Citrus Sinensis ID: 020122

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-

MALEASIDRRNHAQSATTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR

ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccEEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEccc

cccccccccccccccccccccccccccHHHHcccccccccccccccHHHccccHHHHHHHHHHccHHHHHHcHHHHccHHHHHHHHccccHHccHHcccHHHHHHHHHHcccccHHHHcccHHHcccHHHHHHHcHcHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccEEHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHcEEEEEEcccccccccccccccEEEEEEEEccccccccEEEccEEEccEEcccccccccEEEEccccEEEEccccccccccccccccEEEEEEEEcc

MALEASIDRrnhaqsattngavvlppasyrlrlnpssehkpdsyddlhqleftPLLFSslerylpptmlsmsrdVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELftmhapsvlVPAFVKAVRDNTEASFRSimaepipgiytfemLQPRFCEMLLSEVENFERWVHDtrfrimrpntmnkfgavlddFGLETMLDKLMNDFirpiskvffpevggstldshhGFVVEygmdrdvelgfhvddseVTLNVClgrefsggelffrgvrcdkhvntetqseeildyshvpgyavlhrgrhrhgarattsgsRVNLLVWCRR

maleasidrrnhaqsattngavvlppASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERylpptmlsmsrdvKFQYMRDILMkysrdgertrvqrhKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFrsimaepipgIYTFEMLQPRFCEMLLSEVENFERWVHDTrfrimrpntmnKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTEtqseeildyshVPGYAVLHRGrhrhgarattsgsrvnllvwcrr

**********************************************LHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDG**TRVQRHKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWC**

**************************************HKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYS***************QRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTR**I**PNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR

**************SATTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR************GSRVNLLVWCRR

***************************SYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		331	2.2.26 [Sep-21-2011]
Q3ED68		397	Uncharacterized PKHD-type	no	no	0.993	0.828	0.590	1e-118
Q28C22		349	2-oxoglutarate and iron-d	yes	no	0.734	0.696	0.358	2e-38
A3KGZ2		345	2-oxoglutarate and iron-d	yes	no	0.725	0.695	0.343	9e-37
Q9CQ04		349	2-oxoglutarate and iron-d	yes	no	0.697	0.661	0.349	1e-35
Q6N063		350	2-oxoglutarate and iron-d	no	no	0.691	0.654	0.360	1e-35
Q20679		730	Procollagen-lysine,2-oxog	yes	no	0.495	0.224	0.283	2e-10
Q9R0E1		741	Procollagen-lysine,2-oxog	no	no	0.495	0.221	0.276	8e-09
Q5U367		741	Procollagen-lysine,2-oxog	no	no	0.495	0.221	0.281	1e-08
Q5R6K5		738	Procollagen-lysine,2-oxog	no	no	0.495	0.222	0.276	2e-08
O60568		738	Procollagen-lysine,2-oxog	no	no	0.495	0.222	0.276	2e-08

>sp\|Q3ED68\|Y1295_ARATH Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2	Back alignment and function desciption

 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 258/330 (78%), Gaps = 1/330 (0%)

Query: 1   MALEASIDRRNHAQSATTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSL 60
           MAL++S  +    Q      +     A  +LR  P+ EH+P++Y+DL  L+++P LF+SL
Sbjct: 10  MALDSSGKQPEQQQQQQPRASSGNGEARLKLRRTPNEEHEPENYEDL-PLDYSPSLFTSL 68

Query: 61  ERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTM 120
           ERYLP  +L+ +R  K  +MRD+L++YS D ER RV RHKEYR +I+S+YQ LH E++T+
Sbjct: 69  ERYLPEQLLNSTRIDKASFMRDLLLRYSPDTERVRVLRHKEYRDKIMSSYQRLHGEIYTL 128

Query: 121 HAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHD 180
              S   P+F+ A    +E +FRS M E  PGI+TFEM +P+FCEMLL+EVE+ E+WV+D
Sbjct: 129 DPSSFFAPSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKWVYD 188

Query: 181 TRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVE 240
           +R  IMRPNTMN FG VLDDFG ++ML KL++DFI PI++V FPEV G++LDSHHG++VE
Sbjct: 189 SRSTIMRPNTMNNFGVVLDDFGFDSMLQKLVDDFISPIAQVLFPEVCGTSLDSHHGYIVE 248

Query: 241 YGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVP 300
           YG DRDV+LGFHVDDSEV+LNVCLG++FSGGEL+FRGVRCDKHVN+++  +E+ DYSHVP
Sbjct: 249 YGKDRDVDLGFHVDDSEVSLNVCLGKQFSGGELYFRGVRCDKHVNSDSTEKEVYDYSHVP 308

Query: 301 GYAVLHRGRHRHGARATTSGSRVNLLVWCR 330
           G+A+LHRGRHRHGARATTSG R NL++WCR
Sbjct: 309 GHAILHRGRHRHGARATTSGHRANLILWCR 338

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q28C22\|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Xenopus tropicalis GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|A3KGZ2\|OGFD2_DANRE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Danio rerio GN=ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q9CQ04\|OGFD2_MOUSE 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Mus musculus GN=Ogfod2 PE=2 SV=1	Back alignment and function description

>sp\|Q6N063\|OGFD2_HUMAN 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2	Back alignment and function description

>sp\|Q20679\|PLOD_CAEEL Procollagen-lysine,2-oxoglutarate 5-dioxygenase OS=Caenorhabditis elegans GN=let-268 PE=1 SV=1	Back alignment and function description

>sp\|Q9R0E1\|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus GN=Plod3 PE=1 SV=1	Back alignment and function description

>sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus GN=Plod3 PE=2 SV=1	Back alignment and function description

>sp\|Q5R6K5\|PLOD3_PONAB Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Pongo abelii GN=PLOD3 PE=2 SV=1	Back alignment and function description

>sp\|O60568\|PLOD3_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		331
449458771		384	PREDICTED: uncharacterized PKHD-type hyd	0.993	0.856	0.752	1e-152
255570701		379	oxidoreductase, putative [Ricinus commun	0.930	0.812	0.767	1e-146
225424112		379	PREDICTED: uncharacterized PKHD-type hyd	0.993	0.868	0.712	1e-145
359490986		395	PREDICTED: uncharacterized PKHD-type hyd	0.993	0.832	0.703	1e-144
255567788		411	oxidoreductase, putative [Ricinus commun	0.915	0.737	0.773	1e-143
356520629		370	PREDICTED: uncharacterized PKHD-type hyd	0.951	0.851	0.719	1e-137
224135445		391	predicted protein [Populus trichocarpa]	0.978	0.828	0.702	1e-135
356531172		379	PREDICTED: uncharacterized PKHD-type hyd	0.990	0.865	0.698	1e-134
217075767		395	unknown [Medicago truncatula]	0.981	0.822	0.668	1e-133
388494122		395	unknown [Medicago truncatula]	0.981	0.822	0.668	1e-133

>gi\|449458771\|ref\|XP_004147120.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus] gi\|449503401\|ref\|XP_004161984.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 253/336 (75%), Positives = 300/336 (89%), Gaps = 7/336 (2%)

Query: 1   MALEASIDRRNHAQS-ATTNGAVVLPP-----ASYRLRLNPSSEHKPDSYDDLHQLEFTP 54
           M+LEAS++RR   Q+  T NG  V+ P     +++RLRL P  +HK +SY+DL QLEF+P
Sbjct: 1   MSLEASLERRKQPQAPGTGNGNGVVSPTPQSLSTHRLRLQPKEDHKSESYEDL-QLEFSP 59

Query: 55  LLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLH 114
           +LFS LER+LPP ML+++R+VK QYMRDIL++Y+ +GER RVQRH+EYRQ+IISNYQPLH
Sbjct: 60  VLFSMLERHLPPNMLNVAREVKLQYMRDILLRYAPEGERNRVQRHREYRQKIISNYQPLH 119

Query: 115 RELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENF 174
           REL++MHA +  VP+F+KA+ +N+E SFR IM+EP PGIY FEMLQP+FCE LLSEVE+F
Sbjct: 120 RELYSMHAANFFVPSFLKAINENSEESFRRIMSEPSPGIYKFEMLQPQFCEKLLSEVESF 179

Query: 175 ERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSH 234
           ERWVH+T+FRIMRPNTMNK+GAVLDDFGLETMLDKLM+DFIRPIS+VFFPEVGG+TLDSH
Sbjct: 180 ERWVHETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMDDFIRPISRVFFPEVGGATLDSH 239

Query: 235 HGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEIL 294
           HGFVVEYG+DRDVELGFHVDDSEVTLNVCLG++FSGGELFFRG+RCDKHVNTETQSEEI 
Sbjct: 240 HGFVVEYGIDRDVELGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCDKHVNTETQSEEIF 299

Query: 295 DYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCR 330
           DY HVPG+AVLHRGRHRHGARATTSG RVNLL+WCR
Sbjct: 300 DYLHVPGHAVLHRGRHRHGARATTSGRRVNLLLWCR 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255570701\|ref\|XP_002526305.1\| oxidoreductase, putative [Ricinus communis] gi\|223534386\|gb\|EEF36094.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225424112\|ref\|XP_002283582.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Vitis vinifera] gi\|297737750\|emb\|CBI26951.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359490986\|ref\|XP_002277437.2\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255567788\|ref\|XP_002524872.1\| oxidoreductase, putative [Ricinus communis] gi\|223535835\|gb\|EEF37496.1\| oxidoreductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356520629\|ref\|XP_003528963.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|224135445\|ref\|XP_002322075.1\| predicted protein [Populus trichocarpa] gi\|222869071\|gb\|EEF06202.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356531172\|ref\|XP_003534152.1\| PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Glycine max]	Back alignment and taxonomy information

>gi\|217075767\|gb\|ACJ86243.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388494122\|gb\|AFK35127.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		331
TAIR\|locus:2092727		394	AT3G18210 [Arabidopsis thalian	0.966	0.812	0.628	4.1e-113
TAIR\|locus:2017774		397	AT1G22950 [Arabidopsis thalian	0.993	0.828	0.557	3e-101
TAIR\|locus:2158327		410	AT5G43660 [Arabidopsis thalian	0.981	0.792	0.480	3.6e-82
TAIR\|locus:2008189		291	AT1G48700 [Arabidopsis thalian	0.712	0.810	0.512	9.2e-68
DICTYBASE\|DDB_G0270778		417	DDB_G0270778 "putative prolyl	0.682	0.541	0.330	5.1e-35
ZFIN\|ZDB-GENE-061215-54		345	zgc:158437 "zgc:158437" [Danio	0.755	0.724	0.322	4.2e-31
RGD\|1310594		349	Ogfod2 "2-oxoglutarate and iro	0.697	0.661	0.329	6.9e-31
MGI\|MGI:1913877		349	Ogfod2 "2-oxoglutarate and iro	0.697	0.661	0.321	1.8e-30
UNIPROTKB\|F1NPS1		350	F1NPS1 "Uncharacterized protei	0.734	0.694	0.316	2.3e-30
UNIPROTKB\|Q6N063		350	OGFOD2 "2-oxoglutarate and iro	0.725	0.685	0.329	3e-30

TAIR\|locus:2092727 AT3G18210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
 Identities = 203/323 (62%), Positives = 259/323 (80%)

Query:     9 RRNHAQSATTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTM 68
             + +H+ + TT  A     +  RLRLNP++EH+PDSY+DL QL+F   ++SSLE+YLPP M
Sbjct:    26 QNSHSAAPTTLRATSTMVSCQRLRLNPNNEHRPDSYEDL-QLDFPNSVYSSLEKYLPPNM 84

Query:    69 LSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTMHAPSV-LV 127
             L  +RD K ++M DI++++   GER+R QRH +YR +I +NYQPLH+EL+T+  P+V  V
Sbjct:    85 LVSNRDEKIKFMTDIMLRHLPHGERSRAQRHSDYRLKITTNYQPLHKELYTL-VPTVCFV 143

Query:   128 PAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMR 187
             PAF+KA+ +NTE SFR+I++EP PG++ F+MLQP FCEM+L+E++NFERWV +T+FRIMR
Sbjct:   144 PAFLKAINENTEESFRNIISEPSPGVFVFDMLQPSFCEMMLAEIDNFERWVGETKFRIMR 203

Query:   188 PNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDV 247
             PNTMNK+GAVLDDFGL+TMLDKLM  FIRPISKVFF +VGG+TLDSHHGFVVEYG DRDV
Sbjct:   204 PNTMNKYGAVLDDFGLDTMLDKLMEGFIRPISKVFFSDVGGATLDSHHGFVVEYGKDRDV 263

Query:   248 ELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLXX 307
             +LGFHVDDSEVTLNVCLG +F GGELFFRG RC+KHVNT T+++E  DY H+PG AVL  
Sbjct:   264 DLGFHVDDSEVTLNVCLGNQFVGGELFFRGTRCEKHVNTATKADETYDYCHIPGQAVLHR 323

Query:   308 XXXXXXXXXTTSGSRVNLLVWCR 330
                      TT G RVN+L+WCR
Sbjct:   324 GRHRHGARATTCGHRVNMLLWCR 346

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR\|locus:2017774 AT1G22950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158327 AT5G43660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008189 AT1G48700 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0270778 DDB_G0270778 "putative prolyl 4-hydroxylase alpha subunit" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061215-54 zgc:158437 "zgc:158437" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1310594 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1913877 Ogfod2 "2-oxoglutarate and iron-dependent oxygenase domain containing 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NPS1 F1NPS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6N063 OGFOD2 "2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		331
smart00702		165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	6e-26
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	4e-06

>gnl\|CDD\|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

 Score =  100 bits (252), Expect = 6e-26
 Identities = 46/181 (25%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 160 QPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDK--LMNDFIRP 217
            P  C+ LL E E    W  +    I  PN  ++        G    L +  L+ + IR 
Sbjct: 1   SPAECQKLLEEAEPLG-WRGEVTRGIGNPNETSQ---YRQSNGTWLELLERDLVIERIRQ 56

Query: 218 ISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVD-----DSEVTLNVCLGREFSGGE 272
               F   + G  L +    V  YG       G HVD     D   T  + L     GGE
Sbjct: 57  RLADFLGLLAGLPLSAEDAQVARYG--PGGHYGPHVDNFLYGDRIATFILYLNDVEEGGE 114

Query: 273 LFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLH---RGRHRHGARATTSGSRVNLLVWC 329
           L F G+R       + +           G  +      GR  HG    T GSR  +  W 
Sbjct: 115 LVFPGLRLMVVATVKPK----------KGDLLFFPSGHGRSLHGVCPVTRGSRWAITGWI 164

Query: 330 R 330
           R
Sbjct: 165 R 165

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		331
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	100.0
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	99.85
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	99.82
PLN00052		310	prolyl 4-hydroxylase; Provisional	99.52
PHA02813		354	hypothetical protein; Provisional	99.34
KOG1971		415	consensus Lysyl hydroxylase [Posttranslational mod	99.19
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	99.16
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	99.03
PHA02869		418	C4L/C10L-like gene family protein; Provisional	99.03
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	98.48
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	98.21
PF12851		171	Tet_JBP: Oxygenase domain of the 2OGFeDO superfami	97.37
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	97.22
PF05721		211	PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro:	97.06
TIGR02408		277	ectoine_ThpD ectoine hydroxylase. Both ectoine and	96.94
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	96.87
TIGR02466		201	conserved hypothetical protein. This family consis	96.42
PF13661		70	2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	96.4
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	96.14
PF13759		101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	95.55
COG3826		236	Uncharacterized protein conserved in bacteria [Fun	94.79
PF03336		339	Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR	93.78
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	93.29
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	89.53
PLN02276		361	gibberellin 20-oxidase	89.36
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	88.93
PLN02904		357	oxidoreductase	88.53
PLN02365		300	2-oxoglutarate-dependent dioxygenase	87.68
PLN02947		374	oxidoreductase	87.48
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	87.01
COG3751		252	EGL-9 Predicted proline hydroxylase [Posttranslati	86.39
PLN02216		357	protein SRG1	86.35
PLN02156		335	gibberellin 2-beta-dioxygenase	85.97
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	85.7
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.49
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	85.27
PLN02485		329	oxidoreductase	84.89
PTZ00273		320	oxidase reductase; Provisional	84.51
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	84.44
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	83.44
PLN02254		358	gibberellin 3-beta-dioxygenase	83.21
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	82.97
PLN02704		335	flavonol synthase	82.9
PF10014		195	2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018	82.41
KOG3710		280	consensus EGL-Nine (EGLN) protein [Signal transduc	82.22
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	82.07

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=6.4e-54  Score=420.90  Aligned_cols=304  Identities=35%  Similarity=0.495  Sum_probs=292.9

Q ss_pred             CcccccccCCCCCCCCCCccccccCCCChhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCCchhhhhhhhhHHHHHH
Q 020122           26 PASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQR  105 (331)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~r~~~~~~~~~~~~  105 (331)
                      .++.++.+.||.+|++++|+|+ +|+|+++..++||.|+|+.+|++.++.|+|||.++|.+|+|..++.++..++.|+++
T Consensus        29 ~ni~ld~~~~~fq~l~g~~~dv-~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~  107 (415)
T KOG1971|consen   29 LNITLDHRSRIFQNLNGAYEDV-VLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYREL  107 (415)
T ss_pred             hcccccCcCcccccCcCCcCCe-eEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchh
Confidence            3446899999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCccccccCCCCccChhHHHHhhhhcHHHHhhhhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccc
Q 020122          106 IISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRI  185 (331)
Q Consensus       106 I~~~Y~~lhpdly~l~~e~yl~p~f~~ai~~~~~~~~~~~~~e~~P~Vy~fpvfs~~fC~~LIee~E~f~~ws~~s~~~i  185 (331)
                      |.++||+|+-..|.++|+.++.|+|..+...++++.|+++.+|+.|++|+||||++.||++++.++|+++.|+.++++++
T Consensus       108 ~~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i  187 (415)
T KOG1971|consen  108 IKSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVI  187 (415)
T ss_pred             hhhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCccceecccc--ChHHHHHHHHHHhhhhhhh---------------------hccCccCCCCCcccceeEEEEc
Q 020122          186 MRPNTMNKFGAVLDDF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYG  242 (331)
Q Consensus       186 ~rpn~mN~ygvvLdd~--Gl~~~~~~Ll~~~l~Pl~~---------------------~lfp~~~g~~Lds~~~FVVrY~  242 (331)
                      +|||+|++|+++++++  ++..+..+|.++|+.||++                     .+||.+++..|++|++|++.|.
T Consensus       188 ~~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~  267 (415)
T KOG1971|consen  188 TRPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESS  267 (415)
T ss_pred             cCChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeecc
Confidence            9999999999999999  9999999999999999999                     9999999999999999999996


Q ss_pred             CC-CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCCCcCCccCCcce
Q 020122          243 MD-RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGS  321 (331)
Q Consensus       243 ~~-~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~HeglpVTsG~  321 (331)
                      .+ .|+++++|+|++++|+|+||++.|+||+++|.+..|+.|.++ .+..|+|+++|.+|+|+||+|.|.|++.++++|+
T Consensus       268 ~~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~  346 (415)
T KOG1971|consen  268 EDNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQ  346 (415)
T ss_pred             CcCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCC
Confidence            65 999999999999999999999999999999999999999876 6788999999999999999999999999999999


Q ss_pred             -eEEEEEeecC
Q 020122          322 -RVNLLVWCRR  331 (331)
Q Consensus       322 -Ry~LV~W~rs  331 (331)
                       |-+++.||++
T Consensus       347 ~~~nv~~~~~~  357 (415)
T KOG1971|consen  347 PCPNVYWFPIS  357 (415)
T ss_pred             CCCceeeehhH
Confidence             7788888764

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PHA02813 hypothetical protein; Provisional	Back alignment and domain information

>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PHA02869 C4L/C10L-like gene family protein; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases	Back alignment and domain information

>TIGR02408 ectoine_ThpD ectoine hydroxylase	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>TIGR02466 conserved hypothetical protein	Back alignment and domain information

>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A	Back alignment and domain information

>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02216 protein SRG1	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function	Back alignment and domain information

>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]	Back alignment and domain information

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		331
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 50/333 (15%), Positives = 112/333 (33%), Gaps = 76/333 (22%)

Query: 17  TTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLE---RYLP-------P 66
           TT    V    S     + S +H   +           LL   L+   + LP       P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNP 327

Query: 67  TMLSM----SRDVK--FQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQP-LHRELFT 119
             LS+     RD    +   + +              +     +  ++  +P  +R++F 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRKMFD 376

Query: 120 MHA---PSVLVPAFVKAV--RDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENF 174
             +   PS  +P  + ++   D  ++    ++ +    ++ + +++ +  E  +S     
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTIS----- 427

Query: 175 ERWVHDTRFRIMRPN----TMNKFGAVLDDFGLETMLDKLMNDFIRP-ISKVFFPEVGGS 229
              +      +         +++  +++D + +    D   +D I P + + F+  +G  
Sbjct: 428 ---IPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIG-- 478

Query: 230 TLDSHHGFVVEYG----MDRDVELGFHVDDSEVTLNVCLGREFSGGEL-------FFRGV 278
               HH   +E+     + R V L F   + ++  +       SG  L       F++  
Sbjct: 479 ----HHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPY 533

Query: 279 RCDKHVNTETQSEEILDYSHVPGYAVLHRGRHR 311
            CD     E     ILD+        L   ++ 
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIE-ENLICSKYT 565

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		331
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	99.73
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.7
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.69
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	99.15
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	98.01
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	97.68
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	97.54
2rdq_A		288	1-deoxypentalenic acid 11-beta hydroxylase; Fe(II	97.36
2opw_A		291	Phyhd1 protein; double-stranded beta helix, oxygen	97.25
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	97.24
3gja_A		319	CYTC3; halogenase, beta barrel, biosynthetic prote	96.92
3emr_A		310	ECTD; double stranded beta helix, oxidoreductase;	96.41
3nnf_A		344	CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen	94.71
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	94.63
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	94.57
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	94.43
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	89.95
3pl0_A		254	Uncharacterized protein; quorum sensing, biofilm f	87.05
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	84.24
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	82.68
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	82.36
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	80.41

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

Probab=99.73  E-value=1e-17  Score=155.95  Aligned_cols=159  Identities=16%  Similarity=0.310  Sum_probs=107.5

Q ss_pred             CeEEEe-cCCCHHHHHHHHHHHHhcccccccCCcc-ccccCCCCccceeccccChH-HHHHHHHHHhhhhhhhhccCccC
Q 020122          151 PGIYTF-EMLQPRFCEMLLSEVENFERWVHDTRFR-IMRPNTMNKFGAVLDDFGLE-TMLDKLMNDFIRPISKVFFPEVG  227 (331)
Q Consensus       151 P~Vy~f-pvfs~~fC~~LIee~E~f~~ws~~s~~~-i~rpn~mN~ygvvLdd~Gl~-~~~~~Ll~~~l~Pl~~~lfp~~~  227 (331)
                      +.++.+ .|||+++|++||+.+|.- .|..+.... ..-....||..+..++. +. .+++.+.. .+..    - |.+.
T Consensus        19 ~~i~~i~dvLs~~Ec~~li~~~e~~-~~~dg~~t~g~~~~~vr~n~~l~~d~~-~~~~l~~~i~~-~l~~----~-~~f~   90 (243)
T 3dkq_A           19 GMLIEIPNVFSKQEVSHLREQLDAR-RWIDGNQTSGAMATTRKRNQQLDKDDP-VAVALGQQIMD-RLLA----H-PQFV   90 (243)
T ss_dssp             TTBEEECCSSCHHHHHHHHHHHHTS-CCEEECCCSSBSSCCCEEEEECCTTCH-HHHHHHHHHHH-HHHT----C-HHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHHHhhC-CCccCcccCCCccccceeeeEECCCCH-HHHHHHHHHHH-HHcc----C-cchh
Confidence            566777 499999999999999863 454322111 11123344544444443 33 33333332 2211    0 0111


Q ss_pred             CCCC--cccceeEEEEcCCCCCCccccccCC-----------ceeEEEeecc--cccccceEEecccccccccccccccc
Q 020122          228 GSTL--DSHHGFVVEYGMDRDVELGFHVDDS-----------EVTLNVCLGR--EFSGGELFFRGVRCDKHVNTETQSEE  292 (331)
Q Consensus       228 g~~L--ds~~~FVVrY~~~~d~~L~~H~D~S-----------evTlNI~Ln~--dFeGGgl~F~~~~c~~~v~~~~~~~e  292 (331)
                      ..+|  ......+.+|.+++  .+++|+|.+           .+|+.++||+  +|+||+|.|......           
T Consensus        91 ~~~L~~~~e~~~~~rY~~G~--~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~~-----------  157 (243)
T 3dkq_A           91 SAALPLQFYPPLFNRYQGGE--TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQ-----------  157 (243)
T ss_dssp             HHHCEEEEEEEEEEEECTTC--EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTEE-----------
T ss_pred             hcccccccccceEEEECCCC--eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCCc-----------
Confidence            1111  12234489999976  999999963           5899999998  999999999964321           


Q ss_pred             cccccCCCcEEEEecCCCCcCCccCCcceeEEEEEeecC
Q 020122          293 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR  331 (331)
Q Consensus       293 ~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rs  331 (331)
                       ..++|++|.+|+|++..+|+|.|||+|+||+++.|++|
T Consensus       158 -~~V~P~~G~~v~F~s~~lH~v~pV~~G~R~~~~~Wi~s  195 (243)
T 3dkq_A          158 -QSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQS  195 (243)
T ss_dssp             -EEECCCTTCEEEEETTSEEEECCEEEECEEEEEEEEEE
T ss_pred             -EEEecCCCEEEEECCCCeEcCccccccCEEEEEEehhh
Confidence             24689999999999999999999999999999999986

PyMOL of 3dkq

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*	Back alignment and structure

>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}	Back alignment and structure

>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}	Back alignment and structure

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		331
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	97.75
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	97.03
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	96.94
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	96.42
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	87.25
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	87.03
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	81.08
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	80.48

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00031  Score=61.65  Aligned_cols=173  Identities=15%  Similarity=0.141  Sum_probs=85.2

Q ss_pred             eEEEec-CCCHHHHHHHHHHHHhcccc-cccCCcccccc------CCCCcccee--ccccChH-HHHHHHHHHhhhhhhh
Q 020122          152 GIYTFE-MLQPRFCEMLLSEVENFERW-VHDTRFRIMRP------NTMNKFGAV--LDDFGLE-TMLDKLMNDFIRPISK  220 (331)
Q Consensus       152 ~Vy~fp-vfs~~fC~~LIee~E~f~~w-s~~s~~~i~rp------n~mN~ygvv--Ldd~Gl~-~~~~~Ll~~~l~Pl~~  220 (331)
                      |...++ +|++++|++|.++++..-+. ...........      ...+....+  +..+... .++.-+...-+..+++
T Consensus        23 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  102 (296)
T d2a1xa1          23 GFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVE  102 (296)
T ss_dssp             SEEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCTTSHHHHHHHHCHHHHHHHH
T ss_pred             CEEEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhhhchhHHhhcccHHHHHHHH
Confidence            666674 99999999999999875432 11011110000      000011111  2222222 2333222233333444


Q ss_pred             hcc-CccCCCCCcccceeEEEEcC--CCCCCccccccCC---------ceeEEEeecc-cccccceEEecccccc----c
Q 020122          221 VFF-PEVGGSTLDSHHGFVVEYGM--DRDVELGFHVDDS---------EVTLNVCLGR-EFSGGELFFRGVRCDK----H  283 (331)
Q Consensus       221 ~lf-p~~~g~~Lds~~~FVVrY~~--~~d~~L~~H~D~S---------evTlNI~Ln~-dFeGGgl~F~~~~c~~----~  283 (331)
                      .++ +++.    -.+..++++...  ++.....+|.|.+         .+|+-|+|.+ +-+.|.+.|....-+.    +
T Consensus       103 ~llg~~~~----~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~  178 (296)
T d2a1xa1         103 CFTGPNIM----AMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH  178 (296)
T ss_dssp             HHHCSSEE----EEEEEEEEECCC--------CCBCGGGGCCEECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCC
T ss_pred             Hhhccccc----eecccccccccccccccccCCcccCccccccCCccccceeeEeeeeccccccccceeccccccccccc
Confidence            444 2111    112223333321  1223467899953         2688889964 4567778776422110    0


Q ss_pred             ---------------ccccccccccccccCCCcEEEEecCCCCcCCcc-CCcceeEEEEEe
Q 020122          284 ---------------VNTETQSEEILDYSHVPGYAVLHRGRHRHGARA-TTSGSRVNLLVW  328 (331)
Q Consensus       284 ---------------v~~~~~~~e~~~y~~~~G~AllH~Grh~Heglp-VTsG~Ry~LV~W  328 (331)
                                     +.........+....++|.+++|.++.+|++.+ .|++.|+.+++-
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~~l~Hgs~~N~S~~~R~~l~~~  239 (296)
T d2a1xa1         179 DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCH  239 (296)
T ss_dssp             CC-----------CCCCC-CCCSCCEEECBCTTCEEEECTTCCEEECCBCSSSCEEEEEEE
T ss_pred             ccccccCCcccccccccchhhccceEEeeecCCcEEEECCCeeecCCCCCCcCceEEEEEE
Confidence                           000000011223456899999999999999988 667789998764

PyMOL of d2a1xa1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure