||+|+|++|+|
T Consensus       154 ~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g---~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~  230 (353)
T 1air_A          154 ECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTG---RNITYHHNYYNDVNARLPLQRGGLVHAY  230 (353)
T ss_dssp             CCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCC---CEEEEESCEEEEEEECSCEEESSEEEEE
T ss_pred             ccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCC---ceEEEEceEEcCCcCCCCCCcCceEEEE
Confidence                       39999999999999999999999999999999876432   6999999999999999999999999999


Q ss_pred             cceEeccccceeeeccCceEEEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEc--------Ccc--cc--
Q 020121          212 NNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLK--------GAQ--AQ--  279 (331)
Q Consensus       212 NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~n--------g~~--~~--  279 (331)
                      ||||++|..|+++.++++++++|+|||+++..+...+        .+....|+|+.++|.+.+        ...  ..  
T Consensus       231 NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~p~~~~--------~~~~~~g~~~~~~n~~~~~~d~~~~~~~~~s~~~~  302 (353)
T 1air_A          231 NNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSR--------YDGKNFGTWVLKGNNITKPADFSTYSITWTADTKP  302 (353)
T ss_dssp             SCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEEC--------SSSSSCCEEEEESCSCCSTHHHHHHTEECCCCSSC
T ss_pred             ccEEECCCCceeccCCCcEEEEEceEEECCCCceEec--------CCCCCCceeEecccccccccccceecccccCCCcc
Confidence            9999999999999999999999999999875543211        122356889888876652        110  00  


Q ss_pred             ccc--CcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCCcC
Q 020121          280 LLT--GVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIP  322 (331)
Q Consensus       280 ~~~--~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~~~  322 (331)
                      +..  ...+. .+.|+.+|+ |++++|+ +||+.|+++||++..-
T Consensus       303 ~~~~~~~~~~-g~~~~~~Y~-y~~~~a~-~V~~~V~~~AGag~~~  344 (353)
T 1air_A          303 YVNADSWTST-GTFPTVAYN-YSPVSAQ-CVKDKLPGYAGVGKNL  344 (353)
T ss_dssp             CEECTTCCCC-SCCCCCCSC-CCCCCHH-HHHHHGGGTSSSSSTT
T ss_pred             cccccccccc-CCccccceE-EecCCHH-HhhhhhhhccCCCccc
Confidence            000  00111 112344575 8999995 7999999999998843

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=98.76  E-value=3.3e-07  Score=93.79  Aligned_cols=117  Identities=18%  Similarity=0.270  Sum_probs=81.3

Q ss_pred             EEEeeeccEEEeeeEEecCCCC--------CCCceEEcCC------CceEEEeeeeeecCCCCeeeeecCCceEEEeccE
Q 020121           97 LRLKECEHVIICNLEFEGGRGH--------DVDGIQIKPN------SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY  162 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~--------~~D~I~i~~~------~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~  162 (331)
                      |.+..++||.|++|+++....+        ..|++.++ +      ++||||++|.+....|..|.++ .+.+|+|++|.
T Consensus       137 I~f~~c~NV~I~gVti~NSp~~gI~I~~~~~NDGid~D-Gi~fd~~S~NV~I~Nc~I~~tGDDcIaIk-sseNI~I~Nc~  214 (609)
T 3gq8_A          137 LSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD-GTTAPNPSENIWIENCEATGFGDDGITTH-HSQYINILNCY  214 (609)
T ss_dssp             EEEESCEEEEEEEEEEESCSSCSEEEECSSSSCCCCCT-TCCCSSCCEEEEEESCEEESCSSCSEEEC-SCEEEEEESCE
T ss_pred             EEEEeeceEEEEeeEEEeCCCCCeEEeCCCCCccccCC-CccccccceeEEEEeeEEEecCCCEEEec-CCeeEEEEeEE
Confidence            6777899999999999875321        12455554 4      8999999999987666667784 69999999999


Q ss_pred             Eecc-----CceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc----C---eEEEEcceEe-cccccee
Q 020121          163 FTQH-----DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF----G---KVHLYNNYTR-NWGIYAV  223 (331)
Q Consensus       163 f~~h-----~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~----G---~~hv~NN~~~-n~~~~~~  223 (331)
                      +.+.     .-++-||..       ..+|++.+|.|.++. |-=|++.    +   .+++.||+.+ |+..|.+
T Consensus       215 ~~gp~G~S~~~GIsIGsg-------s~NVtV~Nc~i~nt~-~GIrIKt~~~~~~v~NV~I~n~vs~~nvrsyn~  280 (609)
T 3gq8_A          215 SHDPRLTANCNGFEIDDG-------SRHVVLSNNRSKGCY-GGIEIKAHGDAPAAYNISINGHMSVEDVRSYNF  280 (609)
T ss_dssp             EECCSSCSSCCSEEECTT-------CEEEEEESEEEESSS-EEEEEEECTTSCCCEEEEEEEEEEESCSEEEEE
T ss_pred             EECCCCCCCcccEEccCC-------cccEEEEeeEEECCC-CEEEEEecCCCCccccEEEECCEeecCceEecc
Confidence            9543     234455532       248999999998764 3344431    1   5788888654 4444444

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=98.73  E-value=1.7e-06  Score=83.15  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=90.5

Q ss_pred             eeccEEEeeeEEecCCC---------------------CCCCceEEcCCCceEEEeeee-eecCCCCeeeeecCCceEEE
Q 020121          101 ECEHVIICNLEFEGGRG---------------------HDVDGIQIKPNSRHIWIDRCS-LRDYDDGLIDITRQSTDITV  158 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~---------------------~~~D~I~i~~~~~nVwIDHcs-~s~~~Dg~~di~~~s~~vTi  158 (331)
                      .++|+.|++++|+....                     ...|||.+. .++++.|.+|. +....||+ ++..++++++|
T Consensus       132 ~~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~-~s~~~~i~~N~~~~~~~~GI-~~~~~s~~v~I  209 (377)
T 2pyg_A          132 ADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD-YLVDSVFENNVAYANDRHGF-NVVTSTHDFVM  209 (377)
T ss_dssp             CEEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEE-SEEEEEEESCEEESCSSCSE-EEETTCEEEEE
T ss_pred             cccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEe-ccCCcEEECcEEEccccCcE-EEEeccCCeEE
Confidence            46788888888885321                     234666665 55666677774 34456665 55556899999


Q ss_pred             eccEEeccCceeee---cCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccceeeeccCceEEEE
Q 020121          159 SRCYFTQHDKTMLI---GADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVCASVESQIYSQ  234 (331)
Q Consensus       159 S~n~f~~h~k~~li---G~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~~~~~a~v~~e  234 (331)
                      ++|.+.+...+..+   |+....   ...++++.+|.+.++..+-..+.. ..+.+.||.+.+....++....-..+.++
T Consensus       210 ~nN~i~~~~~g~~~~~~g~~~~~---~s~nv~i~~N~~~~n~~~Gi~~~~~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~  286 (377)
T 2pyg_A          210 TNNVAYGNGSSGLVVQRGLEDLA---LPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQIL  286 (377)
T ss_dssp             ESCEEESCSSCSEEEECCSSCCC---CCEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESCSSCSEEEEEEEEEEEE
T ss_pred             ECCEEECccCceEEEeccccCCC---CCccEEEECCEEEcCccCceEeccccCeEEECCEEECCCCceEEEecCCCcEEE
Confidence            99999876555444   332211   123789999987776555444432 35789999998875577766656688899


Q ss_pred             ceEEecCC
Q 020121          235 CNIYEAGQ  242 (331)
Q Consensus       235 ~N~f~~~~  242 (331)
                      +|.|....
T Consensus       287 ~N~i~~n~  294 (377)
T 2pyg_A          287 DNQIHDNA  294 (377)
T ss_dssp             SCEEESCC
T ss_pred             CcEEECCc
Confidence            99998643

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.61  E-value=9e-06  Score=79.75  Aligned_cols=203  Identities=10%  Similarity=0.057  Sum_probs=126.8

Q ss_pred             CCceEEec-CCCCCCCc-------hHHHHhhcCCCeEEEEEeeeEEE--eC----ceeEec------cceeeeeec-cce
Q 020121           32 HGPVYFVT-NLSDDGPG-------SLREGCRRREPLWIVFEVSGTIH--LS----SYLSVS------SYKTIDGRG-QRI   90 (331)
Q Consensus        32 gg~vv~Vt-~l~d~g~G-------sLr~ai~~~~pr~Ivf~v~G~I~--l~----~~l~v~------sn~TI~G~g-~g~   90 (331)
                      .+++++|. +-+|+++|       +|++|++...|...|+=..|+-.  ++    ..|.+.      ..+||.|.+ ...
T Consensus        13 ~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~g~~~   92 (400)
T 1ru4_A           13 TKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRA   92 (400)
T ss_dssp             CSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCCE
T ss_pred             CccEEEEcCCCCCCCCCccccCCccHHHHHhhCCCCCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEecCCCC
Confidence            34567774 34455555       99999998777654443577777  33    345553      349999984 466


Q ss_pred             EEe-----c------CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEe
Q 020121           91 KLT-----G------KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVS  159 (331)
Q Consensus        91 ~i~-----G------~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS  159 (331)
                      +|.     +      .+|.| .++++.|++|+|+...   ..||.+. + +++.|++|.|.+..+.-|.+...+.+.+|.
T Consensus        93 vI~~~~~~g~~~~~~~~i~i-~~~~~~i~gl~I~n~g---~~GI~v~-g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~  166 (400)
T 1ru4_A           93 VFDFSFPDSQWVQASYGFYV-TGDYWYFKGVEVTRAG---YQGAYVI-G-SHNTFENTAFHHNRNTGLEINNGGSYNTVI  166 (400)
T ss_dssp             EEECCCCTTCCCTTCCSEEE-CSSCEEEESEEEESCS---SCSEEEC-S-SSCEEESCEEESCSSCSEEECTTCCSCEEE
T ss_pred             EEeCCccCCccccceeEEEE-ECCeEEEEeEEEEeCC---CCcEEEe-C-CCcEEEeEEEECCCceeEEEEcccCCeEEE
Confidence            775     2      45888 4899999999998653   2489997 5 567799999999888555776555688899


Q ss_pred             ccEEeccCc---------e-eeecCC--CCC---------CCC------cceEEEEeceeecCCCCCCc----------c
Q 020121          160 RCYFTQHDK---------T-MLIGAD--PSH---------VGD------RCIRVTIHHCLFDGTRQRHP----------R  202 (331)
Q Consensus       160 ~n~f~~h~k---------~-~liG~~--~~~---------~~d------~~~~vT~hhN~f~~~~~R~P----------r  202 (331)
                      +|.+.+...         + .++-..  .+.         ..|      ..-.|++.+|+..++....-          -
T Consensus       167 nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnG  246 (400)
T 1ru4_A          167 NSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNG  246 (400)
T ss_dssp             SCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCS
T ss_pred             ceEEEcccCccccCcccceEEEEecccCCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCC
Confidence            999875321         1 111110  000         001      01136777776544432110          0


Q ss_pred             cccC------eEEEEcceEeccccceeeeccCc-eEEEEceEEec
Q 020121          203 LRFG------KVHLYNNYTRNWGIYAVCASVES-QIYSQCNIYEA  240 (331)
Q Consensus       203 ~r~G------~~hv~NN~~~n~~~~~~~~~~~a-~v~~e~N~f~~  240 (331)
                      ++.|      ...|.||+.++...+++...... .+.+++|.+..
T Consensus       247 f~lgg~~~~~~~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~  291 (400)
T 1ru4_A          247 FKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYK  291 (400)
T ss_dssp             EECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEES
T ss_pred             EEEeccCCcCCEEEEeeEEECCcCcCEeecCCCCCEEEECeEEEC
Confidence            1111      24688998888877888775554 46778886543

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.56  E-value=1.9e-06  Score=82.46  Aligned_cols=91  Identities=20%  Similarity=0.358  Sum_probs=62.3

Q ss_pred             eccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCC
Q 020121          102 CEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  176 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~  176 (331)
                      ++||.|+|++|....     ....|||.+. .++||+|.+|.+....|. +.++. +.+|+|++|.+... .++.||+..
T Consensus       130 ~~nv~i~~~~I~~~~~d~~~~~ntDGidi~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~g-hGisiGS~g  205 (336)
T 1nhc_A          130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDDC-IAINS-GESISFTGGTCSGG-HGLSIGSVG  205 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSEE-EEESS-EEEEEEESCEEESS-SEEEEEEES
T ss_pred             eCCEEEEEEEEECCCcccccCCCCCcEEec-CCCeEEEEeCEEEcCCCE-EEEeC-CeEEEEEeEEEECC-cCceEccCc
Confidence            455555555555432     3457999997 789999999999877664 57754 58999999999853 257777632


Q ss_pred             CCCCCcceEEEEeceeecCC
Q 020121          177 SHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       177 ~~~~d~~~~vT~hhN~f~~~  196 (331)
                      ......--+|++.++.|.++
T Consensus       206 ~~~~~~v~nV~v~n~~~~~t  225 (336)
T 1nhc_A          206 GRDDNTVKNVTISDSTVSNS  225 (336)
T ss_dssp             SSSCCEEEEEEEEEEEEESC
T ss_pred             cccCCCEEEEEEEeeEEECC
Confidence            22222234889999988774

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.55  E-value=2.5e-06  Score=86.10  Aligned_cols=122  Identities=22%  Similarity=0.274  Sum_probs=81.4

Q ss_pred             eEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeCceeEe------ccceeeeeec-cceEEecCc-EEEeeeccEE
Q 020121           35 VYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSV------SSYKTIDGRG-QRIKLTGKG-LRLKECEHVI  106 (331)
Q Consensus        35 vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v------~sn~TI~G~g-~g~~i~G~g-i~i~~~~NVI  106 (331)
                      .+.|.+..     +|++|+++..|...++=-.|+-.- ..|.+      ...+||.|.+ .+++|.|.. |.+. +++|.
T Consensus        25 ~i~V~~~~-----~Lq~Ai~~A~pGDtI~L~~GtY~~-~~i~i~~sGt~~~pItl~~~~~~~~vi~G~~~l~i~-g~~v~   97 (506)
T 1dbg_A           25 GQVVASNE-----TLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLI   97 (506)
T ss_dssp             -CEECSHH-----HHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEE
T ss_pred             EEEeCCHH-----HHHHHHHhCCCCCEEEECCCEEec-ceEEEecCCcCCCCEEEECCCCCccEEeCCceEEEE-cCCEE
Confidence            35777554     499999987776544324566542 24666      4679999973 467788764 7775 79999


Q ss_pred             EeeeEEecCCCC-------CCCceEEcCCCceEEEeeeeeecCCCCe-eeee-------cCCceEEEeccEEec
Q 020121          107 ICNLEFEGGRGH-------DVDGIQIKPNSRHIWIDRCSLRDYDDGL-IDIT-------RQSTDITVSRCYFTQ  165 (331)
Q Consensus       107 IrnL~i~~g~~~-------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-~di~-------~~s~~vTiS~n~f~~  165 (331)
                      |++|+|+++...       +..++.+.  ++++.|.+|.|....++. +.+.       ..+.+.+|.+|.|.+
T Consensus        98 i~GL~i~~~~~~~~~~~~~~~~~iav~--G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n~I~~N~I~G  169 (506)
T 1dbg_A           98 LEGIWFKDGNRAIQAWKSHGPGLVAIY--GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTD  169 (506)
T ss_dssp             EESCEEEEECCCTTTCCTTSCCSEEEC--SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEEC
T ss_pred             EECeEEECCCcceeeeecccccceEEe--cCCeEEEeeEEEcCCCCceeeEeecccceeeeccccEEECcEEEC
Confidence            999999976421       12456665  367789999998876651 1222       134566888888876

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=98.52  E-value=4.6e-07  Score=88.50  Aligned_cols=182  Identities=15%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             CCCeEEEEEeeeEEEeCceeEeccc-eeeeeeccceE---Ee------c------Cc--EEEeee---------------
Q 020121           56 REPLWIVFEVSGTIHLSSYLSVSSY-KTIDGRGQRIK---LT------G------KG--LRLKEC---------------  102 (331)
Q Consensus        56 ~~pr~Ivf~v~G~I~l~~~l~v~sn-~TI~G~g~g~~---i~------G------~g--i~i~~~---------------  102 (331)
                      ..|.-++.=-.|.-.|.+++.|... +||.|.+.+.+   |.      |      +|  |++..+               
T Consensus        54 A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~  133 (410)
T 2inu_A           54 ARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDP  133 (410)
T ss_dssp             SCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSS
T ss_pred             CCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCc
Confidence            3455433334688888899999865 99999876654   66      3      22  555543               


Q ss_pred             --ccEEEeeeEEecC-----C---CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCc-eee
Q 020121          103 --EHVIICNLEFEGG-----R---GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TML  171 (331)
Q Consensus       103 --~NVIIrnL~i~~g-----~---~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k-~~l  171 (331)
                        ++|.|++|.|++.     .   ..+.-||.+...++++.|.+|.|.+...|+ .+ +++++++|.+|.|.+..- ..|
T Consensus       134 r~s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~~fGI-~l-~~a~~~~I~~N~I~e~GNgI~L  211 (410)
T 2inu_A          134 RLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHAL-IV-RGADALRVNDNMIAECGNCVEL  211 (410)
T ss_dssp             CEECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESCSEEE-EE-TTEESCEEESCEEESSSEEEEE
T ss_pred             ccCCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecccEEE-EE-ccCCCcEEECCEEEecCCceee
Confidence              7888888888875     2   234678999755888899999999999997 67 579999999999995332 356


Q ss_pred             ecC-CCC--------CCCCc-ceEEEE-eceeecCCCCCCcccccC-------eEEEEcceEeccccceeeecc--CceE
Q 020121          172 IGA-DPS--------HVGDR-CIRVTI-HHCLFDGTRQRHPRLRFG-------KVHLYNNYTRNWGIYAVCASV--ESQI  231 (331)
Q Consensus       172 iG~-~~~--------~~~d~-~~~vT~-hhN~f~~~~~R~Pr~r~G-------~~hv~NN~~~n~~~~~~~~~~--~a~v  231 (331)
                      ||. ..+        ...++ .+.+.. +++++.++..+ |+.|.|       ...+.+|.+.+.. |++..-.  ....
T Consensus       212 ~G~~~~~~I~~N~i~~~~dG~gIyl~ns~~~~I~~N~i~-~~~R~gIh~m~s~~~~i~~N~f~~~~-~Gi~~M~s~~~~n  289 (410)
T 2inu_A          212 TGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLF-PRGRSLIEFTGCNRCSVTSNRLQGFY-PGMLRLLNGCKEN  289 (410)
T ss_dssp             CSCEESCEEESCEEECCTTSEEEEEESEESCEEESCEEC-SCSSEEEEEESCBSCEEESCEEEESS-SCSEEEESSCBSC
T ss_pred             ccccccceEecceeeecCCCCEEEEEeCCCCEEECCCcc-cCcceEEEEEccCCCEEECCEEecce-eEEEEEEcCCCCC
Confidence            662 221        11232 155555 66677776442 233322       3467888777653 4544333  3367


Q ss_pred             EEEceEEecC
Q 020121          232 YSQCNIYEAG  241 (331)
Q Consensus       232 ~~e~N~f~~~  241 (331)
                      ++++|.|...
T Consensus       290 ~v~~N~f~~~  299 (410)
T 2inu_A          290 LITANHIRRT  299 (410)
T ss_dssp             EEESCEEEEE
T ss_pred             EEECCEEecc
Confidence            7789998754

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.44  E-value=1.1e-05  Score=77.29  Aligned_cols=92  Identities=17%  Similarity=0.308  Sum_probs=61.8

Q ss_pred             eeccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121          101 ECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      .++||.|++++|....     ....|||.+. .+++|+|++|.+....|. +.++. +.+|+|++|.+.... +..||+-
T Consensus       130 ~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~gh-GisiGSl  205 (339)
T 2iq7_A          130 SATTLGVYDVIIDNSAGDSAGGHNTDAFDVG-SSTGVYISGANVKNQDDC-LAINS-GTNITFTGGTCSGGH-GLSIGSV  205 (339)
T ss_dssp             SCEEEEEESCEEECGGGGGTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESSC-CEEEEEE
T ss_pred             ccCCEEEEEEEEECCccccccCCCCCcEEEc-CcceEEEEecEEecCCCE-EEEcC-CccEEEEeEEEECCc-eEEECcC
Confidence            3444444444444321     2347899997 789999999999877665 57754 589999999998632 5677763


Q ss_pred             CCCCCCcceEEEEeceeecCC
Q 020121          176 PSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       176 ~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      .......--+|++.++.|.++
T Consensus       206 g~~~~~~v~nV~v~n~~~~~~  226 (339)
T 2iq7_A          206 GGRSDNTVKTVTISNSKIVNS  226 (339)
T ss_dssp             SSSSCCEEEEEEEEEEEEESC
T ss_pred             CcccCCCEEEEEEEeeEEECC
Confidence            222222234889999988775

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.42  E-value=1.5e-06  Score=84.34  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             cceeeeeeccceEEec---CcEEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec---
Q 020121           79 SYKTIDGRGQRIKLTG---KGLRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR---  151 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G---~gi~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~---  151 (331)
                      +|++|.|    ++|.+   ..+.+..++||.|+|++|+... ....|||.+. .+++|+|++|.|..+.|. +.++.   
T Consensus       160 ~nv~I~~----iti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks~~~  233 (376)
T 1bhe_A          160 KNFTLYN----VSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAYKG  233 (376)
T ss_dssp             EEEEEEE----EEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCS-EEEEECTT
T ss_pred             eEEEEEe----EEEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeec-CCceEEEEeCEEecCCCe-EEEcccCC
Confidence            3566655    35554   3477778999999999999753 3468999997 899999999999877655 57873   


Q ss_pred             --CCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc
Q 020121          152 --QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       152 --~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                        .+.+|+|++|.+.. ..+.-||+..+    .--+|++.+|.|.++. +.-|++
T Consensus       234 ~~~s~nI~I~n~~~~~-ghGisiGSe~~----~v~nV~v~n~~~~~t~-~GirIK  282 (376)
T 1bhe_A          234 RAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGTT-NGLRIK  282 (376)
T ss_dssp             SCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESCS-EEEEEE
T ss_pred             CCCceEEEEEeeEEEc-cccEEeccCCc----cEeeEEEEeeEEeCCC-cEEEEE
Confidence              68999999999985 33566787432    2248999999998864 333443

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.41  E-value=1.4e-05  Score=76.55  Aligned_cols=91  Identities=16%  Similarity=0.280  Sum_probs=60.1

Q ss_pred             eccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCC
Q 020121          102 CEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  176 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~  176 (331)
                      ++||.|+|++|....     ....|||.+. .+++|+|++|.+....|. +.++. +.+|+|++|.+... .+..||+..
T Consensus       135 ~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~~~~g-hGisiGS~g  210 (339)
T 1ia5_A          135 SDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDDC-VAVNS-GENIYFSGGYCSGG-HGLSIGSVG  210 (339)
T ss_dssp             CEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESS-SCEEEEEEC
T ss_pred             ccCeEEeeEEEECCccccccCCCCCcEEec-CCceEEEEeeEEEcCCCe-EEEeC-CeEEEEEeEEEECC-ceEEECcCC
Confidence            444444444444321     2347889997 789999999999876555 57754 58999999998853 256777632


Q ss_pred             CCCCCcceEEEEeceeecCC
Q 020121          177 SHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       177 ~~~~d~~~~vT~hhN~f~~~  196 (331)
                      ......--+|++.++.|.++
T Consensus       211 ~~~~~~v~nV~v~n~~~~~t  230 (339)
T 1ia5_A          211 GRSDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             SSSCCEEEEEEEEEEEEESC
T ss_pred             cccCCCEEEEEEEeeEEECC
Confidence            22222234889988888774

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.41  E-value=3e-06  Score=81.25  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             eeEeccc--eeeeeeccce---------EEecCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC
Q 020121           74 YLSVSSY--KTIDGRGQRI---------KLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY  142 (331)
Q Consensus        74 ~l~v~sn--~TI~G~g~g~---------~i~G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~  142 (331)
                      .+.|...  =||.|+|..-         ..+-..|.+.+++||.|++|+|+...   ..+|.+. .+++|.|++|++...
T Consensus        69 nv~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~nsp---~~~i~i~-~~~nv~i~~~~I~~~  144 (339)
T 2iq7_A           69 NININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP---VQAFSIN-SATTLGVYDVIIDNS  144 (339)
T ss_dssp             SCEEEECTTCEEECCGGGTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECCS---SCCEEEE-SCEEEEEESCEEECG
T ss_pred             cEEEEcCCCCEEECCcccccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeCC---cceEEEe-ccCCEEEEEEEEECC
Confidence            3555432  4999997531         11223488888999999999999753   4679997 899999999999752


Q ss_pred             ---------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc------cC-
Q 020121          143 ---------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR------FG-  206 (331)
Q Consensus       143 ---------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r------~G-  206 (331)
                               .|| +|+. .+++|+|++|.|...+-+.-++++        -+|++.+|.+.+...  =.+.      .+ 
T Consensus       145 ~~d~~~~~ntDG-id~~-~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n~~~~~ghG--isiGSlg~~~~~~  212 (339)
T 2iq7_A          145 AGDSAGGHNTDA-FDVG-SSTGVYISGANVKNQDDCLAINSG--------TNITFTGGTCSGGHG--LSIGSVGGRSDNT  212 (339)
T ss_dssp             GGGGTTCCSCCS-EEEE-SCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSCC--EEEEEESSSSCCE
T ss_pred             ccccccCCCCCc-EEEc-CcceEEEEecEEecCCCEEEEcCC--------ccEEEEeEEEECCce--EEECcCCcccCCC
Confidence                     677 4884 689999999999877666666553        379999998876331  1110      02 


Q ss_pred             --eEEEEcceEeccccceeeec--cC-----ceEEEEceEEecCC
Q 020121          207 --KVHLYNNYTRNWGIYAVCAS--VE-----SQIYSQCNIYEAGQ  242 (331)
Q Consensus       207 --~~hv~NN~~~n~~~~~~~~~--~~-----a~v~~e~N~f~~~~  242 (331)
                        .+++.|+.+.+.. +++...  .+     .+|.+|+..+++..
T Consensus       213 v~nV~v~n~~~~~~~-~girIkt~~g~~G~v~nI~~~ni~~~~v~  256 (339)
T 2iq7_A          213 VKTVTISNSKIVNSD-NGVRIKTVSGATGSVSGVTYSGITLSNIA  256 (339)
T ss_dssp             EEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEES
T ss_pred             EEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeEEccCcc
Confidence              4678888887753 454332  11     24455555555443

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=98.39  E-value=5.5e-06  Score=85.35  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             ceeeeeeccceEEecC---cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC----
Q 020121           80 YKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ----  152 (331)
Q Consensus        80 n~TI~G~g~g~~i~G~---gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~----  152 (331)
                      |++|.|    ++|.+.   +|.+..++||.|+|++|........|||.+. .+++|+|++|.|..+.| .+.++.+    
T Consensus       341 nv~I~g----iti~ns~~~~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDD-~Iaiksg~~~~  414 (608)
T 2uvf_A          341 NVYLAG----FTVRNPAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDD-CINFAAGTGEK  414 (608)
T ss_dssp             EEEEES----CEEECCSSCSEEEESCEEEEEESCEEECTTCTTCCSEEEE-SCEEEEEESCEEECSSC-SEEEECCCSGG
T ss_pred             eEEEeC----cEEecCCCCEEEEecCCCEEEeeEEEcCCCCCCCCeEEec-CCceEEEEeeEEecCCc-eEEecCCcCcc
Confidence            455554    345543   4778889999999999987544568999997 89999999999987654 4567543    


Q ss_pred             ------CceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc-----cC---eEEEEcceEecc
Q 020121          153 ------STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR-----FG---KVHLYNNYTRNW  218 (331)
Q Consensus       153 ------s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r-----~G---~~hv~NN~~~n~  218 (331)
                            +.+|+|++|.+....-...||+..+   ..--+|++.+|.|.++. +-=|++     .|   .+++.|+...+.
T Consensus       415 g~~~~~s~nI~I~n~~~~~ghg~~~iGS~~~---~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni~m~~v  490 (608)
T 2uvf_A          415 AQEQEPMKGAWLFNNYFRMGHGAIVTGSHTG---AWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNNAMRDL  490 (608)
T ss_dssp             GGGSCCEEEEEEESCEECSSSCSEEEESCCT---TCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEEEEEEE
T ss_pred             ccccccccCEEEEeEEEeCCCCeEEEcccCC---CCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEeeEEEcc
Confidence                  6899999999986433344787421   22348999999998863 222331     23   245666655554

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.36  E-value=5.3e-06  Score=79.54  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=95.1

Q ss_pred             eeEeccc--eeeeeeccce---------EEecCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC
Q 020121           74 YLSVSSY--KTIDGRGQRI---------KLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY  142 (331)
Q Consensus        74 ~l~v~sn--~TI~G~g~g~---------~i~G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~  142 (331)
                      .+.|...  =||.|+|..-         ..+-..|.+.+++||.|++|+|+...   ..+|.+. .+++|.|++|++...
T Consensus        73 nv~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp---~~~i~i~-~~~nv~i~~~~I~~~  148 (339)
T 1ia5_A           73 DLTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSP---VQVFSVA-GSDYLTLKDITIDNS  148 (339)
T ss_dssp             SCEEEECTTCEEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCS---SCCEEEE-SCEEEEEESCEEECG
T ss_pred             cEEEEcCCCeEEeCCCCccccccccCCCCCCCeEEEEeecCcEEEEEEEEEcCC---cceEEEe-cccCeEEeeEEEECC
Confidence            3555432  4999997531         11222488888999999999999753   4789997 899999999999752


Q ss_pred             ---------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc-c-----cC-
Q 020121          143 ---------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL-R-----FG-  206 (331)
Q Consensus       143 ---------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~-r-----~G-  206 (331)
                               .|| +|+. .+++|+|++|.|...+-+.-++++        .+|++.+|.+.+...  =.+ .     .+ 
T Consensus       149 ~~d~~~~~ntDG-id~~-~s~nV~I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~g~~~~~~  216 (339)
T 1ia5_A          149 DGDDNGGHNTDA-FDIG-TSTYVTISGATVYNQDDCVAVNSG--------ENIYFSGGYCSGGHG--LSIGSVGGRSDNT  216 (339)
T ss_dssp             GGTTTTCCSCCS-EEEE-SCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSSC--EEEEEECSSSCCE
T ss_pred             ccccccCCCCCc-EEec-CCceEEEEeeEEEcCCCeEEEeCC--------eEEEEEeEEEECCce--EEECcCCcccCCC
Confidence                     677 5884 689999999999977666666553        378999988876432  112 0     02 


Q ss_pred             --eEEEEcceEeccccceee
Q 020121          207 --KVHLYNNYTRNWGIYAVC  224 (331)
Q Consensus       207 --~~hv~NN~~~n~~~~~~~  224 (331)
                        .+++.|+.+.+.. +++.
T Consensus       217 v~nV~v~n~~~~~t~-~gir  235 (339)
T 1ia5_A          217 VKNVTFVDSTIINSD-NGVR  235 (339)
T ss_dssp             EEEEEEEEEEEESCS-EEEE
T ss_pred             EEEEEEEeeEEECCC-cEEE
Confidence              3678888887753 4543

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.28  E-value=5.7e-06  Score=81.62  Aligned_cols=96  Identities=15%  Similarity=0.349  Sum_probs=71.1

Q ss_pred             cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121           96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  175 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~  175 (331)
                      +|.+..++||.|+|++|..+.....|||.+. . +||+|.+|.+..+.| .+.++.++.+|+|++|.+.... +.-||+.
T Consensus       152 ~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~-~-~nV~I~n~~i~~gDD-~Iai~s~~~nI~I~n~~~~~~~-GisIGS~  227 (422)
T 1rmg_A          152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNKDE-CVTVKSPANNILVESIYCNWSG-GCAMGSL  227 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESSSE-EEEEEEEEEEEEEEEEEEESSS-EEEEEEE
T ss_pred             EEEEeCcCCEEEEeEEEECCCCCCCccEeec-C-CeEEEEeeEEeCCCC-eEEeCCCCcCEEEEeEEEcCCc-ceeeccc
Confidence            4666667888888888887433358999997 6 999999999986655 5688777899999999987543 7777763


Q ss_pred             CCCCCCcceEEEEeceeecCCC
Q 020121          176 PSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       176 ~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      ...  ..--+|++.+|.|.++.
T Consensus       228 g~~--~~v~nV~v~n~~~~~~~  247 (422)
T 1rmg_A          228 GAD--TDVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             CTT--EEEEEEEEEEEEEESSS
T ss_pred             CCC--CcEEEEEEEeEEEeccc
Confidence            211  11247899999888753

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=98.21  E-value=7.9e-06  Score=81.26  Aligned_cols=108  Identities=21%  Similarity=0.333  Sum_probs=80.0

Q ss_pred             cceeeeeeccceEEecC---cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC---
Q 020121           79 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ---  152 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~---gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~---  152 (331)
                      +|++|.|    ++|...   .+.+..++||.|+||+|... ....|||.+. .|+||+|++|.|..+ |..+.++.+   
T Consensus       199 ~nv~i~g----iti~nsp~~~i~~~~~~nv~i~~v~I~~~-~~NtDGidi~-~s~nV~I~n~~i~~g-DDcIaiksg~~~  271 (448)
T 3jur_A          199 RNVLVEG----VKIINSPMWCIHPVLSENVIIRNIEISST-GPNNDGIDPE-SCKYMLIEKCRFDTG-DDSVVIKSGRDA  271 (448)
T ss_dssp             EEEEEES----CEEESCSSCSEEEESCEEEEEESCEEEEC-STTCCSBCCB-SCEEEEEESCEEEES-SEEEEEBCCCHH
T ss_pred             cceEEEe----eEEEeCCCceEeeeccCCEEEEeEEEeec-cCCCcccccc-CCcCEEEEeeEEEeC-CCcEEeccCccc
Confidence            3555655    355443   47777899999999999975 4468999997 899999999999975 555677655   


Q ss_pred             --------CceEEEeccEEec--cCceeeecCCCCCCCCcceEEEEeceeecCC
Q 020121          153 --------STDITVSRCYFTQ--HDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       153 --------s~~vTiS~n~f~~--h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                              +.+|+|++|.+..  ..-+.-||+..+   ..--+|++.++.|.++
T Consensus       272 dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~---~~v~nV~v~n~~~~~t  322 (448)
T 3jur_A          272 DGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMS---GGVRNVVARNNVYMNV  322 (448)
T ss_dssp             HHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCT---TCEEEEEEESCEEESC
T ss_pred             cccccCCCceeEEEEEeEEecCCCcceEEECCccc---CcEEEEEEEEEEEecc
Confidence                    7899999999932  223677887532   2235899999999654

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.19  E-value=0.00013  Score=71.82  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec----CCCCeeeeecCCceEEEeccEEeccCceeee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  172 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~li  172 (331)
                      |.+..++||.|++|+|+...   ..+|.+. .+++|.|++|.+..    ..||+ |+..  .+|+|++|.|...+-+.-+
T Consensus       130 i~~~~~~nv~I~~iti~nsp---~~~i~i~-~~~nv~I~n~~I~~~d~~ntDGi-di~~--~nV~I~n~~i~~gDD~Iai  202 (422)
T 1rmg_A          130 LRLTDVTHFSVHDIILVDAP---AFHFTMD-TCSDGEVYNMAIRGGNEGGLDGI-DVWG--SNIWVHDVEVTNKDECVTV  202 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECCS---SCSEEEE-EEEEEEEEEEEEECCSSTTCCSE-EEEE--EEEEEEEEEEESSSEEEEE
T ss_pred             EEEcccceEEEECeEEECCC---ceEEEEe-CcCCEEEEeEEEECCCCCCCccE-eecC--CeEEEEeeEEeCCCCeEEe
Confidence            67778999999999999753   3579997 89999999999986    46884 8864  8999999999987777777


Q ss_pred             cCCCCCCCCcceEEEEeceeecCCCCCCccccc---C------eEEEEcceEecccccee
Q 020121          173 GADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF---G------KVHLYNNYTRNWGIYAV  223 (331)
Q Consensus       173 G~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~---G------~~hv~NN~~~n~~~~~~  223 (331)
                      ++.       ..+|++.+|.+....    .++.   |      .+++.|+.+.+.. +++
T Consensus       203 ~s~-------~~nI~I~n~~~~~~~----GisIGS~g~~~~v~nV~v~n~~~~~~~-~Gi  250 (422)
T 1rmg_A          203 KSP-------ANNILVESIYCNWSG----GCAMGSLGADTDVTDIVYRNVYTWSSN-QMY  250 (422)
T ss_dssp             EEE-------EEEEEEEEEEEESSS----EEEEEEECTTEEEEEEEEEEEEEESSS-CSE
T ss_pred             CCC-------CcCEEEEeEEEcCCc----ceeecccCCCCcEEEEEEEeEEEeccc-eEE
Confidence            651       137888888875432    2222   1      4578888877653 344

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.13  E-value=1.5e-05  Score=77.11  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             eccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCC
Q 020121          102 CEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  176 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~  176 (331)
                      ++||.|+|++|....     ....|||.+. .++||+|.+|.+..+.|. +.++. ..+|+|++|.+.... +..||+-.
T Consensus       156 ~~nv~i~~~~I~~~~~d~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~~~~gh-GisiGS~G  231 (362)
T 1czf_A          156 ANDITFTDVTINNADGDTQGGHNTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVNS-GENIWFTGGTCIGGH-GLSIGSVG  231 (362)
T ss_dssp             CSSEEEESCEEECGGGGTTTCCSCCSEEEC-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESSC-CEEEEEEC
T ss_pred             eCCEEEEEEEEECCccccccCCCCCceeec-CcceEEEEeeEEecCCCE-EEEeC-CeEEEEEEEEEeCCc-eeEEeecc
Confidence            455555555555421     3457999997 789999999999977665 57864 489999999998632 57777632


Q ss_pred             CCCCCcceEEEEeceeecCC
Q 020121          177 SHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       177 ~~~~d~~~~vT~hhN~f~~~  196 (331)
                      ......--+|++.++.|.++
T Consensus       232 ~~~~~~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          232 DRSNNVVKNVTIEHSTVSNS  251 (362)
T ss_dssp             SSSCCEEEEEEEEEEEEEEE
T ss_pred             ccCCCCEEEEEEEeeEEECC
Confidence            11122234788888888764

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.12  E-value=7.8e-05  Score=72.23  Aligned_cols=137  Identities=12%  Similarity=0.135  Sum_probs=94.9

Q ss_pred             cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCcee
Q 020121           96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTM  170 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~  170 (331)
                      .|.+.+++||.|++|+|+....   -.+.+. .+++|.|+++++..     ..||+ |+. .+++|+|++|.|...+-+.
T Consensus       153 ~i~~~~~~nv~I~~iti~nsp~---~~i~~~-~~~~v~i~~v~I~~~~~~~NtDGi-d~~-~s~nV~I~n~~i~~gDDcI  226 (376)
T 1bhe_A          153 LIQINKSKNFTLYNVSLINSPN---FHVVFS-DGDGFTAWKTTIKTPSTARNTDGI-DPM-SSKNITIAYSNIATGDDNV  226 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCSS---CSEEEE-SCEEEEEEEEEEECCTTCSSCCSE-EEE-SCEEEEEESCEEECSSCSE
T ss_pred             EEEEEcceEEEEEeEEEECCCc---EEEEEe-CCCcEEEEeEEEECCCCCCCCceE-eec-CCceEEEEeCEEecCCCeE
Confidence            4778889999999999998643   458886 89999999999975     47885 884 6899999999999877666


Q ss_pred             eecCCCCCCCCcceEEEEeceeecCCCCCCcccccC-------eEEEEcceEeccccceeeecc----C---ceEEEEce
Q 020121          171 LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFG-------KVHLYNNYTRNWGIYAVCASV----E---SQIYSQCN  236 (331)
Q Consensus       171 liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G-------~~hv~NN~~~n~~~~~~~~~~----~---a~v~~e~N  236 (331)
                      -+.+...  ....-+|++.+|.+.....    +..|       .+.+.|+.+.+.. +++..-.    +   .++.+|+.
T Consensus       227 aiks~~~--~~~s~nI~I~n~~~~~ghG----isiGSe~~~v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~ni~f~ni  299 (376)
T 1bhe_A          227 AIKAYKG--RAETRNISILHNDFGTGHG----MSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNV  299 (376)
T ss_dssp             EEEECTT--SCCEEEEEEEEEEECSSSC----EEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEE
T ss_pred             EEcccCC--CCCceEEEEEeeEEEcccc----EEeccCCccEeeEEEEeeEEeCCC-cEEEEEEecCCCceEeeEEEEeE
Confidence            5543110  0123489999998875321    3332       4688999888754 4543221    1   24566666


Q ss_pred             EEecCCcce
Q 020121          237 IYEAGQKKR  245 (331)
Q Consensus       237 ~f~~~~~~~  245 (331)
                      .+++...+.
T Consensus       300 ~~~~v~~~i  308 (376)
T 1bhe_A          300 VMKNVAKPI  308 (376)
T ss_dssp             EEESCSEEE
T ss_pred             EEeCCCceE
Confidence            666655443

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=98.12  E-value=1.7e-05  Score=76.25  Aligned_cols=97  Identities=21%  Similarity=0.321  Sum_probs=71.7

Q ss_pred             cEEEeeeccEEEeeeEEecCC-------------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccE
Q 020121           96 GLRLKECEHVIICNLEFEGGR-------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY  162 (331)
Q Consensus        96 gi~i~~~~NVIIrnL~i~~g~-------------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~  162 (331)
                      +|.+..++||.|++++|....             ....|||.+. .+++|+|++|.+....|. +.++. +.+|+|++|.
T Consensus       129 ~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~  205 (349)
T 1hg8_A          129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVTS-GTNIVVSNMY  205 (349)
T ss_dssp             EEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEESS-EEEEEEEEEE
T ss_pred             eEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEc-cccEEEEEeeEEecCCCe-EEeeC-CeEEEEEeEE
Confidence            356667899999999998631             2458999997 899999999999966554 68864 6999999999


Q ss_pred             EeccCceeeecCCCCCCCCcceEEEEeceeecCC
Q 020121          163 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       163 f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      +... .+.-||+........--+|++.++.|.++
T Consensus       206 ~~~g-hGisiGS~G~~~~~~v~nV~v~n~~~~~~  238 (349)
T 1hg8_A          206 CSGG-HGLSIGSVGGKSDNVVDGVQFLSSQVVNS  238 (349)
T ss_dssp             EESS-CCEEEEEESSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeCC-cceEEccccccccCCEEEEEEEEEEEECC
Confidence            9852 25667763211122235899999988764

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.07  E-value=6.1e-05  Score=72.81  Aligned_cols=122  Identities=11%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             cceeeeeeccceEEecCc-----------------EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec
Q 020121           79 SYKTIDGRGQRIKLTGKG-----------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD  141 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~g-----------------i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~  141 (331)
                      +|++|.|.+. .+|.|.|                 |.+.+++||.|++|+++....   -+|.+.  +++|.|++|.+..
T Consensus        95 ~nv~I~G~~~-g~IdG~G~~~w~~~~~~~~~rP~~i~~~~~~nv~i~~iti~nsp~---~~i~i~--~~nv~i~~~~I~~  168 (362)
T 1czf_A           95 EHITVTGASG-HLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPL---MAFSVQ--ANDITFTDVTINN  168 (362)
T ss_dssp             ESCEEEECTT-CEEECCGGGTCCSCTTSSSCCCCCEEEEEEETEEEESCEEECCSS---CCEEEE--CSSEEEESCEEEC
T ss_pred             ccEEEEcCCC-cEEECCCchhhcccCCCCCCCCeEEEEeecccEEEEEEEEecCCc---cEEEEe--eCCEEEEEEEEEC
Confidence            6788888522 2566553                 788889999999999998644   358885  8999999999974


Q ss_pred             ---------CCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc------ccC
Q 020121          142 ---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL------RFG  206 (331)
Q Consensus       142 ---------~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~------r~G  206 (331)
                               ..|| +|+. .+++|+|++|.|...+-+.-++++        .+|++.++.+.....  =.+      ..+
T Consensus       169 ~~~d~~~~~NtDG-idi~-~s~nV~I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~G~~~~~  236 (362)
T 1czf_A          169 ADGDTQGGHNTDA-FDVG-NSVGVNIIKPWVHNQDDCLAVNSG--------ENIWFTGGTCIGGHG--LSIGSVGDRSNN  236 (362)
T ss_dssp             GGGGTTTCCSCCS-EEEC-SCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSCC--EEEEEECSSSCC
T ss_pred             CccccccCCCCCc-eeec-CcceEEEEeeEEecCCCEEEEeCC--------eEEEEEEEEEeCCce--eEEeeccccCCC
Confidence                     2677 4884 689999999999987777777753        379999998876321  111      112


Q ss_pred             ---eEEEEcceEecc
Q 020121          207 ---KVHLYNNYTRNW  218 (331)
Q Consensus       207 ---~~hv~NN~~~n~  218 (331)
                         .+++.|+.+.+.
T Consensus       237 ~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          237 VVKNVTIEHSTVSNS  251 (362)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEeeEEECC
Confidence               357778877764

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=98.02  E-value=0.00024  Score=68.16  Aligned_cols=141  Identities=18%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             CCceEEcCCCceEEEeeeeeecC------------CCCeeeeecCCceEEEeccEEeccCceee-ecCCCCCCCCcceEE
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRDY------------DDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRV  186 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~~------------~Dg~~di~~~s~~vTiS~n~f~~h~k~~l-iG~~~~~~~d~~~~v  186 (331)
                      +.+|.|. +++||+|-|+.|...            .|+ |.+. ++++|-|-+|.|+...-+++ +..       ....|
T Consensus        82 G~Gi~I~-~a~NVIIrnl~i~~~~~~~~~~~~~~~~Da-I~i~-~s~nVWIDHcs~s~~~Dg~idi~~-------~s~~v  151 (340)
T 3zsc_A           82 GGGLVIK-DAQNVIIRNIHFEGFYMEDDPRGKKYDFDY-INVE-NSHHIWIDHITFVNGNDGAVDIKK-------YSNYI  151 (340)
T ss_dssp             EEEEEEE-SCEEEEEESCEEECCCCTTCTTSCSSCCCS-EEEE-SCEEEEEESCEEESCSSCSEEEET-------TCEEE
T ss_pred             cCceEEE-cCceEEEeCeEEECCccccCccCCcCCCCe-EEEe-cCCcEEEEeeeeccCCccceEEec-------CCceE
Confidence            3678886 789999999999864            233 4663 58899999999986543333 211       12389


Q ss_pred             EEeceeecCCCCCCccccc------------CeEEEEcceEeccccceeeeccCceEEEEceEEecCCccee----eeee
Q 020121          187 TIHHCLFDGTRQRHPRLRF------------GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRT----FEYY  250 (331)
Q Consensus       187 T~hhN~f~~~~~R~Pr~r~------------G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~----~~~~  250 (331)
                      |+.+|+|.++..-+ ++..            -++.+.+|+|.+...+.=..+ ...+-+.+|||.++.++..    +..+
T Consensus       152 TISnn~f~~h~k~~-LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r-~G~~Hv~NN~~~n~~~~~~~~~~~~~y  229 (340)
T 3zsc_A          152 TVSWNKFVDHDKVS-LVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIR-FGMAHVFNNFYSMGLRTGVSGNVFPIY  229 (340)
T ss_dssp             EEESCEEESCSBCC-EECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEE-SSEEEEESCEEECCCCCSCSSCCSCCE
T ss_pred             EEECcEeccCceee-EeCcCCCCccccccCCcEEEEECeEecCCCCCCCccc-CCeEEEEccEEECCccccccccceeee
Confidence            99999998754322 2211            268899999998765543333 2366778999998432211    1110


Q ss_pred             eccccCccccCccEEEEcCCeEEcCcc
Q 020121          251 TEKAADKLEAKSGLIRSEGDIFLKGAQ  277 (331)
Q Consensus       251 ~~~~~~~~~~~~g~~~~~~n~~~ng~~  277 (331)
                      .     ........+..++|.|.+...
T Consensus       230 a-----i~~~~~a~i~~E~N~F~~~~~  251 (340)
T 3zsc_A          230 G-----VASAMGAKVHVEGNYFMGYGA  251 (340)
T ss_dssp             E-----EEEETTCEEEEESCEEECSCH
T ss_pred             e-----EecCCCCEEEEECcEEECCCc
Confidence            0     011244577889999998755

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=98.00  E-value=0.00022  Score=68.96  Aligned_cols=140  Identities=18%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             CCceEEcCCCceEEEeeeeeec-------CCCCeeeeecCCceEEEeccEEeccCceee-ecCCCCCCCCcceEEEEece
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRD-------YDDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRVTIHHC  191 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~-------~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l-iG~~~~~~~d~~~~vT~hhN  191 (331)
                      +.+|.|...++||+|.|+.|..       ..|++ .+. ++++|-|-+|.|+.-...++ .+..      ....||+.+|
T Consensus       123 G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI-~i~-~s~nvwIDHcs~s~~~d~~~~~~~~------~s~~vTISnn  194 (359)
T 1qcx_A          123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAI-TVD-DSDLVWIDHVTTARIGRQHIVLGTS------ADNRVTISYS  194 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCSE-EEE-SCCCEEEESCEEEEESSCSEEECSS------CCEEEEEESC
T ss_pred             cceEEEecCCCCEEEeCcEEEecCCcccccCcee-Eec-CCceEEEEeeEeeccCcCceeeccc------ccccEEEECc
Confidence            3568884368999999999975       34554 664 68999999999985433333 2221      1248999999


Q ss_pred             eecCCCCCCcc--------c-ccC---eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeeeeeccccCccc
Q 020121          192 LFDGTRQRHPR--------L-RFG---KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  259 (331)
Q Consensus       192 ~f~~~~~R~Pr--------~-r~G---~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~  259 (331)
                      +|.+......+        . =.|   .+.+.+|+|.+...+.-..+.+..+.+.+|||.+-..- .+          ..
T Consensus       195 ~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~-a~----------~~  263 (359)
T 1qcx_A          195 LIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGH-AF----------EI  263 (359)
T ss_dssp             EEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEE-EE----------EE
T ss_pred             EecCCccccccCcccccceeEEecCCCCeehcccEeccCcccCceecCCceEEEEccEEECccCe-EE----------ec
Confidence            99864432111        1 113   57899999998765443344445677889999863211 00          11


Q ss_pred             cCccEEEEcCCeEEcCccc
Q 020121          260 AKSGLIRSEGDIFLKGAQA  278 (331)
Q Consensus       260 ~~~g~~~~~~n~~~ng~~~  278 (331)
                      .....+..++|.|.++..+
T Consensus       264 ~~~~~i~~e~N~F~~~~~~  282 (359)
T 1qcx_A          264 GTGGYVLAEGNVFQDVNVV  282 (359)
T ss_dssp             CTTEEEEEESCEEEEEEEE
T ss_pred             CCCceEEEEeeEEECCCcc
Confidence            2345677889999887654

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=97.97  E-value=0.00027  Score=67.97  Aligned_cols=137  Identities=12%  Similarity=0.032  Sum_probs=87.7

Q ss_pred             ecCcEEEeeeccEEEeeeEEecCCCCCCCce-EEcCCCceEEEeeeeeecCCCCeeeeecC------CceEEEeccEE-e
Q 020121           93 TGKGLRLKECEHVIICNLEFEGGRGHDVDGI-QIKPNSRHIWIDRCSLRDYDDGLIDITRQ------STDITVSRCYF-T  164 (331)
Q Consensus        93 ~G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I-~i~~~~~nVwIDHcs~s~~~Dg~~di~~~------s~~vTiS~n~f-~  164 (331)
                      .+.+|.+.+++||+|.|..|..+    .|++ .+...+++|-|.+|.|.....+++--..+      .-.||+.+|+| .
T Consensus       149 ~~DaI~i~~s~nVwIDHcs~s~~----~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~  224 (346)
T 1pxz_A          149 DGDAITMRNVTNAWIDHNSLSDC----SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGP  224 (346)
T ss_dssp             CCCSEEEESCEEEEEESCEEECC----SSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECS
T ss_pred             CCCEEEEecCceEEEEeeEEecC----CCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeC
Confidence            35679998999999999999953    5776 56447899999999998755444432211      23899999999 4


Q ss_pred             ccC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEecccc---ceeeecc---------Cce
Q 020121          165 QHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGI---YAVCASV---------ESQ  230 (331)
Q Consensus       165 ~h~-k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~---~~~~~~~---------~a~  230 (331)
                      +.. ..-.+..         -.+-+.+|+|.+...+.=..+. .++.+.||||.+...   -.+..+.         +-.
T Consensus       225 ~~~~R~Pr~r~---------g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~  295 (346)
T 1pxz_A          225 NAGQRMPRARY---------GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV  295 (346)
T ss_dssp             SEEECTTEEES---------SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSC
T ss_pred             CccccCccEec---------ceEEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCcccccccc
Confidence            321 1111211         1577899999886544322222 468999999987532   1111111         113


Q ss_pred             EEEEceEEecCC
Q 020121          231 IYSQCNIYEAGQ  242 (331)
Q Consensus       231 v~~e~N~f~~~~  242 (331)
                      ..++++.|.++.
T Consensus       296 ~~~~g~~~~nG~  307 (346)
T 1pxz_A          296 WRSTRDAFINGA  307 (346)
T ss_dssp             EEEESCEEETTC
T ss_pred             EecCCCeEEece
Confidence            566777777764

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=97.94  E-value=0.00023  Score=70.69  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=84.3

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec---CCCCeeeeecCCceEEEeccEEeccCceeeec
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDITVSRCYFTQHDKTMLIG  173 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~---~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG  173 (331)
                      |.+.+++||.|++|+++....   -.|.+. .+++|.|+++++..   ..||+ |+. .+++|+|++|.|...+-+.-+.
T Consensus       193 i~~~~~~nv~i~giti~nsp~---~~i~~~-~~~nv~i~~v~I~~~~~NtDGi-di~-~s~nV~I~n~~i~~gDDcIaik  266 (448)
T 3jur_A          193 VQFYRCRNVLVEGVKIINSPM---WCIHPV-LSENVIIRNIEISSTGPNNDGI-DPE-SCKYMLIEKCRFDTGDDSVVIK  266 (448)
T ss_dssp             EEEESCEEEEEESCEEESCSS---CSEEEE-SCEEEEEESCEEEECSTTCCSB-CCB-SCEEEEEESCEEEESSEEEEEB
T ss_pred             EEEEcccceEEEeeEEEeCCC---ceEeee-ccCCEEEEeEEEeeccCCCccc-ccc-CCcCEEEEeeEEEeCCCcEEec
Confidence            678889999999999997644   368887 79999999999975   67886 884 6899999999999877777665


Q ss_pred             CCCCC----CCCcceEEEEeceeecCCCCCCccccc-----C---eEEEEcceEeccccceee
Q 020121          174 ADPSH----VGDRCIRVTIHHCLFDGTRQRHPRLRF-----G---KVHLYNNYTRNWGIYAVC  224 (331)
Q Consensus       174 ~~~~~----~~d~~~~vT~hhN~f~~~~~R~Pr~r~-----G---~~hv~NN~~~n~~~~~~~  224 (331)
                      +....    ...-.-+|++.+|++.+...+. -+..     +   .+++.|+++.+.. +++.
T Consensus       267 sg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~-gisiGS~~~~~v~nV~v~n~~~~~t~-~Gir  327 (448)
T 3jur_A          267 SGRDADGRRIGVPSEYILVRDNLVISQASHG-GLVIGSEMSGGVRNVVARNNVYMNVE-RALR  327 (448)
T ss_dssp             CCCHHHHHHHCCCEEEEEEESCEEECSSCSE-EEEECSSCTTCEEEEEEESCEEESCS-EEEE
T ss_pred             cCccccccccCCCceeEEEEEeEEecCCCcc-eEEECCcccCcEEEEEEEEEEEeccc-ceEE
Confidence            43110    0000247899888873322221 1211     1   4688999887653 4553

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.91  E-value=0.0001  Score=70.59  Aligned_cols=93  Identities=17%  Similarity=0.345  Sum_probs=69.7

Q ss_pred             EEEeeecc-EEEeeeEEecCC------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCce
Q 020121           97 LRLKECEH-VIICNLEFEGGR------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT  169 (331)
Q Consensus        97 i~i~~~~N-VIIrnL~i~~g~------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~  169 (331)
                      |.+..++| |.|+||+|+...      ....|||.+  .++||+|.+|.+....| .+.++.+ .+|+|++|.+... .+
T Consensus       122 i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi--~s~nV~I~n~~i~~gDD-cIaiksg-~nI~i~n~~~~~g-hG  196 (335)
T 1k5c_A          122 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV--SANNVTIQNCIVKNQDD-CIAINDG-NNIRFENNQCSGG-HG  196 (335)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE--ECSSEEEESCEEESSSC-SEEEEEE-EEEEEESCEEESS-CC
T ss_pred             EEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc--cCCeEEEEeeEEEcCCC-EEEeeCC-eeEEEEEEEEECC-cc
Confidence            55666888 999999999752      456899999  58999999999986655 5688754 8999999999863 25


Q ss_pred             eeecCCCCCCCCcceEEEEeceeecCC
Q 020121          170 MLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       170 ~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      .-||+...  ...--+|++.++.|.++
T Consensus       197 isIGS~g~--~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          197 ISIGSIAT--GKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             EEEEEECT--TCEEEEEEEESCEEEEE
T ss_pred             CeEeeccC--CCCEEEEEEEeeEEECC
Confidence            66776431  11224789988888764

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=97.83  E-value=0.001  Score=68.45  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=92.6

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec----CCCCeeeeecCCceEEEeccEEeccCceeee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  172 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~li  172 (331)
                      |.+.+++||.|++|+|+....   -+|.+. .+++|.|+++.+..    ..||+ |+. .+++|+|++|.|...+-+.-+
T Consensus       334 i~~~~~~nv~I~giti~ns~~---~~i~~~-~~~nv~i~~v~i~~~~~~NtDGi-di~-~s~nV~I~n~~i~~gDD~Iai  407 (608)
T 2uvf_A          334 MTLRGVENVYLAGFTVRNPAF---HGIMNL-ENHNVVANGLIHQTYDANNGDGI-EFG-NSQNVMVFNNFFDTGDDCINF  407 (608)
T ss_dssp             EEEESEEEEEEESCEEECCSS---CSEEEE-SCEEEEEESCEEECTTCTTCCSE-EEE-SCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEeeeeEEEeCcEEecCCC---CEEEEe-cCCCEEEeeEEEcCCCCCCCCeE-Eec-CCceEEEEeeEEecCCceEEe
Confidence            667789999999999998643   468887 89999999999864    46775 884 789999999999987776666


Q ss_pred             cCC-CCC-CCC-cceEEEEeceeecCCCCCCcccc----cC--eEEEEcceEeccccceeeec-----cC--ceEEEEce
Q 020121          173 GAD-PSH-VGD-RCIRVTIHHCLFDGTRQRHPRLR----FG--KVHLYNNYTRNWGIYAVCAS-----VE--SQIYSQCN  236 (331)
Q Consensus       173 G~~-~~~-~~d-~~~~vT~hhN~f~~~~~R~Pr~r----~G--~~hv~NN~~~n~~~~~~~~~-----~~--a~v~~e~N  236 (331)
                      .+. +.. ... ..-+|++.+|.+.+...-. .+.    .+  .+++.|+.+.+.. +++...     .+  .+|.+|++
T Consensus       408 ksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~-~iGS~~~~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni  485 (608)
T 2uvf_A          408 AAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI-VTGSHTGAWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNN  485 (608)
T ss_dssp             ECCCSGGGGGSCCEEEEEEESCEECSSSCSE-EEESCCTTCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEE
T ss_pred             cCCcCccccccccccCEEEEeEEEeCCCCeE-EEcccCCCCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEee
Confidence            332 110 001 1248999999887643210 011    11  4789999998863 455331     11  35666666


Q ss_pred             EEecC
Q 020121          237 IYEAG  241 (331)
Q Consensus       237 ~f~~~  241 (331)
                      .+++.
T Consensus       486 ~m~~v  490 (608)
T 2uvf_A          486 AMRDL  490 (608)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            66665

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.80  E-value=0.00076  Score=64.76  Aligned_cols=111  Identities=16%  Similarity=0.206  Sum_probs=80.1

Q ss_pred             EEE-e-eeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC-----------------CCCeeeeecCCceEE
Q 020121           97 LRL-K-ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-----------------DDGLIDITRQSTDIT  157 (331)
Q Consensus        97 i~i-~-~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~-----------------~Dg~~di~~~s~~vT  157 (331)
                      |.+ . .++||.|++|+|+...   ..+|.+. .+++|.|+++++...                 .|| +|+ ..+++|+
T Consensus       105 i~~~~~~~~nv~I~giti~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDG-id~-~~s~nV~  178 (349)
T 1hg8_A          105 FIVVQKTTGNSKITNLNIQNWP---VHCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVT  178 (349)
T ss_dssp             EEEEEEEESSEEEESCEEECCS---SEEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEE
T ss_pred             EEEeecCcCcEEEEEEEEEcCC---CceEEEe-ccCCEEEEEEEEECCCCccccccccccccCCCCCe-EEE-ccccEEE
Confidence            667 6 6779999999999753   4678997 899999999999742                 566 477 4689999


Q ss_pred             EeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc------ccC---eEEEEcceEeccccceee
Q 020121          158 VSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL------RFG---KVHLYNNYTRNWGIYAVC  224 (331)
Q Consensus       158 iS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~------r~G---~~hv~NN~~~n~~~~~~~  224 (331)
                      |++|.|...+-+.-+.++        .+|++.++.+.+...  =.+      ..+   .+++.|+.+.+.. .++.
T Consensus       179 I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~G~~~~~~v~nV~v~n~~~~~~~-~Gir  243 (349)
T 1hg8_A          179 LDNNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHG--LSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCR  243 (349)
T ss_dssp             EEEEEEECSSCSEEESSE--------EEEEEEEEEEESSCC--EEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEE
T ss_pred             EEeeEEecCCCeEEeeCC--------eEEEEEeEEEeCCcc--eEEccccccccCCEEEEEEEEEEEECCC-cEEE
Confidence            999999877766666553        378898888865321  111      112   3578888877643 3443

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=97.74  E-value=0.0002  Score=71.43  Aligned_cols=116  Identities=13%  Similarity=0.054  Sum_probs=77.3

Q ss_pred             cceeeeeeccceEEecCc--------EEEeeeccEEEeeeEEecCCCC---------CCCceEEcCCCceEEEeeeeeec
Q 020121           79 SYKTIDGRGQRIKLTGKG--------LRLKECEHVIICNLEFEGGRGH---------DVDGIQIKPNSRHIWIDRCSLRD  141 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~g--------i~i~~~~NVIIrnL~i~~g~~~---------~~D~I~i~~~~~nVwIDHcs~s~  141 (331)
                      .|++|.|.|...+|.|.|        |.+.+++||.|++|+|+..+.-         +.|||.+  .++||+|.+|.+..
T Consensus       109 ~nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w~ih~s~~V~i~NtDGi~i--~s~nV~I~n~~I~~  186 (464)
T 1h80_A          109 RNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH--WSRNGIIERIKQNN  186 (464)
T ss_dssp             EEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEE--EEEEEEEEEEEEES
T ss_pred             cceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccceEeeceeeeeecCCCcee--eccCEEEeceEEec
Confidence            466777776444666653        5677899999999999875431         2477777  48999999999998


Q ss_pred             CCCCee-eeecCCceEEEeccEEeccCceeeecCCC----CCCCCcceEEEEeceeecCCC
Q 020121          142 YDDGLI-DITRQSTDITVSRCYFTQHDKTMLIGADP----SHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       142 ~~Dg~~-di~~~s~~vTiS~n~f~~h~k~~liG~~~----~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      ..|+.- .....+.+|+|++|.|.. ..+.-|...+    .......-+|+|.++.|.+..
T Consensus       187 gddgiGs~~~~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv~  246 (464)
T 1h80_A          187 ALFGYGLIQTYGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGL  246 (464)
T ss_dssp             CCTTCEEEEESEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSS
T ss_pred             CCCeEEecccCCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECCc
Confidence            766542 223568899999999887 3333232211    000111247888888887753

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=97.74  E-value=0.002  Score=61.21  Aligned_cols=110  Identities=15%  Similarity=0.264  Sum_probs=77.0

Q ss_pred             hHHHHhhcCCC----eEEEEEeeeEEEeCceeEec---cceeeeeecc-ceEEecC-------------cEEEeeeccEE
Q 020121           48 SLREGCRRREP----LWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ-RIKLTGK-------------GLRLKECEHVI  106 (331)
Q Consensus        48 sLr~ai~~~~p----r~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~-g~~i~G~-------------gi~i~~~~NVI  106 (331)
                      ++++||++..+    |.+|+=..|+-+  +.|.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        21 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   97 (319)
T 1gq8_A           21 TVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTCE
T ss_pred             CHHHHHHhccccCCceEEEEEcCCeEe--eeeeccCCCccEEEEEcCCCccEEEecccccCCCCccceEEEEEE-CCCEE
Confidence            79999976322    333332356554  567775   6799999974 4456543             37775 89999


Q ss_pred             EeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          107 ICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       107 IrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      ++||+|++..+   ...-||.+.  ++++.|.+|.|....|.++.-.   ....+.+|.|..
T Consensus        98 ~~nlt~~Nt~g~~~~qAvAl~v~--~d~~~f~~c~f~g~QDTLy~~~---~r~~~~~c~I~G  154 (319)
T 1gq8_A           98 ARDITFQNTAGAAKHQAVALRVG--SDLSAFYRCDILAYQDSLYVHS---NRQFFINCFIAG  154 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEEC--CTTEEEEEEEEECSTTCEEECS---SEEEEESCEEEE
T ss_pred             EEEeEeEccCCCcCCceEEEEec--CCcEEEEEeEECccceeeeecC---ccEEEEecEEEe
Confidence            99999997542   345677774  6789999999999999876432   234777888774

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=97.71  E-value=0.0024  Score=60.64  Aligned_cols=110  Identities=19%  Similarity=0.314  Sum_probs=76.1

Q ss_pred             hHHHHhhcCCC----eEEEEEeeeEEEeCceeEec---cceeeeeecc-ceEEecC-------------cEEEeeeccEE
Q 020121           48 SLREGCRRREP----LWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ-RIKLTGK-------------GLRLKECEHVI  106 (331)
Q Consensus        48 sLr~ai~~~~p----r~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~-g~~i~G~-------------gi~i~~~~NVI  106 (331)
                      ++++||++..+    |.+|+=..|+-+  +.+.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        17 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   93 (317)
T 1xg2_A           17 TLAEAVAAAPDKSKTRYVIYVKRGTYK--ENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAV-GQGFI   93 (317)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEEC-STTCE
T ss_pred             cHHHHHhhcccCCCceEEEEEcCCEEe--eeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEEE-CCCEE
Confidence            69999976322    333332356554  567774   6799999974 4556543             27775 89999


Q ss_pred             EeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          107 ICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       107 IrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      ++||+|++..+   ...-||.+.  ++++.+.+|.|....|.++.-.   ..-.+.+|.|..
T Consensus        94 ~~~lt~~Nt~g~~~~qAvAl~v~--~d~~~f~~c~f~g~QDTLy~~~---~r~~~~~c~I~G  150 (317)
T 1xg2_A           94 LQDICIQNTAGPAKDQAVALRVG--ADMSVINRCRIDAYQDTLYAHS---QRQFYRDSYVTG  150 (317)
T ss_dssp             EESCEEEECCCGGGCCCCSEEEC--CTTEEEESCEEECSTTCEEECS---SEEEEESCEEEE
T ss_pred             EEEeEEecccCCccCceEEEEEe--CCcEEEEEeEeCccccceeecC---ccEEEEeeEEEe
Confidence            99999997642   345677774  6789999999999999875432   233667777764

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.64  E-value=0.00014  Score=74.37  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             cceeeeeeccceEEecC---cEEEeeeccE--EEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCC
Q 020121           79 SYKTIDGRGQRIKLTGK---GLRLKECEHV--IICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS  153 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~---gi~i~~~~NV--IIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s  153 (331)
                      .|++|.|.    +|.+.   .+.+..|+||  .|+++++.....+..|||.+.   +||.|.+|.|..+.| +|.++  +
T Consensus       333 ~NV~I~Gi----ti~NSp~w~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~---~NV~I~nc~I~~gDD-cIaIk--s  402 (574)
T 1ogo_X          333 QTWYCVGP----TINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY---PNSVVHDVFWHVNDD-AIKIY--Y  402 (574)
T ss_dssp             EEEEEESC----EEECCSSCSEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC---TTCEEEEEEEEESSC-SEECC--S
T ss_pred             eeEEEECe----EEECCCCcEEeecCCCChhhEEEeeEeeCCCCCCCccCccc---CCEEEEeeEEECCCC-EEEEC--C
Confidence            46666663    45543   3667789999  999999886444458999885   899999999999988 55775  4


Q ss_pred             ceEEEeccEEec-cCce-eeecCCCCCCCCcceEEEEeceeecCC
Q 020121          154 TDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       154 ~~vTiS~n~f~~-h~k~-~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      .||+|++|.+.. |.-+ .-+|++..    .--+|++.++.+.++
T Consensus       403 ~NI~I~nc~i~~g~g~g~IsIGS~~g----~V~NV~v~N~~i~~~  443 (574)
T 1ogo_X          403 SGASVSRATIWKCHNDPIIQMGWTSR----DISGVTIDTLNVIHT  443 (574)
T ss_dssp             TTCEEEEEEEEECSSSCSEECCSSCC----CEEEEEEEEEEEEEC
T ss_pred             ccEEEEeEEEECCCCCceEEEcCCCC----cEEEEEEEeEEEECC
Confidence            999999999864 5555 67787421    123788888877654

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.61  E-value=0.0019  Score=61.64  Aligned_cols=140  Identities=19%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             cCcEEEee-eccEEEeeeEEecCC--C---CCCC-ceEEcCCCceEEEeeeeeecCCCCeeeeecC-----CceEEEecc
Q 020121           94 GKGLRLKE-CEHVIICNLEFEGGR--G---HDVD-GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ-----STDITVSRC  161 (331)
Q Consensus        94 G~gi~i~~-~~NVIIrnL~i~~g~--~---~~~D-~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~-----s~~vTiS~n  161 (331)
                      +.+|.+.. ++||+|.|..|..+.  .   ...| .|.+..++++|=|-+|-|.+....+|--..+     ..+||+-+|
T Consensus       120 ~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~~~~~vT~~~N  199 (326)
T 3vmv_A          120 GTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDKITYHHN  199 (326)
T ss_dssp             SCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEECEEECSSSCGGGCCEEEEEESC
T ss_pred             CCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCceEEEECCCCCCcccCccEEEEee
Confidence            45688885 899999999997432  1   1124 4567556899999999998755555432211     137999999


Q ss_pred             EEeccC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccc-----------ccee----e
Q 020121          162 YFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWG-----------IYAV----C  224 (331)
Q Consensus       162 ~f~~h~-k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~-----------~~~~----~  224 (331)
                      +|.+.. +.=++...         .+-+.+|+|.+...+.-..+. .++-+.||||.+.+           ...+    .
T Consensus       200 ~f~~~~~R~Pr~r~G---------~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 3vmv_A          200 YFNNLNSRVPLIRYA---------DVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYG  270 (326)
T ss_dssp             EEEEEEECTTEEESC---------EEEEESCEEEEESSCSEEEETTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSC
T ss_pred             EecCCcCcCCcccCC---------cEEEEccEEECCCceEEeecCCcEEEEEceEEECCcCccccccccccccceeeccC
Confidence            997532 11112111         456789999887666544444 47899999999872           1111    1


Q ss_pred             eccCceEEEEceEEecCC
Q 020121          225 ASVESQIYSQCNIYEAGQ  242 (331)
Q Consensus       225 ~~~~a~v~~e~N~f~~~~  242 (331)
                      ....+....++|.|.+..
T Consensus       271 s~~~g~~~~~~n~~~n~~  288 (326)
T 3vmv_A          271 SPSTGYWNLRGNVFVNTP  288 (326)
T ss_dssp             SSSBCEEEEESCEEESSC
T ss_pred             CCCceEEEEECCeEccCc
Confidence            223345667899998653

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=97.53  E-value=0.0045  Score=59.31  Aligned_cols=113  Identities=9%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             chHHHHhhcCCC---eEEEEEeeeEEEeCceeEec-cceeeeeecc-ceEEecC-------------------cEEEeee
Q 020121           47 GSLREGCRRREP---LWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQ-RIKLTGK-------------------GLRLKEC  102 (331)
Q Consensus        47 GsLr~ai~~~~p---r~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~-g~~i~G~-------------------gi~i~~~  102 (331)
                      -++++||++..+   |.+|+=..|+-+  +.|.|. +++||.|.|. ...|.+.                   .|.+. +
T Consensus        19 ~TIq~Ai~aap~~~~~~~I~I~~G~Y~--E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~v~-a   95 (342)
T 2nsp_A           19 KTIADAIASAPAGSTPFVILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS-A   95 (342)
T ss_dssp             SSHHHHHHTSCSSSSCEEEEECSEEEE--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC-S
T ss_pred             chHHHHHHhcccCCCcEEEEEeCCEEE--EEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEEEE-C
Confidence            579999976432   233332456654  457775 6899999974 4455432                   36675 8


Q ss_pred             ccEEEeeeEEecCC-----------------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          103 EHVIICNLEFEGGR-----------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       103 ~NVIIrnL~i~~g~-----------------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      ++++++||+|++..                 ....-||.+...++++.+.+|.|....|.++.-   ....-+.+|.|..
T Consensus        96 ~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~---~gr~~~~~c~I~G  172 (342)
T 2nsp_A           96 KDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVS---GGRSFFSDCRISG  172 (342)
T ss_dssp             BSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             CCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEEC---CCCEEEEcCEEEe
Confidence            99999999999754                 112345533446889999999999999987644   2366778888774

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.41  E-value=0.00058  Score=65.24  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=76.9

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCce-EEEeeeeeec----------CCCCeeeeecCCceEEEeccEEec
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRH-IWIDRCSLRD----------YDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~n-VwIDHcs~s~----------~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      |.+.+++ |.|++|+++....   ..|.+. .+++ |.|+++.+..          ..||. |+  .+++|+|++|.|..
T Consensus       100 i~~~~~~-v~i~giti~nsp~---~~i~i~-~~~n~v~i~~v~I~~~~~d~~~~~~NtDGi-di--~s~nV~I~n~~i~~  171 (335)
T 1k5c_A          100 FLKIKGS-GTYKKFEVLNSPA---QAISVG-PTDAHLTLDGITVDDFAGDTKNLGHNTDGF-DV--SANNVTIQNCIVKN  171 (335)
T ss_dssp             SEEEEEE-EEEESCEEESCSS---CCEEEE-EEEEEEEEESCEEECGGGGGGGCCCSCCSE-EE--ECSSEEEESCEEES
T ss_pred             EEEeceE-EEEEEEEEECCCc---ceEEEE-ccCCeEEEEEEEEECCCCcccccCCCCCeE-cc--cCCeEEEEeeEEEc
Confidence            6777788 9999999998643   568887 7899 9999999964          35774 88  69999999999998


Q ss_pred             cCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccc----cC---eEEEEcceEecc
Q 020121          166 HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR----FG---KVHLYNNYTRNW  218 (331)
Q Consensus       166 h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r----~G---~~hv~NN~~~n~  218 (331)
                      .+-+.-++++        .+|++.++.+.....  =.+.    .+   .+++.|+.+.+.
T Consensus       172 gDDcIaiksg--------~nI~i~n~~~~~ghG--isIGS~g~~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          172 QDDCIAINDG--------NNIRFENNQCSGGHG--ISIGSIATGKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             SSCSEEEEEE--------EEEEEESCEEESSCC--EEEEEECTTCEEEEEEEESCEEEEE
T ss_pred             CCCEEEeeCC--------eeEEEEEEEEECCcc--CeEeeccCCCCEEEEEEEeeEEECC
Confidence            7766666543        378998888876332  1221    12   356777777664

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.41  E-value=0.0047  Score=59.59  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=89.3

Q ss_pred             CCceEEcCCCceEEEeeeeeec-------CCCCeeeeecCCceEEEeccEEeccCceee-ecCCCCCCCCcceEEEEece
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRD-------YDDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRVTIHHC  191 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~-------~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l-iG~~~~~~~d~~~~vT~hhN  191 (331)
                      +.+|.|...++||+|.++.|..       ..|++ .+. ++++|-|-+|.|+.....++ .|..      ....||+.+|
T Consensus       123 G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI-~i~-~s~nVwIDHcs~s~~~d~~~~~g~~------~s~~VTISnn  194 (359)
T 1idk_A          123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAI-TLD-DCDLVWIDHVTTARIGRQHYVLGTS------ADNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCSE-EEC-SCEEEEEESCEEEEESSCSEEECCC------TTCEEEEESC
T ss_pred             cceEEEecCCCcEEEeCeEEEcccccccccCCce-eec-CCCcEEEEeeEeecCCCCcEEeccc------CcceEEEECc
Confidence            4568885368999999999985       44664 663 68999999999985433332 2221      1238999999


Q ss_pred             eecCCCCC-------Cc-ccc-cC---eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeeeeeccccCccc
Q 020121          192 LFDGTRQR-------HP-RLR-FG---KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  259 (331)
Q Consensus       192 ~f~~~~~R-------~P-r~r-~G---~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~  259 (331)
                      +|.+....       +- ..- .|   .+.+.+|+|.+...+.=..+.+..+.+-+|||.+-..-. +          ..
T Consensus       195 ~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~-i----------~~  263 (359)
T 1idk_A          195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHA-F----------EI  263 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEE-E----------EE
T ss_pred             EecCCcccccccCccccceEEEEecCCCeEEEceEeecCcccCccccCCceEEEECCEEecccceE-E----------ec
Confidence            99854421       11 111 13   688999999987655434444445778899998632111 0          01


Q ss_pred             cCccEEEEcCCeEEcCccc
Q 020121          260 AKSGLIRSEGDIFLKGAQA  278 (331)
Q Consensus       260 ~~~g~~~~~~n~~~ng~~~  278 (331)
                      .....+..++|.|.++..+
T Consensus       264 ~~~~~i~~e~N~F~~~~~p  282 (359)
T 1idk_A          264 GEGGYVLAEGNVFQNVDTV  282 (359)
T ss_dssp             CTTCEEEEESCEEEEEEEE
T ss_pred             cCCcEEEEEccEEECCCCc
Confidence            1334677788888876543

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=97.36  E-value=0.0007  Score=68.89  Aligned_cols=104  Identities=10%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             ceeeeeeccceEEecCc---EEEe-ee-cc--EEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC
Q 020121           80 YKTIDGRGQRIKLTGKG---LRLK-EC-EH--VIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ  152 (331)
Q Consensus        80 n~TI~G~g~g~~i~G~g---i~i~-~~-~N--VIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~  152 (331)
                      |++|.|    ++|.+..   +.+. .+ +|  |.|+|+++.....+..|||.+.   +||.|++|.|..+.| ++.++. 
T Consensus       294 nV~I~G----iti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~---~nV~I~n~~i~~gDD-cIaIks-  364 (549)
T 1x0c_A          294 TFVLNG----VTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY---PGTILQDVFYHTDDD-GLKMYY-  364 (549)
T ss_dssp             EEEEES----CEEECCSSCSEEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC---TTCEEEEEEEEESSC-CEECCS-
T ss_pred             EEEEEC----cEEECCCceeEEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc---CCEEEEeeEEeCCCC-EEEECC-
Confidence            555555    3455432   4433 34 59  9999999986544567999884   899999999999888 557853 


Q ss_pred             CceEEEeccEEec-cCce-eeecCCCCCCCCcceEEEEeceeecCCC
Q 020121          153 STDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       153 s~~vTiS~n~f~~-h~k~-~liG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                       .+|+|++|.+.. |.-+ .-+|+...    .--+|++.++.+.++.
T Consensus       365 -~NI~I~n~~~~~~~g~~~IsiGs~~~----~V~NV~v~n~~i~~s~  406 (549)
T 1x0c_A          365 -SNVTARNIVMWKESVAPVVEFGWTPR----NTENVLFDNVDVIHQA  406 (549)
T ss_dssp             -SSEEEEEEEEEECSSSCSEECCBSCC----CEEEEEEEEEEEEECC
T ss_pred             -CCEEEEeeEEEcCCCCceEEECCCCC----cEEEEEEEeeEEECcc
Confidence             999999999973 5445 66787421    2237888888776643

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=97.26  E-value=0.0065  Score=61.19  Aligned_cols=141  Identities=17%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEc-------CCCceEEEeeeeeecCCC-Ce-------eeeec------CCce
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIK-------PNSRHIWIDRCSLRDYDD-GL-------IDITR------QSTD  155 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~-------~~~~nVwIDHcs~s~~~D-g~-------~di~~------~s~~  155 (331)
                      +.+. ++++.|+|.+|++...  .|.+.+.       -.+++.-|+||.|....+ +.       ++++.      .+++
T Consensus       121 iav~-G~~~~I~nn~I~~~~~--gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~  197 (506)
T 1dbg_A          121 VAIY-GSYNRITACVFDCFDE--ANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMY  197 (506)
T ss_dssp             EEEC-SSSCEEESCEEESCCS--SCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCC
T ss_pred             eEEe-cCCeEEEeeEEEcCCC--CceeeEeecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccCC
Confidence            4554 5889999999997432  1223331       124455688898876422 11       12222      1367


Q ss_pred             EEEeccEEeccC------ceeeecCCC-----CCCC-------Ccc--------eEEEEeceeecCCCCCCcccccC-eE
Q 020121          156 ITVSRCYFTQHD------KTMLIGADP-----SHVG-------DRC--------IRVTIHHCLFDGTRQRHPRLRFG-KV  208 (331)
Q Consensus       156 vTiS~n~f~~h~------k~~liG~~~-----~~~~-------d~~--------~~vT~hhN~f~~~~~R~Pr~r~G-~~  208 (331)
                      ..|.+|+|....      ...-+|...     ..++       ++.        -+.++.+|.|.++.. .=.++++ ..
T Consensus       198 ~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~i~~N~~~~~~g-gi~l~~~~~s  276 (506)
T 1dbg_A          198 HRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQG-TMNFRHGDHQ  276 (506)
T ss_dssp             CEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCEEESCEEESCSS-EEEEEECSSC
T ss_pred             eEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEEEECCEEEcccC-cEEEeecCcc
Confidence            888888887542      122233211     0000       000        024566666655432 2223444 35


Q ss_pred             EEEcceEeccc----cceeeeccCceEEEEceEEecCC
Q 020121          209 HLYNNYTRNWG----IYAVCASVESQIYSQCNIYEAGQ  242 (331)
Q Consensus       209 hv~NN~~~n~~----~~~~~~~~~a~v~~e~N~f~~~~  242 (331)
                      .|.+|++.+..    ..++... ++...+.+|||+.-.
T Consensus       277 ~I~~N~f~gN~~~~~~~Gi~i~-~~~~~I~nN~f~~~~  313 (506)
T 1dbg_A          277 VAINNFYIGNDQRFGYGGMFVW-GSRHVIACNYFELSE  313 (506)
T ss_dssp             EEESCEEEECSSSSCBCCEEEC-SBSCEEESCEEEESS
T ss_pred             EEECCEEECCcCccCceEEEEE-CCCCEEECCEEECCc
Confidence            78888877653    2344332 334477889988754

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=97.13  E-value=0.021  Score=55.20  Aligned_cols=114  Identities=17%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             chHHHHhhcCCC---eEEEEEeeeEEEeCceeEec-cceeeeeecc-ceEEecC-------------------cEEEeee
Q 020121           47 GSLREGCRRREP---LWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQ-RIKLTGK-------------------GLRLKEC  102 (331)
Q Consensus        47 GsLr~ai~~~~p---r~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~-g~~i~G~-------------------gi~i~~~  102 (331)
                      -++++||++..+   |.+++=..|+-+  +.|.|. +++||.|.|. ...|.+.                   .|.+. +
T Consensus        45 ~TIq~Ai~aa~~~~~~~~I~I~~G~Y~--E~v~I~k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv~V~-a  121 (364)
T 3uw0_A           45 SSINAALKSAPKDDTPFIIFLKNGVYT--ERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVN-A  121 (364)
T ss_dssp             CCHHHHHHHSCSSSSCEEEEECSEEEC--CCEEECSTTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSEEEC-S
T ss_pred             ccHHHHHhhcccCCCcEEEEEeCCEEE--EEEEEcCCeEEEEecCCCCeEEEccccccccccccccccccCeeEEEEE-C
Confidence            479999976332   222322345543  457775 5799999974 3455532                   25665 8


Q ss_pred             ccEEEeeeEEecCCC-----------------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          103 EHVIICNLEFEGGRG-----------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       103 ~NVIIrnL~i~~g~~-----------------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      ++++++||+|++...                 ...-||.+...++++.+.+|.|....|.+++-  .....-+.+|.|..
T Consensus       122 ~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~--~~gr~yf~~c~I~G  199 (364)
T 3uw0_A          122 PNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSK--TGSRSYFSDCEISG  199 (364)
T ss_dssp             TTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEEC--TTCEEEEESCEEEE
T ss_pred             CCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeC--CCCCEEEEcCEEEc
Confidence            999999999997631                 23456777435789999999999999998643  24567778888874

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=97.13  E-value=0.0089  Score=61.25  Aligned_cols=68  Identities=25%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCC----CCeeeeecCCceEEEeccEEeccCceeeec
Q 020121          102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYD----DGLIDITRQSTDITVSRCYFTQHDKTMLIG  173 (331)
Q Consensus       102 ~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~----Dg~~di~~~s~~vTiS~n~f~~h~k~~liG  173 (331)
                      ++||.|+|-+|+.   ..+|+|.|. .++||+|.+|.+....    ..-+.+..++.+|||++|.|.+...+..|=
T Consensus       182 S~NV~I~Nc~I~~---tGDDcIaIk-sseNI~I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt~~GIrIK  253 (609)
T 3gq8_A          182 SENIWIENCEATG---FGDDGITTH-HSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIK  253 (609)
T ss_dssp             CEEEEEESCEEES---CSSCSEEEC-SCEEEEEESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESSSEEEEEE
T ss_pred             ceeEEEEeeEEEe---cCCCEEEec-CCeeEEEEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECCCCEEEEE
Confidence            7899999999974   246999996 7999999999995431    223466556789999999999877766553

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=97.09  E-value=0.002  Score=65.46  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             eeeccEEEeeeEEecCCCCCCCceEEcCCC-ce--EEEeeeeee----cCCCCeeeeecCCceEEEeccEEeccCceeee
Q 020121          100 KECEHVIICNLEFEGGRGHDVDGIQIKPNS-RH--IWIDRCSLR----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLI  172 (331)
Q Consensus       100 ~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~-~n--VwIDHcs~s----~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~li  172 (331)
                      .+|+||.|++|+++....|   .+.+...+ ++  |.||++...    +..||+ |+.   ++|+|++|.|...+-+.-+
T Consensus       290 ~~c~nV~I~Giti~Nsp~w---~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGi-di~---~nV~I~n~~i~~gDDcIaI  362 (549)
T 1x0c_A          290 NSSQTFVLNGVTVSAPPFN---SMDWSGNSLDLITCRVDDYKQVGAFYGQTDGL-EMY---PGTILQDVFYHTDDDGLKM  362 (549)
T ss_dssp             SSCEEEEEESCEEECCSSC---SEEEECSCGGGEEEEEEEEEEECCCBTTCCCC-BCC---TTCEEEEEEEEESSCCEEC
T ss_pred             CCceEEEEECcEEECCCce---eEEeeccCCCCCeEEEEeeEeEcCCCCCCCcc-ccc---CCEEEEeeEEeCCCCEEEE
Confidence            6799999999999986543   35544245 68  999999974    357885 784   9999999999988777777


Q ss_pred             cCCCCCCCCcceEEEEeceeecCCCCCCcccccC-------eEEEEcceEecc
Q 020121          173 GADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFG-------KVHLYNNYTRNW  218 (331)
Q Consensus       173 G~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G-------~~hv~NN~~~n~  218 (331)
                      +++         +|++.++.+.... .++++..|       .+++.|..+.+.
T Consensus       363 ks~---------NI~I~n~~~~~~~-g~~~IsiGs~~~~V~NV~v~n~~i~~s  405 (549)
T 1x0c_A          363 YYS---------NVTARNIVMWKES-VAPVVEFGWTPRNTENVLFDNVDVIHQ  405 (549)
T ss_dssp             CSS---------SEEEEEEEEEECS-SSCSEECCBSCCCEEEEEEEEEEEEEC
T ss_pred             CCC---------CEEEEeeEEEcCC-CCceEEECCCCCcEEEEEEEeeEEECc
Confidence            762         5788887764211 22322222       467777777653

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.03  E-value=0.0021  Score=65.64  Aligned_cols=76  Identities=11%  Similarity=0.096  Sum_probs=60.5

Q ss_pred             eeccEEEeeeEEecCCCCCCCceEEcCCCceE--EEeeeeee----cCCCCeeeeecCCceEEEeccEEeccCceeeecC
Q 020121          101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHI--WIDRCSLR----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  174 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nV--wIDHcs~s----~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~  174 (331)
                      +|+||.|++|+++.+..|   .|.+. .|++|  .|++++..    +..||+ |+.   ++|+|++|.|...+-+.-|++
T Consensus       331 ~c~NV~I~Giti~NSp~w---~i~~~-~c~nV~~~I~nv~i~~~~~~nTDGI-Di~---~NV~I~nc~I~~gDDcIaIks  402 (574)
T 1ogo_X          331 GGQTWYCVGPTINAPPFN---TMDFN-GNSGISSQISDYKQVGAFFFQTDGP-EIY---PNSVVHDVFWHVNDDAIKIYY  402 (574)
T ss_dssp             SSEEEEEESCEEECCSSC---SEEEC-SSSCEEEEEEEEEEECCCSTTCCCC-BCC---TTCEEEEEEEEESSCSEECCS
T ss_pred             CceeEEEECeEEECCCCc---EEeec-CCCChhhEEEeeEeeCCCCCCCccC-ccc---CCEEEEeeEEECCCCEEEECC
Confidence            799999999999986443   57786 79999  99999864    248885 884   899999999998888877776


Q ss_pred             CCCCCCCcceEEEEeceee
Q 020121          175 DPSHVGDRCIRVTIHHCLF  193 (331)
Q Consensus       175 ~~~~~~d~~~~vT~hhN~f  193 (331)
                      .         +|++.+|.+
T Consensus       403 ~---------NI~I~nc~i  412 (574)
T 1ogo_X          403 S---------GASVSRATI  412 (574)
T ss_dssp             T---------TCEEEEEEE
T ss_pred             c---------cEEEEeEEE
Confidence            2         466666654

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.02  E-value=0.0049  Score=58.68  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=58.3

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec-------CCceEEEeccEEecc
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR-------QSTDITVSRCYFTQH  166 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~-------~s~~vTiS~n~f~~h  166 (331)
                      ..||.+..++||.|+|.+|+.    .+|+|.|. .++||+|.+|.+..+. | +.+..       ...+|+|++|.|.+.
T Consensus       153 tDGidi~~s~nV~I~n~~i~~----gDDciaik-sg~nI~i~n~~~~~gh-G-isiGS~g~~~~~~v~nV~v~n~~~~~t  225 (336)
T 1nhc_A          153 TDGFDISESTGVYISGATVKN----QDDCIAIN-SGESISFTGGTCSGGH-G-LSIGSVGGRDDNTVKNVTISDSTVSNS  225 (336)
T ss_dssp             CCSEEECSCEEEEEESCEEES----SSEEEEES-SEEEEEEESCEEESSS-E-EEEEEESSSSCCEEEEEEEEEEEEESC
T ss_pred             CCcEEecCCCeEEEEeCEEEc----CCCEEEEe-CCeEEEEEeEEEECCc-C-ceEccCccccCCCEEEEEEEeeEEECC
Confidence            456999889999999999985    46999997 6799999999998765 4 45522       257999999999987


Q ss_pred             Cceeeec
Q 020121          167 DKTMLIG  173 (331)
Q Consensus       167 ~k~~liG  173 (331)
                      ..+..|-
T Consensus       226 ~~girIk  232 (336)
T 1nhc_A          226 ANGVRIK  232 (336)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            6665553

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=96.87  E-value=0.014  Score=55.48  Aligned_cols=113  Identities=10%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeee------cCCceEEEeccEEecc-C
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT------RQSTDITVSRCYFTQH-D  167 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~------~~s~~vTiS~n~f~~h-~  167 (331)
                      .||.+..+++++|++=++...   ..|||.+..++++++|.+|.+....++.+-+.      ..+.+++|++|.+.+. .
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~---~~~GI~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~  249 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYAN---DRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAR  249 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESC---SSCSEEEETTCEEEEEESCEEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSS
T ss_pred             CceeEeccCCcEEECcEEEcc---ccCcEEEEeccCCeEEECCEEECccCceEEEeccccCCCCCccEEEECCEEEcCcc
Confidence            457777777777776544432   36999976348999999999998877765431      3578899999988753 3


Q ss_pred             ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEecc
Q 020121          168 KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW  218 (331)
Q Consensus       168 k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~  218 (331)
                      .+.++-.        .-++++.+|.+.++....=++.. -.+.+.||.+.+.
T Consensus       250 ~Gi~~~~--------~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~n  293 (377)
T 2pyg_A          250 EGVLLKM--------TSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDN  293 (377)
T ss_dssp             CSEEEEE--------EEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESC
T ss_pred             CceEecc--------ccCeEEECCEEECCCCceEEEecCCCcEEECcEEECC
Confidence            3333321        12677788877766433323321 2456777777653

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=96.73  E-value=0.012  Score=56.61  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=85.3

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCC---------CCCCc-eEEcCCCceEEEeeeeeecCCCCeeeeecCC---ceEEEec
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRG---------HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQS---TDITVSR  160 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~---------~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s---~~vTiS~  160 (331)
                      +.+|.+.+++||+|.|..|..+..         ...|+ +.+..++++|=|.+|-|......+|.-..++   .+||+-+
T Consensus       130 ~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g~~vT~hh  209 (353)
T 1air_A          130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCCCEEEEES
T ss_pred             CCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCCceEEEEc
Confidence            456888889999999999985421         01244 4664478999999999986544443221111   4799999


Q ss_pred             cEEeccC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccceeeec----cCceEEEE
Q 020121          161 CYFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVCAS----VESQIYSQ  234 (331)
Q Consensus       161 n~f~~h~-k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~~~----~~a~v~~e  234 (331)
                      |+|.++. +.=++...         .+-+.+|+|.+...+.-..+. +++-+.||||.+... .+..+    ........
T Consensus       210 N~f~~~~~R~Pr~r~G---------~~Hv~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~~g~~~~~  279 (353)
T 1air_A          210 NYYNDVNARLPLQRGG---------LVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAIN-PVTSRYDGKNFGTWVLK  279 (353)
T ss_dssp             CEEEEEEECSCEEESS---------EEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSSCCEEEEE
T ss_pred             eEEcCCcCCCCCCcCc---------eEEEEccEEECCCCceeccCCCcEEEEEceEEECCCC-ceEecCCCCCCceeEec
Confidence            9997542 11122211         456788999887665433443 578999999987532 22222    12344455


Q ss_pred             ceEEe
Q 020121          235 CNIYE  239 (331)
Q Consensus       235 ~N~f~  239 (331)
                      +|.|.
T Consensus       280 ~n~~~  284 (353)
T 1air_A          280 GNNIT  284 (353)
T ss_dssp             SCSCC
T ss_pred             ccccc
Confidence            66654

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=96.71  E-value=0.022  Score=55.68  Aligned_cols=137  Identities=16%  Similarity=0.196  Sum_probs=84.0

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCCCC-------------CCc-eEEcCCCceEEEeeeeeecCCCCeeeeecCC------
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRGHD-------------VDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQS------  153 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~~~-------------~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s------  153 (331)
                      +.+|.+.+++||+|.|..|..+...+             .|+ |.+..++++|=|-+|-|.+....+|--..++      
T Consensus       183 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  262 (399)
T 2o04_A          183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTT
T ss_pred             CCeEEecCCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccC
Confidence            46789989999999999999653111             243 4665578999999999987554444322111      


Q ss_pred             -ceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCC--c-----ccc-cCeEEEEcceEeccccc--
Q 020121          154 -TDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--P-----RLR-FGKVHLYNNYTRNWGIY--  221 (331)
Q Consensus       154 -~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--P-----r~r-~G~~hv~NN~~~n~~~~--  221 (331)
                       -.||+-+|+|.++.. .=.+..         -.+-+.+|+|.+.....  |     ..+ .+++.+.||||.+....  
T Consensus       263 ~~~vT~h~N~f~~~~~R~Pr~R~---------G~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~  333 (399)
T 2o04_A          263 KLKITLHHNRYKNIVQAAPRVRF---------GQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAA  333 (399)
T ss_dssp             CCCEEEESCEEEEEEECTTEESS---------CEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSG
T ss_pred             ceeEEEECcEecCCcccCCCccc---------ceEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEECCCCCcc
Confidence             289999999975321 111211         14667899997654311  0     111 24789999999985211  


Q ss_pred             -eeeec-cCceEEEEceEEe
Q 020121          222 -AVCAS-VESQIYSQCNIYE  239 (331)
Q Consensus       222 -~~~~~-~~a~v~~e~N~f~  239 (331)
                       .+..- .+..+...+|+|.
T Consensus       334 ~~~~~~s~~~~~~~~gn~~~  353 (399)
T 2o04_A          334 KTISVFSGGTALYDSGTLLN  353 (399)
T ss_dssp             GGEEECTTCCBCEEESCEET
T ss_pred             ceeeeccCCceEEEeCceec
Confidence             11111 2344456778875

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=96.67  E-value=0.078  Score=50.92  Aligned_cols=148  Identities=20%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             CCceEEcCCCceEEEeeeeeecCCC---------------CeeeeecCCceEEEeccEEecc-----CceeeecCC----
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRDYDD---------------GLIDITRQSTDITVSRCYFTQH-----DKTMLIGAD----  175 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~~~D---------------g~~di~~~s~~vTiS~n~f~~h-----~k~~liG~~----  175 (331)
                      +.+|.|. +++||+|.+..|....|               ..|.+ .++++|-|-+|.|+..     ....++|..    
T Consensus        95 g~gl~i~-~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i-~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~  172 (355)
T 1pcl_A           95 NGSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQH  172 (355)
T ss_pred             cCEEEEe-cCCeEEEeeeEEEcCcccccccccccCccccCceEEe-cCCCcEEEEeeEEeccccCccccccccCcccccc
Confidence            3467886 78999999999984321               13466 4577777777777632     222344432    


Q ss_pred             CCC--CCCcceEEEEeceeecCCCCCCcccc---------cC--eEEEEcceEeccccceeeeccCceEEEEceEEecCC
Q 020121          176 PSH--VGDRCIRVTIHHCLFDGTRQRHPRLR---------FG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  242 (331)
Q Consensus       176 ~~~--~~d~~~~vT~hhN~f~~~~~R~Pr~r---------~G--~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~  242 (331)
                      |..  .......||+.+|+|.++..= =++.         .|  ++.+.+|+|.+...+.-..+. ..+-+-+|||.+..
T Consensus       173 Dgl~Di~~~s~~VTiS~n~f~~h~k~-~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~-G~~Hv~NN~~~~~~  250 (355)
T 1pcl_A          173 DGALDIKKGSDYVTISYSRFELHDKT-ILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF-GSIHAYNNVYLGDV  250 (355)
T ss_pred             ccceeeecCCCcEEEEeeEEcCCCce-EEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec-ceEEEEcceEEccc
Confidence            111  111224799999999875431 1111         02  588999999887655433332 34677899997653


Q ss_pred             cceeeeeeeccccCccccCccEEEEcCCeEEcC
Q 020121          243 KKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKG  275 (331)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng  275 (331)
                      .-.+..+...    ......+.+..++|.|.++
T Consensus       251 ~~~~~~~~ya----~g~~~~~~i~~e~N~F~~~  279 (355)
T 1pcl_A          251 KHSVYPYLYS----FGLGTSGSILSESNSFTLS  279 (355)
T ss_pred             CCCccccceE----ecCCCCcEEEEEccEEECC
Confidence            2211111110    0112345688899999987

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=96.63  E-value=0.013  Score=55.79  Aligned_cols=136  Identities=15%  Similarity=0.154  Sum_probs=85.6

Q ss_pred             cCcEEEe-----eeccEEEeeeEEecCC-C------CCCC-ceEEcCCCceEEEeeeeeecCCCCeeeeecC------Cc
Q 020121           94 GKGLRLK-----ECEHVIICNLEFEGGR-G------HDVD-GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ------ST  154 (331)
Q Consensus        94 G~gi~i~-----~~~NVIIrnL~i~~g~-~------~~~D-~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~------s~  154 (331)
                      +.+|.+.     .++||+|.|..|..+. .      .-.| .|.+..++++|=|-+|-|.+....+|--..+      ..
T Consensus       113 ~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~  192 (330)
T 2qy1_A          113 ADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAA  192 (330)
T ss_dssp             CCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGC
T ss_pred             CcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCc
Confidence            4568887     5999999999997432 0      1124 4566557899999999998654444322111      15


Q ss_pred             eEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccceeeec---cCc
Q 020121          155 DITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVCAS---VES  229 (331)
Q Consensus       155 ~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~~~---~~a  229 (331)
                      .||+-+|+|.+... .=++...         .+-+.+|+|.+.....-..+. +++.+.||||.+... .+...   ...
T Consensus       193 ~vT~h~N~f~~~~~R~Pr~r~G---------~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~g  262 (330)
T 2qy1_A          193 RTTYHHNRFENVESRVPLQRFG---------LSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKN-PVTSRDSSEIG  262 (330)
T ss_dssp             EEEEESCEEEEEEECTTEEESS---------EEEEESCEEEEECSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSBC
T ss_pred             eEEEECcEEcCCCCCCCceecc---------eEEEEeeEEEcccceEeccCCCcEEEEEccEEECCCC-ceeeccCCCce
Confidence            89999999975321 1112111         456788999887665544443 578999999987532 22211   223


Q ss_pred             eEEEEceEEec
Q 020121          230 QIYSQCNIYEA  240 (331)
Q Consensus       230 ~v~~e~N~f~~  240 (331)
                      ....++| |.+
T Consensus       263 ~~~~~~n-~~~  272 (330)
T 2qy1_A          263 YWDLINN-YVG  272 (330)
T ss_dssp             EEEEESC-EEC
T ss_pred             eEEEeCC-ccc
Confidence            4566788 554

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=96.54  E-value=0.032  Score=54.78  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCCC-------------CCCc-eEEcCCCceEEEeeeeeecCCCCeeeeecCC------
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRGH-------------DVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQS------  153 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~~-------------~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s------  153 (331)
                      +.+|.|.+++||+|.|..|..+...             ..|+ |.+..++++|=|-+|-|.+....+|--..++      
T Consensus       189 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  268 (416)
T 1vbl_A          189 YDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSG  268 (416)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEESSCEEEEEESCEEEEEEECCEECSCTTCGGGTT
T ss_pred             CceEEecCCceEEEEccEEecCCCcccccccccCcceeecccceeeecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCC
Confidence            4678998999999999999965311             0243 4565578999999999987554444322111      


Q ss_pred             -ceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCC-c-cc----c-cCeEEEEcceEecccc--ce
Q 020121          154 -TDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH-P-RL----R-FGKVHLYNNYTRNWGI--YA  222 (331)
Q Consensus       154 -~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~-P-r~----r-~G~~hv~NN~~~n~~~--~~  222 (331)
                       -.||+-+|+|.++.. .=.+-.         -.+-+.+|+|.+..... + ..    + .+++.+.||||.+...  ..
T Consensus       269 ~~~VT~hhN~f~~~~~R~Pr~R~---------G~~Hv~NN~~~n~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~  339 (416)
T 1vbl_A          269 HLRVTLHHNYYKNVTQRLPRVRF---------GQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPS  339 (416)
T ss_dssp             CCCEEEESCEEEEEEECSSEESS---------CEEEEESCEEEECTTSSSCCCCSEEEETTCEEEEESCEEEESSCCCGG
T ss_pred             ceEEEEECcEecCCccCCccccc---------ceEEEEcceEECCCCCcccceeEeccCCCcEEEEECCEEECCCCCCcc
Confidence             269999999975321 111211         14567889997654310 0 01    1 2578899999986421  11


Q ss_pred             -ee-e--ccCceEEEEceEEec
Q 020121          223 -VC-A--SVESQIYSQCNIYEA  240 (331)
Q Consensus       223 -~~-~--~~~a~v~~e~N~f~~  240 (331)
                       +. .  ..++.+...+|+|..
T Consensus       340 ~~~~~~~~~~~~~~~~gn~~~~  361 (416)
T 1vbl_A          340 LIIKVWSKNEESMYETGTIVDL  361 (416)
T ss_dssp             GSEEEECSSCCEEEEESCEEEE
T ss_pred             ceeeeeccCCceEEecCCEEee
Confidence             11 1  145566778999963

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=96.19  E-value=0.027  Score=54.97  Aligned_cols=57  Identities=9%  Similarity=0.139  Sum_probs=29.2

Q ss_pred             cceeeeee-----ccceEEecCcEEEee-eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeee
Q 020121           79 SYKTIDGR-----GQRIKLTGKGLRLKE-CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR  140 (331)
Q Consensus        79 sn~TI~G~-----g~g~~i~G~gi~i~~-~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s  140 (331)
                      ++++|.|.     |...+-...||.+.. ++++.|++++|...    .=||.++ +++++.|.+|.+.
T Consensus       141 ~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~----~fGI~l~-~a~~~~I~~N~I~  203 (410)
T 2inu_A          141 RDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYL----EHALIVR-GADALRVNDNMIA  203 (410)
T ss_dssp             ESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESC----SEEEEET-TEESCEEESCEEE
T ss_pred             CCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecc----cEEEEEc-cCCCcEEECCEEE
Confidence            36777776     543333334566643 56667777777642    2334443 3444444444444

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=95.91  E-value=0.15  Score=49.61  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=33.6

Q ss_pred             EEEEeceeecCCCCCCccccc--CeEEEEcceEeccccceeeeccCc----eEEEEceEEecCC
Q 020121          185 RVTIHHCLFDGTRQRHPRLRF--GKVHLYNNYTRNWGIYAVCASVES----QIYSQCNIYEAGQ  242 (331)
Q Consensus       185 ~vT~hhN~f~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~~~~~~~~a----~v~~e~N~f~~~~  242 (331)
                      +.++.+|+..++...-=....  +.+.+.||..++.. +++......    ...+++|.+....
T Consensus       257 ~~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~N~-~~~~~~~~~~~~~~~~~~nNi~~~~~  319 (400)
T 1ru4_A          257 NHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNG-INYGFGSNVQSGQKHYFRNNVSLSAS  319 (400)
T ss_dssp             CCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSS-EEEEECSCCCTTCCEEEESCEEESSC
T ss_pred             CEEEEeeEEECCcCcCEeecCCCCCEEEECeEEECCc-cceEEecCCCcccceEEEccEEEccc
Confidence            456777776555433111122  45789999877765 555544332    5567888887653

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=95.77  E-value=0.061  Score=53.52  Aligned_cols=91  Identities=11%  Similarity=0.016  Sum_probs=63.2

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCc-eEEcCCCceEEEeeeeeecCCCCeeeeec-----------CCceEEEeccE
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITR-----------QSTDITVSRCY  162 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~-----------~s~~vTiS~n~  162 (331)
                      .|+.+ .++||.|+|++|..+  .+.+| +... .++||.|++|.|.. ..+ +.++.           ...+|++++|.
T Consensus       168 DGi~i-~s~nV~I~n~~I~~g--ddgiGs~~~~-~~~NV~V~n~~~~g-g~G-IrIktg~d~IG~~~~g~v~NI~~~Ni~  241 (464)
T 1h80_A          168 NGRLH-WSRNGIIERIKQNNA--LFGYGLIQTY-GADNILFRNLHSEG-GIA-LRMETDNLLMKNYKQGGIRNIFADNIR  241 (464)
T ss_dssp             TTEEE-EEEEEEEEEEEEESC--CTTCEEEEES-EEEEEEEEEEEEES-SEE-EEEECCCHHHHHHTCCEEEEEEEEEEE
T ss_pred             CCcee-eccCEEEeceEEecC--CCeEEecccC-CEeEEEEEeeEEEC-CCE-EEEEeCCceeccCCCCcEEEEEEEeEE
Confidence            34556 589999999999986  23456 4443 78999999999887 333 34432           25799999999


Q ss_pred             EeccCceeeecCCCCCCCCcceEEEEeceeecC
Q 020121          163 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDG  195 (331)
Q Consensus       163 f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~  195 (331)
                      |.+-..+..|+......    -+|+|.+-...+
T Consensus       242 ~~nv~~~I~I~p~~~~i----snItfeNI~~t~  270 (464)
T 1h80_A          242 CSKGLAAVMFGPHFMKN----GDVQVTNVSSVS  270 (464)
T ss_dssp             EESSSEEEEEECTTCBC----CCEEEEEEEEES
T ss_pred             EECCceeEEEeCCCceE----eEEEEEEEEEEc
Confidence            99988888887432111    257776655555

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=95.52  E-value=0.24  Score=47.67  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             cCcEEEee-eccEEEeeeEEecCCCC-------------CCC-ceEEcCCCceEEEeeeeeecCCCCeeeeecCC-----
Q 020121           94 GKGLRLKE-CEHVIICNLEFEGGRGH-------------DVD-GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS-----  153 (331)
Q Consensus        94 G~gi~i~~-~~NVIIrnL~i~~g~~~-------------~~D-~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s-----  153 (331)
                      +.+|.|.+ ++||+|.|..|..+...             ..| .|.+..++++|=|-+|-|......+|--..++     
T Consensus       143 ~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d  222 (361)
T 1pe9_A          143 WDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQD  222 (361)
T ss_dssp             CCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHH
T ss_pred             CceEEeecCCceEEEEccEeecccccccccccccCcceeeccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccc
Confidence            56799998 99999999999965211             124 35665578999999999987554544322111     


Q ss_pred             ---ceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCC--c-----ccc-cCeEEEEcceEecc
Q 020121          154 ---TDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--P-----RLR-FGKVHLYNNYTRNW  218 (331)
Q Consensus       154 ---~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--P-----r~r-~G~~hv~NN~~~n~  218 (331)
                         -.||+-+|+|.++.. .=.+..         -.+-+.+|+|.+.....  |     ..+ .+++.+.||||.+.
T Consensus       223 ~g~~~vT~hhN~f~~~~~R~Pr~R~---------G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~  290 (361)
T 1pe9_A          223 KGKLHVTLFNNVFNRVTERAPRVRY---------GSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             TTCCEEEEESCEEEEEEECSSEESS---------CEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEE
T ss_pred             cCcceEEEECeEEcCccccCccccc---------ceEEEEcceEecccCCCccccceEecCCCCcEEEEECCEEECC
Confidence               269999999975321 111111         13567889996432210  1     111 25789999999875

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=95.32  E-value=0.15  Score=52.10  Aligned_cols=79  Identities=11%  Similarity=0.092  Sum_probs=37.3

Q ss_pred             EEEeeeeeecCCCCeeee-ecCCc-eEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEE
Q 020121          132 IWIDRCSLRDYDDGLIDI-TRQST-DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVH  209 (331)
Q Consensus       132 VwIDHcs~s~~~Dg~~di-~~~s~-~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~h  209 (331)
                      |+|.+|.|..+ |.++.+ +.++. +++++  .+....-+.-||+..   ...--+|++.+ .+..+..|.+.++  .++
T Consensus       233 V~I~nc~I~tG-DDCIAI~KSGs~~ni~~e--~~~~GHgGISIGSe~---~ggV~NV~V~N-rIKt~~G~GG~V~--NIt  303 (600)
T 2x6w_A          233 TVYVNCPYSGV-ESCYFSMSSSFARNIACS--VQLHQHDTFYRGSTV---NGYCRGAYVVM-HAAEAAGAGSYAY--NMQ  303 (600)
T ss_dssp             EEEECSSSEEE-ESCEEECCCTTHHHHEEE--EEECSSSEEEESCEE---EEESEEEEEEE-CGGGCTTTCSEEE--EEE
T ss_pred             EEEEeeEEecC-CcEEEEecCCCcCCeEEE--EEcCCCCcEEecccc---cCcEEEEEEEE-EEEeecCCCceEE--EEE
Confidence            55566665544 333455 54432 24444  121111244455421   11123677776 6666555443333  456


Q ss_pred             EEcceEeccc
Q 020121          210 LYNNYTRNWG  219 (331)
Q Consensus       210 v~NN~~~n~~  219 (331)
                      +.|....+..
T Consensus       304 feNI~m~nV~  313 (600)
T 2x6w_A          304 VENNIAVIYG  313 (600)
T ss_dssp             EESCEEEESS
T ss_pred             EEEEEEEccc
Confidence            6666666654

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=95.18  E-value=0.22  Score=48.89  Aligned_cols=113  Identities=13%  Similarity=0.227  Sum_probs=74.6

Q ss_pred             hHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec---cceeeeeecc---ceEEe-------------------c---
Q 020121           48 SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ---RIKLT-------------------G---   94 (331)
Q Consensus        48 sLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~---g~~i~-------------------G---   94 (331)
                      ++++||++.     ..|.+|+=..|+-+  +.|.|.   +++||+|.|.   .++|.                   |   
T Consensus        91 TIqeAVdaap~~~~~~r~vI~Ik~GvY~--E~V~Ip~~K~~ItL~G~G~~~t~Iti~~~~~~~~~~~d~~~~~n~~G~~~  168 (422)
T 3grh_A           91 TIQAAVDAAIIKRTNKRQYIAVMPGEYQ--GTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYM  168 (422)
T ss_dssp             SHHHHHHHHHTTCCSSCEEEEECSEEEE--SCEEECCCSSCEEEEECSSSGGGEEEEECCCTTSCHHHHHHHHCGGGSSC
T ss_pred             CHHHHHHhchhcCCCccEEEEEeCCeEe--eeEEecCCCCcEEEEeccCCCceEEEeecccccccccccccccccccccc
Confidence            899999752     23554543466655  457774   7999999875   24442                   0   


Q ss_pred             -----------------C--------cEEEeeeccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecC
Q 020121           95 -----------------K--------GLRLKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDY  142 (331)
Q Consensus        95 -----------------~--------gi~i~~~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~  142 (331)
                                       .        .|.+. +++++++||+|+...+       ...-|+.+.  +.++.+.+|.|.-.
T Consensus       169 ~G~~aw~tf~~~~~~~sat~gT~~SAT~~V~-g~~F~a~niTf~Ntag~~~~~~~~QAVAL~v~--gDr~~fy~C~f~G~  245 (422)
T 3grh_A          169 PGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQ-NNGLQLQNLTIENTLGDSVDAGNHPAVALRTD--GDQVQINNVNILGR  245 (422)
T ss_dssp             TTSTTHHHHHHHHTCCSSSCCGGGCCSEEEC-CTTCEEEEEEEEETTGGGSCSSCCCCCSEEEC--CSSEEEEEEEEECS
T ss_pred             cCccccccccccccccccceeccceEEEEEE-CCCEEEEeeEEEeCCCCCCCCCCCceEEEEec--CCcEEEEeeEEEee
Confidence                             0        13343 7899999999997532       234566664  67899999999998


Q ss_pred             CCCeeeee---------cCCceEEEeccEEec
Q 020121          143 DDGLIDIT---------RQSTDITVSRCYFTQ  165 (331)
Q Consensus       143 ~Dg~~di~---------~~s~~vTiS~n~f~~  165 (331)
                      .|-|+--.         .....--..+|.|..
T Consensus       246 QDTLy~~~~~~~~~~~~d~~gRqyy~~CyIeG  277 (422)
T 3grh_A          246 QNTFFVTNSGVQNRLETNRQPRTLVTNSYIEG  277 (422)
T ss_dssp             TTCEEECCCCTTCSCCSSCCCEEEEESCEEEE
T ss_pred             cceeeeccccccccccccccccEEEEecEEec
Confidence            89886321         123456667777764

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=93.39  E-value=0.63  Score=48.73  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=28.4

Q ss_pred             hHHHHhhcC------------CCeEEEEEeeeEEEeCceeEeccceeeeeecc
Q 020121           48 SLREGCRRR------------EPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQ   88 (331)
Q Consensus        48 sLr~ai~~~------------~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~   88 (331)
                      .|++|+++.            .|.+|+|- .|+-.++++|.+.+++.|.|.+.
T Consensus        68 Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P-~GtYlvs~tI~l~~~t~L~G~~~  119 (758)
T 3eqn_A           68 AIQAAINAGGRCGQGCDSTTTQPALVYFP-PGTYKVSSPLVVLYQTQLIGDAK  119 (758)
T ss_dssp             HHHHHHHTTSCSCTTCCCCSSSCEEEEEC-SSEEEESSCEECCTTEEEEECSS
T ss_pred             HHHHHHHHhhhcccccccccccceEEEEC-CceEEEcccEEccCCeEEEecCC
Confidence            589998753            24566653 67777777788888888888754

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=92.39  E-value=2  Score=42.42  Aligned_cols=162  Identities=14%  Similarity=0.118  Sum_probs=87.4

Q ss_pred             hHHHHhhc---C-CCeEEEEEeee----EEEeCceeEeccceeeeeeccceEEe----cCc-EEEee----eccEEEeee
Q 020121           48 SLREGCRR---R-EPLWIVFEVSG----TIHLSSYLSVSSYKTIDGRGQRIKLT----GKG-LRLKE----CEHVIICNL  110 (331)
Q Consensus        48 sLr~ai~~---~-~pr~Ivf~v~G----~I~l~~~l~v~sn~TI~G~g~g~~i~----G~g-i~i~~----~~NVIIrnL  110 (331)
                      .|++|+++   . ++.+|+|- .|    +-.+.+.|.+.++++|.|.+....+.    ..| +....    -...-++||
T Consensus        70 AIQkAIdaA~a~~GGGtVyVP-aG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~I~GtIia~~y~s~I~~~~VeNI  148 (514)
T 2vbk_A           70 AIQNAIDAVASLPSGGELFIP-ASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNI  148 (514)
T ss_dssp             HHHHHHHHHHTSTTCEEEECC-CCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTTCCSEEEEECCCSCCSCEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEEC-CCCcceeEEECCeEEecCCeEEEEecCceEeeccccccccEEeccCCccccccCceEE
Confidence            48888863   2 56666653 46    66677788888999999985432211    111 21100    012336788


Q ss_pred             EEecCCCCCCCceEEcC-------------CCceEEEeeeeee------cC----------CCCeeeeecCCceEEEecc
Q 020121          111 EFEGGRGHDVDGIQIKP-------------NSRHIWIDRCSLR------DY----------DDGLIDITRQSTDITVSRC  161 (331)
Q Consensus       111 ~i~~g~~~~~D~I~i~~-------------~~~nVwIDHcs~s------~~----------~Dg~~di~~~s~~vTiS~n  161 (331)
                      +|.+...-  ||+...-             ..++|-|.+|+..      |.          .+-.|++...+.+|.|++|
T Consensus       149 aITG~GTI--DG~g~n~t~e~~~~Rq~~~~~fdnV~Vn~Vt~~v~~Sg~WTIhPi~Cqnvt~r~gL~f~eSCrNV~IsnC  226 (514)
T 2vbk_A          149 RVTGNNTC--NGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSC  226 (514)
T ss_dssp             EEECCSSS--EEEEESCCTTCSSCCCEESEEEESCEEEEEEEEEEEESEEEEEEESCEEEEEEEEEEEESCCEEEEEESC
T ss_pred             EEECCCeE--eCCCCCccccceeeeccceEEeeeEEEEeEEEeEeccCcEEEeEeccCceecccCccccCCCCeEEEecc
Confidence            88865321  2221110             1234555555331      21          1123466566889999999


Q ss_pred             EEeccCc-------------------------eeeecCCCCCCCCcceE-EEEeceeecCCCCCCcccccCeEEEEcce
Q 020121          162 YFTQHDK-------------------------TMLIGADPSHVGDRCIR-VTIHHCLFDGTRQRHPRLRFGKVHLYNNY  214 (331)
Q Consensus       162 ~f~~h~k-------------------------~~liG~~~~~~~d~~~~-vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~  214 (331)
                      +|+-.+.                         +..+|+....  -+-.+ |+.|.|+|.|+.+-.-.+...+..+.-|+
T Consensus       227 ~FsVGDdciaiksGk~~~~~~~~~~se~~~hgav~igSE~m~--~Gvk~~v~v~~Clf~~td~~~~~~~~~~~~~~~~~  303 (514)
T 2vbk_A          227 HFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMC--IGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENV  303 (514)
T ss_dssp             EEECTTSCCTTCEEEEEECBCCTTTSSCBCCEEEEEESSEEE--ESCSEEEEESCCEEEEEESEEEEEESSEEEEESCC
T ss_pred             EEecCcceeeeecCceecccccCCcchhcccccEEECchhhc--ccccccEEEEeeeccCCccccccccCCcceEEEec
Confidence            9973211                         2333433110  01135 89999999999887555543344444454

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=86.96  E-value=0.89  Score=46.42  Aligned_cols=62  Identities=13%  Similarity=0.368  Sum_probs=46.2

Q ss_pred             EEeeeccEEEeeeEEecC-CCCCCCceEE---cCCCceEEEeeee----eec--CCCCeeeeecCCceEEEeccEEeccC
Q 020121           98 RLKECEHVIICNLEFEGG-RGHDVDGIQI---KPNSRHIWIDRCS----LRD--YDDGLIDITRQSTDITVSRCYFTQHD  167 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g-~~~~~D~I~i---~~~~~nVwIDHcs----~s~--~~Dg~~di~~~s~~vTiS~n~f~~h~  167 (331)
                      ++.+++   |++|+|+.+ ..   -.|.+   . .|+||.|++|+    +..  ..||+         |+|++|.|..-+
T Consensus       181 ~f~~c~---I~GITi~NSDP~---w~I~iG~~~-~c~NVtI~nvtfi~aI~sspNTDGI---------V~I~nc~I~tGD  244 (600)
T 2x6w_A          181 RSYNCS---VTGITFQNGDVT---WAITLGWNG-YGSNCYVRKCRFINLVNSSVNADHS---------TVYVNCPYSGVE  244 (600)
T ss_dssp             SEEEEE---EESCEEESCCCS---CSEEECBTT-BEEEEEEESCEEECCCCCSSCCCEE---------EEEECSSSEEEE
T ss_pred             EEeeeE---EeCeEEECCCCc---cEEEeCCCC-CcccEEEeCeEEcceEecCCCCCEE---------EEEEeeEEecCC
Confidence            344454   999999986 43   34677   6 78999999999    543  45665         999999999877


Q ss_pred             ceeee-cCC
Q 020121          168 KTMLI-GAD  175 (331)
Q Consensus       168 k~~li-G~~  175 (331)
                      -+.-| .+.
T Consensus       245 DCIAI~KSG  253 (600)
T 2x6w_A          245 SCYFSMSSS  253 (600)
T ss_dssp             SCEEECCCT
T ss_pred             cEEEEecCC
Confidence            77777 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1pxza_	346	b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark	9e-93
d1qcxa_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	2e-61
d1pe9a_	361	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	3e-60
d1idka_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	2e-57
d1bn8a_	399	b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta	1e-53
d1o88a_	353	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	2e-48

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  278 bits (711), Expect = 9e-93
 Identities = 105/341 (30%), Positives = 154/341 (45%), Gaps = 40/341 (11%)

Query: 9   VDSCLR----------ALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +DSC R           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G  
Sbjct: 4   IDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGAT 63

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVIICNLEF 112
           R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++  HVI+ +L  
Sbjct: 64  REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHI 123

Query: 113 EGGRGHDVDGIQIKP------------------NSRHIWIDRCSLRDYDDGLIDITRQST 154
            G     +  + +                    N  + WID  SL D  DGLID+T  ST
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGST 183

Query: 155 DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNN 213
            IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR R+G VH+ NN
Sbjct: 184 GITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANN 243

Query: 214 YTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA-KSGLIRSEGDIF 272
               W IYA+  S    I S+ N + A  +    E       +   A  + + RS  D F
Sbjct: 244 NYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAF 303

Query: 273 LKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQ 313
           + GA         E  +++ +E +         ++  Q+ +
Sbjct: 304 INGAYFVSSGKTEETNIYNSNEAFKV----ENGNAAPQLTK 340

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

 Score =  198 bits (503), Expect = 2e-61
 Identities = 52/287 (18%), Positives = 91/287 (31%), Gaps = 53/287 (18%)

Query: 15  ALAGQAEGFGRFAIGGLHGPVYFVTN-------LSDDGP--------------------- 46
            + G AEGF     GG      + T        L D+ P                     
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTT 61

Query: 47  --------------GSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKL 92
                          +L   C   +       V+        ++V+S K+I G+G +  +
Sbjct: 62  GCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVI 121

Query: 93  TGKGLRL-KECEHVIICNLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYDDGLI 147
            GKGLR+    ++VII N+         V   D I +  +S  +WID  +  R     ++
Sbjct: 122 KGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGRQHIV 180

Query: 148 DITRQSTDITVSRCYFTQHDKTMLIGADPSHVG----DRCIRVTIHHCLFDGTRQRHPRL 203
             T     +T+S                  + G         VT+    F     R P++
Sbjct: 181 LGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV 240

Query: 204 RFGK-VHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY 249
           +    +H  NN   N+  +A        + ++ N+++          
Sbjct: 241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPI 287

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

 Score =  194 bits (495), Expect = 3e-60
 Identities = 74/350 (21%), Positives = 128/350 (36%), Gaps = 70/350 (20%)

Query: 18  GQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS----- 72
               GF           +Y VTN+S+                 I+  + GTI +S     
Sbjct: 18  ASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKIIQ-IKGTIDISGGTPY 71

Query: 73  ---------SYLSVSSYKTIDGRGQRIKLTGKGLRL---KECEHVIICNLEFEGGR---- 116
                    S +++ +  T+ G G   K     L +       +VII N+  +       
Sbjct: 72  TDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEP 131

Query: 117 --------GHDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITR 151
                     + D + I   + H+WID  ++ D +                 DG +DI R
Sbjct: 132 HYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR 191

Query: 152 QSTDITVSRCYFTQHDKTMLIGA-DPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVH 209
            S  +T+S     QHDKTMLIG  D +   D+  + VT+ + +F+   +R PR+R+G +H
Sbjct: 192 GSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIH 251

Query: 210 LYNNYTRNWG-------IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKS 262
            +NN  +           Y+        + S+ N +              KA   ++  +
Sbjct: 252 SFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA------NLSASKACKVVKKFN 305

Query: 263 GLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQIL 312
           G I S+    L G+   L    G     + S+    + ++  +  L Q +
Sbjct: 306 GSIFSDNGSVLNGSAVDL---SGCGFSAYTSKIPYIYDVQPMTTELAQSI 352

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

 Score =  188 bits (477), Expect = 2e-57
 Identities = 45/281 (16%), Positives = 86/281 (30%), Gaps = 63/281 (22%)

Query: 16  LAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFE----------- 64
           ++G AEGF +   GG      +   + +     L       E   IV             
Sbjct: 3   VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVLTKTFDFTDSEGT 57

Query: 65  ------------------------------------VSGTIHLSSYLSVSSYKTIDGRGQ 88
                                               V      +  ++V+S K++ G G 
Sbjct: 58  TTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGS 117

Query: 89  RIKLTGKGLRL-KECEHVIICNLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSLRD-YD 143
              + GKGLR+    E++II N+         V   D I +  +   +WID  +      
Sbjct: 118 SGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGR 176

Query: 144 DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQR 199
              +  T     ++++  Y               +    +      VT+       T  R
Sbjct: 177 QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGR 236

Query: 200 HPRLRF-GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE 239
            P+++    +H  NNY  +   +A        + ++ N+++
Sbjct: 237 SPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQ 277

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

 Score =  178 bits (453), Expect = 1e-53
 Identities = 68/284 (23%), Positives = 106/284 (37%), Gaps = 57/284 (20%)

Query: 72  SSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR--------------- 116
              + + +  TI G G   K+ G   ++K  ++VII N+EF+                  
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178

Query: 117 -GHDVDGIQIKPNSRHIWIDRCSLR-----------------DYDDGLIDITRQSTDITV 158
                D I I     HIWID C+                    + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237

Query: 159 SRCYFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 217
           S  Y+  HDK+ + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297

Query: 218 WG-------IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGD 270
                     YA      S+IY+Q N+ +              A        G    +  
Sbjct: 298 STSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLS--------AAKTISVFSGGTALYDSG 349

Query: 271 IFLKGAQAQLL--TGVGEECVFHPSEYYPTWTMEAPSDSLKQIL 312
             L G Q       G+     + PS +         S ++K  +
Sbjct: 350 TLLNGTQINASAANGLSSSVGWTPSLHGSID----ASANVKSNV 389

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

 Score =  164 bits (415), Expect = 2e-48
 Identities = 54/247 (21%), Positives = 80/247 (32%), Gaps = 27/247 (10%)

Query: 17  AGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLS 76
           A + +  G+   GG +  V   T   D    +            I  + S          
Sbjct: 35  AARLDANGKKVKGGAYPLVITYTGNEDSLINAAAAN--------ICGQWSKDPR--GVEI 84

Query: 77  VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPN-SRHIWID 135
               K I   G        G+ +K+   V++ N+      G   DG  I+ + S ++W+D
Sbjct: 85  KEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVD 144

Query: 136 RCSL-------------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR 182
              L                 +  +DI   S  +TVS  Y     K  L G   S   D 
Sbjct: 145 HNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDG---SSSSDT 201

Query: 183 CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ 242
              +T HH  ++    R P  R G VH YNN   N     +      Q   + N +E   
Sbjct: 202 GRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAI 261

Query: 243 KKRTFEY 249
              T  Y
Sbjct: 262 NPVTSRY 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	100.0
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	100.0
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	100.0
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	100.0
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	100.0
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	98.63
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	98.5
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.43
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.19
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.18
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	98.12
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	98.09
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.98
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.95
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.81
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.65
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	97.36
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.34
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.29
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	97.15
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.04
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	96.91
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	96.83
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	96.66
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	96.64
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	96.6
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	96.59
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	96.24
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	96.24
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	96.16
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	95.98
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	95.7
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	95.38
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	91.18

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=6.5e-72  Score=539.48  Aligned_cols=305  Identities=35%  Similarity=0.527  Sum_probs=256.9

Q ss_pred             cccccccCCCcccccCCCCCCCCCceEEecCCCCC----CCchHHHHhhcCCCeEEEEEeeeEEEeCceeEeccceeeee
Q 020121           10 DSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDG   85 (331)
Q Consensus        10 ~~~~~~~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~----g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G   85 (331)
                      +.++|+|++||||||++||||+||+||+||||+|+    ||||||+|+++++||||||+|+|+|+|+++|.|.|||||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G   94 (346)
T d1pxza_          15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             HHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEc
Confidence            46788999999999999999999999999999998    99999999999999999999999999999999999999999


Q ss_pred             eccceEEecCc--EEEeeeccEEEeeeEEecCC-------------------CCCCCceEEcCCCceEEEeeeeeecCCC
Q 020121           86 RGQRIKLTGKG--LRLKECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDD  144 (331)
Q Consensus        86 ~g~g~~i~G~g--i~i~~~~NVIIrnL~i~~g~-------------------~~~~D~I~i~~~~~nVwIDHcs~s~~~D  144 (331)
                      ||..+.|.+.+  |.+.+++|||||||+||.+.                   ..++|+|.++ +++|||||||+|+|..|
T Consensus        95 ~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D  173 (346)
T d1pxza_          95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeecccc
Confidence            99888888655  88888999999999999652                   2357999998 79999999999999999


Q ss_pred             CeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCC-CCCCcccccCeEEEEcceEecccccee
Q 020121          145 GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT-RQRHPRLRFGKVHLYNNYTRNWGIYAV  223 (331)
Q Consensus       145 g~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~-~~R~Pr~r~G~~hv~NN~~~n~~~~~~  223 (331)
                      |++|+++++++||||||+|++|+|++|+|+++....++.++||||||+|.++ .+|.|+.|+|++|++||||++|..|++
T Consensus       174 ~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~  253 (346)
T d1pxza_         174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE
Confidence            9999999999999999999999999999998877667778999999999765 556678899999999999999999999


Q ss_pred             eeccCceEEEEceEEecCCcceeeeeeecc-ccCccccCccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccC
Q 020121          224 CASVESQIYSQCNIYEAGQKKRTFEYYTEK-AADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTME  302 (331)
Q Consensus       224 ~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~  302 (331)
                      ++++++++++|+|||++++.+......... .........+.++..+|.++|++.............|.|++   .|+++
T Consensus       254 ~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~~~~~~---~y~~~  330 (346)
T d1pxza_         254 GGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNE---AFKVE  330 (346)
T ss_dssp             EEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTTT---CCCCC
T ss_pred             eccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccccccCcc---ccccC
Confidence            999999999999999998765322211111 11111234557889999999987653222223345566664   36788


Q ss_pred             CchHHHHHHHHhcccCCC
Q 020121          303 APSDSLKQILQICTGWQS  320 (331)
Q Consensus       303 ~A~~a~~~~v~~~AG~~~  320 (331)
                      +|+ +|++++ ++|||.+
T Consensus       331 ~as-~V~~v~-~~AGal~  346 (346)
T d1pxza_         331 NGN-AAPQLT-KNAGVVT  346 (346)
T ss_dssp             CGG-GHHHHT-TTCSSCC
T ss_pred             CHH-HHHhhh-ccCCCCC
Confidence            986 688865 5999864

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=100.00  E-value=4.6e-64  Score=486.03  Aligned_cols=292  Identities=27%  Similarity=0.401  Sum_probs=233.6

Q ss_pred             CCcccccC----CCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC--------------ceeEecc
Q 020121           18 GQAEGFGR----FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS--------------SYLSVSS   79 (331)
Q Consensus        18 ~~a~Gfg~----~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~--------------~~l~v~s   79 (331)
                      .++.|||+    .|+||+||+||+||||+|     ||+|+++++||++||+|+|+|+|.              .+|.|.|
T Consensus         6 ~a~~G~a~~~g~~t~GG~gg~v~~Vt~l~d-----L~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~~i~v~s   80 (355)
T d1pcla_           6 AATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPS   80 (355)
T ss_pred             CCCCceeccCCCCCcCCCCceEEEeCCHHH-----HHHHHhCcCCceEEEEECeEEEcCCccceeccccccccceEecCC
Confidence            34677776    488999999999999999     999999999999999999999985              3577889


Q ss_pred             ceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC------------CCCCCceEEcCCCceEEEeeeeeecCC----
Q 020121           80 YKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDYD----  143 (331)
Q Consensus        80 n~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~------------~~~~D~I~i~~~~~nVwIDHcs~s~~~----  143 (331)
                      ||||+|+|.+++|.|.+|+|++++|||||||+||++.            ..+.|+|.+. +++|||||||+|+|+.    
T Consensus        81 n~TI~G~G~~~~i~g~gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~-~~~~vwIDHcs~s~~~d~~~  159 (355)
T d1pcla_          81 NTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDD  159 (355)
T ss_pred             CCeEEeccCceEEecCEEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEec-CCccEEEECcccccCccccc
Confidence            9999999999999999999999999999999999752            1247999997 8999999999999964    


Q ss_pred             -------------CCeeeeecCCceEEEeccEEeccCceeeecCCCCCC--CCcceEEEEeceeecCCCCCCcccccCeE
Q 020121          144 -------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCLFDGTRQRHPRLRFGKV  208 (331)
Q Consensus       144 -------------Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~--~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~  208 (331)
                                   |+++|++..+++||||||+|.+|+|++|+|+++...  .+...+||||||||+|+.+|+||+|+|++
T Consensus       160 ~~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~G~~  239 (355)
T d1pcla_         160 KYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSI  239 (355)
T ss_pred             ccccccccccccccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCcccccEE
Confidence                         888999999999999999999999999999987643  33458999999999999999999999999


Q ss_pred             EEEcceEecccc-------ceeeeccCceEEEEceEEecCCcceeeeeeeccccCc-cccCccEEEEcCCeEEcCccccc
Q 020121          209 HLYNNYTRNWGI-------YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADK-LEAKSGLIRSEGDIFLKGAQAQL  280 (331)
Q Consensus       209 hv~NN~~~n~~~-------~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~n~~~ng~~~~~  280 (331)
                      |++||||++|..       |++..+.++++++|+|||++++.+......  ..... ......++...+ .++++.....
T Consensus       240 hv~NN~~~n~~~~~~~~~~y~~~~~~~~~v~~e~NyF~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~g~~~~~  316 (355)
T d1pcla_         240 HAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKN--PECSIVKQFNSKVFSDKG-SLVNGSTTTK  316 (355)
T ss_pred             EEECcEEECCCCcccccceeeeccCcCceEEEeCCEEECCCCccccccC--CCccceeccCCcEEecCc-ccccCccccc
Confidence            999999998754       688899999999999999998765332110  00000 011222333333 3455554332


Q ss_pred             ccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          281 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       281 ~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      .+ ......|.|..+|+ |+++.+++++++.|.++|||.+
T Consensus       317 ~~-~~~~~~~~~~~p~~-~~~~~~a~~v~~~V~~~AGAGk  354 (355)
T d1pcla_         317 LD-TCGLTAYKPTLPYK-YSAQTMTSSLATSINNNAGYGK  354 (355)
T ss_pred             cC-CccccccccCCCcc-ceecChHHHHHHHHhhcCCCCc
Confidence            22 23345677776674 7776543579999999999986

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=100.00  E-value=7.1e-64  Score=485.57  Aligned_cols=288  Identities=25%  Similarity=0.418  Sum_probs=226.8

Q ss_pred             CCcccccC---CCCCCCCC---ceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC--------------ceeEe
Q 020121           18 GQAEGFGR---FAIGGLHG---PVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS--------------SYLSV   77 (331)
Q Consensus        18 ~~a~Gfg~---~ttGG~gg---~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~--------------~~l~v   77 (331)
                      .+++||++   +||||+||   +||+||||+|     ||+|++++.|+.|| .|+|+|++.              .+|.|
T Consensus        12 ~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~d-----L~~al~~~~~p~iI-~v~G~I~~~~~~~~~~~~~~~~~~~i~v   85 (361)
T d1pe9a_          12 APTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKII-QIKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CCSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEE-EECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             cCCcceeecCCCCCcCCCCcCCEEEEeCCHHH-----HHHHHhCCCCeEEE-EEeeEEECCCCccccccccccccceEEe
Confidence            44788886   58877777   6999999999     99999875543333 499999995              35788


Q ss_pred             ccceeeeeeccceEEecCcEEEe---eeccEEEeeeEEecCC------------CCCCCceEEcCCCceEEEeeeeeecC
Q 020121           78 SSYKTIDGRGQRIKLTGKGLRLK---ECEHVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDY  142 (331)
Q Consensus        78 ~sn~TI~G~g~g~~i~G~gi~i~---~~~NVIIrnL~i~~g~------------~~~~D~I~i~~~~~nVwIDHcs~s~~  142 (331)
                      .+||||+|+|.+++|.+.+|.|.   +++||||||||||.+.            ..+.|+|.|..+++|||||||+|+|.
T Consensus        86 ~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~  165 (361)
T d1pe9a_          86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDG  165 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECT
T ss_pred             CCCcEEEEecCCeEEeeeeEEEeeccccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccC
Confidence            99999999999999999999995   5889999999999652            13579999975689999999999986


Q ss_pred             C-----------------CCeeeeecCCceEEEeccEEeccCceeeecCCCCCC--CCcceEEEEeceeecCCCCCCccc
Q 020121          143 D-----------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCLFDGTRQRHPRL  203 (331)
Q Consensus       143 ~-----------------Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~--~d~~~~vT~hhN~f~~~~~R~Pr~  203 (331)
                      .                 |+++|++..+++||||||+|.+|+|++|+|++++..  .++.++||||||||+|+.+|+||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~  245 (361)
T d1pe9a_         166 NFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRV  245 (361)
T ss_dssp             TSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEE
T ss_pred             CccccccccccCcceeeeeeeEEeecCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCe
Confidence            4                 899999999999999999999999999999987642  234579999999999999999999


Q ss_pred             ccCeEEEEcceEecccc-------ceeeeccCceEEEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEcCc
Q 020121          204 RFGKVHLYNNYTRNWGI-------YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA  276 (331)
Q Consensus       204 r~G~~hv~NN~~~n~~~-------~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~  276 (331)
                      |+|++|+|||||+|+..       |++..+.++++++|+|||++++.+....      ........+.+....+.+++|.
T Consensus       246 r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~g~  319 (361)
T d1pe9a_         246 RYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKA------CKVVKKFNGSIFSDNGSVLNGS  319 (361)
T ss_dssp             SSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGG------GGGEEESSCCEEEEESCEETTE
T ss_pred             eCceEEEECceeecCcCccccccceeeecCCCCEEEEEceEEECCCCCcccc------cceeecCCCCEEecCCeeecCc
Confidence            99999999999999753       7999999999999999999876542110      0001112333333444556765


Q ss_pred             ccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          277 QAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       277 ~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      .....  ......+.++++|+ |+++++++++++.|.++||+.+
T Consensus       320 ~~~~~--~~~~~~~~~~~py~-y~~~~~a~~v~~~V~~~AGaGk  360 (361)
T d1pe9a_         320 AVDLS--GCGFSAYTSKIPYI-YDVQPMTTELAQSITDNAGSGK  360 (361)
T ss_dssp             ECCCT--TSSCBCCCSCCCSC-CCCCCCCHHHHHHHHHHCSTTC
T ss_pred             ccccc--CCcccccccCCCcc-cccccchHHHHHHHHhcCCCCC
Confidence            43221  11223444555564 7888755679999999999986

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=100.00  E-value=2.2e-63  Score=481.81  Aligned_cols=292  Identities=19%  Similarity=0.225  Sum_probs=226.0

Q ss_pred             ccCCCcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC----------------------
Q 020121           15 ALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS----------------------   72 (331)
Q Consensus        15 ~~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~----------------------   72 (331)
                      .+++.|||||+.||||+||++|+|||++|     ||+||++++||||+|  +|+|++.                      
T Consensus         2 ~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~e-----L~~al~~~~PriI~~--~gtid~~~~~~~~~~~~~~~~~~~~~~~~   74 (359)
T d1qcxa_           2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CCCccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEE--CceEccccccccccccccccccccccccc
Confidence            35688999999999999999999999999     999999999999997  5777764                      


Q ss_pred             ---------------------------ceeEeccceeeeeeccceEEecCcEEE-eeeccEEEeeeEEecCCC---CCCC
Q 020121           73 ---------------------------SYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLEFEGGRG---HDVD  121 (331)
Q Consensus        73 ---------------------------~~l~v~sn~TI~G~g~g~~i~G~gi~i-~~~~NVIIrnL~i~~g~~---~~~D  121 (331)
                                                 .+|.|.|||||+|+|.+++|.|.+|++ ++++|||||||+||++..   +++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~D  154 (359)
T d1qcxa_          75 AINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCC
T ss_pred             ccccccccccccccCcceeeeeeccCcceEEeCCCCeEEeccCCeEEEccceEEEeCCccEEEeCeEEecCCCCCCCCCC
Confidence                                       258889999999999999999999977 579999999999997642   4689


Q ss_pred             ceEEcCCCceEEEeeeeeecCCCC-eeeeecCCceEEEeccEEeccCceeeecCCCCC----CCCcceEEEEeceeecCC
Q 020121          122 GIQIKPNSRHIWIDRCSLRDYDDG-LIDITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       122 ~I~i~~~~~nVwIDHcs~s~~~Dg-~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~----~~d~~~~vT~hhN~f~~~  196 (331)
                      +|.|. +++|||||||+|+|..|+ ++++++.+++||||||+|.+|.|.++++.++..    ..++.++||||||||+++
T Consensus       155 ai~i~-~s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~  233 (359)
T d1qcxa_         155 AITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNL  233 (359)
T ss_dssp             SEEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESB
T ss_pred             eEEee-CCCCEEEEeeeccccCCCceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccCC
Confidence            99997 899999999999998876 558888899999999999999999999866543    234568999999999999


Q ss_pred             CCCCcccccCe-EEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeee----eecccc---CccccCccEEEEc
Q 020121          197 RQRHPRLRFGK-VHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY----YTEKAA---DKLEAKSGLIRSE  268 (331)
Q Consensus       197 ~~R~Pr~r~G~-~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~----~~~~~~---~~~~~~~g~~~~~  268 (331)
                      .+|+||+|+|. +|++||||+||..|++..++++++++|+|||++++.+.....    +.....   .......|.. ..
T Consensus       234 ~~R~P~~r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~  312 (359)
T d1qcxa_         234 SGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRS-CQ  312 (359)
T ss_dssp             CSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSC-CC
T ss_pred             CCCCccccCCceEEEEeeEEeCcCCEEEecCCceEEEEEeeEEECCCCcccccccceeeccCCcccccccccccccc-cc
Confidence            99999999996 899999999999999999999999999999998765432111    000000   0000000100 12


Q ss_pred             CCeEEcCcccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          269 GDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       269 ~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      .+.+.+...... ........|.|+  | .|++++|+ +|++.|.++||+.+
T Consensus       313 ~n~~~~~~~~~~-~~~~~~~~~~~~--~-~~t~~~a~-~v~~~V~~~AG~GK  359 (359)
T d1qcxa_         313 LNAFGNSGSMSG-SDTSIISKFAGK--T-IAAAHPPG-AIAQWTMKNAGQGK  359 (359)
T ss_dssp             CCEEESCCCCCC-BCGGGGGGGTTS--C-CCCCCCGG-GHHHHHHHHSSTTC
T ss_pred             ccccccCccccc-CCcccccccCCc--c-ccCcCCHH-HHHHHHHhcCCCCC
Confidence            234444322210 111111223332  4 37899997 58888899999864

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.1e-62  Score=476.87  Aligned_cols=285  Identities=29%  Similarity=0.503  Sum_probs=229.1

Q ss_pred             cCCCcccccC---CCCCCCCCc---eEEecCCCCCCCchHHHHhh---cCCCeEEEEEeeeEEEeCc-------------
Q 020121           16 LAGQAEGFGR---FAIGGLHGP---VYFVTNLSDDGPGSLREGCR---RREPLWIVFEVSGTIHLSS-------------   73 (331)
Q Consensus        16 ~~~~a~Gfg~---~ttGG~gg~---vv~Vt~l~d~g~GsLr~ai~---~~~pr~Ivf~v~G~I~l~~-------------   73 (331)
                      ..+.++|||+   +||||.++.   ||+|+|++|     |++||.   +++||+|+  ++|+|+...             
T Consensus         7 ~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~e-----l~~~l~~~~~~~P~vI~--~~gti~~~~~~~~~~~~~~~~~   79 (399)
T d1bn8a_           7 TLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPLGLNDYK   79 (399)
T ss_dssp             CCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBCCHHHHC
T ss_pred             cccCCCceeecCCCcCCCCCCCCCceEecCCHHH-----HHHHHhhccCCCceEEE--EccEEecccccccccccccccc
Confidence            3445999986   699998774   899999999     999994   67899877  788997631             


Q ss_pred             ------------------------------------------eeEeccceeeeeeccceEEecCcEEEeeeccEEEeeeE
Q 020121           74 ------------------------------------------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLE  111 (331)
Q Consensus        74 ------------------------------------------~l~v~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~  111 (331)
                                                                +|+|.|||||+|+|.+++|.|.+|+|+ ++|||||||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~-a~NVIirnl~  158 (399)
T d1bn8a_          80 DPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIE  158 (399)
T ss_dssp             CTTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEEC-SEEEEEESCE
T ss_pred             cccccccccccccChhhhccccccccccccccccccccccceEEecCCCceEEecCCCcEEeccEEEEe-CceEEEeCeE
Confidence                                                      488999999999999999999999995 9999999999


Q ss_pred             EecCC----------------CCCCCceEEcCCCceEEEeeeeeecCC-----------------CCeeeeecCCceEEE
Q 020121          112 FEGGR----------------GHDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITV  158 (331)
Q Consensus       112 i~~g~----------------~~~~D~I~i~~~~~nVwIDHcs~s~~~-----------------Dg~~di~~~s~~vTi  158 (331)
                      ||+..                ..+.|+|+|. +++|||||||+|+|+.                 |++||+++++++|||
T Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTv  237 (399)
T d1bn8a_         159 FQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM  237 (399)
T ss_dssp             EECCCCSSCEEETTSSSSCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEE
T ss_pred             EEcCcccccccccccccccCcCCCCceEEEe-cCccEEEECceeccCCcccccccccccccccccccceeecccceeEEe
Confidence            99653                1357999998 7999999999999874                 999999999999999


Q ss_pred             eccEEeccCceeeecCCCCCCCC-cceEEEEeceeecCCCCCCcccccCeEEEEcceEecccc-------ceeeeccCce
Q 020121          159 SRCYFTQHDKTMLIGADPSHVGD-RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-------YAVCASVESQ  230 (331)
Q Consensus       159 S~n~f~~h~k~~liG~~~~~~~d-~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~-------~~~~~~~~a~  230 (331)
                      |||+|++|+|++|+|++|+...+ +.++||||||||+++.+|+||+|+|++|+|||||++|..       |++..+++++
T Consensus       238 S~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~  317 (399)
T d1bn8a_         238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSK  317 (399)
T ss_dssp             ESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCE
T ss_pred             ECccccCCcceeEecCCCCcccccCCceEEEEeeEecCccccCccccccEEEEEccEeECCCcccccccceeeccccCce
Confidence            99999999999999999876443 568999999999999999999999999999999999864       8999999999


Q ss_pred             EEEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEcCcccccc--cCcccceeecCCCCCCCCccCCchHHH
Q 020121          231 IYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLL--TGVGEECVFHPSEYYPTWTMEAPSDSL  308 (331)
Q Consensus       231 v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~~--~~~~~~~~~~p~~~y~~y~~~~A~~a~  308 (331)
                      +++|+|||++++.+.......       ......+...++++ ++......  ........|.|+  | +|++++|+ +|
T Consensus       318 il~EgN~F~~~~~~~~~~~~~-------~~~g~~~~~~gn~~-~g~~~~~~~~~~~~~~~~~~p~--y-~y~~~~A~-~v  385 (399)
T d1bn8a_         318 IYAQNNVIDVPGLSAAKTISV-------FSGGTALYDSGTLL-NGTQINASAANGLSSSVGWTPS--L-HGSIDASA-NV  385 (399)
T ss_dssp             EEEESCEEECTTCCSGGGEEE-------CTTCCBCEEESCEE-TTEECCHHHHTTCBSCCSCCCC--S-CCCCCCHH-HH
T ss_pred             EEEEeeEEECCCCcccceecc-------ccCCceEecCCcEe-cCccccCccCcCcccccccccc--c-ccccCCHH-HH
Confidence            999999999887543211110       01122344445544 33322111  122344566676  4 37899996 68


Q ss_pred             HHHHHhcccCCCc
Q 020121          309 KQILQICTGWQSI  321 (331)
Q Consensus       309 ~~~v~~~AG~~~~  321 (331)
                      ++.|.++|||.+.
T Consensus       386 ~~~V~a~AGAGkl  398 (399)
T d1bn8a_         386 KSNVINQAGAGKL  398 (399)
T ss_dssp             HHHHHHHCSTTSC
T ss_pred             HHHhhccCCCccc
Confidence            9999999999874

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=100.00  E-value=1.7e-59  Score=454.64  Aligned_cols=294  Identities=17%  Similarity=0.147  Sum_probs=219.6

Q ss_pred             cCCCcccccCCCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEE-------------------------------
Q 020121           16 LAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFE-------------------------------   64 (331)
Q Consensus        16 ~~~~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~-------------------------------   64 (331)
                      +.+.|||||+.||||++|++|+|||++|     ||+||++++||+|+|+                               
T Consensus         3 v~~~a~Gfa~~ttGG~~g~~~~Vtt~~e-----L~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (359)
T d1idka_           3 VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAID   77 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEEC
T ss_pred             ccccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEEcceEeccccccccccccccccccccccccccc
Confidence            5688999999999999999999999999     9999999999999973                               


Q ss_pred             ----------------eeeEEEeCceeEeccceeeeeeccceEEecCcEEE-eeeccEEEeeeEEecCCC---CCCCceE
Q 020121           65 ----------------VSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLEFEGGRG---HDVDGIQ  124 (331)
Q Consensus        65 ----------------v~G~I~l~~~l~v~sn~TI~G~g~g~~i~G~gi~i-~~~~NVIIrnL~i~~g~~---~~~D~I~  124 (331)
                                      +++.+.+..+|+|+|||||+|+|.+++|.|.+|.| ++++|||||||+||++..   +++|+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~  157 (359)
T d1idka_          78 QDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAIT  157 (359)
T ss_dssp             GGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEE
T ss_pred             cccccccccccCccceeeeeccCCCceEeCCCceEEeccCCeEEecCceEEEecCceEEEECcEEecCCCCCCCCCCeEE
Confidence                            22333334568899999999999999999999988 579999999999997642   4679999


Q ss_pred             EcCCCceEEEeeeeeecCCCCee-eeecCCceEEEeccEEeccCceeeecCCCCC----CCCcceEEEEeceeecCCCCC
Q 020121          125 IKPNSRHIWIDRCSLRDYDDGLI-DITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQR  199 (331)
Q Consensus       125 i~~~~~nVwIDHcs~s~~~Dg~~-di~~~s~~vTiS~n~f~~h~k~~liG~~~~~----~~d~~~~vT~hhN~f~~~~~R  199 (331)
                      |. +++|||||||+|+|..|+.+ +..+.+++||||||+|.+|.+.++.+.+..+    ..+...+||||||||+++.+|
T Consensus       158 i~-~s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R  236 (359)
T d1idka_         158 LD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGR  236 (359)
T ss_dssp             EC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSC
T ss_pred             ee-CCccEEEEeeeeccCCCCceeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccCCCC
Confidence            97 89999999999999999976 5667899999999999988776665433221    123346999999999999999


Q ss_pred             CcccccC-eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeee---eeeccccCccccCccE--EEEcCCeEE
Q 020121          200 HPRLRFG-KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFE---YYTEKAADKLEAKSGL--IRSEGDIFL  273 (331)
Q Consensus       200 ~Pr~r~G-~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~---~~~~~~~~~~~~~~g~--~~~~~n~~~  273 (331)
                      +||+|+| .+|++||||+||..|++.+++++++++|+|||++...+....   .+.............+  .....+.+.
T Consensus       237 ~P~~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  316 (359)
T d1idka_         237 SPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFG  316 (359)
T ss_dssp             TTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEE
T ss_pred             CceecccceEEEECcEEECccceEEecCCceeEEEeceEEeCCcCCccccCCceEecccCCCCcccccccCccccccccc
Confidence            9999998 699999999999999999999999999999998754332110   0000000000000000  001233444


Q ss_pred             cCcccccccCcccceeecCCCCCCCCccCCchHHHHHHHHhcccCCC
Q 020121          274 KGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  320 (331)
Q Consensus       274 ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~  320 (331)
                      +.....   .......+.+.++| .|++++|+ +|++.|.++||+.+
T Consensus       317 ~~~~~~---~~~~~~~~~~~~~~-~~~~~~a~-~v~~~V~~nAG~Gk  358 (359)
T d1idka_         317 SSGTFS---EDSTSFLSDFEGKN-IASASAYT-SVASRVVANAGQGN  358 (359)
T ss_dssp             SSCCCC---CBCCTTGGGGTTSC-CCCCCCGG-GHHHHHHHHCSTTC
T ss_pred             cccccc---cCCccccccccccc-ccCcCCHH-HHHHhhhhcCCCCC
Confidence            432211   11111112233335 37889986 68888888999976

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=100.00  E-value=1e-48  Score=377.78  Aligned_cols=234  Identities=22%  Similarity=0.226  Sum_probs=188.5

Q ss_pred             ccceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC--CCCCCceEEcCCCceEEEeeeeeecCCC-----------
Q 020121           78 SSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR--GHDVDGIQIKPNSRHIWIDRCSLRDYDD-----------  144 (331)
Q Consensus        78 ~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~--~~~~D~I~i~~~~~nVwIDHcs~s~~~D-----------  144 (331)
                      .+++||+|+  .+.+.+.+|.+.+++|||||||+||.+.  ..+.|+|.++ +++|||||||+|+|..|           
T Consensus        88 ~~~i~i~G~--~~~~~~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~-~~~~vwIDH~s~s~~~d~~~~~~~~~~~  164 (353)
T d1o88a_          88 TKGITIIGA--NGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTT  164 (353)
T ss_dssp             CSCEEEEEC--TTCCBSSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEE-SCCSEEEESCEEECCSCCCTTCGGGTCS
T ss_pred             CCCEEEEcC--CCccccceEEEeccceEEEeCcEEecCCCCCCCCcEEEEe-cccEEEEEccEEeccccccccccCcccc
Confidence            456777765  4567889999999999999999999764  3468999998 89999999999999765           


Q ss_pred             --CeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccce
Q 020121          145 --GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYA  222 (331)
Q Consensus       145 --g~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~  222 (331)
                        +++|+++++++||||||+|.+|.|++|+|++++..   ..+||||||||+++.+|+||+|+|.+|+|||||+||..|+
T Consensus       165 ~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~~~~---~~~vT~hhN~~~~~~~R~P~~~~g~~h~~NN~~~n~~~~~  241 (353)
T d1o88a_         165 FESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDT---GRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSG  241 (353)
T ss_dssp             SCCSEEEESSCCEEEEESCEEEEEEECCEESSSSSCC---CCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCS
T ss_pred             ceeeEEeccCcccEEEECcccccccccceeCCccCcC---CceEEEEeeEEcCCccCCcceecceEEEEEEEEecccceE
Confidence              56889999999999999999999999999887542   2489999999999999999999999999999999999999


Q ss_pred             eeeccCceEEEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEcCccccc-------------ccCccccee
Q 020121          223 VCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL-------------LTGVGEECV  289 (331)
Q Consensus       223 ~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~-------------~~~~~~~~~  289 (331)
                      +..++++++++|+|||++++.+....+        +....|++...+|.+.++.....             .........
T Consensus       242 ~~~~~~~~~~~e~N~f~~~~~p~~~~~--------~~~~~g~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (353)
T d1o88a_         242 LNVRQNGQALIENNWFEKAINPVTSRY--------DGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTG  313 (353)
T ss_dssp             EEEETTCEEEEESCEEEEEESSEEECS--------SSSSCCEEEEESCSCCSTTHHHHTTEECCCCSSCCEECTTCCCCS
T ss_pred             EecCCCceEEEEeeEEecccCCccccc--------cCCcceeEEECCCeeecccccccccccccccccccccCCcccccc
Confidence            999999999999999998876543221        23467788888888876432100             001112234


Q ss_pred             ecCCCCCCCCccCCchHHHHHHHHhcccCCCcCCCCCc
Q 020121          290 FHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADV  327 (331)
Q Consensus       290 ~~p~~~y~~y~~~~A~~a~~~~v~~~AG~~~~~~~~~~  327 (331)
                      +.|+.+|+ |++++|+ +++++|.++|||.+--.+++.
T Consensus       314 ~~~~~~y~-~t~~~A~-~v~~~V~~~AGaGk~~~~~~~  349 (353)
T d1o88a_         314 TFPTVAYN-YSPVSAQ-CVKDKLPGYAGVGKNLATLTS  349 (353)
T ss_dssp             CCCCCCSC-CCCCCHH-HHHHHGGGTSSSSSTTCCCCG
T ss_pred             cccCCCcc-cccCCHH-HHHHHHHhcCCCCCCcccccc
Confidence            45666674 8999996 699999999999995555444

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=98.63  E-value=2.3e-07  Score=87.86  Aligned_cols=93  Identities=20%  Similarity=0.360  Sum_probs=56.0

Q ss_pred             EEEeeeccEEEeeeEEecCCC------------------------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC
Q 020121           97 LRLKECEHVIICNLEFEGGRG------------------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ  152 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~------------------------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~  152 (331)
                      |.+.+++||.|++|+|+....                        ...|||.+. .++||||++|.|....|.+ .++..
T Consensus       154 i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gDD~i-~~ks~  231 (376)
T d1bhea_         154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDNV-AIKAY  231 (376)
T ss_dssp             EEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCSE-EEEEC
T ss_pred             EEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeecc-ccceEEEEeceeecCCCce-eeecc
Confidence            677778888888888876421                        135677775 6677777777775544443 44432


Q ss_pred             -----CceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCC
Q 020121          153 -----STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       153 -----s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                           +.+|+|.+|.|.. ..++.+|+...    ...+|+|++|.|.++
T Consensus       232 ~~~~~~~ni~i~n~~~~~-~~g~~iGs~~~----~v~nv~i~n~~~~~~  275 (376)
T d1bhea_         232 KGRAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGT  275 (376)
T ss_dssp             TTSCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESC
T ss_pred             cCCCCcceEEEEeeEEec-CCCceeccccC----CEEEEEEEeeeEcCC
Confidence                 3467777777764 33555665321    123567777766654

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=98.50  E-value=7.8e-07  Score=85.50  Aligned_cols=116  Identities=21%  Similarity=0.306  Sum_probs=67.2

Q ss_pred             hHHHHhhcCCCeEEEEEeeeEEE-----eCceeEeccceeeeeecc-ceEEecCc-EEEeeeccEEEeeeEEecCCC---
Q 020121           48 SLREGCRRREPLWIVFEVSGTIH-----LSSYLSVSSYKTIDGRGQ-RIKLTGKG-LRLKECEHVIICNLEFEGGRG---  117 (331)
Q Consensus        48 sLr~ai~~~~pr~Ivf~v~G~I~-----l~~~l~v~sn~TI~G~g~-g~~i~G~g-i~i~~~~NVIIrnL~i~~g~~---  117 (331)
                      +||+||+...|...|+=..|+-+     +.......+.+||.+.+. .+.|.|.. ++|. +++|+|++|+|+++..   
T Consensus         8 tiq~Ai~~a~pGDtI~l~~GtY~~~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~-g~~v~i~Gl~~~~~~~~~~   86 (481)
T d1ofla_           8 TLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLILEGIWFKDGNRAIQ   86 (481)
T ss_dssp             HHHHHHHHCCTTCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEEEESCEEEEECCCGG
T ss_pred             HHHHHHHhCCCCCEEEECCCEEEcCEEEeccCcccCCCEEEEeCCCCceEEcCCCeEEEE-eCCEEEeCeEEECCCCccc
Confidence            49999998777654443455543     222222335689999853 56777754 7775 7899999999986531   


Q ss_pred             ---CCCCceEEcCCCceEEEeeeeeecCCCCe---eeee-----cCCceEEEeccEEec
Q 020121          118 ---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL---IDIT-----RQSTDITVSRCYFTQ  165 (331)
Q Consensus       118 ---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~---~di~-----~~s~~vTiS~n~f~~  165 (331)
                         ....++... .+.++.|.+|.+.......   .+..     ....+.+|++|.|..
T Consensus        87 ~~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~  144 (481)
T d1ofla_          87 AWKSHGPGLVAI-YGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTD  144 (481)
T ss_dssp             GCCTTSCCSEEE-CSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEEC
T ss_pred             eeeccCCceEEe-EeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEec
Confidence               112333332 3456667777665432211   1110     123466677776653

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.43  E-value=4.7e-06  Score=77.58  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             CCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec-cCce-eeecCCCCCCCCcceEEEEeceeecCC
Q 020121          119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       119 ~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~-~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      ..|||.+. +++||+|++|.|..+.|. +.++ ...+|+|++|.+.. |.-. .-+|...   ...-.+|++.++.|.++
T Consensus       151 NtDGidi~-~s~nV~I~n~~i~tgDDc-Iaik-s~~ni~i~n~~c~~~hG~sigslG~~~---~~~v~nV~v~n~~i~~t  224 (335)
T d1czfa_         151 NTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVN-SGENIWFTGGTCIGGHGLSIGSVGDRS---NNVVKNVTIEHSTVSNS  224 (335)
T ss_dssp             SCCSEEEC-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSCCEEEEEECSSS---CCEEEEEEEEEEEEEEE
T ss_pred             CCCceEec-CCCeEEEEeeEEecCCce-EEec-CceEEEEEEEEEECCCCccccccCCCC---cCCEeEEEEEeeEEECC
Confidence            46999997 899999999999877666 5785 46799999998874 3221 1235322   12235889999888764


Q ss_pred             C
Q 020121          197 R  197 (331)
Q Consensus       197 ~  197 (331)
                      .
T Consensus       225 ~  225 (335)
T d1czfa_         225 E  225 (335)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.19  E-value=2.6e-05  Score=72.51  Aligned_cols=91  Identities=16%  Similarity=0.315  Sum_probs=60.2

Q ss_pred             eeccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec-cCcee-eec
Q 020121          101 ECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTM-LIG  173 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~~-liG  173 (331)
                      .++||.|+||+|+...     ....|||.+. +++||+|++|.|....|. +.++ ...+|+|++|.+.. |.-.+ -+|
T Consensus       134 ~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaik-s~~ni~i~n~~c~~ghG~sigslG  210 (339)
T d1ia5a_         134 GSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDDC-VAVN-SGENIYFSGGYCSGGHGLSIGSVG  210 (339)
T ss_dssp             SCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSSCEEEEEEC
T ss_pred             cccEEEEEEEEEecccCCccCCCCCCccccC-CCCeEEEeeeEEEcCCCe-EEec-CccEEEEEEeEEeccccceecccc
Confidence            3455555555555321     2346999997 899999999999976665 5785 46799999999984 32111 245


Q ss_pred             CCCCCCCCcceEEEEeceeecCCC
Q 020121          174 ADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       174 ~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      +..   ...-.+|++.++.|.+..
T Consensus       211 ~~~---~~~v~nV~v~n~~~~~t~  231 (339)
T d1ia5a_         211 GRS---DNTVKNVTFVDSTIINSD  231 (339)
T ss_dssp             SSS---CCEEEEEEEEEEEEESCS
T ss_pred             cCc---cccEEEEEEECCcccCCc
Confidence            432   122247888888887653

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.18  E-value=1.4e-05  Score=74.51  Aligned_cols=152  Identities=15%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             eEecc--ceeeeeeccc---------eEEecCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec--
Q 020121           75 LSVSS--YKTIDGRGQR---------IKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD--  141 (331)
Q Consensus        75 l~v~s--n~TI~G~g~g---------~~i~G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~--  141 (331)
                      |.|..  .-||+|+|+.         ...+-.-|.+.+++|+.|++|+|+....   =.|.+. .+++|.|++..+..  
T Consensus        74 i~i~G~g~g~IDG~G~~wW~~~~~~~~~~rP~~l~~~~~~nv~i~gitl~nsp~---w~~~~~-~s~nv~i~~v~I~~~~  149 (339)
T d1ia5a_          74 LTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPV---QVFSVA-GSDYLTLKDITIDNSD  149 (339)
T ss_dssp             CEEEECTTCEEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSS---CCEEEE-SCEEEEEESCEEECGG
T ss_pred             EEEEecCCCeEeCCchhhhhcccCCCCCCCCeEEEEEecCCCEEeceEEEcCCc---eEEEEe-cccEEEEEEEEEeccc
Confidence            44542  4599999852         1112223888899999999999998654   357886 89999999999853  


Q ss_pred             -------CCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCC-------cccccCe
Q 020121          142 -------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH-------PRLRFGK  207 (331)
Q Consensus       142 -------~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~-------Pr~r~G~  207 (331)
                             ..||. |+ ..+++|+|++|.|...+-+.-+.+.        -++++.++++.....-.       ..-..-.
T Consensus       150 ~~~~~~~NtDGi-di-~~s~nV~I~n~~i~~gDDcIaiks~--------~ni~i~n~~c~~ghG~sigslG~~~~~~v~n  219 (339)
T d1ia5a_         150 GDDNGGHNTDAF-DI-GTSTYVTISGATVYNQDDCVAVNSG--------ENIYFSGGYCSGGHGLSIGSVGGRSDNTVKN  219 (339)
T ss_dssp             GTTTTCCSCCSE-EE-ESCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSSCEEEEEECSSSCCEEEE
T ss_pred             CCccCCCCCCcc-cc-CCCCeEEEeeeEEEcCCCeEEecCc--------cEEEEEEeEEeccccceecccccCccccEEE
Confidence                   35885 88 4689999999999988777777643        25777777765433211       1100124


Q ss_pred             EEEEcceEeccccceeee----ccC---ceEEEEceEEecC
Q 020121          208 VHLYNNYTRNWGIYAVCA----SVE---SQIYSQCNIYEAG  241 (331)
Q Consensus       208 ~hv~NN~~~n~~~~~~~~----~~~---a~v~~e~N~f~~~  241 (331)
                      +++.|+.+.+.. +++..    +.+   .+|.+|+..+++.
T Consensus       220 V~v~n~~~~~t~-~GirIKt~~g~~G~v~nV~f~ni~~~~v  259 (339)
T d1ia5a_         220 VTFVDSTIINSD-NGVRIKTNIDTTGSVSDVTYKDITLTSI  259 (339)
T ss_dssp             EEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEE
T ss_pred             EEEECCcccCCc-ceeEEeeeCCCCEEEEEEEEEEEEEecc
Confidence            688888888754 45432    111   2555566556554

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=98.12  E-value=8e-05  Score=69.26  Aligned_cols=100  Identities=21%  Similarity=0.375  Sum_probs=65.6

Q ss_pred             EEeeeccEEEeeeEEecCC-------------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121           98 RLKECEHVIICNLEFEGGR-------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  164 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~-------------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~  164 (331)
                      .+.+++||.|+||+|+...             ....|||.+. ++++|+|++|.|....|. +.++ ...+|+|++|.|.
T Consensus       131 ~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~-~s~nv~I~n~~i~~gDD~-iaik-~~~ni~i~n~~~~  207 (349)
T d1hg8a_         131 DITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVT-SGTNIVVSNMYCS  207 (349)
T ss_dssp             EEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEES-SEEEEEEEEEEEE
T ss_pred             EEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeC-CCCeEEEEeeeecCCCCc-eEec-cccceEEEEEEEe
Confidence            3345667777777775421             1346999997 889999999999977775 4675 5689999999997


Q ss_pred             c-cCcee-eecCCCCCCCCcceEEEEeceeecCCCCCCcccc
Q 020121          165 Q-HDKTM-LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  204 (331)
Q Consensus       165 ~-h~k~~-liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r  204 (331)
                      . |.... -+|+..   ...--+|++.++.+.+.. |..|++
T Consensus       208 ~ghg~sigs~G~~~---~~~v~nV~v~n~~~~~~~-~g~rIK  245 (349)
T d1hg8a_         208 GGHGLSIGSVGGKS---DNVVDGVQFLSSQVVNSQ-NGCRIK  245 (349)
T ss_dssp             SSCCEEEEEESSSS---CCEEEEEEEEEEEEEEEE-EEEEEE
T ss_pred             CCcccccccCCCcc---cccEEEEEEEcceecCCc-ceEEEE
Confidence            4 43322 245432   112247888888776543 345553

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=98.09  E-value=2.8e-05  Score=74.27  Aligned_cols=109  Identities=15%  Similarity=0.321  Sum_probs=79.3

Q ss_pred             cceeeeeeccceEEecC---cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCce
Q 020121           79 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTD  155 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~---gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~  155 (331)
                      +|.+|.|    +++...   .|.+.+++||.|+||+|+.+.....|||.+. + +||||.+|.+..+ |..+.++.++.+
T Consensus       136 ~n~~i~g----it~~nsp~~~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~-~-snv~I~n~~i~~g-DDcIaiks~s~n  208 (422)
T d1rmga_         136 THFSVHD----IILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNK-DECVTVKSPANN  208 (422)
T ss_dssp             EEEEEEE----EEEECCSSCSEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESS-SEEEEEEEEEEE
T ss_pred             eeeEEEC----cEecCCCceEEEEeccccEEEEeeEEcCCCCCccceEeec-c-cEEEEEeeEEEcC-CCccccCCCCcc
Confidence            4566655    345443   4788889999999999998655567999996 4 5899999999765 555688888999


Q ss_pred             EEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 020121          156 ITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       156 vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                      |+|+++.+. +..++-+|+-...  ..-.+|++.+++|.+..
T Consensus       209 I~i~n~~c~-~g~GisiGs~g~~--~~V~nV~v~n~~~~~s~  247 (422)
T d1rmga_         209 ILVESIYCN-WSGGCAMGSLGAD--TDVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             EEEEEEEEE-SSSEEEEEEECTT--EEEEEEEEEEEEEESSS
T ss_pred             EEEEeeEEc-cccceeEeeccCC--CCEEEEEEEeEEEeCCC
Confidence            999998876 3446667753221  11247889888887654

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.98  E-value=3.1e-05  Score=72.16  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----------------CCCCeeeeecCCceEEEe
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVS  159 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----------------~~Dg~~di~~~s~~vTiS  159 (331)
                      |.+.+++|+.|++|+++....   =.+.+. .+++|+|+++++..                 ..||+ |+ ..+++|+|+
T Consensus       107 i~~~~~~nv~i~~i~l~nsp~---w~~~~~-~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGi-Di-~~s~nv~I~  180 (349)
T d1hg8a_         107 VVQKTTGNSKITNLNIQNWPV---HCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGF-DI-SSSDHVTLD  180 (349)
T ss_dssp             EEEEEESSEEEESCEEECCSS---EEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSE-EE-ESCEEEEEE
T ss_pred             EEEeccCCeEEEeeEEeCCCc---eEEEEe-ccceEEEEEEEEECCCcccccccccCccccCCCCeE-ee-CCCCeEEEE
Confidence            456689999999999998643   457786 89999999999843                 45886 88 468999999


Q ss_pred             ccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCC----cccccC---eEEEEcceEeccccceeee--c--cC
Q 020121          160 RCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH----PRLRFG---KVHLYNNYTRNWGIYAVCA--S--VE  228 (331)
Q Consensus       160 ~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~----Pr~r~G---~~hv~NN~~~n~~~~~~~~--~--~~  228 (331)
                      +|.|...+-+.-+...        .+|++.+|+|.+...-.    -....+   .+++.|+.+.+.. +++..  .  .+
T Consensus       181 n~~i~~gDD~iaik~~--------~ni~i~n~~~~~ghg~sigs~G~~~~~~v~nV~v~n~~~~~~~-~g~rIKs~~g~g  251 (349)
T d1hg8a_         181 NNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCRIKSNSGAT  251 (349)
T ss_dssp             EEEEECSSCSEEESSE--------EEEEEEEEEEESSCCEEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEEEEEETTCC
T ss_pred             eeeecCCCCceEeccc--------cceEEEEEEEeCCcccccccCCCcccccEEEEEEEcceecCCc-ceEEEEEEcCCC
Confidence            9999987776666532        37888888886532111    000112   4678888887643 34322  1  11


Q ss_pred             ---ceEEEEceEEecCC
Q 020121          229 ---SQIYSQCNIYEAGQ  242 (331)
Q Consensus       229 ---a~v~~e~N~f~~~~  242 (331)
                         .+|.+|+..+++..
T Consensus       252 G~v~nI~~~ni~~~~v~  268 (349)
T d1hg8a_         252 GTINNVTYQNIALTNIS  268 (349)
T ss_dssp             EEEEEEEEEEEEEEEEE
T ss_pred             ccEEEeEEEEEEEcCcc
Confidence               25566666666553

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.95  E-value=7.9e-05  Score=69.09  Aligned_cols=94  Identities=19%  Similarity=0.408  Sum_probs=65.3

Q ss_pred             EEEeeeccEEEeeeEEecCC-----CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec-cCcee
Q 020121           97 LRLKECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTM  170 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~-----~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~~  170 (331)
                      |.+ .++||.|+||+|....     ....|||.+. +++||+|.+|.|..+.| .+.++ ...+++|++|.+.. |.-.+
T Consensus       126 i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gDD-cIaik-~g~ni~i~n~~c~~~~g~si  201 (336)
T d1nhca_         126 ISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDD-CIAIN-SGESISFTGGTCSGGHGLSI  201 (336)
T ss_dssp             EEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSE-EEEES-SEEEEEEESCEEESSSEEEE
T ss_pred             EEE-eeeEEEEEEEEEECcCCCccccCCCceEEcC-CccCEeEecceEeecCC-cEEee-ccceEEEEEeeeccccccee
Confidence            444 3678888888887642     2456999997 88999999999985544 56886 45799999999874 22222


Q ss_pred             -eecCCCCCCCCcceEEEEeceeecCCC
Q 020121          171 -LIGADPSHVGDRCIRVTIHHCLFDGTR  197 (331)
Q Consensus       171 -liG~~~~~~~d~~~~vT~hhN~f~~~~  197 (331)
                       -+|+..   .+.--+|+|.++.|.+..
T Consensus       202 gslG~~~---~~~v~nV~v~n~~~~~t~  226 (336)
T d1nhca_         202 GSVGGRD---DNTVKNVTISDSTVSNSA  226 (336)
T ss_dssp             EEESSSS---CCEEEEEEEEEEEEESCS
T ss_pred             eeccccc---cccEEEEEEEeceeeCCC
Confidence             245432   122248899999887653

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.81  E-value=0.00066  Score=62.65  Aligned_cols=130  Identities=13%  Similarity=0.192  Sum_probs=86.9

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec---------CCCCeeeeecCCceEEEeccEEeccC
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---------YDDGLIDITRQSTDITVSRCYFTQHD  167 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~---------~~Dg~~di~~~s~~vTiS~n~f~~h~  167 (331)
                      |.+.+++||.|++|+|+....|   .|.+.  ++||.|++..+..         ..||+ |+ ..+++|+|++|.|...+
T Consensus       103 i~~~~~~nv~i~giti~nsp~~---~i~i~--~~nv~i~nv~I~~~~~~~~~~~NtDGi-di-~~s~nv~I~n~~i~~gD  175 (336)
T d1nhca_         103 MYIHDVEDSTFKGINIKNTPVQ---AISVQ--ATNVHLNDFTIDNSDGDDNGGHNTDGF-DI-SESTGVYISGATVKNQD  175 (336)
T ss_dssp             EEEEEEEEEEEESCEEECCSSC---CEEEE--EEEEEEESCEEECTTHHHHTCCSCCSE-EE-CSCEEEEEESCEEESSS
T ss_pred             EEEeccCCcEEEeEEEEcCCce---EEEEe--eeEEEEEEEEEECcCCCccccCCCceE-Ec-CCccCEeEecceEeecC
Confidence            7888999999999999987654   46664  6799999999863         45886 88 46899999999999887


Q ss_pred             ceeeecCCCCCCCCcceEEEEeceeecCCCCC-Cccc------ccCeEEEEcceEeccccceeee----ccC---ceEEE
Q 020121          168 KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR-HPRL------RFGKVHLYNNYTRNWGIYAVCA----SVE---SQIYS  233 (331)
Q Consensus       168 k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R-~Pr~------r~G~~hv~NN~~~n~~~~~~~~----~~~---a~v~~  233 (331)
                      -+.-+...        -++++.++.+.....- .-.+      ..-.+++.|+.+.+.. +++..    +.+   .+|.+
T Consensus       176 DcIaik~g--------~ni~i~n~~c~~~~g~sigslG~~~~~~v~nV~v~n~~~~~t~-~G~rIKt~~~~~G~v~nV~f  246 (336)
T d1nhca_         176 DCIAINSG--------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITY  246 (336)
T ss_dssp             EEEEESSE--------EEEEEESCEEESSSEEEEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEE
T ss_pred             CcEEeecc--------ceEEEEEeeecccccceeeeccccccccEEEEEEEeceeeCCC-ceeEEEEecCCCceEeeEEE
Confidence            77766543        2577766655332111 0011      1125688888888754 35432    112   25556


Q ss_pred             EceEEecCC
Q 020121          234 QCNIYEAGQ  242 (331)
Q Consensus       234 e~N~f~~~~  242 (331)
                      |+...++..
T Consensus       247 ~ni~~~~V~  255 (336)
T d1nhca_         247 SNIQLSGIT  255 (336)
T ss_dssp             EEEEEEEES
T ss_pred             EeEEEeccc
Confidence            666665543

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.65  E-value=0.0015  Score=61.99  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec----CCCCeeeeecCCceEEEeccEEeccCceeee
Q 020121           97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  172 (331)
Q Consensus        97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~li  172 (331)
                      |++.+++|+.|++|+++....   -.|.+. ++++|.|+++++..    ..||+ |+.  +.+|+|++|.|...+-+.-+
T Consensus       130 l~~~~~~n~~i~git~~nsp~---~~i~i~-~c~~v~i~nv~I~~~~~~NtDGI-di~--~snv~I~n~~i~~gDDcIai  202 (422)
T d1rmga_         130 LRLTDVTHFSVHDIILVDAPA---FHFTMD-TCSDGEVYNMAIRGGNEGGLDGI-DVW--GSNIWVHDVEVTNKDECVTV  202 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECCSS---CSEEEE-EEEEEEEEEEEEECCSSTTCCSE-EEE--EEEEEEEEEEEESSSEEEEE
T ss_pred             EEEEeeeeeEEECcEecCCCc---eEEEEe-ccccEEEEeeEEcCCCCCccceE-eec--ccEEEEEeeEEEcCCCcccc
Confidence            788899999999999998643   358886 78999999999964    34775 784  34899999999987777666


Q ss_pred             cCCCCCCCCcceEEEEeceeecCCC-------CCCcccccCeEEEEcceEecc
Q 020121          173 GADPSHVGDRCIRVTIHHCLFDGTR-------QRHPRLRFGKVHLYNNYTRNW  218 (331)
Q Consensus       173 G~~~~~~~d~~~~vT~hhN~f~~~~-------~R~Pr~r~G~~hv~NN~~~n~  218 (331)
                      .+..       .+|++.++++....       .+.+.++  .+++.|.++.+.
T Consensus       203 ks~s-------~nI~i~n~~c~~g~GisiGs~g~~~~V~--nV~v~n~~~~~s  246 (422)
T d1rmga_         203 KSPA-------NNILVESIYCNWSGGCAMGSLGADTDVT--DIVYRNVYTWSS  246 (422)
T ss_dssp             EEEE-------EEEEEEEEEEESSSEEEEEEECTTEEEE--EEEEEEEEEESS
T ss_pred             CCCC-------ccEEEEeeEEccccceeEeeccCCCCEE--EEEEEeEEEeCC
Confidence            5421       25777665554321       1112121  356667666654

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=97.36  E-value=0.00045  Score=63.78  Aligned_cols=93  Identities=17%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             EEEeeec-cEEEeeeEEecCC------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCce
Q 020121           97 LRLKECE-HVIICNLEFEGGR------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT  169 (331)
Q Consensus        97 i~i~~~~-NVIIrnL~i~~g~------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~  169 (331)
                      +.+..++ ||.|+||+|....      ....|||.+.  +++|+|.+|.+..+.| .+.++. +.+|+|++|.+..- -+
T Consensus       120 ~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi~--s~nV~I~n~~i~~gDD-cIaik~-g~ni~i~n~~c~~g-hG  194 (333)
T d1k5ca_         120 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS--ANNVTIQNCIVKNQDD-CIAIND-GNNIRFENNQCSGG-HG  194 (333)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEEE--CSSEEEESCEEESSSC-SEEEEE-EEEEEEESCEEESS-CC
T ss_pred             EEEecccCcEEEEeEEEEeeecCCCccCCCcceEeEe--cceEEEEecEEecCCC-EEEEcC-ccEEEEEEEEECCC-Cc
Confidence            3444343 7888888887532      2356999994  6899999999988766 567864 67999999999742 26


Q ss_pred             eeecCCCCCCCCcceEEEEeceeecCC
Q 020121          170 MLIGADPSHVGDRCIRVTIHHCLFDGT  196 (331)
Q Consensus       170 ~liG~~~~~~~d~~~~vT~hhN~f~~~  196 (331)
                      +-||+....  ..--+|++.++.|.+.
T Consensus       195 isiGS~g~~--~~V~nV~v~n~~~~~t  219 (333)
T d1k5ca_         195 ISIGSIATG--KHVSNVVIKGNTVTRS  219 (333)
T ss_dssp             EEEEEECTT--CEEEEEEEESCEEEEE
T ss_pred             eeeecccCC--CcEEEEEEEEeEEeCC
Confidence            677763211  1124889999988764

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.34  E-value=0.0021  Score=59.50  Aligned_cols=138  Identities=14%  Similarity=0.179  Sum_probs=90.4

Q ss_pred             CCceEEcCCCceEEEeeeeeecC-------CCCeeeeecCCceEEEeccEEeccCceee-ecCCCCCCCCcceEEEEece
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRDY-------DDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRVTIHHC  191 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~~-------~Dg~~di~~~s~~vTiS~n~f~~h~k~~l-iG~~~~~~~d~~~~vT~hhN  191 (331)
                      +-++.+..+++||+|-|..|...       .|. |.+ .++++|-|-+|.|+......+ .+...      .-+||+.+|
T Consensus       123 g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da-I~i-~~s~nVwIDH~s~s~~~d~~~~~~~~~------s~~vTis~~  194 (359)
T d1idka_         123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTSA------DNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCCT------TCEEEEESC
T ss_pred             cCceEEEecCceEEEECcEEecCCCCCCCCCCe-EEe-eCCccEEEEeeeeccCCCCceeeeccC------CCceeeece
Confidence            34666644689999999999753       355 477 478999999999975333222 22211      127999999


Q ss_pred             eecCCCCCCcccc----------c--CeEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeeeeeccccCccc
Q 020121          192 LFDGTRQRHPRLR----------F--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  259 (331)
Q Consensus       192 ~f~~~~~R~Pr~r----------~--G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~  259 (331)
                      +|...........          .  ..+.+.+|||.+...+.-..+.+.++-+.+|||.+...-..           ..
T Consensus       195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g~~~hv~NN~~~n~~~~~i-----------~~  263 (359)
T d1idka_         195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAF-----------EI  263 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEEE-----------EE
T ss_pred             eeeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceecccceEEEECcEEECccceEE-----------ec
Confidence            9976655543321          1  25779999999887666666767778888999986432110           01


Q ss_pred             cCccEEEEcCCeEEcCc
Q 020121          260 AKSGLIRSEGDIFLKGA  276 (331)
Q Consensus       260 ~~~g~~~~~~n~~~ng~  276 (331)
                      .....+..++|.|.+..
T Consensus       264 ~~~~~i~~e~N~F~~~~  280 (359)
T d1idka_         264 GEGGYVLAEGNVFQNVD  280 (359)
T ss_dssp             CTTCEEEEESCEEEEEE
T ss_pred             CCceeEEEeceEEeCCc
Confidence            12335667788887643

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.29  E-value=0.0023  Score=59.03  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=77.7

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeee------cCCceEEEeccEEeccC
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT------RQSTDITVSRCYFTQHD  167 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~------~~s~~vTiS~n~f~~h~  167 (331)
                      +.+|.+.+++||+|.|..|...   .+..|.+..++++|=|.+|.|+.....++.-.      .+..+||+-+|.|.++.
T Consensus       150 gDai~i~~s~nvwIDH~s~s~~---~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~  226 (346)
T d1pxza_         150 GDAITMRNVTNAWIDHNSLSDC---SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNA  226 (346)
T ss_dssp             CCSEEEESCEEEEEESCEEECC---SSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSE
T ss_pred             CceeeeecCceEEEECcEeecc---ccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCc
Confidence            4678998999999999999954   23456675578999999999976433322111      12246999999997542


Q ss_pred             c-ee-eecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEecc
Q 020121          168 K-TM-LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW  218 (331)
Q Consensus       168 k-~~-liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~  218 (331)
                      . .+ +...         -.+.+.+|+|.+.....=..+. +++.+.||||.+.
T Consensus       227 ~r~~p~~r~---------g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~  271 (346)
T d1pxza_         227 GQRMPRARY---------GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP  271 (346)
T ss_dssp             EECTTEEES---------SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECC
T ss_pred             ccCCCcccc---------ceEEEECcEeecCccEEEeccCceEEEEEeeEEECC
Confidence            1 11 1111         1577889999987766545544 5789999999874

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=97.15  E-value=0.0018  Score=59.85  Aligned_cols=216  Identities=13%  Similarity=0.044  Sum_probs=124.6

Q ss_pred             CCcccccCCCCCCCCCceEEecCCCCCCCchHHHHhh-c---CCCeEEEEEeeeEEEeC--------ceeEec--cceee
Q 020121           18 GQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCR-R---REPLWIVFEVSGTIHLS--------SYLSVS--SYKTI   83 (331)
Q Consensus        18 ~~a~Gfg~~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~-~---~~pr~Ivf~v~G~I~l~--------~~l~v~--sn~TI   83 (331)
                      ....+.++.++||+.+.+++|+.+.|...+....-+. +   ......+..+...|.+.        -.|.+.  +|+.|
T Consensus        36 ~~~~~~g~~~~gg~~~~vi~~~G~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~i~G~~~~~~~~gl~i~~~~nVii  115 (353)
T d1o88a_          36 ARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVV  115 (353)
T ss_dssp             TTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTTGGGSTTSCCCEEEEESBCSCEEEEECTTCCBSSEEEEESCCSEEE
T ss_pred             cccccccceecCCCeEEEEEEeeeeecccCcccccccccccccccCcEEEecCCCEEEEcCCCccccceEEEeccceEEE
Confidence            3466788889999999999999988742222222111 1   11111122222222221        123332  44444


Q ss_pred             eee----ccceEEecCcEEEeeeccEEEeeeEEecCCC---------CCCCc-eEEcCCCceEEEeeeeeecCCCCeeee
Q 020121           84 DGR----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG---------HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDI  149 (331)
Q Consensus        84 ~G~----g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~---------~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di  149 (331)
                      -..    +..-...+.+|.+.+++||+|.|.+|..+..         .-.|+ +.+...+.+|=|-.|.|.....+.+..
T Consensus       116 rnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g  195 (353)
T d1o88a_         116 QNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDG  195 (353)
T ss_dssp             ESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEEEEEEECCEES
T ss_pred             eCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcccccccccceeC
Confidence            432    1111112467999999999999999986431         01233 344446677777777776544444332


Q ss_pred             e---cCCceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccce--
Q 020121          150 T---RQSTDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYA--  222 (331)
Q Consensus       150 ~---~~s~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~--  222 (331)
                      .   ...++||+.+|+|.++.. .=++...         .+-+.+|+|.+.....-..+. +.+.+.||||.+...-.  
T Consensus       196 ~~~~~~~~~vT~hhN~~~~~~~R~P~~~~g---------~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~p~~~  266 (353)
T d1o88a_         196 SSSSDTGRNITYHHNYYNDVNARLPLQRGG---------LVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTS  266 (353)
T ss_dssp             SSSSCCCCEEEEESCEEEEEEECSCEEESS---------EEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEE
T ss_pred             CccCcCCceEEEEeeEEcCCccCCcceecc---------eEEEEEEEEecccceEEecCCCceEEEEeeEEecccCCccc
Confidence            1   124589999999986431 1122211         466789999887766555554 47899999999754211  


Q ss_pred             -eeeccCceEEEEceEEecCC
Q 020121          223 -VCASVESQIYSQCNIYEAGQ  242 (331)
Q Consensus       223 -~~~~~~a~v~~e~N~f~~~~  242 (331)
                       ........+..++|+|....
T Consensus       267 ~~~~~~~g~~~~~~n~~~~~~  287 (353)
T d1o88a_         267 RYDGKNFGTWVLKGNNITKPA  287 (353)
T ss_dssp             CSSSSSCCEEEEESCSCCSTT
T ss_pred             cccCCcceeEEECCCeeeccc
Confidence             12234456778888887654

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.04  E-value=0.023  Score=50.76  Aligned_cols=127  Identities=11%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             CCCceEEecC-CCCCC-------CchHHHHhhcCCCeEEEEEeeeEEEeC------ceeEec------cceeeeeeccce
Q 020121           31 LHGPVYFVTN-LSDDG-------PGSLREGCRRREPLWIVFEVSGTIHLS------SYLSVS------SYKTIDGRGQRI   90 (331)
Q Consensus        31 ~gg~vv~Vt~-l~d~g-------~GsLr~ai~~~~pr~Ivf~v~G~I~l~------~~l~v~------sn~TI~G~g~g~   90 (331)
                      .-+++++|.. -+|++       ..+|++|++...|...|+=-.|+-...      ..+.+.      ..+||.+.+.+.
T Consensus        12 ~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~~i~i~~~~~~~   91 (400)
T d1ru4a_          12 STKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGR   91 (400)
T ss_dssp             CCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCC
T ss_pred             ccCCeEEECCCCcCCCCCCccccHHHHHHHHHhCCCcCEEEEcCceeecceeecCceEEEEecCCCCCCeEEEecCCCCe
Confidence            3468999974 34433       368999999877765443234664432      112221      235666664432


Q ss_pred             -EEecC-----------cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEE
Q 020121           91 -KLTGK-----------GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITV  158 (331)
Q Consensus        91 -~i~G~-----------gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTi  158 (331)
                       .|.+.           .+.+. .++++|+++.++...   ..++.+.  ..++-|++|.|.+.....+.+........+
T Consensus        92 ~vi~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~---~~~~~~~--~~~~~i~n~~i~~~~~~g~~~~~~~~~~~~  165 (400)
T d1ru4a_          92 AVFDFSFPDSQWVQASYGFYVT-GDYWYFKGVEVTRAG---YQGAYVI--GSHNTFENTAFHHNRNTGLEINNGGSYNTV  165 (400)
T ss_dssp             EEEECCCCTTCCCTTCCSEEEC-SSCEEEESEEEESCS---SCSEEEC--SSSCEEESCEEESCSSCSEEECTTCCSCEE
T ss_pred             eEEeCCccccccccccceEEEe-cCcEEEecceeecCc---ceeeeec--ccccccccceEecCCcceEEEeccccccEE
Confidence             33322           24554 688999999998652   2334443  345556677776655444444333334444


Q ss_pred             eccEE
Q 020121          159 SRCYF  163 (331)
Q Consensus       159 S~n~f  163 (331)
                      .+|.+
T Consensus       166 ~~~~~  170 (400)
T d1ru4a_         166 INSDA  170 (400)
T ss_dssp             ESCEE
T ss_pred             EEeeE
Confidence            44443

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=96.91  E-value=0.0075  Score=55.78  Aligned_cols=140  Identities=16%  Similarity=0.229  Sum_probs=88.9

Q ss_pred             CCceEEcCCCceEEEeeeeeecCC------CCeeeeecCCceEEEeccEEecc-CceeeecCCCCCCCCcceEEEEecee
Q 020121          120 VDGIQIKPNSRHIWIDRCSLRDYD------DGLIDITRQSTDITVSRCYFTQH-DKTMLIGADPSHVGDRCIRVTIHHCL  192 (331)
Q Consensus       120 ~D~I~i~~~~~nVwIDHcs~s~~~------Dg~~di~~~s~~vTiS~n~f~~h-~k~~liG~~~~~~~d~~~~vT~hhN~  192 (331)
                      +.++.+..+++||+|-|..|....      +..|.+ .++++|=|=+|.|+.- +..++....      ..-.||+..|+
T Consensus       123 g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i-~~s~nvwIDH~s~s~~~d~~~~~~~~------~s~~vTvs~~~  195 (359)
T d1qcxa_         123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITV-DDSDLVWIDHVTTARIGRQHIVLGTS------ADNRVTISYSL  195 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEE-ESCCCEEEESCEEEEESSCSEEECSS------CCEEEEEESCE
T ss_pred             ccceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEe-eCCCCEEEEeeeccccCCCceEeecc------CCCceEeeccE
Confidence            345655447899999999997532      223466 4688899999988732 222322211      12379999999


Q ss_pred             ecCCCCCCccc----------ccC--eEEEEcceEeccccceeeeccCceEEEEceEEecCCcceeeeeeeccccCcccc
Q 020121          193 FDGTRQRHPRL----------RFG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA  260 (331)
Q Consensus       193 f~~~~~R~Pr~----------r~G--~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~~~~~~~~~~~~~~~~~  260 (331)
                      |..........          ..+  ++.+.+|+|.+...+.-..+.+..+.+.+|||.+.....    +       ...
T Consensus       196 f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~~~~~----~-------~~~  264 (359)
T d1qcxa_         196 IDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHA----F-------EIG  264 (359)
T ss_dssp             EECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEE----E-------EEC
T ss_pred             eccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCcCCEE----E-------ecC
Confidence            97765543222          112  478999999987766555666666788899998743211    0       112


Q ss_pred             CccEEEEcCCeEEcCcc
Q 020121          261 KSGLIRSEGDIFLKGAQ  277 (331)
Q Consensus       261 ~~g~~~~~~n~~~ng~~  277 (331)
                      ..+.+..++|.|.++..
T Consensus       265 ~~~~v~~e~N~F~~~~~  281 (359)
T d1qcxa_         265 TGGYVLAEGNVFQDVNV  281 (359)
T ss_dssp             TTEEEEEESCEEEEEEE
T ss_pred             CceEEEEEeeEEECCCC
Confidence            34456678888887543

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=96.83  E-value=0.0029  Score=58.71  Aligned_cols=79  Identities=14%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             cceeeeeeccceEEecC---cEEEeeeccEEEeeeEEec--CCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCC
Q 020121           79 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEG--GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS  153 (331)
Q Consensus        79 sn~TI~G~g~g~~i~G~---gi~i~~~~NVIIrnL~i~~--g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s  153 (331)
                      .|.+|.|    ++|...   .+.+..++||.+++++++.  ......|||.+   +++|+|++|.+.-+.|. +.++  +
T Consensus       132 ~n~~i~g----iti~~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~---~~~~~i~~~~~~~gDD~-i~~~--s  201 (373)
T d1ogmx2         132 QTWYCVG----PTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI---YPNSVVHDVFWHVNDDA-IKIY--Y  201 (373)
T ss_dssp             EEEEEES----CEEECCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC---CTTCEEEEEEEEESSCS-EECC--S
T ss_pred             eEEEEeC----EEEECCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec---cCCEEEEeeEEecCCCE-EEec--C
Confidence            4566665    455543   4677789999999999974  23345788766   56899999999865555 4674  6


Q ss_pred             ceEEEeccEEeccC
Q 020121          154 TDITVSRCYFTQHD  167 (331)
Q Consensus       154 ~~vTiS~n~f~~h~  167 (331)
                      .+++|++|.+....
T Consensus       202 ~~i~v~n~~~~~~~  215 (373)
T d1ogmx2         202 SGASVSRATIWKCH  215 (373)
T ss_dssp             TTCEEEEEEEEECS
T ss_pred             CCEEEEEEEEECCC
Confidence            79999999997543

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=96.66  E-value=0.059  Score=49.28  Aligned_cols=151  Identities=19%  Similarity=0.122  Sum_probs=82.7

Q ss_pred             CceEEcCCCceEEEeeeeeecCCC---------------CeeeeecCCceEEEeccEEeccC-ceeeecC-C--CCCCCC
Q 020121          121 DGIQIKPNSRHIWIDRCSLRDYDD---------------GLIDITRQSTDITVSRCYFTQHD-KTMLIGA-D--PSHVGD  181 (331)
Q Consensus       121 D~I~i~~~~~nVwIDHcs~s~~~D---------------g~~di~~~s~~vTiS~n~f~~h~-k~~liG~-~--~~~~~d  181 (331)
                      -+|.|. +++||+|-|..|....|               ..+.+ ..+++|-|=+|.|+... ..+-+.. .  .....|
T Consensus        96 ~gl~i~-~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~-~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~d  173 (355)
T d1pcla_          96 GSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHD  173 (355)
T ss_pred             CEEEEE-ccccEEEEeeEeecCcccCCccccCCCcCccCceEEe-cCCccEEEECcccccCccccccccccccccccccc
Confidence            467775 78999999999975332               12344 24667667777665311 1110100 0  000011


Q ss_pred             -------cceEEEEeceeecCCCCCCcc--------cccC--eEEEEcceEeccccceeeeccCceEEEEceEEecCCcc
Q 020121          182 -------RCIRVTIHHCLFDGTRQRHPR--------LRFG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKK  244 (331)
Q Consensus       182 -------~~~~vT~hhN~f~~~~~R~Pr--------~r~G--~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~~  244 (331)
                             ....||+.+|+|.++..-+.-        ...+  .+.+.+|||.+...+.=..+. .++-+.+|||.+....
T Consensus       174 g~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~-G~~hv~NN~~~n~~~~  252 (355)
T d1pcla_         174 GALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF-GSIHAYNNVYLGDVKH  252 (355)
T ss_pred             ceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCcccc-cEEEEECcEEECCCCc
Confidence                   123799999999774332211        1112  467889999987655433332 3577789999876543


Q ss_pred             eeeeeeeccccCccccCccEEEEcCCeEEcCccc
Q 020121          245 RTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQA  278 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~  278 (331)
                      .....+..    ......+.+..++|.|.++..+
T Consensus       253 ~~~~~~y~----~~~~~~~~v~~e~NyF~~~~~~  282 (355)
T d1pcla_         253 SVYPYLYS----FGLGTSGSILSESNSFTLSNLK  282 (355)
T ss_pred             ccccceee----eccCcCceEEEeCCEEECCCCc
Confidence            21111111    1122455677889999876543

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=96.64  E-value=0.12  Score=46.58  Aligned_cols=111  Identities=14%  Similarity=0.269  Sum_probs=75.9

Q ss_pred             chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-------------cEEEeeeccE
Q 020121           47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKECEHV  105 (331)
Q Consensus        47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-------------gi~i~~~~NV  105 (331)
                      -++++||++    ...|++++=..|+-+  +.|.|.   +++||+|.|..-+ |...             .+.+. ++++
T Consensus        20 ~TIq~AIda~p~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~~v~-~~~f   96 (319)
T d1gq8a_          20 KTVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGF   96 (319)
T ss_dssp             SSHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTC
T ss_pred             cCHHHHHhhCccCCCCcEEEEEcCceEE--EEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccceeee-cCCe
Confidence            467888865    234544443467654  567773   6899999986443 3322             25554 7899


Q ss_pred             EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121          106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  165 (331)
Q Consensus       106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~  165 (331)
                      +++||+|++..+   ...-|+.+.  ++++.+.+|.|.-..|-|++-+   ..--..+|.|..
T Consensus        97 ~a~nitf~Nt~g~~~~QAvAl~v~--gd~~~fy~c~f~G~QDTL~~~~---gr~yf~~c~IeG  154 (319)
T d1gq8a_          97 LARDITFQNTAGAAKHQAVALRVG--SDLSAFYRCDILAYQDSLYVHS---NRQFFINCFIAG  154 (319)
T ss_dssp             EEEEEEEEECCCGGGCCCCSEEEC--CTTEEEEEEEEECSTTCEEECS---SEEEEESCEEEE
T ss_pred             EEEeeEEEeCCCCCCCcEEEEEec--CcceEEEcceecccCCeeEECC---CCEEEEeeEEEe
Confidence            999999997532   345677775  5679999999999999987542   345567777764

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.60  E-value=0.019  Score=53.68  Aligned_cols=117  Identities=15%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             cCcEEEeeeccEEEeeeEEecCCC--------------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeec-------C
Q 020121           94 GKGLRLKECEHVIICNLEFEGGRG--------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR-------Q  152 (331)
Q Consensus        94 G~gi~i~~~~NVIIrnL~i~~g~~--------------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~-------~  152 (331)
                      +..|.|.+++||+|.|..|..+..              .-+..|.|..++++|=|-+|-|......+|.-..       +
T Consensus       183 ~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g  262 (399)
T d1bn8a_         183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTT
T ss_pred             CceEEEecCccEEEECceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccC
Confidence            567888889999999999986531              0133556666788999999998765444432211       1


Q ss_pred             CceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCC--cc-----ccc-CeEEEEcceEeccc
Q 020121          153 STDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--PR-----LRF-GKVHLYNNYTRNWG  219 (331)
Q Consensus       153 s~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--Pr-----~r~-G~~hv~NN~~~n~~  219 (331)
                      ...||+-+|+|.+... .=++..         -++-+.+|+|.+.....  |.     .+. +++.+.||||.+..
T Consensus       263 ~~~vT~hhN~f~~~~~R~Prvr~---------g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~EgN~F~~~~  329 (399)
T d1bn8a_         263 KLKITLHHNRYKNIVQRAPRVRF---------GQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPG  329 (399)
T ss_dssp             CCCEEEESCEEEEEEECSSEESS---------CEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTT
T ss_pred             CceEEEEeeEecCccccCccccc---------cEEEEEccEeECCCcccccccceeeccccCceEEEEeeEEECCC
Confidence            2379999999986421 111211         14567789998765421  11     122 57889999998753

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=96.59  E-value=0.0052  Score=56.29  Aligned_cols=72  Identities=13%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCe--eeeec----CCceEEEeccEEeccCc
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL--IDITR----QSTDITVSRCYFTQHDK  168 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~--~di~~----~s~~vTiS~n~f~~h~k  168 (331)
                      +||.+..++||.|+|-.|+.    .+|+|.+. .+++|+|.+|.+.... |+  ..+..    .-.+|++++|.|.+...
T Consensus       153 DGidi~~s~nV~I~n~~i~t----gDDcIaik-s~~ni~i~n~~c~~~h-G~sigslG~~~~~~v~nV~v~n~~i~~t~~  226 (335)
T d1czfa_         153 DAFDVGNSVGVNIIKPWVHN----QDDCLAVN-SGENIWFTGGTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSEN  226 (335)
T ss_dssp             CSEEECSCEEEEEESCEEEC----SSCSEEES-SEEEEEEESCEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEecCCCeEEEEeeEEec----CCceEEec-CceEEEEEEEEEECCC-CccccccCCCCcCCEeEEEEEeeEEECCCc
Confidence            57888778888888888885    47999997 6789999999886533 32  12221    13699999999998766


Q ss_pred             eeee
Q 020121          169 TMLI  172 (331)
Q Consensus       169 ~~li  172 (331)
                      +..|
T Consensus       227 g~rI  230 (335)
T d1czfa_         227 AVRI  230 (335)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            6555

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=96.24  E-value=0.028  Score=51.89  Aligned_cols=118  Identities=13%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             CCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEecee
Q 020121          118 HDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCL  192 (331)
Q Consensus       118 ~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~  192 (331)
                      .....+.+. .+++|.|+++.+..     ..||+ |+ ..+.+|+|++|.|...+-+..+.+....  ....+|++.+|.
T Consensus       172 s~~~~~~~~-~~~~v~i~n~~I~~~~~~~NtDGi-di-~~s~nv~I~n~~i~~gDD~i~~ks~~~~--~~~~ni~i~n~~  246 (376)
T d1bhea_         172 SPNFHVVFS-DGDGFTAWKTTIKTPSTARNTDGI-DP-MSSKNITIAYSNIATGDDNVAIKAYKGR--AETRNISILHND  246 (376)
T ss_dssp             CSSCSEEEE-SCEEEEEEEEEEECCTTCSSCCSE-EE-ESCEEEEEESCEEECSSCSEEEEECTTS--CCEEEEEEEEEE
T ss_pred             CCceEEEEe-CCceEEEEeEeccCCccCCCccee-ec-cccceEEEEeceeecCCCceeeecccCC--CCcceEEEEeeE
Confidence            345677775 68889999988863     35775 88 4788999999999877665555322110  112378888888


Q ss_pred             ecCCCCCCcccc---cC--eEEEEcceEeccccceeee--cc--Cc---eEEEEceEEecCCc
Q 020121          193 FDGTRQRHPRLR---FG--KVHLYNNYTRNWGIYAVCA--SV--ES---QIYSQCNIYEAGQK  243 (331)
Q Consensus       193 f~~~~~R~Pr~r---~G--~~hv~NN~~~n~~~~~~~~--~~--~a---~v~~e~N~f~~~~~  243 (331)
                      |....  .-.+.   .+  .+++.|+.+++.. +++..  ..  ++   +|.+|+..+++...
T Consensus       247 ~~~~~--g~~iGs~~~~v~nv~i~n~~~~~~~-~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~  306 (376)
T d1bhea_         247 FGTGH--GMSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNVVMKNVAK  306 (376)
T ss_dssp             ECSSS--CEEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEEEEESCSE
T ss_pred             EecCC--CceeccccCCEEEEEEEeeeEcCCC-ceEEEEecCCCccEEEEEEEEeEEEeccCc
Confidence            76532  11111   11  4678888887653 35432  11  11   35556555555543

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.24  E-value=0.11  Score=47.42  Aligned_cols=121  Identities=11%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             CchHHHHhhc----CCCeEEEEEeeeEEEeCceeEec-cceeeeeeccceEE-ecC-------------------cEEEe
Q 020121           46 PGSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQRIKL-TGK-------------------GLRLK  100 (331)
Q Consensus        46 ~GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g~~i-~G~-------------------gi~i~  100 (331)
                      .-++++||+.    ..|++ ||=..|+-+  +.|.|. +++||+|++..-++ .+.                   .+.+.
T Consensus        18 f~TIq~AI~a~p~~~~~~v-I~I~~G~Y~--E~V~I~k~~itl~G~~~~~tiI~~~~~~~~~~~~~~~~~t~~sat~~v~   94 (342)
T d1qjva_          18 FKTIADAIASAPAGSTPFV-ILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS   94 (342)
T ss_dssp             BSSHHHHHHTSCSSSSCEE-EEECSEEEC--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC
T ss_pred             chhHHHHHHhCccCCceEE-EEEcCeEEE--EEEEEcCCCeEEEEcCCCCcEEEecccccccccCCCcccccceeeEEEe
Confidence            4568899875    34554 333456544  557775 68999999754333 321                   25554


Q ss_pred             eeccEEEeeeEEecCC-----------------CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEE
Q 020121          101 ECEHVIICNLEFEGGR-----------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF  163 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~-----------------~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f  163 (331)
                       +++++++||+|+...                 ....-||.+...++++-+-+|.|.-..|-|++-.   ..--+.+|.|
T Consensus        95 -a~~f~a~nitf~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~~~gD~~~fy~C~f~G~QDTL~~~~---gr~y~~~c~I  170 (342)
T d1qjva_          95 -AKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSG---GRSFFSDCRI  170 (342)
T ss_dssp             -SSSCEEEEEEEEECCCHHHHHTSCTTCTTCCSCCCCCSEEECTTCCSEEEEEEEEECSTTCEEECS---SEEEEESCEE
T ss_pred             -eCCeEEEeeEEecCCccccccccccccccccCCCceEEEEeecCCCceeEEeeeeccccceeEeCC---CCEEEEeeEE
Confidence             899999999999742                 1234577774356788899999999999887542   3445677777


Q ss_pred             eccCceeeecC
Q 020121          164 TQHDKTMLIGA  174 (331)
Q Consensus       164 ~~h~k~~liG~  174 (331)
                      ... -=.++|.
T Consensus       171 eG~-vDFIfG~  180 (342)
T d1qjva_         171 SGT-VDFIFGD  180 (342)
T ss_dssp             EES-EEEEEES
T ss_pred             ecc-CcEEecC
Confidence            643 2345554

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=96.16  E-value=0.0056  Score=57.68  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=24.6

Q ss_pred             eeccEEEeeeEEecCCCCCCC------ceEEcCCCceEEEeeeeeec
Q 020121          101 ECEHVIICNLEFEGGRGHDVD------GIQIKPNSRHIWIDRCSLRD  141 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~~~~D------~I~i~~~~~nVwIDHcs~s~  141 (331)
                      .++++.|.+..|+.....+.+      ++... .+++.+|+||.|..
T Consensus        99 ~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~-~~~n~~I~~n~~~~  144 (481)
T d1ofla_          99 YGSYNRITACVFDCFDEANSAYITTSLTEDGK-VPQHCRIDHCSFTD  144 (481)
T ss_dssp             CSSSCEEESCEEESCCSSCSCSEEECCCTTCC-CCCSCEEESCEEEC
T ss_pred             EeecceEeeeEeecccccccceeccceeEEEe-eccceEEECceEec
Confidence            467778888888865432212      22222 45678888888864

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=95.98  E-value=0.029  Score=51.68  Aligned_cols=119  Identities=15%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             EEecCcEEEe-eeccEEEeeeEEecCCCC-------------CCCc-eEEcCCCceEEEeeeeeecCCCCeeeee-----
Q 020121           91 KLTGKGLRLK-ECEHVIICNLEFEGGRGH-------------DVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDIT-----  150 (331)
Q Consensus        91 ~i~G~gi~i~-~~~NVIIrnL~i~~g~~~-------------~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~-----  150 (331)
                      ...++.|.+. +++||+|.|..|..+...             ..|+ +.+..++++|=|.+|-|.+....+|.-.     
T Consensus       140 ~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~  219 (361)
T d1pe9a_         140 NAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNG  219 (361)
T ss_dssp             ECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCH
T ss_pred             ccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeecCccceEecCCcccCCCcceEeccCCCCc
Confidence            3445678886 489999999999865310             1243 4565568899999999976544443321     


Q ss_pred             ---cCCceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCC--cc-----cc-cCeEEEEcceEecc
Q 020121          151 ---RQSTDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--PR-----LR-FGKVHLYNNYTRNW  218 (331)
Q Consensus       151 ---~~s~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--Pr-----~r-~G~~hv~NN~~~n~  218 (331)
                         .+..+||+-+|+|.++.. .=++...         .+-+.+|+|.+...+.  +.     .+ .+.+.+.||||.+-
T Consensus       220 ~~d~g~~~vT~hhN~~~~~~~R~P~~r~G---------~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~  290 (361)
T d1pe9a_         220 SQDKGKLHVTLFNNVFNRVTERAPRVRYG---------SIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             HHHTTCCEEEEESCEEEEEEECSSEESSC---------EEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEE
T ss_pred             cccCCcceEEEECccccCCcCcCCCeeCc---------eEEEECceeecCcCccccccceeeecCCCCEEEEEceEEECC
Confidence               223589999999986321 1122111         3556799998765421  11     12 24688999999853

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=95.70  E-value=0.022  Score=52.09  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=56.3

Q ss_pred             CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeee---c-C-CceEEEeccEEeccCce
Q 020121           95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT---R-Q-STDITVSRCYFTQHDKT  169 (331)
Q Consensus        95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~---~-~-s~~vTiS~n~f~~h~k~  169 (331)
                      +||.+. ++||.|+|-.|+.    .+|+|.|. .++||+|++|.+..+. |+ .+.   . + ..+|++++|.|.+...+
T Consensus       151 DGidi~-s~nV~I~n~~i~~----gDDcIaik-~g~ni~i~n~~c~~gh-Gi-siGS~g~~~~V~nV~v~n~~~~~t~~G  222 (333)
T d1k5ca_         151 DGFDVS-ANNVTIQNCIVKN----QDDCIAIN-DGNNIRFENNQCSGGH-GI-SIGSIATGKHVSNVVIKGNTVTRSMYG  222 (333)
T ss_dssp             CSEEEE-CSSEEEESCEEES----SSCSEEEE-EEEEEEEESCEEESSC-CE-EEEEECTTCEEEEEEEESCEEEEEEEE
T ss_pred             ceEeEe-cceEEEEecEEec----CCCEEEEc-CccEEEEEEEEECCCC-ce-eeecccCCCcEEEEEEEEeEEeCCcEE
Confidence            789995 8999999999996    46999997 6789999999998775 53 442   1 2 36999999999987766


Q ss_pred             eee
Q 020121          170 MLI  172 (331)
Q Consensus       170 ~li  172 (331)
                      .-|
T Consensus       223 ~rI  225 (333)
T d1k5ca_         223 VRI  225 (333)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=95.38  E-value=0.063  Score=49.29  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             EEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec------CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121           98 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD------YDDGLIDITRQSTDITVSRCYFTQHDKTML  171 (331)
Q Consensus        98 ~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~------~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l  171 (331)
                      .+.+++|+.|++|++++...   =.+.+. .+++|-++++.+..      ..||. |+   +.+++|++|.|...+-+.-
T Consensus       127 ~~~~~~n~~i~giti~~s~~---~~~~~~-~~~~v~i~~~~i~~~~~~~~n~dgi-~~---~~~~~i~~~~~~~gDD~i~  198 (373)
T d1ogmx2         127 NLGGGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDGP-EI---YPNSVVHDVFWHVNDDAIK  198 (373)
T ss_dssp             CCCSSEEEEEESCEEECCSS---CCEEEC-SSSCEEEEEEEEEEECCCSTTCCCC-BC---CTTCEEEEEEEEESSCSEE
T ss_pred             EEEcceEEEEeCEEEECCCe---eEEEEc-cCCeEEEEEEEEEecCCCCCCCeee-ec---cCCEEEEeeEEecCCCEEE
Confidence            45578999999999998643   346675 78899888888852      35764 55   5689999999998777777


Q ss_pred             ecCC
Q 020121          172 IGAD  175 (331)
Q Consensus       172 iG~~  175 (331)
                      ++++
T Consensus       199 ~~s~  202 (373)
T d1ogmx2         199 IYYS  202 (373)
T ss_dssp             CCST
T ss_pred             ecCC
Confidence            7654

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.18  E-value=2.6  Score=36.48  Aligned_cols=37  Identities=16%  Similarity=0.114  Sum_probs=21.2

Q ss_pred             eeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeee
Q 020121          101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR  140 (331)
Q Consensus       101 ~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s  140 (331)
                      ..++.+|+|..|+...   ..++.+.......++.+|.+.
T Consensus       135 ~~~~~~i~n~~i~~~~---~~g~~~~~~~~~~~~~~~~~~  171 (400)
T d1ru4a_         135 IGSHNTFENTAFHHNR---NTGLEINNGGSYNTVINSDAY  171 (400)
T ss_dssp             CSSSCEEESCEEESCS---SCSEEECTTCCSCEEESCEEE
T ss_pred             cccccccccceEecCC---cceEEEeccccccEEEEeeEE
Confidence            3678888999988642   234444323344455555554